Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0111020 | XP_013467156.1 | 98.785 | 247 | 3 | 0 | 1 | 247 | 1 | 247 | 0.0 | 512 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0111020 | sp|Q9LIQ6|ING1_ARATH | 68.826 | 247 | 64 | 4 | 1 | 247 | 1 | 234 | 7.16e-110 | 318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0111020 | B7FI89 | 98.785 | 247 | 3 | 0 | 1 | 247 | 1 | 247 | 0.0 | 512 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa0111020 | 0.814341 | 1.618655e-51 | -8.615850e-47 |
| Msa0043980 | Msa0111020 | 0.814981 | 1.168094e-51 | -8.615850e-47 |
| Msa0052860 | Msa0111020 | 0.800796 | 1.218481e-48 | -8.615850e-47 |
| Msa0063350 | Msa0111020 | -0.803066 | 4.161779e-49 | -8.615850e-47 |
| Msa0068740 | Msa0111020 | -0.802353 | 5.839737e-49 | -8.615850e-47 |
| Msa0104800 | Msa0111020 | 0.808586 | 2.880435e-50 | -8.615850e-47 |
| Msa0111020 | Msa0151180 | 0.815816 | 7.616956e-52 | -8.615850e-47 |
| Msa0111020 | Msa0187490 | 0.819442 | 1.159123e-52 | -8.615850e-47 |
| Msa0111020 | Msa0280230 | 0.815181 | 1.054439e-51 | -8.615850e-47 |
| Msa0111020 | Msa0281480 | 0.800378 | 1.482187e-48 | -8.615850e-47 |
| Msa0111020 | Msa0291500 | 0.804746 | 1.862710e-49 | -8.615850e-47 |
| Msa0111020 | Msa0300150 | 0.802657 | 5.056224e-49 | -8.615850e-47 |
| Msa0111020 | Msa0335060 | 0.816349 | 5.790966e-52 | -8.615850e-47 |
| Msa0111020 | Msa0376910 | 0.802368 | 5.799955e-49 | -8.615850e-47 |
| Msa0111020 | Msa0379640 | 0.806366 | 8.518220e-50 | -8.615850e-47 |
| Msa0111020 | Msa0412840 | 0.833562 | 4.967675e-56 | -8.615850e-47 |
| Msa0111020 | Msa0436760 | 0.848065 | 7.768859e-60 | -8.615850e-47 |
| Msa0111020 | Msa0457510 | 0.821779 | 3.366996e-53 | -8.615850e-47 |
| Msa0111020 | Msa0484720 | 0.825577 | 4.346316e-54 | -8.615850e-47 |
| Msa0111020 | Msa0575470 | 0.805552 | 1.263110e-49 | -8.615850e-47 |
| Msa0111020 | Msa0608710 | 0.803508 | 3.370886e-49 | -8.615850e-47 |
| Msa0111020 | Msa0705190 | 0.819490 | 1.129984e-52 | -8.615850e-47 |
| Msa0111020 | Msa0711100 | 0.806320 | 8.710303e-50 | -8.615850e-47 |
| Msa0111020 | Msa0715470 | 0.818463 | 1.935072e-52 | -8.615850e-47 |
| Msa0111020 | Msa0748730 | 0.803768 | 2.977927e-49 | -8.615850e-47 |
| Msa0111020 | Msa0750850 | 0.804171 | 2.455470e-49 | -8.615850e-47 |
| Msa0111020 | Msa0820850 | 0.816594 | 5.102144e-52 | -8.615850e-47 |
| Msa0111020 | Msa0861130 | 0.808035 | 3.774754e-50 | -8.615850e-47 |
| Msa0111020 | Msa0876580 | 0.802760 | 4.814687e-49 | -8.615850e-47 |
| Msa0111020 | Msa0897080 | 0.803307 | 3.711063e-49 | -8.615850e-47 |
| Msa0111020 | Msa0923870 | 0.804357 | 2.245540e-49 | -8.615850e-47 |
| Msa0111020 | Msa0932830 | 0.800846 | 1.190136e-48 | -8.615850e-47 |
| Msa0111020 | Msa0971020 | 0.811920 | 5.499395e-51 | -8.615850e-47 |
| Msa0111020 | Msa1024750 | 0.804533 | 2.063835e-49 | -8.615850e-47 |
| Msa0111020 | Msa1039880 | 0.804420 | 2.178705e-49 | -8.615850e-47 |
| Msa0111020 | Msa1055680 | 0.817361 | 3.431696e-52 | -8.615850e-47 |
| Msa0111020 | Msa1063510 | 0.817663 | 2.934191e-52 | -8.615850e-47 |
| Msa0111020 | Msa1102790 | 0.818054 | 2.394654e-52 | -8.615850e-47 |
| Msa0111020 | Msa1109680 | 0.805202 | 1.495927e-49 | -8.615850e-47 |
| Msa0111020 | Msa1207310 | 0.805152 | 1.532379e-49 | -8.615850e-47 |
| Msa0111020 | Msa1215920 | 0.807262 | 5.509347e-50 | -8.615850e-47 |
| Msa0111020 | Msa1270660 | 0.800396 | 1.469594e-48 | -8.615850e-47 |
| Msa0111020 | Msa1270730 | 0.811051 | 8.494114e-51 | -8.615850e-47 |
| Msa0111020 | Msa1276440 | 0.801966 | 7.017228e-49 | -8.615850e-47 |
| Msa0111020 | Msa1331320 | 0.818225 | 2.190280e-52 | -8.615850e-47 |
| Msa0111020 | Msa1374470 | 0.829414 | 5.216815e-55 | -8.615850e-47 |
| Msa0111020 | Msa1403340 | 0.827000 | 1.992132e-54 | -8.615850e-47 |
| Msa0111020 | Msa1428780 | 0.817548 | 3.115060e-52 | -8.615850e-47 |
| Msa0111020 | Msa1440000 | 0.809067 | 2.272778e-50 | -8.615850e-47 |
| Msa0111020 | Msa1444740 | 0.806345 | 8.607195e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0111020 | MtrunA17_Chr1g0169261 | 98.785 | 247 | 3 | 0 | 1 | 247 | 1 | 247 | 0.0 | 512 |
| Msa0111020 | MtrunA17_Chr7g0253141 | 30.556 | 252 | 154 | 5 | 3 | 237 | 9 | 256 | 5.49e-33 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0111020 | AT3G24010.1 | 68.826 | 247 | 64 | 4 | 1 | 247 | 1 | 234 | 7.28e-111 | 318 |
| Msa0111020 | AT1G54390.6 | 37.870 | 169 | 95 | 5 | 76 | 237 | 9 | 174 | 9.85e-32 | 115 |
| Msa0111020 | AT1G54390.4 | 30.400 | 250 | 156 | 7 | 3 | 237 | 9 | 255 | 2.89e-31 | 116 |
| Msa0111020 | AT1G54390.3 | 30.400 | 250 | 156 | 7 | 3 | 237 | 9 | 255 | 2.89e-31 | 116 |
| Msa0111020 | AT1G54390.7 | 37.870 | 169 | 95 | 5 | 76 | 237 | 70 | 235 | 3.16e-31 | 115 |
| Msa0111020 | AT1G54390.8 | 37.870 | 169 | 95 | 5 | 76 | 237 | 70 | 235 | 3.16e-31 | 115 |
| Msa0111020 | AT1G54390.5 | 37.870 | 169 | 95 | 5 | 76 | 237 | 70 | 235 | 3.16e-31 | 115 |
Find 75 sgRNAs with CRISPR-Local
Find 326 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAATGACATTAGGGTTTC+TGG | 0.148796 | 1_3:+24466857 | None:intergenic |
| AAAATAGAGTGGTTTCATTT+TGG | 0.253291 | 1_3:-24462487 | Msa0111020:CDS |
| GCCTATGTAGTTGCGATTGC+TGG | 0.261775 | 1_3:-24462266 | Msa0111020:three_prime_UTR |
| ATTCTTCAAGGAATGACATT+AGG | 0.273206 | 1_3:+24466849 | None:intergenic |
| CCTGATGGTAATACAAAATC+TGG | 0.304519 | 1_3:-24464566 | Msa0111020:CDS |
| TTTACCGTGTCTTTATAGTA+TGG | 0.310313 | 1_3:-24462214 | Msa0111020:three_prime_UTR |
| TACTTCTTATGAAGAATATT+AGG | 0.324596 | 1_3:+24466660 | None:intergenic |
| AAGCAGTATGTGGGTTCATT+TGG | 0.325444 | 1_3:+24462653 | None:intergenic |
| AAGAACAACCAAAAGGAAAA+TGG | 0.346656 | 1_3:-24462450 | Msa0111020:CDS |
| CTGCCGCTGCTGTTGCAGTT+TGG | 0.346888 | 1_3:+24462747 | None:intergenic |
| CCATTTCTCCATAGCTAACT+TGG | 0.349587 | 1_3:+24462624 | None:intergenic |
| GTACAATTGCTGGTGGAAAT+TGG | 0.365022 | 1_3:-24462106 | Msa0111020:three_prime_UTR |
| TTCTTCAAGGAATGACATTA+GGG | 0.365295 | 1_3:+24466850 | None:intergenic |
| GAACGATGCGTTTCGTTTGA+AGG | 0.369048 | 1_3:+24466884 | None:intergenic |
| GGCTGTCCAGGCATACGATT+TGG | 0.377614 | 1_3:-24465382 | Msa0111020:intron |
| GAGAGAAAAGAGCCATTTGA+TGG | 0.382522 | 1_3:+24462179 | None:intergenic |
| GAAATTGGTTCTGTATCAAA+AGG | 0.400466 | 1_3:-24462091 | Msa0111020:three_prime_UTR |
| GCCAGCCTCATTTGCCTCTC+CGG | 0.403443 | 1_3:+24462395 | None:intergenic |
| GTGGGTTCATTTGGATCAAC+GGG | 0.405667 | 1_3:+24462662 | None:intergenic |
| AGAGAAAATGCTGCAATAAC+GGG | 0.418026 | 1_3:-24464605 | Msa0111020:CDS |
| AGCAAGAAATTGAAGATATT+AGG | 0.418785 | 1_3:-24465518 | Msa0111020:CDS |
| TACTGGCTTGAAATTCTTCA+AGG | 0.419864 | 1_3:+24466837 | None:intergenic |
| CCAAGTTAGCTATGGAGAAA+TGG | 0.433955 | 1_3:-24462624 | Msa0111020:CDS |
| GGAATGACATTAGGGTTTCT+GGG | 0.441069 | 1_3:+24466858 | None:intergenic |
| GCCGGAGAGGCAAATGAGGC+TGG | 0.442989 | 1_3:-24462396 | Msa0111020:exon |
| TCTGGAAAGGAAGGTGGTAG+AGG | 0.459679 | 1_3:-24464548 | Msa0111020:CDS |
| AAGAGAAAATGCTGCAATAA+CGG | 0.462989 | 1_3:-24464606 | Msa0111020:CDS |
| GCCAGTAGGGTTTGCAGATG+TGG | 0.471309 | 1_3:+24462700 | None:intergenic |
| AAAAGTCGCCTTGGCTGTCC+AGG | 0.479796 | 1_3:-24465394 | Msa0111020:CDS |
| ATAAAGACACGGTAAATCTT+CGG | 0.489947 | 1_3:+24462221 | None:intergenic |
| TTGGTTGCAAAAGCAGTATG+TGG | 0.499256 | 1_3:+24462643 | None:intergenic |
| AATCTAATAGCTGAGGTATC+CGG | 0.503643 | 1_3:+24465468 | None:intergenic |
| ATGAACAAAAGCATAGCATC+AGG | 0.508393 | 1_3:-24465428 | Msa0111020:CDS |
| TATGTGTAGTGTACAATTGC+TGG | 0.508504 | 1_3:-24462116 | Msa0111020:three_prime_UTR |
| AAAAGTTTGATGAGGAGCTT+CGG | 0.508683 | 1_3:-24464779 | Msa0111020:CDS |
| GCCACATCTGCAAACCCTAC+TGG | 0.508937 | 1_3:-24462701 | Msa0111020:CDS |
| TGATTACCAAATCGTATGCC+TGG | 0.512770 | 1_3:+24465376 | None:intergenic |
| AACTGCAACAGCAGCGGCAG+TGG | 0.517916 | 1_3:-24462744 | Msa0111020:CDS |
| ATTAGGCGAGGAGTTCGATC+TGG | 0.518526 | 1_3:-24465501 | Msa0111020:CDS |
| ACTACATAGGCAAACTATCA+AGG | 0.523794 | 1_3:+24462278 | None:intergenic |
| TGCCTCTCTGAACCATCAAA+TGG | 0.527509 | 1_3:-24462191 | Msa0111020:three_prime_UTR |
| CAGTTTGGACAGATGCTGCT+TGG | 0.529704 | 1_3:+24462762 | None:intergenic |
| ATCTGCAAACCCTACTGGCA+TGG | 0.540608 | 1_3:-24462696 | Msa0111020:CDS |
| AATACAAAATCTGGAAAGGA+AGG | 0.545244 | 1_3:-24464557 | Msa0111020:CDS |
| TGTGGGTTCATTTGGATCAA+CGG | 0.548467 | 1_3:+24462661 | None:intergenic |
| CCTATGTAGTTGCGATTGCT+GGG | 0.550561 | 1_3:-24462265 | Msa0111020:three_prime_UTR |
| AAATCTAAATCCATGCCAGT+AGG | 0.571887 | 1_3:+24462686 | None:intergenic |
| CCCAGCAATCGCAACTACAT+AGG | 0.574741 | 1_3:+24462265 | None:intergenic |
| GGCTTGAAAGAACAACCAAA+AGG | 0.577624 | 1_3:-24462457 | Msa0111020:CDS |
| CTGTATGACCAGATAATCAA+AGG | 0.577866 | 1_3:-24465560 | Msa0111020:intron |
| GGAAAGGAAGGTGGTAGAGG+AGG | 0.586838 | 1_3:-24464545 | Msa0111020:CDS |
| AATCGCCGGAGAGGCAAATG+AGG | 0.587113 | 1_3:-24462400 | Msa0111020:exon |
| AAATTGGTTCTGTATCAAAA+GGG | 0.587352 | 1_3:-24462090 | Msa0111020:three_prime_UTR |
| AATTTCAGTGCAAAATAGAG+TGG | 0.587441 | 1_3:-24462498 | Msa0111020:intron |
| TTACCATCAGGACTTGAAGT+AGG | 0.598525 | 1_3:+24464578 | None:intergenic |
| GCTCCTACTTCAAGTCCTGA+TGG | 0.601472 | 1_3:-24464581 | Msa0111020:CDS |
| TGGTAATACAAAATCTGGAA+AGG | 0.603643 | 1_3:-24464561 | Msa0111020:CDS |
| GACCTAGATAAAAGTTTACA+AGG | 0.605055 | 1_3:-24466624 | Msa0111020:intron |
| GAATGACATTAGGGTTTCTG+GGG | 0.615218 | 1_3:+24466859 | None:intergenic |
| TGGTTGCAAAAGCAGTATGT+GGG | 0.617588 | 1_3:+24462644 | None:intergenic |
| AATCTAAATCCATGCCAGTA+GGG | 0.619977 | 1_3:+24462687 | None:intergenic |
| ATCGTATGCCTGGACAGCCA+AGG | 0.620003 | 1_3:+24465386 | None:intergenic |
| ATCAGAGAATCTAATAGCTG+AGG | 0.624258 | 1_3:+24465461 | None:intergenic |
| GTGCCGCAACAAGAAATCGC+CGG | 0.626979 | 1_3:-24462414 | Msa0111020:CDS |
| ACATACATCAGGGTTATCAC+AGG | 0.628537 | 1_3:+24462598 | None:intergenic |
| GAAATTGAAGATATTAGGCG+AGG | 0.633046 | 1_3:-24465513 | Msa0111020:CDS |
| ACAAAATCTGGAAAGGAAGG+TGG | 0.642455 | 1_3:-24464554 | Msa0111020:CDS |
| GTGTAGTGTACAATTGCTGG+TGG | 0.645150 | 1_3:-24462113 | Msa0111020:three_prime_UTR |
| GCAACAAGAAATCGCCGGAG+AGG | 0.647160 | 1_3:-24462409 | Msa0111020:CDS |
| TCTCCGGCGATTTCTTGTTG+CGG | 0.647908 | 1_3:+24462411 | None:intergenic |
| TGTCCAAACTGCAACAGCAG+CGG | 0.650946 | 1_3:-24462750 | Msa0111020:CDS |
| TTTGATGAGGAGCTTCGGCG+TGG | 0.684897 | 1_3:-24464774 | Msa0111020:intron |
| GGCACCATACTATAAAGACA+CGG | 0.725173 | 1_3:+24462210 | None:intergenic |
| AGCCATTTGATGGTTCAGAG+AGG | 0.740229 | 1_3:+24462189 | None:intergenic |
| TCGATCTGGAAACATCACAC+CGG | 0.746925 | 1_3:-24465487 | Msa0111020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAATATTGTATAAAATTAT+AGG | - | chr1_3:24462730-24462749 | Msa0111020:CDS | 10.0% |
| !! | TTATAATAAGATTTGATTCA+TGG | - | chr1_3:24462950-24462969 | Msa0111020:intron | 15.0% |
| !! | TATATAACTCAAAAAGAAAA+GGG | + | chr1_3:24465961-24465980 | None:intergenic | 15.0% |
| !! | ATATATAACTCAAAAAGAAA+AGG | + | chr1_3:24465962-24465981 | None:intergenic | 15.0% |
| !!! | TTATTTTGTTTGATTTATCT+AGG | - | chr1_3:24466635-24466654 | Msa0111020:CDS | 15.0% |
| !! | TACTTCTTATGAAGAATATT+AGG | + | chr1_3:24462279-24462298 | None:intergenic | 20.0% |
| !!! | TATTTTCTTATACGAACTAA+AGG | + | chr1_3:24462568-24462587 | None:intergenic | 20.0% |
| !! | AAAGTCAATATTTGTAATGA+TGG | - | chr1_3:24462684-24462703 | Msa0111020:CDS | 20.0% |
| !!! | ATTTAGTCATTTAGTGATTT+TGG | - | chr1_3:24462761-24462780 | Msa0111020:CDS | 20.0% |
| !!! | TACTTTGCTATATTAAATGA+AGG | - | chr1_3:24463240-24463259 | Msa0111020:intron | 20.0% |
| !! | TTAAATACATGTAACAAGAT+AGG | + | chr1_3:24463587-24463606 | None:intergenic | 20.0% |
| !! | TATACTCATGTTAATATACT+TGG | - | chr1_3:24463904-24463923 | Msa0111020:intron | 20.0% |
| !!! | ATGTTTCATTATTTTATTGC+AGG | - | chr1_3:24464098-24464117 | Msa0111020:intron | 20.0% |
| !! | AAGTTGAATCATATTGTAAT+CGG | - | chr1_3:24464246-24464265 | Msa0111020:intron | 20.0% |
| !!! | AAAAAGTACGTAATACATTT+TGG | - | chr1_3:24464418-24464437 | Msa0111020:intron | 20.0% |
| !! | AACAAGATTAACTATACATT+AGG | - | chr1_3:24464594-24464613 | Msa0111020:CDS | 20.0% |
| !! | AATAAAAATTGAAAAGTTCC+AGG | - | chr1_3:24464620-24464639 | Msa0111020:intron | 20.0% |
| !! | AATAACATTAATCAACATGT+AGG | - | chr1_3:24464728-24464747 | Msa0111020:intron | 20.0% |
| !! | ATAACATTAATCAACATGTA+GGG | - | chr1_3:24464729-24464748 | Msa0111020:intron | 20.0% |
| !! | CTATTCTATCAATAATATTC+AGG | + | chr1_3:24465252-24465271 | None:intergenic | 20.0% |
| !! | TCATCTAATTGGAATAATTT+GGG | + | chr1_3:24465672-24465691 | None:intergenic | 20.0% |
| !! | ATATAACTCAAAAAGAAAAG+GGG | + | chr1_3:24465960-24465979 | None:intergenic | 20.0% |
| ! | AAATTGAAATCGAGAAAAGA+AGG | + | chr1_3:24462130-24462149 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTCCTGCAGATT+TGG | - | chr1_3:24462245-24462264 | Msa0111020:three_prime_UTR | 25.0% |
| !! | TACCTTGTAAACTTTTATCT+AGG | + | chr1_3:24462317-24462336 | None:intergenic | 25.0% |
| !!! | CATGTATTTTTTTACACTGT+CGG | - | chr1_3:24462393-24462412 | Msa0111020:exon | 25.0% |
| ! | AAGCATGACATATAAAACAA+TGG | + | chr1_3:24462447-24462466 | None:intergenic | 25.0% |
| !!! | CAAAAATGACATGTTTTGAT+TGG | + | chr1_3:24462641-24462660 | None:intergenic | 25.0% |
| !!! | ATCAAAACATGTCATTTTTG+TGG | - | chr1_3:24462641-24462660 | Msa0111020:CDS | 25.0% |
| !! | CAATATTTGTAATGATGGAA+CGG | - | chr1_3:24462689-24462708 | Msa0111020:CDS | 25.0% |
| ! | ATAAGATTTGATTCATGGTT+TGG | - | chr1_3:24462955-24462974 | Msa0111020:intron | 25.0% |
| ! | ATTTACGTCACATAATAAAC+TGG | - | chr1_3:24463087-24463106 | Msa0111020:intron | 25.0% |
| !! | GTGAAATGAACTTTAATTTC+AGG | - | chr1_3:24463199-24463218 | Msa0111020:intron | 25.0% |
| ! | AGCAAGAAATTGAAGATATT+AGG | - | chr1_3:24463418-24463437 | Msa0111020:intron | 25.0% |
| ! | TTGTTACATGTATTTAACCA+AGG | - | chr1_3:24463590-24463609 | Msa0111020:intron | 25.0% |
| !! | CAATGATTTTCATTACACTA+AGG | - | chr1_3:24463685-24463704 | Msa0111020:intron | 25.0% |
| ! | TACTAAATAGTACTATTGTG+TGG | - | chr1_3:24463826-24463845 | Msa0111020:intron | 25.0% |
| ! | TATGTTCATCAACCAAATTT+AGG | + | chr1_3:24463855-24463874 | None:intergenic | 25.0% |
| ! | ACAGATTAGTGACAAAAAAT+TGG | + | chr1_3:24463935-24463954 | None:intergenic | 25.0% |
| ! | TCACATTATAAATACAAGTG+AGG | - | chr1_3:24463996-24464015 | Msa0111020:intron | 25.0% |
| ! | ATATCTGAAAAAGTTTGATG+AGG | - | chr1_3:24464149-24464168 | Msa0111020:intron | 25.0% |
| !!! | TCTGTATTTCTAGATAGAAA+AGG | - | chr1_3:24464650-24464669 | Msa0111020:intron | 25.0% |
| ! | TAACATTAATCAACATGTAG+GGG | - | chr1_3:24464730-24464749 | Msa0111020:intron | 25.0% |
| ! | GTACATATTTCAGATTGTTA+TGG | + | chr1_3:24464802-24464821 | None:intergenic | 25.0% |
| !! | AACAATCTGAAATATGTACA+AGG | - | chr1_3:24464803-24464822 | Msa0111020:CDS | 25.0% |
| ! | AGAAATCAACTATAATGCTA+TGG | - | chr1_3:24464827-24464846 | Msa0111020:intron | 25.0% |
| ! | CACATAACATTATTGACATA+TGG | + | chr1_3:24465032-24465051 | None:intergenic | 25.0% |
| ! | AATAACCAAAATAATCCTCT+AGG | - | chr1_3:24465352-24465371 | Msa0111020:intron | 25.0% |
| !! | TAATTCCTAGAGGATTATTT+TGG | + | chr1_3:24465360-24465379 | None:intergenic | 25.0% |
| ! | TAAGAAACTTATGTATTCTG+TGG | + | chr1_3:24465420-24465439 | None:intergenic | 25.0% |
| ! | CTCATCTAATTGGAATAATT+TGG | + | chr1_3:24465673-24465692 | None:intergenic | 25.0% |
| ! | CAAATTATTCCAATTAGATG+AGG | - | chr1_3:24465671-24465690 | Msa0111020:intron | 25.0% |
| ! | ATTACATATCCTCATCTAAT+TGG | + | chr1_3:24465683-24465702 | None:intergenic | 25.0% |
| ! | TATAACTCAAAAAGAAAAGG+GGG | + | chr1_3:24465959-24465978 | None:intergenic | 25.0% |
| ! | TCAAAATATGTATGGAATGT+AGG | + | chr1_3:24466407-24466426 | None:intergenic | 25.0% |
| !! | AAAATAGAGTGGTTTCATTT+TGG | - | chr1_3:24466449-24466468 | Msa0111020:intron | 25.0% |
| !!! | AAATTGGTTCTGTATCAAAA+GGG | - | chr1_3:24466846-24466865 | Msa0111020:CDS | 25.0% |
| ! | TGACCTGTTTAAAAAAATCA+AGG | - | chr1_3:24466871-24466890 | Msa0111020:five_prime_UTR | 25.0% |
| !!! | GAACCTTGATTTTTTTAAAC+AGG | + | chr1_3:24466877-24466896 | None:intergenic | 25.0% |
| TTCTTCAAGGAATGACATTA+GGG | + | chr1_3:24462089-24462108 | None:intergenic | 30.0% | |
| ATTCTTCAAGGAATGACATT+AGG | + | chr1_3:24462090-24462109 | None:intergenic | 30.0% | |
| GACCTAGATAAAAGTTTACA+AGG | - | chr1_3:24462312-24462331 | Msa0111020:three_prime_UTR | 30.0% | |
| ACATGCTCTTAATTAATCAC+AGG | + | chr1_3:24462378-24462397 | None:intergenic | 30.0% | |
| !! | CGGTTTAAAACAGTTTTACA+CGG | - | chr1_3:24462413-24462432 | Msa0111020:CDS | 30.0% |
| !! | GGTTTAAAACAGTTTTACAC+GGG | - | chr1_3:24462414-24462433 | Msa0111020:CDS | 30.0% |
| CATGACATATAAAACAATGG+TGG | + | chr1_3:24462444-24462463 | None:intergenic | 30.0% | |
| ! | TGTCTGTGTAAAACTGTTTT+CGG | - | chr1_3:24462529-24462548 | Msa0111020:intron | 30.0% |
| ! | ATACGAACTAAAGGTATACA+CGG | + | chr1_3:24462559-24462578 | None:intergenic | 30.0% |
| !!! | AAATGACATGTTTTGATTGG+CGG | + | chr1_3:24462638-24462657 | None:intergenic | 30.0% |
| !!! | TGTCATTTTTGTGGCTTTTA+AGG | - | chr1_3:24462650-24462669 | Msa0111020:CDS | 30.0% |
| ATTCTATATGAAGCCGAATA+AGG | + | chr1_3:24462873-24462892 | None:intergenic | 30.0% | |
| ! | TTATACTGTCTTTTGTGCTT+AGG | - | chr1_3:24462892-24462911 | Msa0111020:intron | 30.0% |
| TTATGAGTTTGTGCATACTA+AGG | + | chr1_3:24463060-24463079 | None:intergenic | 30.0% | |
| ! | TCATTTTGCCTTTGATTATC+TGG | + | chr1_3:24463387-24463406 | None:intergenic | 30.0% |
| ATCATTGATCAGATTATCCT+TGG | + | chr1_3:24463610-24463629 | None:intergenic | 30.0% | |
| AGATACAAATAGCAGATTTG+TGG | + | chr1_3:24463640-24463659 | None:intergenic | 30.0% | |
| ATTGTGTGGTAACCTAAATT+TGG | - | chr1_3:24463840-24463859 | Msa0111020:intron | 30.0% | |
| AATAACATTCGCAAATTGAG+TGG | + | chr1_3:24464211-24464230 | None:intergenic | 30.0% | |
| GAGAAATTAGGAACTATATC+AGG | + | chr1_3:24464305-24464324 | None:intergenic | 30.0% | |
| TTCTCTTTCTGTGAGAAATT+AGG | + | chr1_3:24464317-24464336 | None:intergenic | 30.0% | |
| AAGAGAAAATGCTGCAATAA+CGG | - | chr1_3:24464330-24464349 | Msa0111020:intron | 30.0% | |
| TGGTAATACAAAATCTGGAA+AGG | - | chr1_3:24464375-24464394 | Msa0111020:intron | 30.0% | |
| AATACAAAATCTGGAAAGGA+AGG | - | chr1_3:24464379-24464398 | Msa0111020:intron | 30.0% | |
| TACTCTGTTACGTTAAGATA+TGG | - | chr1_3:24464523-24464542 | Msa0111020:intron | 30.0% | |
| AGAAATACAGAAAGAATTCC+TGG | + | chr1_3:24464641-24464660 | None:intergenic | 30.0% | |
| TTGAAATTCACTCTAAACAG+AGG | - | chr1_3:24464769-24464788 | Msa0111020:intron | 30.0% | |
| TCAACTATAATGCTATGGTA+TGG | - | chr1_3:24464832-24464851 | Msa0111020:intron | 30.0% | |
| AATGGGGAATAATTTAAGGA+TGG | + | chr1_3:24464980-24464999 | None:intergenic | 30.0% | |
| AAGGAATGGGGAATAATTTA+AGG | + | chr1_3:24464984-24465003 | None:intergenic | 30.0% | |
| GAAGAAAGAATTAAGGAATG+GGG | + | chr1_3:24464996-24465015 | None:intergenic | 30.0% | |
| GGAAGAAAGAATTAAGGAAT+GGG | + | chr1_3:24464997-24465016 | None:intergenic | 30.0% | |
| TGGAAGAAAGAATTAAGGAA+TGG | + | chr1_3:24464998-24465017 | None:intergenic | 30.0% | |
| TTCATGTTATGCTTGATCTT+TGG | - | chr1_3:24465196-24465215 | Msa0111020:intron | 30.0% | |
| TTTGGTATTTAAGTGACCAA+TGG | - | chr1_3:24465214-24465233 | Msa0111020:intron | 30.0% | |
| GAAATTACAATTGCTGCAAT+AGG | - | chr1_3:24465315-24465334 | Msa0111020:intron | 30.0% | |
| !! | GTTTTATGTTGGATTAGGTT+GGG | + | chr1_3:24465398-24465417 | None:intergenic | 30.0% |
| !!! | TGTATTCTGTGGTTTTATGT+TGG | + | chr1_3:24465409-24465428 | None:intergenic | 30.0% |
| TAGGATATCTGATGAAGATT+CGG | + | chr1_3:24465761-24465780 | None:intergenic | 30.0% | |
| !!! | CTTGCTTTTTTTCTTTCTCT+GGG | - | chr1_3:24465867-24465886 | Msa0111020:intron | 30.0% |
| !!! | TTGCTTTTTTTCTTTCTCTG+GGG | - | chr1_3:24465868-24465887 | Msa0111020:intron | 30.0% |
| GACCATTATTTGTATCCTTT+GGG | - | chr1_3:24465924-24465943 | Msa0111020:intron | 30.0% | |
| ACCATTATTTGTATCCTTTG+GGG | - | chr1_3:24465925-24465944 | Msa0111020:intron | 30.0% | |
| !!! | ATCCTATAGCTTTTAAAGTG+AGG | - | chr1_3:24466016-24466035 | Msa0111020:intron | 30.0% |
| ! | AACCTCACTTTAAAAGCTAT+AGG | + | chr1_3:24466021-24466040 | None:intergenic | 30.0% |
| GAAAGTAGAAACATACATCA+GGG | + | chr1_3:24466351-24466370 | None:intergenic | 30.0% | |
| TGAAAGTAGAAACATACATC+AGG | + | chr1_3:24466352-24466371 | None:intergenic | 30.0% | |
| TGTATGGAATGTAGGTAAAA+TGG | + | chr1_3:24466399-24466418 | None:intergenic | 30.0% | |
| AGATAGCGTCAAAATATGTA+TGG | + | chr1_3:24466415-24466434 | None:intergenic | 30.0% | |
| AATTTCAGTGCAAAATAGAG+TGG | - | chr1_3:24466438-24466457 | Msa0111020:intron | 30.0% | |
| AAGAACAACCAAAAGGAAAA+TGG | - | chr1_3:24466486-24466505 | Msa0111020:intron | 30.0% | |
| ATAAAGACACGGTAAATCTT+CGG | + | chr1_3:24466718-24466737 | None:intergenic | 30.0% | |
| TTTACCGTGTCTTTATAGTA+TGG | - | chr1_3:24466722-24466741 | Msa0111020:intron | 30.0% | |
| !! | GAAATTGGTTCTGTATCAAA+AGG | - | chr1_3:24466845-24466864 | Msa0111020:CDS | 30.0% |
| !! | TACTGGCTTGAAATTCTTCA+AGG | + | chr1_3:24462102-24462121 | None:intergenic | 35.0% |
| TTGAAATCGAGAAAAGAAGG+TGG | + | chr1_3:24462127-24462146 | None:intergenic | 35.0% | |
| TCAAAATAACCATACCAGAG+TGG | - | chr1_3:24462473-24462492 | Msa0111020:CDS | 35.0% | |
| CAAAATAACCATACCAGAGT+GGG | - | chr1_3:24462474-24462493 | Msa0111020:CDS | 35.0% | |
| AAAATAACCATACCAGAGTG+GGG | - | chr1_3:24462475-24462494 | Msa0111020:CDS | 35.0% | |
| !!! | GCAAAGTAGTGGATTTTCAT+TGG | - | chr1_3:24462505-24462524 | Msa0111020:intron | 35.0% |
| !! | TTGTAATGATGGAACGGTTT+TGG | - | chr1_3:24462695-24462714 | Msa0111020:CDS | 35.0% |
| !!! | GATTTTGGTGTCATTCTTTG+CGG | - | chr1_3:24462776-24462795 | Msa0111020:intron | 35.0% |
| TGAAGAGTGGTAACCTTATT+CGG | - | chr1_3:24462857-24462876 | Msa0111020:intron | 35.0% | |
| GGACTAACATGGTTATCAAA+TGG | + | chr1_3:24463012-24463031 | None:intergenic | 35.0% | |
| TCTACATCAAAGGACTAACA+TGG | + | chr1_3:24463023-24463042 | None:intergenic | 35.0% | |
| GTATTGTGCTTCTACATCAA+AGG | + | chr1_3:24463033-24463052 | None:intergenic | 35.0% | |
| ACTCAAGATGCGATAAACTA+GGG | + | chr1_3:24463321-24463340 | None:intergenic | 35.0% | |
| CTGTATGACCAGATAATCAA+AGG | - | chr1_3:24463376-24463395 | Msa0111020:intron | 35.0% | |
| GAAATTGAAGATATTAGGCG+AGG | - | chr1_3:24463423-24463442 | Msa0111020:intron | 35.0% | |
| ! | AATCTAATAGCTGAGGTATC+CGG | + | chr1_3:24463471-24463490 | None:intergenic | 35.0% |
| ATCAGAGAATCTAATAGCTG+AGG | + | chr1_3:24463478-24463497 | None:intergenic | 35.0% | |
| ! | ATGAACAAAAGCATAGCATC+AGG | - | chr1_3:24463508-24463527 | Msa0111020:intron | 35.0% |
| CCACAAACATGGATCATTTA+CGG | - | chr1_3:24463732-24463751 | Msa0111020:intron | 35.0% | |
| TCTATCATGTACAGCAAATG+CGG | + | chr1_3:24463784-24463803 | None:intergenic | 35.0% | |
| TACAAAGTACGAACAGTTGT+TGG | - | chr1_3:24464053-24464072 | Msa0111020:intron | 35.0% | |
| AAAAGTTTGATGAGGAGCTT+CGG | - | chr1_3:24464157-24464176 | Msa0111020:intron | 35.0% | |
| AGAGAAAATGCTGCAATAAC+GGG | - | chr1_3:24464331-24464350 | Msa0111020:intron | 35.0% | |
| ! | CCAGATTTTGTATTACCATC+AGG | + | chr1_3:24464373-24464392 | None:intergenic | 35.0% |
| CCTGATGGTAATACAAAATC+TGG | - | chr1_3:24464370-24464389 | Msa0111020:intron | 35.0% | |
| CACATAAACGACAACATGAT+AGG | + | chr1_3:24464470-24464489 | None:intergenic | 35.0% | |
| TACATATGTTGGAAAGGACA+AGG | + | chr1_3:24464505-24464524 | None:intergenic | 35.0% | |
| ACAGAGTACATATGTTGGAA+AGG | + | chr1_3:24464511-24464530 | None:intergenic | 35.0% | |
| ACGTAACAGAGTACATATGT+TGG | + | chr1_3:24464516-24464535 | None:intergenic | 35.0% | |
| !!! | AATCTTGTTTTCCACATCCT+CGG | + | chr1_3:24464583-24464602 | None:intergenic | 35.0% |
| ! | CACTTCTGTCGTAACATTTT+CGG | + | chr1_3:24464708-24464727 | None:intergenic | 35.0% |
| TATTTCATTGTCATCCTGCA+AGG | + | chr1_3:24464867-24464886 | None:intergenic | 35.0% | |
| GAGAGTGGAAGAAAGAATTA+AGG | + | chr1_3:24465003-24465022 | None:intergenic | 35.0% | |
| GAGACAAGAACAGAACAAAT+GGG | + | chr1_3:24465107-24465126 | None:intergenic | 35.0% | |
| AAAGGAAAAAGAAGCAGAGA+TGG | + | chr1_3:24465129-24465148 | None:intergenic | 35.0% | |
| ! | TTTTTCCTTTCCTCCTAAGT+TGG | - | chr1_3:24465139-24465158 | Msa0111020:intron | 35.0% |
| !! | AAGAAGCATTAACTGATGAC+AGG | + | chr1_3:24465178-24465197 | None:intergenic | 35.0% |
| CAGGTTATCATTCTATCCAT+TGG | + | chr1_3:24465233-24465252 | None:intergenic | 35.0% | |
| !! | GGTTTTATGTTGGATTAGGT+TGG | + | chr1_3:24465399-24465418 | None:intergenic | 35.0% |
| !!! | CTGTGGTTTTATGTTGGATT+AGG | + | chr1_3:24465403-24465422 | None:intergenic | 35.0% |
| TAAGTTTCTTACCCTTGTTC+TGG | - | chr1_3:24465429-24465448 | Msa0111020:CDS | 35.0% | |
| AGCGTACAAACAGATTACTA+TGG | - | chr1_3:24465515-24465534 | Msa0111020:CDS | 35.0% | |
| GTCAAATGTCGAACAAATGT+TGG | + | chr1_3:24465615-24465634 | None:intergenic | 35.0% | |
| AATACCAGAATGAGTACTTG+AGG | + | chr1_3:24465719-24465738 | None:intergenic | 35.0% | |
| ACAGCAAGCAAGATTACTAT+AGG | + | chr1_3:24465780-24465799 | None:intergenic | 35.0% | |
| TGTTTGTTTATTGCCTCCTT+CGG | - | chr1_3:24465797-24465816 | Msa0111020:intron | 35.0% | |
| GGAAAAAAAAAACCAGACTC+AGG | + | chr1_3:24465848-24465867 | None:intergenic | 35.0% | |
| CCAGAGAAAGAAAAAAAGCA+AGG | + | chr1_3:24465869-24465888 | None:intergenic | 35.0% | |
| !!! | CCTTGCTTTTTTTCTTTCTC+TGG | - | chr1_3:24465866-24465885 | Msa0111020:intron | 35.0% |
| AGGATACAAATAATGGTCCA+AGG | + | chr1_3:24465922-24465941 | None:intergenic | 35.0% | |
| GGACCATTATTTGTATCCTT+TGG | - | chr1_3:24465923-24465942 | Msa0111020:intron | 35.0% | |
| CCATTATTTGTATCCTTTGG+GGG | - | chr1_3:24465926-24465945 | Msa0111020:intron | 35.0% | |
| CATTATTTGTATCCTTTGGG+GGG | - | chr1_3:24465927-24465946 | Msa0111020:intron | 35.0% | |
| AATCTAAATCCATGCCAGTA+GGG | + | chr1_3:24466252-24466271 | None:intergenic | 35.0% | |
| AAATCTAAATCCATGCCAGT+AGG | + | chr1_3:24466253-24466272 | None:intergenic | 35.0% | |
| ! | TTTTGCAACCAAGTTAGCTA+TGG | - | chr1_3:24466304-24466323 | Msa0111020:intron | 35.0% |
| ! | GAACAGTACCATTTTCCTTT+TGG | + | chr1_3:24466497-24466516 | None:intergenic | 35.0% |
| ACTACATAGGCAAACTATCA+AGG | + | chr1_3:24466661-24466680 | None:intergenic | 35.0% | |
| TATGTGTAGTGTACAATTGC+TGG | - | chr1_3:24466820-24466839 | Msa0111020:intron | 35.0% | |
| GAATGACATTAGGGTTTCTG+GGG | + | chr1_3:24462080-24462099 | None:intergenic | 40.0% | |
| GGAATGACATTAGGGTTTCT+GGG | + | chr1_3:24462081-24462100 | None:intergenic | 40.0% | |
| AGGAATGACATTAGGGTTTC+TGG | + | chr1_3:24462082-24462101 | None:intergenic | 40.0% | |
| !! | GAGAAAAGAAGGTGGATTAC+TGG | + | chr1_3:24462119-24462138 | None:intergenic | 40.0% |
| !! | TAATGATGGAACGGTTTTGG+CGG | - | chr1_3:24462698-24462717 | Msa0111020:CDS | 40.0% |
| ATGTAGTGTGTGTGAATCAG+TGG | - | chr1_3:24462834-24462853 | Msa0111020:intron | 40.0% | |
| CTCAAGATGCGATAAACTAG+GGG | + | chr1_3:24463320-24463339 | None:intergenic | 40.0% | |
| GACTCAAGATGCGATAAACT+AGG | + | chr1_3:24463322-24463341 | None:intergenic | 40.0% | |
| TGATTACCAAATCGTATGCC+TGG | + | chr1_3:24463563-24463582 | None:intergenic | 40.0% | |
| CCGTAAATGATCCATGTTTG+TGG | + | chr1_3:24463735-24463754 | None:intergenic | 40.0% | |
| TTGCTGTACATGATAGAAGC+TGG | - | chr1_3:24463787-24463806 | Msa0111020:intron | 40.0% | |
| !! | AACAGTTGTTGGCTTGTTTC+TGG | - | chr1_3:24464064-24464083 | Msa0111020:intron | 40.0% |
| TTACCATCAGGACTTGAAGT+AGG | + | chr1_3:24464361-24464380 | None:intergenic | 40.0% | |
| ACAAAATCTGGAAAGGAAGG+TGG | - | chr1_3:24464382-24464401 | Msa0111020:intron | 40.0% | |
| AAGTAGACACTAGTTATCCG+AGG | - | chr1_3:24464563-24464582 | Msa0111020:CDS | 40.0% | |
| GGCATTTCAATATGCCAGAT+TGG | - | chr1_3:24464671-24464690 | Msa0111020:intron | 40.0% | |
| TATGGAGACAAATTCCTTGC+AGG | - | chr1_3:24464850-24464869 | Msa0111020:intron | 40.0% | |
| AAATTCAGGGGCTTAATGGA+AGG | + | chr1_3:24464932-24464951 | None:intergenic | 40.0% | |
| AGGAAAATTCAGGGGCTTAA+TGG | + | chr1_3:24464936-24464955 | None:intergenic | 40.0% | |
| ATTCTTTCTTCCACTCTCCT+TGG | - | chr1_3:24465005-24465024 | Msa0111020:intron | 40.0% | |
| TTCTTTCTTCCACTCTCCTT+GGG | - | chr1_3:24465006-24465025 | Msa0111020:intron | 40.0% | |
| CATTATTGACATATGGCCCA+AGG | + | chr1_3:24465025-24465044 | None:intergenic | 40.0% | |
| AGTAAGGAAAACAGGACAGA+GGG | + | chr1_3:24465059-24465078 | None:intergenic | 40.0% | |
| ! | TCTGTCCTGTTTTCCTTACT+CGG | - | chr1_3:24465059-24465078 | Msa0111020:intron | 40.0% |
| GGAGACAAGAACAGAACAAA+TGG | + | chr1_3:24465108-24465127 | None:intergenic | 40.0% | |
| ATTAATAGGGCCAACTTAGG+AGG | + | chr1_3:24465152-24465171 | None:intergenic | 40.0% | |
| ! | TCCTAAGTTGGCCCTATTAA+TGG | - | chr1_3:24465151-24465170 | Msa0111020:intron | 40.0% |
| ! | CCTAAGTTGGCCCTATTAAT+GGG | - | chr1_3:24465152-24465171 | Msa0111020:intron | 40.0% |
| TGATGACAGGCCCATTAATA+GGG | + | chr1_3:24465165-24465184 | None:intergenic | 40.0% | |
| TGTTCTGTAACTTCTGCTAG+TGG | + | chr1_3:24465291-24465310 | None:intergenic | 40.0% | |
| TAGCAGAAGTTACAGAACAG+AGG | - | chr1_3:24465292-24465311 | Msa0111020:intron | 40.0% | |
| AGCAGAAGTTACAGAACAGA+GGG | - | chr1_3:24465293-24465312 | Msa0111020:intron | 40.0% | |
| !!! | GGGTGTTTTAACCAGAACAA+GGG | + | chr1_3:24465443-24465462 | None:intergenic | 40.0% |
| !!! | TGGGTGTTTTAACCAGAACA+AGG | + | chr1_3:24465444-24465463 | None:intergenic | 40.0% |
| AACACCCAGTTAACTCAAAC+TGG | - | chr1_3:24465456-24465475 | Msa0111020:CDS | 40.0% | |
| ACACCCAGTTAACTCAAACT+GGG | - | chr1_3:24465457-24465476 | Msa0111020:CDS | 40.0% | |
| GTTTGTACGCTTCCAATGTT+AGG | + | chr1_3:24465506-24465525 | None:intergenic | 40.0% | |
| CTGTGATGGCATTGTCAATT+CGG | + | chr1_3:24465587-24465606 | None:intergenic | 40.0% | |
| AAATGTTGGTCGTACTGTGA+TGG | + | chr1_3:24465601-24465620 | None:intergenic | 40.0% | |
| CATTCCTCAAGTACTCATTC+TGG | - | chr1_3:24465712-24465731 | Msa0111020:intron | 40.0% | |
| !! | TTCTCTGGGGTGTGTTTAAT+TGG | - | chr1_3:24465881-24465900 | Msa0111020:intron | 40.0% |
| CCCCCAAAGGATACAAATAA+TGG | + | chr1_3:24465929-24465948 | None:intergenic | 40.0% | |
| AGAGATGAAGCATAGTGAGA+AGG | + | chr1_3:24466063-24466082 | None:intergenic | 40.0% | |
| TGTGGGTTCATTTGGATCAA+CGG | + | chr1_3:24466278-24466297 | None:intergenic | 40.0% | |
| AAGCAGTATGTGGGTTCATT+TGG | + | chr1_3:24466286-24466305 | None:intergenic | 40.0% | |
| TGGTTGCAAAAGCAGTATGT+GGG | + | chr1_3:24466295-24466314 | None:intergenic | 40.0% | |
| TTGGTTGCAAAAGCAGTATG+TGG | + | chr1_3:24466296-24466315 | None:intergenic | 40.0% | |
| CCATTTCTCCATAGCTAACT+TGG | + | chr1_3:24466315-24466334 | None:intergenic | 40.0% | |
| CCAAGTTAGCTATGGAGAAA+TGG | - | chr1_3:24466312-24466331 | Msa0111020:intron | 40.0% | |
| ACATACATCAGGGTTATCAC+AGG | + | chr1_3:24466341-24466360 | None:intergenic | 40.0% | |
| !!! | TGGTTTCATTTTGGCTGTGT+TGG | - | chr1_3:24466458-24466477 | Msa0111020:intron | 40.0% |
| GGCTTGAAAGAACAACCAAA+AGG | - | chr1_3:24466479-24466498 | Msa0111020:intron | 40.0% | |
| GGCACCATACTATAAAGACA+CGG | + | chr1_3:24466729-24466748 | None:intergenic | 40.0% | |
| GAGAGAAAAGAGCCATTTGA+TGG | + | chr1_3:24466760-24466779 | None:intergenic | 40.0% | |
| GTACAATTGCTGGTGGAAAT+TGG | - | chr1_3:24466830-24466849 | Msa0111020:intron | 40.0% | |
| GGAAGTGAATCCAAATCTGC+AGG | + | chr1_3:24462258-24462277 | None:intergenic | 45.0% | |
| !!! | CATGTTTTGATTGGCGGACA+CGG | + | chr1_3:24462632-24462651 | None:intergenic | 45.0% |
| !! | TTTGGTGTCATTCTTTGCGG+TGG | - | chr1_3:24462779-24462798 | Msa0111020:intron | 45.0% |
| TGTGAATCAGTGGTGAAGAG+TGG | - | chr1_3:24462844-24462863 | Msa0111020:intron | 45.0% | |
| TGAGAAACCACACGAAGCTT+TGG | + | chr1_3:24462926-24462945 | None:intergenic | 45.0% | |
| ATGCGATAAACTAGGGGAAG+GGG | + | chr1_3:24463314-24463333 | None:intergenic | 45.0% | |
| GATGCGATAAACTAGGGGAA+GGG | + | chr1_3:24463315-24463334 | None:intergenic | 45.0% | |
| AGATGCGATAAACTAGGGGA+AGG | + | chr1_3:24463316-24463335 | None:intergenic | 45.0% | |
| TCGATCTGGAAACATCACAC+CGG | - | chr1_3:24463449-24463468 | Msa0111020:intron | 45.0% | |
| TGCTGATGAAAAAGTCGCCT+TGG | - | chr1_3:24463533-24463552 | Msa0111020:intron | 45.0% | |
| ACGAACTAGCACCACAAACA+TGG | - | chr1_3:24463721-24463740 | Msa0111020:intron | 45.0% | |
| ATCATGTACAGCAAATGCGG+TGG | + | chr1_3:24463781-24463800 | None:intergenic | 45.0% | |
| !! | GGCTTTGTTCAGACAGATGA+GGG | + | chr1_3:24464284-24464303 | None:intergenic | 45.0% |
| !! | AGGCTTTGTTCAGACAGATG+AGG | + | chr1_3:24464285-24464304 | None:intergenic | 45.0% |
| ACACTAGTTATCCGAGGATG+TGG | - | chr1_3:24464569-24464588 | Msa0111020:CDS | 45.0% | |
| ! | AGGGGTGTGAGGAAAATTCA+GGG | + | chr1_3:24464945-24464964 | None:intergenic | 45.0% |
| GAGTAAGGAAAACAGGACAG+AGG | + | chr1_3:24465060-24465079 | None:intergenic | 45.0% | |
| CCCATTAATAGGGCCAACTT+AGG | + | chr1_3:24465155-24465174 | None:intergenic | 45.0% | |
| CTGATGACAGGCCCATTAAT+AGG | + | chr1_3:24465166-24465185 | None:intergenic | 45.0% | |
| CTAGGCTCTCTAATTCCTAG+AGG | + | chr1_3:24465370-24465389 | None:intergenic | 45.0% | |
| TCAGGCGCAATTGATTGACA+GGG | + | chr1_3:24465483-24465502 | None:intergenic | 45.0% | |
| AATTGCGCCTGACCTAACAT+TGG | - | chr1_3:24465491-24465510 | Msa0111020:CDS | 45.0% | |
| TACGCTTCCAATGTTAGGTC+AGG | + | chr1_3:24465501-24465520 | None:intergenic | 45.0% | |
| GTGGGTTCATTTGGATCAAC+GGG | + | chr1_3:24466277-24466296 | None:intergenic | 45.0% | |
| CCTATGTAGTTGCGATTGCT+GGG | - | chr1_3:24466671-24466690 | Msa0111020:CDS | 45.0% | |
| TGCCTCTCTGAACCATCAAA+TGG | - | chr1_3:24466745-24466764 | Msa0111020:intron | 45.0% | |
| ! | AGCCATTTGATGGTTCAGAG+AGG | + | chr1_3:24466750-24466769 | None:intergenic | 45.0% |
| GTGTAGTGTACAATTGCTGG+TGG | - | chr1_3:24466823-24466842 | Msa0111020:intron | 45.0% | |
| !!! | AAAAAAAAAATCAAAATTTT+TGG | + | chr1_3:24462168-24462187 | None:intergenic | 5.0% |
| !!! | AAAATTTTGATTTTTTTTTT+AGG | - | chr1_3:24462168-24462187 | Msa0111020:three_prime_UTR | 5.0% |
| !!! | AAATTTTGATTTTTTTTTTA+GGG | - | chr1_3:24462169-24462188 | Msa0111020:three_prime_UTR | 5.0% |
| CATATCACCCCACTCTGGTA+TGG | + | chr1_3:24462485-24462504 | None:intergenic | 50.0% | |
| CATACCAGAGTGGGGTGATA+TGG | - | chr1_3:24462483-24462502 | Msa0111020:CDS | 50.0% | |
| TTTGCCATATCACCCCACTC+TGG | + | chr1_3:24462490-24462509 | None:intergenic | 50.0% | |
| GGGGTGATATGGCAAAGTAG+TGG | - | chr1_3:24462494-24462513 | Msa0111020:intron | 50.0% | |
| GTTTCTGCCAAAGCTTCGTG+TGG | - | chr1_3:24462916-24462935 | Msa0111020:intron | 50.0% | |
| TGCGATAAACTAGGGGAAGG+GGG | + | chr1_3:24463313-24463332 | None:intergenic | 50.0% | |
| ATTAGGCGAGGAGTTCGATC+TGG | - | chr1_3:24463435-24463454 | Msa0111020:intron | 50.0% | |
| GCTCCTACTTCAAGTCCTGA+TGG | - | chr1_3:24464355-24464374 | Msa0111020:intron | 50.0% | |
| TCTGGAAAGGAAGGTGGTAG+AGG | - | chr1_3:24464388-24464407 | Msa0111020:intron | 50.0% | |
| CGGAGTTACATGCACCAATC+TGG | + | chr1_3:24464688-24464707 | None:intergenic | 50.0% | |
| CAGGGGCTTAATGGAAGGTT+GGG | + | chr1_3:24464927-24464946 | None:intergenic | 50.0% | |
| TCAGGGGCTTAATGGAAGGT+TGG | + | chr1_3:24464928-24464947 | None:intergenic | 50.0% | |
| GGGGTGTGAGGAAAATTCAG+GGG | + | chr1_3:24464944-24464963 | None:intergenic | 50.0% | |
| ! | GAGGGGTGTGAGGAAAATTC+AGG | + | chr1_3:24464946-24464965 | None:intergenic | 50.0% |
| ! | AATTTTCCTCACACCCCTCG+TGG | - | chr1_3:24464947-24464966 | Msa0111020:intron | 50.0% |
| TAGGGCCAACTTAGGAGGAA+AGG | + | chr1_3:24465147-24465166 | None:intergenic | 50.0% | |
| CTTCTGCTAGTGGTTACTGC+AGG | + | chr1_3:24465281-24465300 | None:intergenic | 50.0% | |
| !! | GGATTAGGTTGGGAGAGACT+AGG | + | chr1_3:24465388-24465407 | None:intergenic | 50.0% |
| ! | GGGCCCAGTTTGAGTTAACT+GGG | + | chr1_3:24465463-24465482 | None:intergenic | 50.0% |
| ! | AGGGCCCAGTTTGAGTTAAC+TGG | + | chr1_3:24465464-24465483 | None:intergenic | 50.0% |
| GTCAGGCGCAATTGATTGAC+AGG | + | chr1_3:24465484-24465503 | None:intergenic | 50.0% | |
| ! | GGGGTGTGTTTAATTGGCCT+CGG | - | chr1_3:24465887-24465906 | Msa0111020:intron | 50.0% |
| CAGTTTGGACAGATGCTGCT+TGG | + | chr1_3:24466177-24466196 | None:intergenic | 50.0% | |
| TGTCCAAACTGCAACAGCAG+CGG | - | chr1_3:24466186-24466205 | Msa0111020:intron | 50.0% | |
| ATCTGCAAACCCTACTGGCA+TGG | - | chr1_3:24466240-24466259 | Msa0111020:intron | 50.0% | |
| TCTCCGGCGATTTCTTGTTG+CGG | + | chr1_3:24466528-24466547 | None:intergenic | 50.0% | |
| GCCTATGTAGTTGCGATTGC+TGG | - | chr1_3:24466670-24466689 | Msa0111020:CDS | 50.0% | |
| CCCAGCAATCGCAACTACAT+AGG | + | chr1_3:24466674-24466693 | None:intergenic | 50.0% | |
| AAAAGTCGCCTTGGCTGTCC+AGG | - | chr1_3:24463542-24463561 | Msa0111020:intron | 55.0% | |
| ATCGTATGCCTGGACAGCCA+AGG | + | chr1_3:24463553-24463572 | None:intergenic | 55.0% | |
| GGCTGTCCAGGCATACGATT+TGG | - | chr1_3:24463554-24463573 | Msa0111020:intron | 55.0% | |
| TTTGATGAGGAGCTTCGGCG+TGG | - | chr1_3:24464162-24464181 | Msa0111020:intron | 55.0% | |
| GGAAAGGAAGGTGGTAGAGG+AGG | - | chr1_3:24464391-24464410 | Msa0111020:intron | 55.0% | |
| GACATATGGCCCAAGGAGAG+TGG | + | chr1_3:24465018-24465037 | None:intergenic | 55.0% | |
| GGCTGCCGAGTAAGGAAAAC+AGG | + | chr1_3:24465067-24465086 | None:intergenic | 55.0% | |
| GCAGCCCTTGTGTGAGTCTT+GGG | - | chr1_3:24465081-24465100 | Msa0111020:intron | 55.0% | |
| TGGGCCCAAGACTCACACAA+GGG | + | chr1_3:24465088-24465107 | None:intergenic | 55.0% | |
| ATGGGCCCAAGACTCACACA+AGG | + | chr1_3:24465089-24465108 | None:intergenic | 55.0% | |
| TTGCCTCCTTCGGCATGTCT+CGG | - | chr1_3:24465807-24465826 | Msa0111020:intron | 55.0% | |
| AGGGGGATAAAACCCCCCAA+AGG | + | chr1_3:24465942-24465961 | None:intergenic | 55.0% | |
| GCCACATCTGCAAACCCTAC+TGG | - | chr1_3:24466235-24466254 | Msa0111020:intron | 55.0% | |
| GCCAGTAGGGTTTGCAGATG+TGG | + | chr1_3:24466239-24466258 | None:intergenic | 55.0% | |
| GTGCCGCAACAAGAAATCGC+CGG | - | chr1_3:24466522-24466541 | Msa0111020:intron | 55.0% | |
| GCAACAAGAAATCGCCGGAG+AGG | - | chr1_3:24466527-24466546 | Msa0111020:intron | 55.0% | |
| AATCGCCGGAGAGGCAAATG+AGG | - | chr1_3:24466536-24466555 | Msa0111020:intron | 55.0% | |
| AGGATGGAGCGTAGCCACGA+GGG | + | chr1_3:24464964-24464983 | None:intergenic | 60.0% | |
| AAGGATGGAGCGTAGCCACG+AGG | + | chr1_3:24464965-24464984 | None:intergenic | 60.0% | |
| CACACAAGGGCTGCCGAGTA+AGG | + | chr1_3:24465075-24465094 | None:intergenic | 60.0% | |
| GGCAGCCCTTGTGTGAGTCT+TGG | - | chr1_3:24465080-24465099 | Msa0111020:intron | 60.0% | |
| TGCCTCCTTCGGCATGTCTC+GGG | - | chr1_3:24465808-24465827 | Msa0111020:intron | 60.0% | |
| ACCAGACTCAGGACCCCAAC+CGG | + | chr1_3:24465837-24465856 | None:intergenic | 60.0% | |
| GTCCAAGGCACACACAACCG+AGG | + | chr1_3:24465907-24465926 | None:intergenic | 60.0% | |
| CTGCCGCTGCTGTTGCAGTT+TGG | + | chr1_3:24466192-24466211 | None:intergenic | 60.0% | |
| AACTGCAACAGCAGCGGCAG+TGG | - | chr1_3:24466192-24466211 | Msa0111020:intron | 60.0% | |
| GCCAGCCTCATTTGCCTCTC+CGG | + | chr1_3:24466544-24466563 | None:intergenic | 60.0% | |
| GGATGGAGCGTAGCCACGAG+GGG | + | chr1_3:24464963-24464982 | None:intergenic | 65.0% | |
| GCCTCCTTCGGCATGTCTCG+GGG | - | chr1_3:24465809-24465828 | Msa0111020:intron | 65.0% | |
| CCTCCTTCGGCATGTCTCGG+GGG | - | chr1_3:24465810-24465829 | Msa0111020:intron | 65.0% | |
| TTCGGCATGTCTCGGGGGTC+CGG | - | chr1_3:24465815-24465834 | Msa0111020:intron | 65.0% | |
| CATGTCTCGGGGGTCCGGTT+GGG | - | chr1_3:24465820-24465839 | Msa0111020:intron | 65.0% | |
| ATGTCTCGGGGGTCCGGTTG+GGG | - | chr1_3:24465821-24465840 | Msa0111020:intron | 65.0% | |
| TCCGGTTGGGGTCCTGAGTC+TGG | - | chr1_3:24465833-24465852 | Msa0111020:intron | 65.0% | |
| GGCCTCGGTTGTGTGTGCCT+TGG | - | chr1_3:24465902-24465921 | Msa0111020:intron | 65.0% | |
| GCCGGAGAGGCAAATGAGGC+TGG | - | chr1_3:24466540-24466559 | Msa0111020:intron | 65.0% | |
| ! | GCGTAGCCACGAGGGGTGTG+AGG | + | chr1_3:24464956-24464975 | None:intergenic | 70.0% |
| CCCCCGAGACATGCCGAAGG+AGG | + | chr1_3:24465813-24465832 | None:intergenic | 70.0% | |
| GGACCCCCGAGACATGCCGA+AGG | + | chr1_3:24465816-24465835 | None:intergenic | 70.0% | |
| GCATGTCTCGGGGGTCCGGT+TGG | - | chr1_3:24465819-24465838 | Msa0111020:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 24462055 | 24466903 | 24462055 | ID=Msa0111020;Name=Msa0111020 |
| chr1_3 | mRNA | 24462055 | 24466903 | 24462055 | ID=Msa0111020-mRNA-1;Parent=Msa0111020;Name=Msa0111020-mRNA-1;_AED=0.08;_eAED=0.08;_QI=36|1|1|1|1|1|7|347|247 |
| chr1_3 | exon | 24462055 | 24462512 | 24462055 | ID=Msa0111020-mRNA-1:exon:8461;Parent=Msa0111020-mRNA-1 |
| chr1_3 | exon | 24462604 | 24462790 | 24462604 | ID=Msa0111020-mRNA-1:exon:8460;Parent=Msa0111020-mRNA-1 |
| chr1_3 | exon | 24464536 | 24464629 | 24464536 | ID=Msa0111020-mRNA-1:exon:8459;Parent=Msa0111020-mRNA-1 |
| chr1_3 | exon | 24464775 | 24464838 | 24464775 | ID=Msa0111020-mRNA-1:exon:8458;Parent=Msa0111020-mRNA-1 |
| chr1_3 | exon | 24465383 | 24465570 | 24465383 | ID=Msa0111020-mRNA-1:exon:8457;Parent=Msa0111020-mRNA-1 |
| chr1_3 | exon | 24466625 | 24466696 | 24466625 | ID=Msa0111020-mRNA-1:exon:8456;Parent=Msa0111020-mRNA-1 |
| chr1_3 | exon | 24466840 | 24466903 | 24466840 | ID=Msa0111020-mRNA-1:exon:8455;Parent=Msa0111020-mRNA-1 |
| chr1_3 | five_prime_UTR | 24466868 | 24466903 | 24466868 | ID=Msa0111020-mRNA-1:five_prime_utr;Parent=Msa0111020-mRNA-1 |
| chr1_3 | CDS | 24466840 | 24466867 | 24466840 | ID=Msa0111020-mRNA-1:cds;Parent=Msa0111020-mRNA-1 |
| chr1_3 | CDS | 24466625 | 24466696 | 24466625 | ID=Msa0111020-mRNA-1:cds;Parent=Msa0111020-mRNA-1 |
| chr1_3 | CDS | 24465383 | 24465570 | 24465383 | ID=Msa0111020-mRNA-1:cds;Parent=Msa0111020-mRNA-1 |
| chr1_3 | CDS | 24464775 | 24464838 | 24464775 | ID=Msa0111020-mRNA-1:cds;Parent=Msa0111020-mRNA-1 |
| chr1_3 | CDS | 24464536 | 24464629 | 24464536 | ID=Msa0111020-mRNA-1:cds;Parent=Msa0111020-mRNA-1 |
| chr1_3 | CDS | 24462604 | 24462790 | 24462604 | ID=Msa0111020-mRNA-1:cds;Parent=Msa0111020-mRNA-1 |
| chr1_3 | CDS | 24462402 | 24462512 | 24462402 | ID=Msa0111020-mRNA-1:cds;Parent=Msa0111020-mRNA-1 |
| chr1_3 | three_prime_UTR | 24462055 | 24462401 | 24462055 | ID=Msa0111020-mRNA-1:three_prime_utr;Parent=Msa0111020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
