AlfalfaGEDB | Msa1176170

M. sativa cultivar zhongmu-4 / Msa1176170

KEGG: -
GO: -
PFAM: PF00173.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1176170	XP_013444579.2	88.732	142	7	1	1	133	1	142	3.13e-86	259

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1176170	sp\|P40934\|CYB5_BRAOB	50.000	136	56	3	1	127	1	133	2.04e-45	147

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1176170	G7LAT7	88.732	142	7	1	1	133	1	142	1.52e-86	258

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001830	Msa1176170	0.847840	8.964400e-60	-8.615850e-47
Msa0008200	Msa1176170	0.821311	4.319954e-53	-8.615850e-47
Msa0010490	Msa1176170	0.833811	4.304709e-56	-8.615850e-47
Msa0010500	Msa1176170	0.816886	4.388568e-52	-8.615850e-47
Msa0036540	Msa1176170	0.810545	1.092962e-50	-8.615850e-47
Msa0059950	Msa1176170	0.804574	2.024004e-49	-8.615850e-47
Msa0082420	Msa1176170	0.831259	1.847154e-55	-8.615850e-47
Msa0090510	Msa1176170	0.812658	3.794467e-51	-8.615850e-47
Msa0100290	Msa1176170	0.812761	3.603164e-51	-8.615850e-47
Msa0117520	Msa1176170	0.809239	2.087230e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1176170	MtrunA17_Chr8g0346311	88.732	142	7	1	1	133	1	142	3.53e-90	258
Msa1176170	MtrunA17_Chr3g0127451	51.471	136	54	2	1	127	1	133	6.64e-46	145
Msa1176170	MtrunA17_Chr7g0276081	55.714	140	52	2	3	133	4	142	1.78e-45	144
Msa1176170	MtrunA17_Chr4g0010061	44.928	138	64	3	1	129	14	148	4.79e-41	133
Msa1176170	MtrunA17_Chr5g0419651	54.444	90	31	2	1	81	1	89	5.26e-28	99.8
Msa1176170	MtrunA17_Chr3g0134591	30.000	140	78	3	3	127	2	136	6.81e-20	79.7
Msa1176170	MtrunA17_Chr3g0115151	31.852	135	62	3	1	106	457	590	4.55e-15	70.5
Msa1176170	MtrunA17_Chr3g0115131	46.053	76	31	2	5	71	516	590	2.13e-14	68.6
Msa1176170	MtrunA17_Chr5g0424491	41.463	82	38	2	1	73	513	593	2.61e-13	65.5
Msa1176170	MtrunA17_Chr6g0486891	37.681	69	35	1	12	72	50	118	4.02e-13	61.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1176170	AT5G53560.1	48.529	136	58	3	1	127	1	133	5.94e-45	143
Msa1176170	AT5G48810.1	48.889	135	59	2	1	126	1	134	1.37e-43	140
Msa1176170	AT2G32720.1	49.630	135	56	3	1	126	1	132	1.53e-42	137
Msa1176170	AT2G32720.2	50.000	114	45	3	22	126	22	132	1.63e-30	107
Msa1176170	AT2G46650.1	46.154	130	58	3	8	127	5	132	1.09e-28	102
Msa1176170	AT1G26340.1	46.512	86	37	1	1	77	1	86	2.88e-26	96.3
Msa1176170	AT1G37130.1	41.250	80	37	2	1	71	538	616	1.25e-14	69.7
Msa1176170	AT1G60660.1	41.176	68	32	1	12	71	53	120	1.54e-14	65.5
Msa1176170	AT1G77760.1	40.000	80	38	2	1	71	541	619	2.73e-13	65.9

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Find 33 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATCTTGCAGTTGAAGAAGA+TGG	0.435798	8_1:+8198055	Msa1176170:intron
ACAATAACAAGAACGATTGC+TGG	0.477730	8_1:+8198120	Msa1176170:CDS
AGAAGATTGATTGCTGCTTA+TGG	0.334533	8_1:-8202320	None:intergenic
AGATGTTGGCCACAGTGACT+CGG	0.590642	8_1:+8202198	Msa1176170:CDS
AGCTGCTGCTGGAAGAGTGT+TGG	0.552849	8_1:-8202263	None:intergenic
ATAAGCAGCAATCAATCTTC+TGG	0.400727	8_1:+8202322	Msa1176170:CDS
ATCAGAGACTTTAACCTTTG+AGG	0.335279	8_1:+8198085	Msa1176170:CDS
ATCTTGCAGTTGAAGAAGAT+GGG	0.518015	8_1:+8198056	Msa1176170:intron
ATGATGGAAAAGTACTATGT+CGG	0.538408	8_1:+8202229	Msa1176170:CDS
ATTCATTACTTAAGATTCAT+TGG	0.334499	8_1:-8202434	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTGAGAATGATTGTGATAT+AGG	+	chr8_1:8198329-8198348	Msa1176170:intron	30.0%
CATTAGATCATGTCATGATA+TGG	-	chr8_1:8198649-8198668	None:intergenic	30.0%
GTTAATACTCACTCTCTAAT+TGG	+	chr8_1:8198903-8198922	Msa1176170:intron	30.0%
GTTAAATCAATGTGAAGTGT+TGG	+	chr8_1:8198926-8198945	Msa1176170:intron	30.0%
TTAACATCACGGAAATTAGA+TGG	-	chr8_1:8199064-8199083	None:intergenic	30.0%
AACTGTAATGGTTAACATCA+CGG	-	chr8_1:8199075-8199094	None:intergenic	30.0%
AATTGCTAAAGAGTGAAGAA+CGG	-	chr8_1:8199752-8199771	None:intergenic	30.0%
TCATTACCAAGTTAGAATGT+TGG	+	chr8_1:8199926-8199945	Msa1176170:intron	30.0%
ATGATTAATCTAGTAACAGC+TGG	-	chr8_1:8200134-8200153	None:intergenic	30.0%
GAATTTGCAAAGATTTAACC+AGG	-	chr8_1:8200225-8200244	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	8197821	8202809	8197821	ID=Msa1176170;Name=Msa1176170
chr8_1	mRNA	8197821	8202809	8197821	ID=Msa1176170-mRNA-1;Parent=Msa1176170;Name=Msa1176170-mRNA-1;_AED=0.03;_eAED=0.03;_QI=91\|0.66\|0.75\|1\|0.33\|0.5\|4\|362\|133
chr8_1	exon	8197821	8197902	8197821	ID=Msa1176170-mRNA-1:exon:2803;Parent=Msa1176170-mRNA-1
chr8_1	exon	8198065	8198160	8198065	ID=Msa1176170-mRNA-1:exon:2804;Parent=Msa1176170-mRNA-1
chr8_1	exon	8201649	8201688	8201649	ID=Msa1176170-mRNA-1:exon:2805;Parent=Msa1176170-mRNA-1
chr8_1	exon	8202173	8202809	8202173	ID=Msa1176170-mRNA-1:exon:2806;Parent=Msa1176170-mRNA-1
chr8_1	five_prime_UTR	8197821	8197902	8197821	ID=Msa1176170-mRNA-1:five_prime_utr;Parent=Msa1176170-mRNA-1
chr8_1	five_prime_UTR	8198065	8198073	8198065	ID=Msa1176170-mRNA-1:five_prime_utr;Parent=Msa1176170-mRNA-1
chr8_1	CDS	8198074	8198160	8198074	ID=Msa1176170-mRNA-1:cds;Parent=Msa1176170-mRNA-1
chr8_1	CDS	8201649	8201688	8201649	ID=Msa1176170-mRNA-1:cds;Parent=Msa1176170-mRNA-1
chr8_1	CDS	8202173	8202447	8202173	ID=Msa1176170-mRNA-1:cds;Parent=Msa1176170-mRNA-1
chr8_1	three_prime_UTR	8202448	8202809	8202448	ID=Msa1176170-mRNA-1:three_prime_utr;Parent=Msa1176170-mRNA-1

Gene Sequence

>Msa1176170

ATGGGTTCAAAATCAGAGACTTTAACCTTTGAGGATGTGGCTAAGCACAATAACAAGAACGATTGCTGGATCATAGTCAACAAAAAGGTATATGATGTTACCCCATTTTTGGATGATCATCCCGGAGGGAAGGATGCTACCACCGATTTTGAAGATGTTGGCCACAGTGACTCGGCAACAGAGATGATGGAAAAGTACTATGTCGGGGAGGTTGACGCCAACACTCTTCCAGCAGCAGCTAAGAACAATCCAACAGCACCAATTCAAGCATCTACCATAAGCAGCAATCAATCTTCTGGAGTTTTGTTGAAGTTCTTGCAGTACCTGGTGCCGTTGCTGATATTGGGATCTGCATTTGCTCTTCAGTACTATGGAAAAAGAAGCAAGTCCAATGAATCTTAA

Protein sequence

>Msa1176170

MGSKSETLTFEDVAKHNNKNDCWIIVNKKVYDVTPFLDDHPGGKDATTDFEDVGHSDSATEMMEKYYVGEVDANTLPAAAKNNPTAPIQASTISSNQSSGVLLKFLQYLVPLLILGSAFALQYYGKRSKSNES*