Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1176170 | XP_013444579.2 | 88.732 | 142 | 7 | 1 | 1 | 133 | 1 | 142 | 3.13e-86 | 259 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1176170 | sp|P40934|CYB5_BRAOB | 50.000 | 136 | 56 | 3 | 1 | 127 | 1 | 133 | 2.04e-45 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1176170 | G7LAT7 | 88.732 | 142 | 7 | 1 | 1 | 133 | 1 | 142 | 1.52e-86 | 258 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001830 | Msa1176170 | 0.847840 | 8.964400e-60 | -8.615850e-47 |
| Msa0008200 | Msa1176170 | 0.821311 | 4.319954e-53 | -8.615850e-47 |
| Msa0010490 | Msa1176170 | 0.833811 | 4.304709e-56 | -8.615850e-47 |
| Msa0010500 | Msa1176170 | 0.816886 | 4.388568e-52 | -8.615850e-47 |
| Msa0036540 | Msa1176170 | 0.810545 | 1.092962e-50 | -8.615850e-47 |
| Msa0059950 | Msa1176170 | 0.804574 | 2.024004e-49 | -8.615850e-47 |
| Msa0082420 | Msa1176170 | 0.831259 | 1.847154e-55 | -8.615850e-47 |
| Msa0090510 | Msa1176170 | 0.812658 | 3.794467e-51 | -8.615850e-47 |
| Msa0100290 | Msa1176170 | 0.812761 | 3.603164e-51 | -8.615850e-47 |
| Msa0117520 | Msa1176170 | 0.809239 | 2.087230e-50 | -8.615850e-47 |
| Msa0610180 | Msa1176170 | 0.802694 | 4.966915e-49 | -8.615850e-47 |
| Msa0631320 | Msa1176170 | 0.824132 | 9.522771e-54 | -8.615850e-47 |
| Msa0641130 | Msa1176170 | 0.802443 | 5.595514e-49 | -8.615850e-47 |
| Msa0654900 | Msa1176170 | 0.805933 | 1.050882e-49 | -8.615850e-47 |
| Msa0657120 | Msa1176170 | 0.806381 | 8.456461e-50 | -8.615850e-47 |
| Msa0689320 | Msa1176170 | 0.813569 | 2.395445e-51 | -8.615850e-47 |
| Msa0694140 | Msa1176170 | 0.801240 | 9.884691e-49 | -8.615850e-47 |
| Msa0698450 | Msa1176170 | 0.802885 | 4.537473e-49 | -8.615850e-47 |
| Msa0698460 | Msa1176170 | 0.822764 | 1.989346e-53 | -8.615850e-47 |
| Msa0741440 | Msa1176170 | 0.825903 | 3.636962e-54 | -8.615850e-47 |
| Msa0772280 | Msa1176170 | 0.817999 | 2.463850e-52 | -8.615850e-47 |
| Msa0796580 | Msa1176170 | -0.830821 | 2.366492e-55 | -8.615850e-47 |
| Msa0802240 | Msa1176170 | 0.820353 | 7.174220e-53 | -8.615850e-47 |
| Msa0822500 | Msa1176170 | 0.817401 | 3.360742e-52 | -8.615850e-47 |
| Msa0833950 | Msa1176170 | -0.812603 | 3.901870e-51 | -8.615850e-47 |
| Msa0120880 | Msa1176170 | 0.811853 | 5.688770e-51 | -8.615850e-47 |
| Msa0138020 | Msa1176170 | 0.810569 | 1.080027e-50 | -8.615850e-47 |
| Msa0138900 | Msa1176170 | 0.801374 | 9.278609e-49 | -8.615850e-47 |
| Msa0144530 | Msa1176170 | 0.821502 | 3.903367e-53 | -8.615850e-47 |
| Msa0148080 | Msa1176170 | 0.816575 | 5.152264e-52 | -8.615850e-47 |
| Msa0160960 | Msa1176170 | 0.805058 | 1.603607e-49 | -8.615850e-47 |
| Msa0183910 | Msa1176170 | 0.814149 | 1.784182e-51 | -8.615850e-47 |
| Msa0216850 | Msa1176170 | -0.810935 | 8.998273e-51 | -8.615850e-47 |
| Msa0233370 | Msa1176170 | 0.804474 | 2.122802e-49 | -8.615850e-47 |
| Msa0234410 | Msa1176170 | -0.813716 | 2.223350e-51 | -8.615850e-47 |
| Msa0364790 | Msa1176170 | 0.803608 | 3.214558e-49 | -8.615850e-47 |
| Msa0385500 | Msa1176170 | 0.807298 | 5.412029e-50 | -8.615850e-47 |
| Msa0412260 | Msa1176170 | 0.810867 | 9.312511e-51 | -8.615850e-47 |
| Msa0427580 | Msa1176170 | 0.805573 | 1.250874e-49 | -8.615850e-47 |
| Msa0456770 | Msa1176170 | 0.833199 | 6.115512e-56 | -8.615850e-47 |
| Msa0460740 | Msa1176170 | 0.806307 | 8.766457e-50 | -8.615850e-47 |
| Msa0481030 | Msa1176170 | 0.806358 | 8.549519e-50 | -8.615850e-47 |
| Msa0982090 | Msa1176170 | -0.839523 | 1.506417e-57 | -8.615850e-47 |
| Msa0985180 | Msa1176170 | 0.803410 | 3.532688e-49 | -8.615850e-47 |
| Msa0994370 | Msa1176170 | 0.800467 | 1.422010e-48 | -8.615850e-47 |
| Msa1023310 | Msa1176170 | 0.846407 | 2.214065e-59 | -8.615850e-47 |
| Msa1029050 | Msa1176170 | 0.806066 | 9.850929e-50 | -8.615850e-47 |
| Msa1062040 | Msa1176170 | 0.853792 | 1.890907e-61 | -8.615850e-47 |
| Msa1089460 | Msa1176170 | 0.806063 | 9.865877e-50 | -8.615850e-47 |
| Msa0317970 | Msa1176170 | 0.805192 | 1.502899e-49 | -8.615850e-47 |
| Msa0322240 | Msa1176170 | 0.802842 | 4.630305e-49 | -8.615850e-47 |
| Msa0333850 | Msa1176170 | -0.806369 | 8.507812e-50 | -8.615850e-47 |
| Msa0339910 | Msa1176170 | 0.813595 | 2.363565e-51 | -8.615850e-47 |
| Msa1107200 | Msa1176170 | 0.849258 | 3.630348e-60 | -8.615850e-47 |
| Msa1137780 | Msa1176170 | 0.801385 | 9.232314e-49 | -8.615850e-47 |
| Msa1150780 | Msa1176170 | 0.810482 | 1.127778e-50 | -8.615850e-47 |
| Msa1158390 | Msa1176170 | 0.818157 | 2.269306e-52 | -8.615850e-47 |
| Msa1175200 | Msa1176170 | 0.835068 | 2.080883e-56 | -8.615850e-47 |
| Msa1176170 | Msa1183140 | 0.853335 | 2.558507e-61 | -8.615850e-47 |
| Msa1176170 | Msa1207310 | 0.804958 | 1.682438e-49 | -8.615850e-47 |
| Msa1176170 | Msa1229480 | 0.822063 | 2.895048e-53 | -8.615850e-47 |
| Msa1176170 | Msa1270050 | 0.803163 | 3.973948e-49 | -8.615850e-47 |
| Msa1176170 | Msa1272010 | 0.804838 | 1.782391e-49 | -8.615850e-47 |
| Msa1176170 | Msa1277410 | 0.924600 | 5.671546e-90 | -8.615850e-47 |
| Msa1176170 | Msa1277780 | 0.814422 | 1.553086e-51 | -8.615850e-47 |
| Msa1176170 | Msa1307140 | 0.859811 | 3.194092e-63 | -8.615850e-47 |
| Msa1176170 | Msa1307160 | 0.955786 | 1.357621e-113 | -8.615850e-47 |
| Msa1176170 | Msa1307180 | 0.890552 | 8.887427e-74 | -8.615850e-47 |
| Msa1176170 | Msa1309760 | 0.835544 | 1.577521e-56 | -8.615850e-47 |
| Msa1176170 | Msa1316360 | 0.904887 | 7.668139e-80 | -8.615850e-47 |
| Msa1176170 | Msa1336560 | 0.805178 | 1.512969e-49 | -8.615850e-47 |
| Msa1176170 | Msa1341060 | 0.814837 | 1.256954e-51 | -8.615850e-47 |
| Msa1176170 | Msa1346840 | 0.822269 | 2.592504e-53 | -8.615850e-47 |
| Msa1176170 | Msa1352890 | 0.824379 | 8.334519e-54 | -8.615850e-47 |
| Msa1176170 | Msa1355890 | 0.806213 | 9.172943e-50 | -8.615850e-47 |
| Msa1176170 | Msa1359400 | 0.827152 | 1.831343e-54 | -8.615850e-47 |
| Msa1176170 | Msa1364350 | -0.805647 | 1.206755e-49 | -8.615850e-47 |
| Msa1176170 | Msa1368360 | 0.818242 | 2.170894e-52 | -8.615850e-47 |
| Msa1176170 | Msa1382380 | -0.844130 | 9.148794e-59 | -8.615850e-47 |
| Msa1176170 | Msa1412130 | 0.810690 | 1.017074e-50 | -8.615850e-47 |
| Msa0485710 | Msa1176170 | 0.820185 | 7.839808e-53 | -8.615850e-47 |
| Msa0500470 | Msa1176170 | 0.808205 | 3.472646e-50 | -8.615850e-47 |
| Msa0510930 | Msa1176170 | 0.805750 | 1.148189e-49 | -8.615850e-47 |
| Msa0518170 | Msa1176170 | 0.814808 | 1.275675e-51 | -8.615850e-47 |
| Msa0519160 | Msa1176170 | 0.801006 | 1.103591e-48 | -8.615850e-47 |
| Msa0534870 | Msa1176170 | 0.819003 | 1.458701e-52 | -8.615850e-47 |
| Msa0536350 | Msa1176170 | 0.807485 | 4.939301e-50 | -8.615850e-47 |
| Msa0545050 | Msa1176170 | 0.811063 | 8.442251e-51 | -8.615850e-47 |
| Msa0574930 | Msa1176170 | 0.814405 | 1.566591e-51 | -8.615850e-47 |
| Msa0576120 | Msa1176170 | -0.811695 | 6.156518e-51 | -8.615850e-47 |
| Msa0600590 | Msa1176170 | 0.822818 | 1.932310e-53 | -8.615850e-47 |
| Msa0881530 | Msa1176170 | -0.839271 | 1.751256e-57 | -8.615850e-47 |
| Msa0930740 | Msa1176170 | 0.826909 | 2.094102e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1176170 | MtrunA17_Chr8g0346311 | 88.732 | 142 | 7 | 1 | 1 | 133 | 1 | 142 | 3.53e-90 | 258 |
| Msa1176170 | MtrunA17_Chr3g0127451 | 51.471 | 136 | 54 | 2 | 1 | 127 | 1 | 133 | 6.64e-46 | 145 |
| Msa1176170 | MtrunA17_Chr7g0276081 | 55.714 | 140 | 52 | 2 | 3 | 133 | 4 | 142 | 1.78e-45 | 144 |
| Msa1176170 | MtrunA17_Chr4g0010061 | 44.928 | 138 | 64 | 3 | 1 | 129 | 14 | 148 | 4.79e-41 | 133 |
| Msa1176170 | MtrunA17_Chr5g0419651 | 54.444 | 90 | 31 | 2 | 1 | 81 | 1 | 89 | 5.26e-28 | 99.8 |
| Msa1176170 | MtrunA17_Chr3g0134591 | 30.000 | 140 | 78 | 3 | 3 | 127 | 2 | 136 | 6.81e-20 | 79.7 |
| Msa1176170 | MtrunA17_Chr3g0115151 | 31.852 | 135 | 62 | 3 | 1 | 106 | 457 | 590 | 4.55e-15 | 70.5 |
| Msa1176170 | MtrunA17_Chr3g0115131 | 46.053 | 76 | 31 | 2 | 5 | 71 | 516 | 590 | 2.13e-14 | 68.6 |
| Msa1176170 | MtrunA17_Chr5g0424491 | 41.463 | 82 | 38 | 2 | 1 | 73 | 513 | 593 | 2.61e-13 | 65.5 |
| Msa1176170 | MtrunA17_Chr6g0486891 | 37.681 | 69 | 35 | 1 | 12 | 72 | 50 | 118 | 4.02e-13 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1176170 | AT5G53560.1 | 48.529 | 136 | 58 | 3 | 1 | 127 | 1 | 133 | 5.94e-45 | 143 |
| Msa1176170 | AT5G48810.1 | 48.889 | 135 | 59 | 2 | 1 | 126 | 1 | 134 | 1.37e-43 | 140 |
| Msa1176170 | AT2G32720.1 | 49.630 | 135 | 56 | 3 | 1 | 126 | 1 | 132 | 1.53e-42 | 137 |
| Msa1176170 | AT2G32720.2 | 50.000 | 114 | 45 | 3 | 22 | 126 | 22 | 132 | 1.63e-30 | 107 |
| Msa1176170 | AT2G46650.1 | 46.154 | 130 | 58 | 3 | 8 | 127 | 5 | 132 | 1.09e-28 | 102 |
| Msa1176170 | AT1G26340.1 | 46.512 | 86 | 37 | 1 | 1 | 77 | 1 | 86 | 2.88e-26 | 96.3 |
| Msa1176170 | AT1G37130.1 | 41.250 | 80 | 37 | 2 | 1 | 71 | 538 | 616 | 1.25e-14 | 69.7 |
| Msa1176170 | AT1G60660.1 | 41.176 | 68 | 32 | 1 | 12 | 71 | 53 | 120 | 1.54e-14 | 65.5 |
| Msa1176170 | AT1G77760.1 | 40.000 | 80 | 38 | 2 | 1 | 71 | 541 | 619 | 2.73e-13 | 65.9 |
Find 33 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTTGCTCTTCAGTACTA+TGG | 0.296249 | 8_1:+8202397 | Msa1176170:CDS |
| CCTGGTGCCGTTGCTGATAT+TGG | 0.324237 | 8_1:+8202369 | Msa1176170:CDS |
| ATTCATTACTTAAGATTCAT+TGG | 0.334499 | 8_1:-8202434 | None:intergenic |
| AGAAGATTGATTGCTGCTTA+TGG | 0.334533 | 8_1:-8202320 | None:intergenic |
| ATCAGAGACTTTAACCTTTG+AGG | 0.335279 | 8_1:+8198085 | Msa1176170:CDS |
| GACTTTAACCTTTGAGGATG+TGG | 0.376866 | 8_1:+8198091 | Msa1176170:CDS |
| ATAAGCAGCAATCAATCTTC+TGG | 0.400727 | 8_1:+8202322 | Msa1176170:CDS |
| TGATGGAAAAGTACTATGTC+GGG | 0.401001 | 8_1:+8202230 | Msa1176170:CDS |
| CTGGTGCCGTTGCTGATATT+GGG | 0.414415 | 8_1:+8202370 | Msa1176170:CDS |
| CTTATGGTAGATGCTTGAAT+TGG | 0.417094 | 8_1:-8202304 | None:intergenic |
| GATGCTTGAATTGGTGCTGT+TGG | 0.425349 | 8_1:-8202295 | None:intergenic |
| CTGGATCATAGTCAACAAAA+AGG | 0.426357 | 8_1:+8198139 | Msa1176170:CDS |
| GGATTGTTCTTAGCTGCTGC+TGG | 0.435494 | 8_1:-8202274 | None:intergenic |
| AATCTTGCAGTTGAAGAAGA+TGG | 0.435798 | 8_1:+8198055 | Msa1176170:intron |
| TAAGTAATGAATTTGAACTT+TGG | 0.441457 | 8_1:+8202445 | Msa1176170:exon |
| GTGGCCAACATCTTCAAAAT+CGG | 0.455103 | 8_1:-8202188 | None:intergenic |
| CGCAATCTAGCATGAATAAG+AGG | 0.472461 | 8_1:-8202612 | None:intergenic |
| ACAATAACAAGAACGATTGC+TGG | 0.477730 | 8_1:+8198120 | Msa1176170:CDS |
| GTTGAAGTTCTTGCAGTACC+TGG | 0.488377 | 8_1:+8202351 | Msa1176170:CDS |
| TAATAATCTATATCAACATA+AGG | 0.507284 | 8_1:+8202509 | Msa1176170:three_prime_UTR |
| CCAATATCAGCAACGGCACC+AGG | 0.516481 | 8_1:-8202369 | None:intergenic |
| ATCTTGCAGTTGAAGAAGAT+GGG | 0.518015 | 8_1:+8198056 | Msa1176170:intron |
| TGACTCGGCAACAGAGATGA+TGG | 0.533371 | 8_1:+8202213 | Msa1176170:CDS |
| ATGATGGAAAAGTACTATGT+CGG | 0.538408 | 8_1:+8202229 | Msa1176170:CDS |
| AGCTGCTGCTGGAAGAGTGT+TGG | 0.552849 | 8_1:-8202263 | None:intergenic |
| GAGATATTATATCAGAGTCA+TGG | 0.553803 | 8_1:-8202636 | None:intergenic |
| GTGCTTAGCCACATCCTCAA+AGG | 0.580670 | 8_1:-8198099 | None:intergenic |
| AGATGTTGGCCACAGTGACT+CGG | 0.590642 | 8_1:+8202198 | Msa1176170:CDS |
| GCCAACATCTTCAAAATCGG+TGG | 0.624406 | 8_1:-8202185 | None:intergenic |
| GCAGATCCCAATATCAGCAA+CGG | 0.642745 | 8_1:-8202376 | None:intergenic |
| GATGGAAAAGTACTATGTCG+GGG | 0.689368 | 8_1:+8202231 | Msa1176170:CDS |
| TCTCTGTTGCCGAGTCACTG+TGG | 0.717695 | 8_1:-8202207 | None:intergenic |
| GGAAAAGTACTATGTCGGGG+AGG | 0.724893 | 8_1:+8202234 | Msa1176170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTAAATATATTTTATTTT+GGG | - | chr8_1:8200583-8200602 | None:intergenic | 0.0% |
| !!! | ATATTAAATATATTTTATTT+TGG | - | chr8_1:8200584-8200603 | None:intergenic | 0.0% |
| !!! | AAAATCTGATTAATTTTTTT+TGG | + | chr8_1:8197951-8197970 | Msa1176170:intron | 10.0% |
| !!! | AAATCTGATTAATTTTTTTT+GGG | + | chr8_1:8197952-8197971 | Msa1176170:intron | 10.0% |
| !! | GAAAAAAAAAAAAACTAAAT+TGG | - | chr8_1:8198708-8198727 | None:intergenic | 10.0% |
| !! | TATTGTAGTTAAAAAAAAAT+TGG | + | chr8_1:8199330-8199349 | Msa1176170:intron | 10.0% |
| !! | ATTGTAGTTAAAAAAAAATT+GGG | + | chr8_1:8199331-8199350 | Msa1176170:intron | 10.0% |
| !!! | ACTGTTTTTTTTTTTTTTTT+GGG | - | chr8_1:8200513-8200532 | None:intergenic | 10.0% |
| !!! | TACTGTTTTTTTTTTTTTTT+TGG | - | chr8_1:8200514-8200533 | None:intergenic | 10.0% |
| !! | AAGTAATGAAATTTATATTT+AGG | + | chr8_1:8201403-8201422 | Msa1176170:intron | 10.0% |
| !! | AAAAACTAAATTGGAATAAA+AGG | - | chr8_1:8198699-8198718 | None:intergenic | 15.0% |
| !!! | ATAAATTTATACTCTTTTTG+AGG | - | chr8_1:8199011-8199030 | None:intergenic | 15.0% |
| !! | TTGTAGTTAAAAAAAAATTG+GGG | + | chr8_1:8199332-8199351 | Msa1176170:intron | 15.0% |
| !!! | AATATGTTTTGATAATTAGA+CGG | - | chr8_1:8199538-8199557 | None:intergenic | 15.0% |
| !!! | TTTTTTAAACATAAGTATTG+TGG | + | chr8_1:8199897-8199916 | Msa1176170:intron | 15.0% |
| !! | TTTAAATTAGTAAACTCTTA+TGG | + | chr8_1:8200016-8200035 | Msa1176170:intron | 15.0% |
| !! | TTAAATTAGTAAACTCTTAT+GGG | + | chr8_1:8200017-8200036 | Msa1176170:intron | 15.0% |
| !!! | TTTCTGTTTTTTTTCTTTTT+CGG | + | chr8_1:8200676-8200695 | Msa1176170:intron | 15.0% |
| !!! | AGAGATTTTAAAAAGTAAAT+AGG | - | chr8_1:8200843-8200862 | None:intergenic | 15.0% |
| !! | TATAAATTTATGTTGTTAGA+TGG | + | chr8_1:8201344-8201363 | Msa1176170:intron | 15.0% |
| !! | TAATAATCTATATCAACATA+AGG | + | chr8_1:8202509-8202528 | Msa1176170:three_prime_UTR | 15.0% |
| !!! | ATATCTCAAATATTTTGAAA+TGG | + | chr8_1:8202652-8202671 | Msa1176170:three_prime_UTR | 15.0% |
| !!! | ATTTTAAGAACTGAAAATGA+AGG | - | chr8_1:8197936-8197955 | None:intergenic | 20.0% |
| !!! | TTATGTTATTGTCTAGTTTT+TGG | + | chr8_1:8198489-8198508 | Msa1176170:intron | 20.0% |
| !! | TAAATTGGAATAAAAGGTTA+TGG | - | chr8_1:8198693-8198712 | None:intergenic | 20.0% |
| !!! | TTTTTCAATTTTTTTTGGCT+TGG | + | chr8_1:8198722-8198741 | Msa1176170:intron | 20.0% |
| !!! | TTTTAAACTTTCTCGATTTT+GGG | - | chr8_1:8198858-8198877 | None:intergenic | 20.0% |
| !!! | TTTTTAAACTTTCTCGATTT+TGG | - | chr8_1:8198859-8198878 | None:intergenic | 20.0% |
| !! | TAAACATTCAATCTCTTATT+GGG | - | chr8_1:8198969-8198988 | None:intergenic | 20.0% |
| !! | TTAAACATTCAATCTCTTAT+TGG | - | chr8_1:8198970-8198989 | None:intergenic | 20.0% |
| !! | TGTAGTTAAAAAAAAATTGG+GGG | + | chr8_1:8199333-8199352 | Msa1176170:intron | 20.0% |
| !! | ACAATATTAAAGCAAAATGT+TGG | - | chr8_1:8199360-8199379 | None:intergenic | 20.0% |
| !!! | TTTTGCTTTAATATTGTATG+TGG | + | chr8_1:8199363-8199382 | Msa1176170:intron | 20.0% |
| !!! | GCATCTAATTTTATACTAAT+TGG | + | chr8_1:8199385-8199404 | Msa1176170:intron | 20.0% |
| !!! | TTTAACTTGTTTGCATTAAA+AGG | + | chr8_1:8199408-8199427 | Msa1176170:intron | 20.0% |
| !!! | TTTGAATTTGCTGTAAAAAT+TGG | + | chr8_1:8199457-8199476 | Msa1176170:intron | 20.0% |
| !! | AAAAATTGGATAAAGTTACA+TGG | + | chr8_1:8199471-8199490 | Msa1176170:intron | 20.0% |
| !! | AATGATGAGAGAAAAAAAAA+AGG | - | chr8_1:8199583-8199602 | None:intergenic | 20.0% |
| !! | AAAAAAAAAACAGAAAGACA+TGG | + | chr8_1:8200431-8200450 | Msa1176170:intron | 20.0% |
| !! | AAAAAAAAACAGTAGAATTG+TGG | + | chr8_1:8200520-8200539 | Msa1176170:intron | 20.0% |
| !! | AAAAAAAACAGTAGAATTGT+GGG | + | chr8_1:8200521-8200540 | Msa1176170:intron | 20.0% |
| !!! | TTCTGTTTTTTTTCTTTTTC+GGG | + | chr8_1:8200677-8200696 | Msa1176170:intron | 20.0% |
| !!! | TACTTTTTAAAATCTCTTAG+AGG | + | chr8_1:8200846-8200865 | Msa1176170:intron | 20.0% |
| !! | TATTTATTAGTAGCAATGTA+GGG | - | chr8_1:8201019-8201038 | None:intergenic | 20.0% |
| !! | TTATTTATTAGTAGCAATGT+AGG | - | chr8_1:8201020-8201039 | None:intergenic | 20.0% |
| !!! | ATTTCTCTCTAAGATTAAAA+TGG | - | chr8_1:8201269-8201288 | None:intergenic | 20.0% |
| !! | GTATTCCTATGTTTATTATA+GGG | - | chr8_1:8201494-8201513 | None:intergenic | 20.0% |
| !! | TGTATTCCTATGTTTATTAT+AGG | - | chr8_1:8201495-8201514 | None:intergenic | 20.0% |
| !!! | TTTGTACTTTTGTTATTAGT+AGG | + | chr8_1:8201576-8201595 | Msa1176170:intron | 20.0% |
| !!! | ATTTTTCACATGACTAAAAT+GGG | - | chr8_1:8201781-8201800 | None:intergenic | 20.0% |
| !!! | GTTGTTATTTATTATTCTCA+GGG | + | chr8_1:8201956-8201975 | Msa1176170:intron | 20.0% |
| !! | ATTCATTACTTAAGATTCAT+TGG | - | chr8_1:8202437-8202456 | None:intergenic | 20.0% |
| !! | TAAGTAATGAATTTGAACTT+TGG | + | chr8_1:8202445-8202464 | Msa1176170:exon | 20.0% |
| ! | AGGAATATGAATATGATTCA+TGG | + | chr8_1:8198349-8198368 | Msa1176170:intron | 25.0% |
| ! | TGAATATGATTCATGGTATT+AGG | + | chr8_1:8198356-8198375 | Msa1176170:intron | 25.0% |
| ! | GAATATGATTCATGGTATTA+GGG | + | chr8_1:8198357-8198376 | Msa1176170:intron | 25.0% |
| ! | TAGAATACACATTGAATTCA+GGG | - | chr8_1:8198535-8198554 | None:intergenic | 25.0% |
| ! | ATAGAATACACATTGAATTC+AGG | - | chr8_1:8198536-8198555 | None:intergenic | 25.0% |
| !! | TGATCTGTCAATAATTTGTA+TGG | + | chr8_1:8198592-8198611 | Msa1176170:intron | 25.0% |
| !! | ATGTAGTCATTCTAATTTGT+AGG | - | chr8_1:8198807-8198826 | None:intergenic | 25.0% |
| ! | TTAATACTCACTCTCTAATT+GGG | + | chr8_1:8198904-8198923 | Msa1176170:intron | 25.0% |
| !! | TTAAATCAATGTGAAGTGTT+GGG | + | chr8_1:8198927-8198946 | Msa1176170:intron | 25.0% |
| !!! | GAAATTAGATGGATTTTTGA+AGG | - | chr8_1:8199053-8199072 | None:intergenic | 25.0% |
| ! | ATGATGCAAAAAAACTGTAA+TGG | - | chr8_1:8199087-8199106 | None:intergenic | 25.0% |
| ! | TTAGACTCTATTTATATCAG+TGG | - | chr8_1:8199437-8199456 | None:intergenic | 25.0% |
| !!! | TAAAGTTACATGGTTTTAGA+AGG | + | chr8_1:8199481-8199500 | Msa1176170:intron | 25.0% |
| ! | CATATTCATACTGTGAAAAT+TGG | + | chr8_1:8199552-8199571 | Msa1176170:intron | 25.0% |
| ! | CACTAAAAGTTAAAAATCCA+TGG | - | chr8_1:8199801-8199820 | None:intergenic | 25.0% |
| ! | ATCAATGAAACTATAATGCT+AGG | + | chr8_1:8199853-8199872 | Msa1176170:intron | 25.0% |
| ! | AAATATCCAACATTCTAACT+TGG | - | chr8_1:8199935-8199954 | None:intergenic | 25.0% |
| ! | AATTTGCAAAGATTTAACCA+GGG | - | chr8_1:8200224-8200243 | None:intergenic | 25.0% |
| ! | AGAAAAAAAACAGAAAGACA+CGG | - | chr8_1:8200672-8200691 | None:intergenic | 25.0% |
| !!! | TTTTTAAAATCTCTTAGAGG+AGG | + | chr8_1:8200849-8200868 | Msa1176170:intron | 25.0% |
| ! | AGTATTTCATATTACTCAGT+GGG | + | chr8_1:8200965-8200984 | Msa1176170:intron | 25.0% |
| ! | TTCTTAAACGAAATAATCAG+TGG | - | chr8_1:8201062-8201081 | None:intergenic | 25.0% |
| ! | GTATTTATCATGTTACTGAT+GGG | - | chr8_1:8201189-8201208 | None:intergenic | 25.0% |
| ! | TACTTTAAACAAACGCATTT+CGG | - | chr8_1:8201388-8201407 | None:intergenic | 25.0% |
| ! | ATTACAATGGAATACAAGTT+AGG | - | chr8_1:8201627-8201646 | None:intergenic | 25.0% |
| ! | AACTTGTATTCCATTGTAAT+AGG | + | chr8_1:8201627-8201646 | Msa1176170:intron | 25.0% |
| ! | ACATCATATACCTATTACAA+TGG | - | chr8_1:8201640-8201659 | None:intergenic | 25.0% |
| !! | CATTTTTCACATGACTAAAA+TGG | - | chr8_1:8201782-8201801 | None:intergenic | 25.0% |
| !!! | CATTTTAGTCATGTGAAAAA+TGG | + | chr8_1:8201780-8201799 | Msa1176170:intron | 25.0% |
| !!! | CTGTCTCAAATTATTTTTCT+CGG | + | chr8_1:8201924-8201943 | Msa1176170:intron | 25.0% |
| !!! | CGTTGTTATTTATTATTCTC+AGG | + | chr8_1:8201955-8201974 | Msa1176170:intron | 25.0% |
| !!! | TGTGTTTTATTATCATGTAG+AGG | + | chr8_1:8202563-8202582 | Msa1176170:three_prime_UTR | 25.0% |
| !!! | GTGTTTTATTATCATGTAGA+GGG | + | chr8_1:8202564-8202583 | Msa1176170:three_prime_UTR | 25.0% |
| !! | TTTGTGTTCTTGATTTTCTA+TGG | + | chr8_1:8202589-8202608 | Msa1176170:three_prime_UTR | 25.0% |
| ACTGAGAATGATTGTGATAT+AGG | + | chr8_1:8198329-8198348 | Msa1176170:intron | 30.0% | |
| CATTAGATCATGTCATGATA+TGG | - | chr8_1:8198649-8198668 | None:intergenic | 30.0% | |
| ! | TCTAATTTGTAGGAAGATCA+AGG | - | chr8_1:8198797-8198816 | None:intergenic | 30.0% |
| GTTAATACTCACTCTCTAAT+TGG | + | chr8_1:8198903-8198922 | Msa1176170:intron | 30.0% | |
| GTTAAATCAATGTGAAGTGT+TGG | + | chr8_1:8198926-8198945 | Msa1176170:intron | 30.0% | |
| !! | ATGGATTTTTGAAGGAAATG+AGG | - | chr8_1:8199045-8199064 | None:intergenic | 30.0% |
| TTAACATCACGGAAATTAGA+TGG | - | chr8_1:8199064-8199083 | None:intergenic | 30.0% | |
| AACTGTAATGGTTAACATCA+CGG | - | chr8_1:8199075-8199094 | None:intergenic | 30.0% | |
| ! | TGCATACATATTAAGAGTGT+CGG | - | chr8_1:8199202-8199221 | None:intergenic | 30.0% |
| !! | TTTCTCTCATCATTTTGACA+TGG | + | chr8_1:8199589-8199608 | Msa1176170:intron | 30.0% |
| ! | TATATTTTGCACAGTTGCAA+AGG | - | chr8_1:8199618-8199637 | None:intergenic | 30.0% |
| AATTGCTAAAGAGTGAAGAA+CGG | - | chr8_1:8199752-8199771 | None:intergenic | 30.0% | |
| TCATTACCAAGTTAGAATGT+TGG | + | chr8_1:8199926-8199945 | Msa1176170:intron | 30.0% | |
| ! | AGTGTTGAAAACATCTACAA+TGG | - | chr8_1:8199987-8200006 | None:intergenic | 30.0% |
| ATGATTAATCTAGTAACAGC+TGG | - | chr8_1:8200134-8200153 | None:intergenic | 30.0% | |
| GAATTTGCAAAGATTTAACC+AGG | - | chr8_1:8200225-8200244 | None:intergenic | 30.0% | |
| GAGTATTTCATATTACTCAG+TGG | + | chr8_1:8200964-8200983 | Msa1176170:intron | 30.0% | |
| GTATTTCATATTACTCAGTG+GGG | + | chr8_1:8200966-8200985 | Msa1176170:intron | 30.0% | |
| TATTTCATATTACTCAGTGG+GGG | + | chr8_1:8200967-8200986 | Msa1176170:intron | 30.0% | |
| CGTATTTATCATGTTACTGA+TGG | - | chr8_1:8201190-8201209 | None:intergenic | 30.0% | |
| AATACGATCTTTCATATGAG+TGG | + | chr8_1:8201204-8201223 | Msa1176170:intron | 30.0% | |
| GAGAAATATGAACTCATCAT+TGG | + | chr8_1:8201282-8201301 | Msa1176170:intron | 30.0% | |
| TTAGATGGCATAAACTACAT+TGG | + | chr8_1:8201359-8201378 | Msa1176170:intron | 30.0% | |
| TAGCACCCTATAATAAACAT+AGG | + | chr8_1:8201486-8201505 | Msa1176170:intron | 30.0% | |
| ACACATTCACATGAATGAAT+GGG | - | chr8_1:8201527-8201546 | None:intergenic | 30.0% | |
| AACACATTCACATGAATGAA+TGG | - | chr8_1:8201528-8201547 | None:intergenic | 30.0% | |
| ! | ATATGATGTTACCCCATTTT+TGG | + | chr8_1:8201651-8201670 | Msa1176170:CDS | 30.0% |
| ! | TCATGTCTTTAAAGAAGGTA+GGG | + | chr8_1:8201895-8201914 | Msa1176170:intron | 30.0% |
| TGAGTTGCTGAAAAAAACTA+CGG | - | chr8_1:8201995-8202014 | None:intergenic | 30.0% | |
| ! | TTTTCTTGCTCTCTTCTTAT+AGG | - | chr8_1:8202087-8202106 | None:intergenic | 30.0% |
| ACATTCAACTAACAATCTTC+TGG | + | chr8_1:8202138-8202157 | Msa1176170:intron | 30.0% | |
| !! | ATGATGGAAAAGTACTATGT+CGG | + | chr8_1:8202229-8202248 | Msa1176170:CDS | 30.0% |
| GAGATATTATATCAGAGTCA+TGG | - | chr8_1:8202639-8202658 | None:intergenic | 30.0% | |
| !! | TACAAGATTTTGACAGAGGT+TGG | - | chr8_1:8197886-8197905 | None:intergenic | 35.0% |
| !! | TGCTTACAAGATTTTGACAG+AGG | - | chr8_1:8197890-8197909 | None:intergenic | 35.0% |
| AATCTTGCAGTTGAAGAAGA+TGG | + | chr8_1:8198055-8198074 | Msa1176170:intron | 35.0% | |
| ATCTTGCAGTTGAAGAAGAT+GGG | + | chr8_1:8198056-8198075 | Msa1176170:intron | 35.0% | |
| ATCAGAGACTTTAACCTTTG+AGG | + | chr8_1:8198085-8198104 | Msa1176170:CDS | 35.0% | |
| ACAATAACAAGAACGATTGC+TGG | + | chr8_1:8198120-8198139 | Msa1176170:CDS | 35.0% | |
| CTGGATCATAGTCAACAAAA+AGG | + | chr8_1:8198139-8198158 | Msa1176170:CDS | 35.0% | |
| !!! | GGTATTAGGGTTTTAAACTG+CGG | + | chr8_1:8198370-8198389 | Msa1176170:intron | 35.0% |
| GACAGATCAAAATACTCTTG+TGG | - | chr8_1:8198581-8198600 | None:intergenic | 35.0% | |
| CACTCTTAATATGTATGCAG+TGG | + | chr8_1:8199203-8199222 | Msa1176170:intron | 35.0% | |
| TAATATGTATGCAGTGGTGT+TGG | + | chr8_1:8199209-8199228 | Msa1176170:intron | 35.0% | |
| !! | ATCACATTCTCAGCTTGTTA+TGG | + | chr8_1:8199645-8199664 | Msa1176170:intron | 35.0% |
| !! | TCACATTCTCAGCTTGTTAT+GGG | + | chr8_1:8199646-8199665 | Msa1176170:intron | 35.0% |
| AGATTCAACTTGGTAGAGTT+AGG | - | chr8_1:8199702-8199721 | None:intergenic | 35.0% | |
| CAATGAAGCTAGATTCAACT+TGG | - | chr8_1:8199712-8199731 | None:intergenic | 35.0% | |
| GGACAAATTGACAAATCACA+AGG | - | chr8_1:8199780-8199799 | None:intergenic | 35.0% | |
| ! | GTGATTTGTCAATTTGTCCA+TGG | + | chr8_1:8199781-8199800 | Msa1176170:intron | 35.0% |
| ! | CTATAATGCTAGGTCTTTTC+TGG | + | chr8_1:8199863-8199882 | Msa1176170:intron | 35.0% |
| !! | TTGAGTTGATAACCTTGCTT+TGG | + | chr8_1:8200074-8200093 | Msa1176170:intron | 35.0% |
| AGATTAGATTCTCCAAAGCA+AGG | - | chr8_1:8200089-8200108 | None:intergenic | 35.0% | |
| GAAGACTTTGCTACTCTAAA+CGG | - | chr8_1:8200196-8200215 | None:intergenic | 35.0% | |
| ! | GCTGATTATGAAGATTGGTT+TGG | - | chr8_1:8200296-8200315 | None:intergenic | 35.0% |
| TTTCAAAACGACTGCTATGT+AGG | + | chr8_1:8200548-8200567 | Msa1176170:intron | 35.0% | |
| !!! | AGTTTTGAGATGAGAAAGCA+AGG | - | chr8_1:8200774-8200793 | None:intergenic | 35.0% |
| GAGTAATATGAAATACTCCG+TGG | - | chr8_1:8200962-8200981 | None:intergenic | 35.0% | |
| TTCGTTTAAGAACTAGCATC+AGG | + | chr8_1:8201070-8201089 | Msa1176170:intron | 35.0% | |
| ! | GAACTCATCATTGGTTACTT+CGG | + | chr8_1:8201291-8201310 | Msa1176170:intron | 35.0% |
| TATTTAGGAATAACTTCCCC+AGG | + | chr8_1:8201418-8201437 | Msa1176170:intron | 35.0% | |
| ATTTCCATCATTGCTTTCCT+GGG | - | chr8_1:8201438-8201457 | None:intergenic | 35.0% | |
| AATTTCCATCATTGCTTTCC+TGG | - | chr8_1:8201439-8201458 | None:intergenic | 35.0% | |
| !! | GTCTCGGTTTATTTTTCTCA+GGG | - | chr8_1:8201846-8201865 | None:intergenic | 35.0% |
| !! | TGTCTCGGTTTATTTTTCTC+AGG | - | chr8_1:8201847-8201866 | None:intergenic | 35.0% |
| ! | TTGCCTCATGTCTTTAAAGA+AGG | + | chr8_1:8201890-8201909 | Msa1176170:intron | 35.0% |
| ! | CTACCTTCTTTAAAGACATG+AGG | - | chr8_1:8201896-8201915 | None:intergenic | 35.0% |
| ! | CTCATGTCTTTAAAGAAGGT+AGG | + | chr8_1:8201894-8201913 | Msa1176170:intron | 35.0% |
| ! | CATGTCTTTAAAGAAGGTAG+GGG | + | chr8_1:8201896-8201915 | Msa1176170:intron | 35.0% |
| GAGTTGCTGAAAAAAACTAC+GGG | - | chr8_1:8201994-8202013 | None:intergenic | 35.0% | |
| ! | AATCTTCTGGTGTTTTACAC+AGG | + | chr8_1:8202151-8202170 | Msa1176170:intron | 35.0% |
| ! | ATCTTCTGGTGTTTTACACA+GGG | + | chr8_1:8202152-8202171 | Msa1176170:intron | 35.0% |
| !! | TGATGGAAAAGTACTATGTC+GGG | + | chr8_1:8202230-8202249 | Msa1176170:CDS | 35.0% |
| CTTATGGTAGATGCTTGAAT+TGG | - | chr8_1:8202307-8202326 | None:intergenic | 35.0% | |
| ! | AGAAGATTGATTGCTGCTTA+TGG | - | chr8_1:8202323-8202342 | None:intergenic | 35.0% |
| ATAAGCAGCAATCAATCTTC+TGG | + | chr8_1:8202322-8202341 | Msa1176170:CDS | 35.0% | |
| !!! | GGCTATAGTTTTAGACTCTT+TGG | + | chr8_1:8202466-8202485 | Msa1176170:three_prime_UTR | 35.0% |
| ! | ACATAAGGCAGTGTTCTTTT+TGG | + | chr8_1:8202524-8202543 | Msa1176170:three_prime_UTR | 35.0% |
| ! | GACTTTAACCTTTGAGGATG+TGG | + | chr8_1:8198091-8198110 | Msa1176170:CDS | 40.0% |
| ! | CAAAATACTCTTGTGGACTG+TGG | - | chr8_1:8198574-8198593 | None:intergenic | 40.0% |
| !! | AGTATTAACGAGAGTGTTGC+TGG | - | chr8_1:8198892-8198911 | None:intergenic | 40.0% |
| !! | TGAAGTGTTGGGACATACAT+TGG | + | chr8_1:8198938-8198957 | Msa1176170:intron | 40.0% |
| ACAGGGGGTTAATAGACATT+TGG | - | chr8_1:8199121-8199140 | None:intergenic | 40.0% | |
| TATTAACCCCCTGTTATGAG+AGG | + | chr8_1:8199127-8199146 | Msa1176170:intron | 40.0% | |
| TTCCTTACCTCTCATAACAG+GGG | - | chr8_1:8199137-8199156 | None:intergenic | 40.0% | |
| GTTCCTTACCTCTCATAACA+GGG | - | chr8_1:8199138-8199157 | None:intergenic | 40.0% | |
| AGTTCCTTACCTCTCATAAC+AGG | - | chr8_1:8199139-8199158 | None:intergenic | 40.0% | |
| AGGTAAGGAACTATGATGCA+CGG | + | chr8_1:8199147-8199166 | Msa1176170:intron | 40.0% | |
| !!! | GTGAGGATAATGGGAGTTTT+AGG | + | chr8_1:8199299-8199318 | Msa1176170:intron | 40.0% |
| !!! | TAATGGGAGTTTTAGGCACA+AGG | + | chr8_1:8199306-8199325 | Msa1176170:intron | 40.0% |
| GACTTTAGACGCTAGAATAC+TGG | - | chr8_1:8200164-8200183 | None:intergenic | 40.0% | |
| AGCCATGTTCACTGAAGTAA+CGG | + | chr8_1:8200268-8200287 | Msa1176170:intron | 40.0% | |
| TTCCGTTACTTCAGTGAACA+TGG | - | chr8_1:8200273-8200292 | None:intergenic | 40.0% | |
| GTGCAGCTGATTATGAAGAT+TGG | - | chr8_1:8200301-8200320 | None:intergenic | 40.0% | |
| GACTCTGCAAAGACACAATT+TGG | + | chr8_1:8200458-8200477 | Msa1176170:intron | 40.0% | |
| AAAGACACAATTTGGCGACA+CGG | + | chr8_1:8200466-8200485 | Msa1176170:intron | 40.0% | |
| AACGACTGCTATGTAGGATT+TGG | + | chr8_1:8200554-8200573 | Msa1176170:intron | 40.0% | |
| TGCAATTTACTCTGAGCACT+TGG | + | chr8_1:8200876-8200895 | Msa1176170:intron | 40.0% | |
| GCAATTTACTCTGAGCACTT+GGG | + | chr8_1:8200877-8200896 | Msa1176170:intron | 40.0% | |
| CAATTTACTCTGAGCACTTG+GGG | + | chr8_1:8200878-8200897 | Msa1176170:intron | 40.0% | |
| ! | AGACAGCAAACTTTAAGGGA+GGG | - | chr8_1:8200910-8200929 | None:intergenic | 40.0% |
| ! | TAGACAGCAAACTTTAAGGG+AGG | - | chr8_1:8200911-8200930 | None:intergenic | 40.0% |
| !! | TCCCTTAAAGTTTGCTGTCT+AGG | + | chr8_1:8200910-8200929 | Msa1176170:intron | 40.0% |
| CCCTAGACAGCAAACTTTAA+GGG | - | chr8_1:8200914-8200933 | None:intergenic | 40.0% | |
| !! | CCCTTAAAGTTTGCTGTCTA+GGG | + | chr8_1:8200911-8200930 | Msa1176170:intron | 40.0% |
| !! | CCTTAAAGTTTGCTGTCTAG+GGG | + | chr8_1:8200912-8200931 | Msa1176170:intron | 40.0% |
| !! | CTTAAAGTTTGCTGTCTAGG+GGG | + | chr8_1:8200913-8200932 | Msa1176170:intron | 40.0% |
| CAAGCCACTGAAATATTCCA+CGG | + | chr8_1:8200942-8200961 | Msa1176170:intron | 40.0% | |
| TACTCCGTGGAATATTTCAG+TGG | - | chr8_1:8200949-8200968 | None:intergenic | 40.0% | |
| TAGTAGCAATGTAGGGACTT+GGG | - | chr8_1:8201012-8201031 | None:intergenic | 40.0% | |
| TTAGTAGCAATGTAGGGACT+TGG | - | chr8_1:8201013-8201032 | None:intergenic | 40.0% | |
| !! | TTGGCTGGTTTATAGACCAA+CGG | + | chr8_1:8201148-8201167 | Msa1176170:intron | 40.0% |
| TTGGTTACTTCGGCAAACTT+CGG | + | chr8_1:8201301-8201320 | Msa1176170:intron | 40.0% | |
| TTTCCATCATTGCTTTCCTG+GGG | - | chr8_1:8201437-8201456 | None:intergenic | 40.0% | |
| GGGATGATCATCCAAAAATG+GGG | - | chr8_1:8201665-8201684 | None:intergenic | 40.0% | |
| CGGGATGATCATCCAAAAAT+GGG | - | chr8_1:8201666-8201685 | None:intergenic | 40.0% | |
| !! | CCATTTTTGGATGATCATCC+CGG | + | chr8_1:8201664-8201683 | Msa1176170:CDS | 40.0% |
| AGACATGAGGCAAAGTTGTT+CGG | - | chr8_1:8201883-8201902 | None:intergenic | 40.0% | |
| CTTCTTATAGGCTATGACAG+AGG | - | chr8_1:8202075-8202094 | None:intergenic | 40.0% | |
| !!! | ACCACCGATTTTGAAGATGT+TGG | + | chr8_1:8202184-8202203 | Msa1176170:CDS | 40.0% |
| GTGGCCAACATCTTCAAAAT+CGG | - | chr8_1:8202191-8202210 | None:intergenic | 40.0% | |
| !! | GATGGAAAAGTACTATGTCG+GGG | + | chr8_1:8202231-8202250 | Msa1176170:CDS | 40.0% |
| GCATTTGCTCTTCAGTACTA+TGG | + | chr8_1:8202397-8202416 | Msa1176170:CDS | 40.0% | |
| CGCAATCTAGCATGAATAAG+AGG | - | chr8_1:8202615-8202634 | None:intergenic | 40.0% | |
| TGACGTCGCAGTAATGATTG+TGG | + | chr8_1:8198623-8198642 | Msa1176170:intron | 45.0% | |
| TCCTTACCTCTCATAACAGG+GGG | - | chr8_1:8199136-8199155 | None:intergenic | 45.0% | |
| TGTCTCCTTGTCTGTTGTGT+CGG | + | chr8_1:8199260-8199279 | Msa1176170:intron | 45.0% | |
| TTATCCTCACCTGTCAAGCA+CGG | - | chr8_1:8199289-8199308 | None:intergenic | 45.0% | |
| TGCTTGACAGGTGAGGATAA+TGG | + | chr8_1:8199289-8199308 | Msa1176170:intron | 45.0% | |
| GCTTGACAGGTGAGGATAAT+GGG | + | chr8_1:8199290-8199309 | Msa1176170:intron | 45.0% | |
| !! | TCTCAGCTTGTTATGGGAGA+TGG | + | chr8_1:8199652-8199671 | Msa1176170:intron | 45.0% |
| !! | ATGCTAGGTCTTTTCTGGTG+TGG | + | chr8_1:8199868-8199887 | Msa1176170:intron | 45.0% |
| ACTCTTATGGGTAGTGTCTG+CGG | + | chr8_1:8200029-8200048 | Msa1176170:intron | 45.0% | |
| AGCAAAGTCTTCGATATCCC+TGG | + | chr8_1:8200204-8200223 | Msa1176170:intron | 45.0% | |
| CCCCTAGACAGCAAACTTTA+AGG | - | chr8_1:8200915-8200934 | None:intergenic | 45.0% | |
| CGTGGAATATTTCAGTGGCT+TGG | - | chr8_1:8200944-8200963 | None:intergenic | 45.0% | |
| TATTACTCAGTGGGGGACTT+CGG | + | chr8_1:8200974-8200993 | Msa1176170:intron | 45.0% | |
| TCAGTGGTAGAACTGCTTAG+TGG | - | chr8_1:8201046-8201065 | None:intergenic | 45.0% | |
| CAACTGTGCACCTTCCAAAT+GGG | + | chr8_1:8201121-8201140 | Msa1176170:intron | 45.0% | |
| TTCGGACAGGTCATGATATC+TGG | + | chr8_1:8201319-8201338 | Msa1176170:intron | 45.0% | |
| GGGTGCTAGAAAATTCACTC+AGG | - | chr8_1:8201474-8201493 | None:intergenic | 45.0% | |
| CCGGGATGATCATCCAAAAA+TGG | - | chr8_1:8201667-8201686 | None:intergenic | 45.0% | |
| ! | TTTTTGGATGATCATCCCGG+AGG | + | chr8_1:8201667-8201686 | Msa1176170:CDS | 45.0% |
| GAGGCTTTACTTTCTGCTAC+AGG | + | chr8_1:8201694-8201713 | Msa1176170:intron | 45.0% | |
| GGGTAGGAACAAAGTTGTCT+CGG | - | chr8_1:8201862-8201881 | None:intergenic | 45.0% | |
| GACATGAGGCAAAGTTGTTC+GGG | - | chr8_1:8201882-8201901 | None:intergenic | 45.0% | |
| ! | TCTGGTGTTTTACACAGGGA+AGG | + | chr8_1:8202156-8202175 | Msa1176170:intron | 45.0% |
| GCCAACATCTTCAAAATCGG+TGG | - | chr8_1:8202188-8202207 | None:intergenic | 45.0% | |
| !! | GATGCTTGAATTGGTGCTGT+TGG | - | chr8_1:8202298-8202317 | None:intergenic | 45.0% |
| GTTGAAGTTCTTGCAGTACC+TGG | + | chr8_1:8202351-8202370 | Msa1176170:CDS | 45.0% | |
| GCAGATCCCAATATCAGCAA+CGG | - | chr8_1:8202379-8202398 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTCAATTTTTTT+TGG | + | chr8_1:8198717-8198736 | Msa1176170:intron | 5.0% |
| GTGCTTAGCCACATCCTCAA+AGG | - | chr8_1:8198102-8198121 | None:intergenic | 50.0% | |
| TGCGGTCTCAGTAACGATTG+TGG | + | chr8_1:8198388-8198407 | Msa1176170:intron | 50.0% | |
| TCACATCACGAGCGATCTGA+TGG | + | chr8_1:8198411-8198430 | Msa1176170:intron | 50.0% | |
| ACCCCCTGTTATGAGAGGTA+AGG | + | chr8_1:8199132-8199151 | Msa1176170:intron | 50.0% | |
| ACGCGACACGCTTAATGCTA+AGG | - | chr8_1:8199176-8199195 | None:intergenic | 50.0% | |
| GGAATCCGACACAACAGACA+AGG | - | chr8_1:8199268-8199287 | None:intergenic | 50.0% | |
| AGAGTGAAGAACGGTGTGAC+TGG | - | chr8_1:8199743-8199762 | None:intergenic | 50.0% | |
| GCTGCTTACAGGACAAGCTA+TGG | - | chr8_1:8200251-8200270 | None:intergenic | 50.0% | |
| CAGTGAACATGGCTGCTTAC+AGG | - | chr8_1:8200262-8200281 | None:intergenic | 50.0% | |
| TGAAGCACAGACACTGCTGT+TGG | + | chr8_1:8200328-8200347 | Msa1176170:intron | 50.0% | |
| GCATCTGACACATGTCGTAC+CGG | - | chr8_1:8200388-8200407 | None:intergenic | 50.0% | |
| GTACGACATGTGTCAGATGC+AGG | + | chr8_1:8200388-8200407 | Msa1176170:intron | 50.0% | |
| GACACGTGTCTTTGCAGTGA+AGG | - | chr8_1:8200621-8200640 | None:intergenic | 50.0% | |
| GACACTGCAAAGACACGGTT+TGG | - | chr8_1:8200645-8200664 | None:intergenic | 50.0% | |
| GAAAGCAAGGACACTGCTGT+TGG | - | chr8_1:8200761-8200780 | None:intergenic | 50.0% | |
| TTTACTCTGAGCACTTGGGG+AGG | + | chr8_1:8200881-8200900 | Msa1176170:intron | 50.0% | |
| TTACTCTGAGCACTTGGGGA+GGG | + | chr8_1:8200882-8200901 | Msa1176170:intron | 50.0% | |
| ! | CCATTTGGAAGGTGCACAGT+TGG | - | chr8_1:8201123-8201142 | None:intergenic | 50.0% |
| CCAACTGTGCACCTTCCAAA+TGG | + | chr8_1:8201120-8201139 | Msa1176170:intron | 50.0% | |
| CACCTTCCAAATGGGTGGAT+TGG | + | chr8_1:8201129-8201148 | Msa1176170:intron | 50.0% | |
| AGCCAATCCACCCATTTGGA+AGG | - | chr8_1:8201134-8201153 | None:intergenic | 50.0% | |
| !! | TTCCAAATGGGTGGATTGGC+TGG | + | chr8_1:8201133-8201152 | Msa1176170:intron | 50.0% |
| AACCAGCCAATCCACCCATT+TGG | - | chr8_1:8201138-8201157 | None:intergenic | 50.0% | |
| TGTTACTGATGGGACCGAAG+AGG | - | chr8_1:8201179-8201198 | None:intergenic | 50.0% | |
| TACTTCGGCAAACTTCGGAC+AGG | + | chr8_1:8201306-8201325 | Msa1176170:intron | 50.0% | |
| CTTCCCCAGGAAAGCAATGA+TGG | + | chr8_1:8201431-8201450 | Msa1176170:intron | 50.0% | |
| AAGTAAAGCCTCGTCACCTC+CGG | - | chr8_1:8201686-8201705 | None:intergenic | 50.0% | |
| TGAGGCAAAGTTGTTCGGGT+AGG | - | chr8_1:8201878-8201897 | None:intergenic | 50.0% | |
| AGATGTTGGCCACAGTGACT+CGG | + | chr8_1:8202198-8202217 | Msa1176170:CDS | 50.0% | |
| ! | TGACTCGGCAACAGAGATGA+TGG | + | chr8_1:8202213-8202232 | Msa1176170:CDS | 50.0% |
| !! | GGAAAAGTACTATGTCGGGG+AGG | + | chr8_1:8202234-8202253 | Msa1176170:CDS | 50.0% |
| GGATTGTTCTTAGCTGCTGC+TGG | - | chr8_1:8202277-8202296 | None:intergenic | 50.0% | |
| !! | CTGGTGCCGTTGCTGATATT+GGG | + | chr8_1:8202370-8202389 | Msa1176170:CDS | 50.0% |
| GCGATCTGATGGAGCTGATG+TGG | + | chr8_1:8198422-8198441 | Msa1176170:intron | 55.0% | |
| CCTCGATTGTTGTCACGCTG+CGG | + | chr8_1:8198445-8198464 | Msa1176170:intron | 55.0% | |
| TGTCGGATTCCGTGCTTGAC+AGG | + | chr8_1:8199277-8199296 | Msa1176170:intron | 55.0% | |
| GATTCCGTGCTTGACAGGTG+AGG | + | chr8_1:8199282-8199301 | Msa1176170:intron | 55.0% | |
| CAGCAGTGTCTGTGCTTCAG+AGG | - | chr8_1:8200327-8200346 | None:intergenic | 55.0% | |
| AGCACAGACACTGCTGTTGG+TGG | + | chr8_1:8200331-8200350 | Msa1176170:intron | 55.0% | |
| GCACAGACACTGCTGTTGGT+GGG | + | chr8_1:8200332-8200351 | Msa1176170:intron | 55.0% | |
| CGACATGTGTCAGATGCAGG+TGG | + | chr8_1:8200391-8200410 | Msa1176170:intron | 55.0% | |
| CATGTGTCAGATGCAGGTGG+CGG | + | chr8_1:8200394-8200413 | Msa1176170:intron | 55.0% | |
| GCAGCGACACTGCAAAGACA+CGG | - | chr8_1:8200650-8200669 | None:intergenic | 55.0% | |
| ! | GTCGTACTGGTGTCTGACAC+CGG | + | chr8_1:8200725-8200744 | Msa1176170:intron | 55.0% |
| ! | TCGTACTGGTGTCTGACACC+GGG | + | chr8_1:8200726-8200745 | Msa1176170:intron | 55.0% |
| ! | TGCTGTTGGTGGACATGTCC+CGG | - | chr8_1:8200747-8200766 | None:intergenic | 55.0% |
| AGCAAGGACACTGCTGTTGG+TGG | - | chr8_1:8200758-8200777 | None:intergenic | 55.0% | |
| TTGGCGACATGGGAATCAGC+AGG | - | chr8_1:8201104-8201123 | None:intergenic | 55.0% | |
| AGGTGCACAGTTGGCGACAT+GGG | - | chr8_1:8201114-8201133 | None:intergenic | 55.0% | |
| AAGGTGCACAGTTGGCGACA+TGG | - | chr8_1:8201115-8201134 | None:intergenic | 55.0% | |
| CTGTGCACCTTCCAAATGGG+TGG | + | chr8_1:8201124-8201143 | Msa1176170:intron | 55.0% | |
| GACCAACGGATCTGCCTCTT+CGG | + | chr8_1:8201162-8201181 | Msa1176170:intron | 55.0% | |
| AGTAAAGCCTCGTCACCTCC+GGG | - | chr8_1:8201685-8201704 | None:intergenic | 55.0% | |
| TCTCTGTTGCCGAGTCACTG+TGG | - | chr8_1:8202210-8202229 | None:intergenic | 55.0% | |
| ! | AGCTGCTGCTGGAAGAGTGT+TGG | - | chr8_1:8202266-8202285 | None:intergenic | 55.0% |
| CCAATATCAGCAACGGCACC+AGG | - | chr8_1:8202372-8202391 | None:intergenic | 55.0% | |
| !! | CCTGGTGCCGTTGCTGATAT+TGG | + | chr8_1:8202369-8202388 | Msa1176170:CDS | 55.0% |
| CCGCAGCGTGACAACAATCG+AGG | - | chr8_1:8198448-8198467 | None:intergenic | 60.0% | |
| !! | TGCTGTTGGTGGGCTTGTCC+CGG | + | chr8_1:8200342-8200361 | Msa1176170:intron | 60.0% |
| GTACGACACGTGCCAGATGC+AGG | - | chr8_1:8200712-8200731 | None:intergenic | 60.0% | |
| GCATCTGGCACGTGTCGTAC+TGG | + | chr8_1:8200712-8200731 | Msa1176170:intron | 60.0% | |
| TGGGGGACTTCGGCACATCA+TGG | + | chr8_1:8200984-8201003 | Msa1176170:intron | 60.0% | |
| GACCGAAGAGGCAGATCCGT+TGG | - | chr8_1:8201167-8201186 | None:intergenic | 60.0% | |
| TGATCATCCCGGAGGTGACG+AGG | + | chr8_1:8201675-8201694 | Msa1176170:intron | 60.0% | |
| !! | TGGTGGGCTTGTCCCGGTGT+CGG | + | chr8_1:8200348-8200367 | Msa1176170:intron | 65.0% |
| TCTGACGCGTGTCCGACACC+GGG | - | chr8_1:8200363-8200382 | None:intergenic | 65.0% | |
| GTCTGACGCGTGTCCGACAC+CGG | - | chr8_1:8200364-8200383 | None:intergenic | 65.0% | |
| GTCGGACACGCGTCAGACAC+CGG | + | chr8_1:8200366-8200385 | Msa1176170:intron | 65.0% | |
| CACGTGCCAGATGCAGGTGG+CGG | - | chr8_1:8200706-8200725 | None:intergenic | 65.0% | |
| CGACACGTGCCAGATGCAGG+TGG | - | chr8_1:8200709-8200728 | None:intergenic | 65.0% | |
| GGGACACCGCCACCTGCATC+TGG | + | chr8_1:8200697-8200716 | Msa1176170:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 8197821 | 8202809 | 8197821 | ID=Msa1176170;Name=Msa1176170 |
| chr8_1 | mRNA | 8197821 | 8202809 | 8197821 | ID=Msa1176170-mRNA-1;Parent=Msa1176170;Name=Msa1176170-mRNA-1;_AED=0.03;_eAED=0.03;_QI=91|0.66|0.75|1|0.33|0.5|4|362|133 |
| chr8_1 | exon | 8197821 | 8197902 | 8197821 | ID=Msa1176170-mRNA-1:exon:2803;Parent=Msa1176170-mRNA-1 |
| chr8_1 | exon | 8198065 | 8198160 | 8198065 | ID=Msa1176170-mRNA-1:exon:2804;Parent=Msa1176170-mRNA-1 |
| chr8_1 | exon | 8201649 | 8201688 | 8201649 | ID=Msa1176170-mRNA-1:exon:2805;Parent=Msa1176170-mRNA-1 |
| chr8_1 | exon | 8202173 | 8202809 | 8202173 | ID=Msa1176170-mRNA-1:exon:2806;Parent=Msa1176170-mRNA-1 |
| chr8_1 | five_prime_UTR | 8197821 | 8197902 | 8197821 | ID=Msa1176170-mRNA-1:five_prime_utr;Parent=Msa1176170-mRNA-1 |
| chr8_1 | five_prime_UTR | 8198065 | 8198073 | 8198065 | ID=Msa1176170-mRNA-1:five_prime_utr;Parent=Msa1176170-mRNA-1 |
| chr8_1 | CDS | 8198074 | 8198160 | 8198074 | ID=Msa1176170-mRNA-1:cds;Parent=Msa1176170-mRNA-1 |
| chr8_1 | CDS | 8201649 | 8201688 | 8201649 | ID=Msa1176170-mRNA-1:cds;Parent=Msa1176170-mRNA-1 |
| chr8_1 | CDS | 8202173 | 8202447 | 8202173 | ID=Msa1176170-mRNA-1:cds;Parent=Msa1176170-mRNA-1 |
| chr8_1 | three_prime_UTR | 8202448 | 8202809 | 8202448 | ID=Msa1176170-mRNA-1:three_prime_utr;Parent=Msa1176170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
