Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0879060 | XP_013451595.1 | 92.760 | 442 | 8 | 2 | 1 | 418 | 1 | 442 | 0.0 | 824 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0879060 | sp|Q8RWF4|NIPA8_ARATH | 69.037 | 436 | 106 | 5 | 1 | 409 | 1 | 434 | 0.0 | 602 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0879060 | A0A072U945 | 92.760 | 442 | 8 | 2 | 1 | 418 | 1 | 442 | 0.0 | 824 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0012710 | Msa0879060 | 0.802309 | 5.962833e-49 | -8.615850e-47 |
Msa0015140 | Msa0879060 | 0.801233 | 9.919950e-49 | -8.615850e-47 |
Msa0032470 | Msa0879060 | 0.824297 | 8.712211e-54 | -8.615850e-47 |
Msa0033850 | Msa0879060 | 0.844418 | 7.654073e-59 | -8.615850e-47 |
Msa0043500 | Msa0879060 | 0.813340 | 2.690146e-51 | -8.615850e-47 |
Msa0043650 | Msa0879060 | 0.806615 | 7.546509e-50 | -8.615850e-47 |
Msa0055070 | Msa0879060 | 0.842219 | 2.955464e-58 | -8.615850e-47 |
Msa0057590 | Msa0879060 | 0.817569 | 3.080238e-52 | -8.615850e-47 |
Msa0060070 | Msa0879060 | 0.802655 | 5.060867e-49 | -8.615850e-47 |
Msa0061500 | Msa0879060 | 0.819199 | 1.316777e-52 | -8.615850e-47 |
Msa0065650 | Msa0879060 | 0.809364 | 1.962955e-50 | -8.615850e-47 |
Msa0081620 | Msa0879060 | 0.838996 | 2.063062e-57 | -8.615850e-47 |
Msa0092410 | Msa0879060 | 0.822786 | 1.966479e-53 | -8.615850e-47 |
Msa0101020 | Msa0879060 | 0.840437 | 8.701067e-58 | -8.615850e-47 |
Msa0103250 | Msa0879060 | 0.821385 | 4.153427e-53 | -8.615850e-47 |
Msa0103790 | Msa0879060 | 0.810327 | 1.217996e-50 | -8.615850e-47 |
Msa0104230 | Msa0879060 | 0.803838 | 2.879166e-49 | -8.615850e-47 |
Msa0106620 | Msa0879060 | 0.817137 | 3.854252e-52 | -8.615850e-47 |
Msa0106710 | Msa0879060 | 0.816981 | 4.178603e-52 | -8.615850e-47 |
Msa0111080 | Msa0879060 | 0.821836 | 3.266390e-53 | -8.615850e-47 |
Msa0116790 | Msa0879060 | 0.805957 | 1.038786e-49 | -8.615850e-47 |
Msa0607520 | Msa0879060 | 0.822584 | 2.190669e-53 | -8.615850e-47 |
Msa0610250 | Msa0879060 | 0.820542 | 6.490526e-53 | -8.615850e-47 |
Msa0616450 | Msa0879060 | 0.807493 | 4.920875e-50 | -8.615850e-47 |
Msa0652690 | Msa0879060 | 0.813343 | 2.685010e-51 | -8.615850e-47 |
Msa0655920 | Msa0879060 | 0.815825 | 7.578459e-52 | -8.615850e-47 |
Msa0659790 | Msa0879060 | 0.817789 | 2.748428e-52 | -8.615850e-47 |
Msa0667770 | Msa0879060 | 0.803031 | 4.232246e-49 | -8.615850e-47 |
Msa0667790 | Msa0879060 | 0.818986 | 1.472109e-52 | -8.615850e-47 |
Msa0689250 | Msa0879060 | 0.822350 | 2.483183e-53 | -8.615850e-47 |
Msa0690310 | Msa0879060 | 0.815050 | 1.127473e-51 | -8.615850e-47 |
Msa0703440 | Msa0879060 | 0.811128 | 8.173513e-51 | -8.615850e-47 |
Msa0710270 | Msa0879060 | 0.808831 | 2.552924e-50 | -8.615850e-47 |
Msa0721340 | Msa0879060 | 0.822469 | 2.329257e-53 | -8.615850e-47 |
Msa0743530 | Msa0879060 | 0.812017 | 5.237618e-51 | -8.615850e-47 |
Msa0750250 | Msa0879060 | 0.826476 | 2.656293e-54 | -8.615850e-47 |
Msa0750810 | Msa0879060 | 0.807879 | 4.074713e-50 | -8.615850e-47 |
Msa0755330 | Msa0879060 | 0.805497 | 1.297609e-49 | -8.615850e-47 |
Msa0779260 | Msa0879060 | 0.808880 | 2.491546e-50 | -8.615850e-47 |
Msa0784480 | Msa0879060 | 0.813349 | 2.677266e-51 | -8.615850e-47 |
Msa0786750 | Msa0879060 | 0.813536 | 2.435505e-51 | -8.615850e-47 |
Msa0822170 | Msa0879060 | 0.807439 | 5.051867e-50 | -8.615850e-47 |
Msa0822500 | Msa0879060 | 0.809584 | 1.760428e-50 | -8.615850e-47 |
Msa0125650 | Msa0879060 | 0.810408 | 1.170108e-50 | -8.615850e-47 |
Msa0134000 | Msa0879060 | 0.803374 | 3.594782e-49 | -8.615850e-47 |
Msa0137800 | Msa0879060 | 0.802507 | 5.429072e-49 | -8.615850e-47 |
Msa0138750 | Msa0879060 | 0.803894 | 2.803845e-49 | -8.615850e-47 |
Msa0139000 | Msa0879060 | 0.825787 | 3.874757e-54 | -8.615850e-47 |
Msa0145110 | Msa0879060 | 0.842778 | 2.100282e-58 | -8.615850e-47 |
Msa0150260 | Msa0879060 | 0.800542 | 1.372361e-48 | -8.615850e-47 |
Msa0152560 | Msa0879060 | 0.808565 | 2.910118e-50 | -8.615850e-47 |
Msa0154920 | Msa0879060 | 0.821477 | 3.954658e-53 | -8.615850e-47 |
Msa0168870 | Msa0879060 | 0.818124 | 2.308313e-52 | -8.615850e-47 |
Msa0173960 | Msa0879060 | 0.829558 | 4.814073e-55 | -8.615850e-47 |
Msa0178510 | Msa0879060 | 0.807229 | 5.596839e-50 | -8.615850e-47 |
Msa0181000 | Msa0879060 | 0.829438 | 5.147451e-55 | -8.615850e-47 |
Msa0186950 | Msa0879060 | 0.822299 | 2.550962e-53 | -8.615850e-47 |
Msa0187830 | Msa0879060 | 0.803440 | 3.482102e-49 | -8.615850e-47 |
Msa0202930 | Msa0879060 | 0.856019 | 4.268930e-62 | -8.615850e-47 |
Msa0205010 | Msa0879060 | 0.800777 | 1.229382e-48 | -8.615850e-47 |
Msa0215590 | Msa0879060 | 0.819182 | 1.328128e-52 | -8.615850e-47 |
Msa0229360 | Msa0879060 | 0.807507 | 4.886783e-50 | -8.615850e-47 |
Msa0233290 | Msa0879060 | 0.800069 | 1.713220e-48 | -8.615850e-47 |
Msa0236070 | Msa0879060 | 0.815800 | 7.679594e-52 | -8.615850e-47 |
Msa0378970 | Msa0879060 | 0.816621 | 5.033140e-52 | -8.615850e-47 |
Msa0389210 | Msa0879060 | 0.817259 | 3.617982e-52 | -8.615850e-47 |
Msa0392200 | Msa0879060 | 0.807284 | 5.448741e-50 | -8.615850e-47 |
Msa0394470 | Msa0879060 | 0.803392 | 3.563171e-49 | -8.615850e-47 |
Msa0422180 | Msa0879060 | 0.840587 | 7.949815e-58 | -8.615850e-47 |
Msa0432160 | Msa0879060 | 0.824655 | 7.177221e-54 | -8.615850e-47 |
Msa0432670 | Msa0879060 | 0.802868 | 4.573776e-49 | -8.615850e-47 |
Msa0434570 | Msa0879060 | 0.801997 | 6.913933e-49 | -8.615850e-47 |
Msa0434770 | Msa0879060 | 0.804016 | 2.644603e-49 | -8.615850e-47 |
Msa0468320 | Msa0879060 | 0.809429 | 1.900553e-50 | -8.615850e-47 |
Msa0476680 | Msa0879060 | 0.820718 | 5.916528e-53 | -8.615850e-47 |
Msa0480780 | Msa0879060 | 0.809933 | 1.481154e-50 | -8.615850e-47 |
Msa0240270 | Msa0879060 | 0.809361 | 1.965864e-50 | -8.615850e-47 |
Msa0255850 | Msa0879060 | 0.816335 | 5.832441e-52 | -8.615850e-47 |
Msa0257520 | Msa0879060 | 0.801430 | 9.036906e-49 | -8.615850e-47 |
Msa0269560 | Msa0879060 | 0.808602 | 2.857795e-50 | -8.615850e-47 |
Msa0282720 | Msa0879060 | 0.805132 | 1.547448e-49 | -8.615850e-47 |
Msa0284450 | Msa0879060 | 0.855292 | 6.956724e-62 | -8.615850e-47 |
Msa0297170 | Msa0879060 | 0.811828 | 5.758161e-51 | -8.615850e-47 |
Msa0310440 | Msa0879060 | 0.814012 | 1.913074e-51 | -8.615850e-47 |
Msa0311610 | Msa0879060 | 0.801519 | 8.665471e-49 | -8.615850e-47 |
Msa0317730 | Msa0879060 | 0.800852 | 1.186478e-48 | -8.615850e-47 |
Msa0322680 | Msa0879060 | 0.839252 | 1.771130e-57 | -8.615850e-47 |
Msa0333650 | Msa0879060 | 0.821898 | 3.161129e-53 | -8.615850e-47 |
Msa0342010 | Msa0879060 | 0.802250 | 6.132771e-49 | -8.615850e-47 |
Msa0347750 | Msa0879060 | 0.831832 | 1.334593e-55 | -8.615850e-47 |
Msa0482940 | Msa0879060 | 0.811915 | 5.512652e-51 | -8.615850e-47 |
Msa0514610 | Msa0879060 | 0.828171 | 1.042671e-54 | -8.615850e-47 |
Msa0518440 | Msa0879060 | 0.807400 | 5.149114e-50 | -8.615850e-47 |
Msa0521010 | Msa0879060 | 0.819677 | 1.024209e-52 | -8.615850e-47 |
Msa0532980 | Msa0879060 | 0.827598 | 1.432104e-54 | -8.615850e-47 |
Msa0566350 | Msa0879060 | 0.807568 | 4.744523e-50 | -8.615850e-47 |
Msa0566750 | Msa0879060 | 0.817361 | 3.431696e-52 | -8.615850e-47 |
Msa0877710 | Msa0879060 | 0.811449 | 6.961746e-51 | -8.615850e-47 |
Msa0878960 | Msa0879060 | 0.883488 | 4.302203e-71 | -8.615850e-47 |
Msa0879060 | Msa0902830 | 0.820754 | 5.803255e-53 | -8.615850e-47 |
Msa0879060 | Msa0903780 | 0.800408 | 1.461757e-48 | -8.615850e-47 |
Msa0879060 | Msa0906690 | 0.823401 | 1.412604e-53 | -8.615850e-47 |
Msa0879060 | Msa0939000 | 0.812473 | 4.165176e-51 | -8.615850e-47 |
Msa0879060 | Msa0945240 | 0.810757 | 9.832720e-51 | -8.615850e-47 |
Msa0879060 | Msa1008750 | 0.804243 | 2.372417e-49 | -8.615850e-47 |
Msa0879060 | Msa1034500 | 0.801090 | 1.060770e-48 | -8.615850e-47 |
Msa0879060 | Msa1059470 | 0.800195 | 1.615298e-48 | -8.615850e-47 |
Msa0879060 | Msa1080960 | 0.832449 | 9.391592e-56 | -8.615850e-47 |
Msa0879060 | Msa1096070 | 0.830103 | 3.545550e-55 | -8.615850e-47 |
Msa0879060 | Msa1098440 | 0.801377 | 9.265236e-49 | -8.615850e-47 |
Msa0879060 | Msa1098460 | 0.802790 | 4.747103e-49 | -8.615850e-47 |
Msa0879060 | Msa1119090 | 0.847123 | 1.410778e-59 | -8.615850e-47 |
Msa0879060 | Msa1119190 | 0.844696 | 6.441370e-59 | -8.615850e-47 |
Msa0879060 | Msa1128330 | 0.829161 | 6.009628e-55 | -8.615850e-47 |
Msa0879060 | Msa1143020 | 0.839404 | 1.616960e-57 | -8.615850e-47 |
Msa0879060 | Msa1145810 | 0.817502 | 3.189637e-52 | -8.615850e-47 |
Msa0879060 | Msa1197070 | 0.818377 | 2.023719e-52 | -8.615850e-47 |
Msa0879060 | Msa1200250 | 0.801009 | 1.102047e-48 | -8.615850e-47 |
Msa0879060 | Msa1206650 | 0.827675 | 1.372544e-54 | -8.615850e-47 |
Msa0879060 | Msa1219000 | 0.815290 | 9.971977e-52 | -8.615850e-47 |
Msa0879060 | Msa1219900 | 0.804494 | 2.102365e-49 | -8.615850e-47 |
Msa0879060 | Msa1225100 | 0.869406 | 3.171282e-66 | -8.615850e-47 |
Msa0879060 | Msa1246700 | 0.809660 | 1.695121e-50 | -8.615850e-47 |
Msa0879060 | Msa1262010 | 0.822292 | 2.560949e-53 | -8.615850e-47 |
Msa0879060 | Msa1262020 | 0.818133 | 2.298297e-52 | -8.615850e-47 |
Msa0879060 | Msa1286550 | 0.802773 | 4.785343e-49 | -8.615850e-47 |
Msa0879060 | Msa1307180 | 0.814282 | 1.668148e-51 | -8.615850e-47 |
Msa0879060 | Msa1307550 | 0.802129 | 6.495101e-49 | -8.615850e-47 |
Msa0879060 | Msa1329870 | 0.869993 | 2.040633e-66 | -8.615850e-47 |
Msa0879060 | Msa1330180 | 0.800559 | 1.361784e-48 | -8.615850e-47 |
Msa0879060 | Msa1332760 | 0.804327 | 2.278319e-49 | -8.615850e-47 |
Msa0879060 | Msa1334490 | 0.805418 | 1.348037e-49 | -8.615850e-47 |
Msa0879060 | Msa1345940 | 0.824735 | 6.869584e-54 | -8.615850e-47 |
Msa0879060 | Msa1355890 | 0.806053 | 9.912396e-50 | -8.615850e-47 |
Msa0879060 | Msa1359560 | 0.806856 | 6.713213e-50 | -8.615850e-47 |
Msa0879060 | Msa1365610 | 0.946336 | 5.607711e-105 | -8.615850e-47 |
Msa0879060 | Msa1370590 | 0.819672 | 1.026925e-52 | -8.615850e-47 |
Msa0879060 | Msa1372280 | 0.812396 | 4.329314e-51 | -8.615850e-47 |
Msa0879060 | Msa1376450 | 0.801376 | 9.272620e-49 | -8.615850e-47 |
Msa0879060 | Msa1380400 | 0.848722 | 5.115000e-60 | -8.615850e-47 |
Msa0879060 | Msa1380900 | 0.811017 | 8.638293e-51 | -8.615850e-47 |
Msa0879060 | Msa1382790 | 0.813199 | 2.889018e-51 | -8.615850e-47 |
Msa0879060 | Msa1383230 | 0.800501 | 1.398973e-48 | -8.615850e-47 |
Msa0879060 | Msa1384100 | 0.815487 | 9.015169e-52 | -8.615850e-47 |
Msa0879060 | Msa1391550 | 0.803764 | 2.983921e-49 | -8.615850e-47 |
Msa0879060 | Msa1401990 | 0.802913 | 4.477546e-49 | -8.615850e-47 |
Msa0879060 | Msa1405220 | 0.874652 | 5.714757e-68 | -8.615850e-47 |
Msa0879060 | Msa1407190 | 0.842312 | 2.791714e-58 | -8.615850e-47 |
Msa0879060 | Msa1408050 | 0.951757 | 1.040734e-109 | -8.615850e-47 |
Msa0879060 | Msa1416260 | 0.811496 | 6.801349e-51 | -8.615850e-47 |
Msa0879060 | Msa1418280 | 0.820833 | 5.564512e-53 | -8.615850e-47 |
Msa0879060 | Msa1430550 | 0.809629 | 1.721383e-50 | -8.615850e-47 |
Msa0879060 | Msa1432130 | 0.853657 | 2.066785e-61 | -8.615850e-47 |
Msa0879060 | Msa1436600 | 0.801210 | 1.002529e-48 | -8.615850e-47 |
Msa0879060 | Msa1442790 | 0.806165 | 9.392911e-50 | -8.615850e-47 |
Msa0879060 | Msa1444120 | 0.820045 | 8.439471e-53 | -8.615850e-47 |
Msa0879060 | Msa1458340 | 0.816556 | 5.202577e-52 | -8.615850e-47 |
Msa0879060 | Msa1462360 | 0.801360 | 9.342633e-49 | -8.615850e-47 |
Msa0879060 | Msa1462470 | 0.804128 | 2.505787e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0879060 | MtrunA17_Chr6g0461791 | 92.760 | 442 | 8 | 2 | 1 | 418 | 1 | 442 | 0.0 | 824 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0879060 | AT3G26670.2 | 69.037 | 436 | 106 | 5 | 1 | 409 | 1 | 434 | 0.0 | 602 |
Msa0879060 | AT3G26670.4 | 69.037 | 436 | 106 | 5 | 1 | 409 | 1 | 434 | 0.0 | 602 |
Msa0879060 | AT3G26670.3 | 69.037 | 436 | 106 | 5 | 1 | 409 | 1 | 434 | 0.0 | 602 |
Msa0879060 | AT3G26670.1 | 69.037 | 436 | 106 | 5 | 1 | 409 | 1 | 434 | 0.0 | 602 |
Find 95 sgRNAs with CRISPR-Local
Find 443 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTCAGTACTGCTGGATTT+TGG | 0.142862 | 6_1:-20604293 | Msa0879060:CDS |
TGCATAAGAAGTACATTTAA+AGG | 0.157238 | 6_1:+20601021 | None:intergenic |
TGTGCACTATCTCTTGGTTT+TGG | 0.174892 | 6_1:-20601464 | Msa0879060:CDS |
GAATTACCTGAAATTGAAAT+TGG | 0.200167 | 6_1:+20607913 | None:intergenic |
GGGACCAATCTTCTCAAATT+AGG | 0.200420 | 6_1:-20607294 | Msa0879060:CDS |
TCAAAGGGAAAGAGAAAATA+AGG | 0.211957 | 6_1:+20608002 | None:intergenic |
GCTAACCCAATTTCAATTTC+AGG | 0.215805 | 6_1:-20607919 | Msa0879060:intron |
TCTTAGCCGTTACTTGTAAA+TGG | 0.216028 | 6_1:+20604844 | None:intergenic |
TCTTATGCAAATATATATAA+AGG | 0.264531 | 6_1:-20601007 | Msa0879060:three_prime_UTR |
GATAAAGATTACAGATATTC+TGG | 0.265706 | 6_1:-20601592 | Msa0879060:CDS |
TTGATACAATACAACAATTA+AGG | 0.267071 | 6_1:-20607487 | Msa0879060:five_prime_UTR |
GCCACAGCTTTCATTGTTCT+TGG | 0.284449 | 6_1:-20605190 | Msa0879060:CDS |
GTTCATTGGTATTTCTTTGC+TGG | 0.299314 | 6_1:-20602127 | Msa0879060:CDS |
TGAGACTAAAGATAGTTCTT+TGG | 0.302978 | 6_1:-20601996 | Msa0879060:CDS |
AGCCAAAGGAAATGAAATTA+AGG | 0.313097 | 6_1:+20605739 | None:intergenic |
TGCCTTAATTTCATTTCCTT+TGG | 0.323753 | 6_1:-20605741 | Msa0879060:CDS |
CAACTCTGAAAGTATATAAT+AGG | 0.327966 | 6_1:+20605890 | None:intergenic |
GTCTTTGCTGTGTGCTTCTT+CGG | 0.331223 | 6_1:+20601641 | None:intergenic |
ACATGACCTCAAACCCATTT+GGG | 0.334317 | 6_1:-20604722 | Msa0879060:CDS |
GGTAGTATTGCTATAAACTT+TGG | 0.334523 | 6_1:-20607315 | Msa0879060:CDS |
CCTCTTTGTTTCTGTTGAAA+TGG | 0.356734 | 6_1:+20601955 | None:intergenic |
TTACTTTGTGTTGAACAAAA+TGG | 0.359982 | 6_1:-20605340 | Msa0879060:CDS |
TTATAGCAATACTACCAAAA+AGG | 0.362873 | 6_1:+20607322 | None:intergenic |
TTCATTCTTGATGACATCAT+TGG | 0.366184 | 6_1:+20601404 | None:intergenic |
TTCCTTTGGCTATGCTGCTC+AGG | 0.369645 | 6_1:-20605727 | Msa0879060:CDS |
CAATTACAATCAAAGCTAAA+AGG | 0.375249 | 6_1:+20604882 | None:intergenic |
AACAGGTATTTGACACGTTA+AGG | 0.379853 | 6_1:-20602182 | Msa0879060:intron |
CGGCAATAGCATACCCCAAA+TGG | 0.385675 | 6_1:+20604708 | None:intergenic |
GACATGACCTCAAACCCATT+TGG | 0.390111 | 6_1:-20604723 | Msa0879060:CDS |
GAACTTCTGCTTGCTATATC+AGG | 0.394740 | 6_1:-20604745 | Msa0879060:CDS |
CTTGGAAGTGATGGGGTACA+TGG | 0.397753 | 6_1:-20605929 | Msa0879060:CDS |
GTGTCCTAATTTGAGAAGAT+TGG | 0.402950 | 6_1:+20607290 | None:intergenic |
ACTTCTTGTGCACTATCTCT+TGG | 0.403283 | 6_1:-20601470 | Msa0879060:CDS |
ACAAATAATTGAATTATGAA+TGG | 0.404575 | 6_1:+20601155 | None:intergenic |
TATTTCTCTGTCAACTGCTC+TGG | 0.408057 | 6_1:+20604929 | None:intergenic |
TTGTCCTTTAAACAGGGTAT+TGG | 0.422996 | 6_1:-20605215 | Msa0879060:intron |
GTAGTATTGCTATAAACTTT+GGG | 0.425761 | 6_1:-20607314 | Msa0879060:CDS |
AATTACCTGAAATTGAAATT+GGG | 0.427021 | 6_1:+20607914 | None:intergenic |
TTACGACTGGCTATGTCTAA+TGG | 0.429669 | 6_1:-20604360 | Msa0879060:CDS |
AGGACAACAATGTTTATACT+TGG | 0.430760 | 6_1:-20602162 | Msa0879060:CDS |
TGAAATTGAAATTGTGATGT+TGG | 0.452255 | 6_1:+20607943 | None:intergenic |
TTTGTTTCTGTTGAAATGGC+AGG | 0.454053 | 6_1:+20601959 | None:intergenic |
CAGAGAGAAAGACATTTACT+TGG | 0.454553 | 6_1:-20605947 | Msa0879060:CDS |
CTATTATATACTTTCAGAGT+TGG | 0.454723 | 6_1:-20605889 | Msa0879060:CDS |
ATTTGAGAGCTAAGTTGTGT+TGG | 0.462020 | 6_1:-20607439 | Msa0879060:five_prime_UTR |
ATGGCTATCAGCTGCACAGC+TGG | 0.462592 | 6_1:-20604341 | Msa0879060:CDS |
AGACATTTACTTGGAAGTGA+TGG | 0.463692 | 6_1:-20605938 | Msa0879060:CDS |
TAGACATAGCCAGTCGTAAG+AGG | 0.475251 | 6_1:+20604364 | None:intergenic |
TACTTTCAGAGTTGGAGAAT+CGG | 0.476261 | 6_1:-20605881 | Msa0879060:intron |
CTTATGCAAATATATATAAA+GGG | 0.476459 | 6_1:-20601006 | Msa0879060:three_prime_UTR |
TTCCCATGTTTCAAATAGCA+TGG | 0.482456 | 6_1:-20604131 | Msa0879060:CDS |
ATGACTAACAAACACTATCA+AGG | 0.484016 | 6_1:+20601254 | None:intergenic |
CAAAGGGAAAGAGAAAATAA+GGG | 0.486325 | 6_1:+20608003 | None:intergenic |
TTTGTTGCATCTTCATCCAT+AGG | 0.490370 | 6_1:+20601311 | None:intergenic |
GACATTTACTTGGAAGTGAT+GGG | 0.492218 | 6_1:-20605937 | Msa0879060:CDS |
ACATTCTTCTCAATCTGTAC+AGG | 0.494590 | 6_1:-20604108 | Msa0879060:CDS |
GGAATGATGTGTGTGTTCAT+TGG | 0.500051 | 6_1:-20602141 | Msa0879060:CDS |
GAAATTGAAATTGTGATGTT+GGG | 0.503872 | 6_1:+20607944 | None:intergenic |
TAAGTTACATACCAGGTGAT+TGG | 0.511073 | 6_1:+20605137 | None:intergenic |
ATGATGTCATCAAGAATGAA+TGG | 0.511671 | 6_1:-20601401 | Msa0879060:CDS |
GCATACCCCAAATGGGTTTG+AGG | 0.512283 | 6_1:+20604716 | None:intergenic |
CTGGCACCTGATGAATCAAA+AGG | 0.517430 | 6_1:-20602108 | Msa0879060:intron |
GGCAATAGCATACCCCAAAT+GGG | 0.523524 | 6_1:+20604709 | None:intergenic |
CAGATGACTAGGTTGAATGA+AGG | 0.523979 | 6_1:-20604183 | Msa0879060:CDS |
TCATCGCCGTAGGATTTCCC+AGG | 0.530393 | 6_1:-20601235 | Msa0879060:three_prime_UTR |
TGGTTGGAGCAAAATACCTA+TGG | 0.531629 | 6_1:-20601327 | Msa0879060:CDS |
ATGAATGGCTTCAGAGGCAA+TGG | 0.532560 | 6_1:-20601386 | Msa0879060:CDS |
TATCGATGAGAAATTCTGGT+TGG | 0.535924 | 6_1:-20601343 | Msa0879060:CDS |
GTCCATGCTATTTGAAACAT+GGG | 0.543572 | 6_1:+20604129 | None:intergenic |
TGTCCATGCTATTTGAAACA+TGG | 0.547427 | 6_1:+20604128 | None:intergenic |
AGATATTCTGGTCAAGGCAA+AGG | 0.550087 | 6_1:-20601580 | Msa0879060:intron |
CAGTTCTAACCTCTTACGAC+TGG | 0.564450 | 6_1:-20604373 | Msa0879060:CDS |
TCAAGAATGAATGGCTTCAG+AGG | 0.564716 | 6_1:-20601392 | Msa0879060:CDS |
GATTACAGATATTCTGGTCA+AGG | 0.568159 | 6_1:-20601586 | Msa0879060:CDS |
ACTGAGAAATAAAAGAAGCA+TGG | 0.568619 | 6_1:+20604308 | None:intergenic |
AATAAGAATTGCATCGAACA+TGG | 0.577173 | 6_1:+20604155 | None:intergenic |
TCAAAGCTAAAAGGTACAGA+AGG | 0.587426 | 6_1:+20604891 | None:intergenic |
GTACAGAAGGAACGCGACAT+TGG | 0.594650 | 6_1:+20604904 | None:intergenic |
AACAAACACTATCAAGGGCT+AGG | 0.595279 | 6_1:+20601260 | None:intergenic |
ATAAAGGGTATGCATGATGT+TGG | 0.595603 | 6_1:-20600991 | Msa0879060:three_prime_UTR |
GTTGGGTTGAATTGAATCGA+AGG | 0.613516 | 6_1:+20607961 | None:intergenic |
CGAAAACCTGGGAAATCCTA+CGG | 0.614057 | 6_1:+20601229 | None:intergenic |
TGACTAACAAACACTATCAA+GGG | 0.614771 | 6_1:+20601255 | None:intergenic |
TGTTTGTTAGTCATCGCCGT+AGG | 0.628588 | 6_1:-20601245 | Msa0879060:three_prime_UTR |
TGAAATGGCAGGAGACACTA+CGG | 0.632048 | 6_1:+20601970 | None:intergenic |
AAACACTATCAAGGGCTAGG+AGG | 0.632929 | 6_1:+20601263 | None:intergenic |
CCATTTCAACAGAAACAAAG+AGG | 0.633660 | 6_1:-20601955 | Msa0879060:intron |
TCCAAGAACAATGAAAGCTG+TGG | 0.636557 | 6_1:+20605189 | None:intergenic |
TTTGGAAATCACCAATCACC+TGG | 0.643242 | 6_1:-20605148 | Msa0879060:intron |
TCAGAGGCAATGGACTCGAA+CGG | 0.648762 | 6_1:-20601376 | Msa0879060:CDS |
ACACAAAGTAAGCGAATGCG+AGG | 0.654505 | 6_1:+20605352 | None:intergenic |
ACATTTACTTGGAAGTGATG+GGG | 0.654846 | 6_1:-20605936 | Msa0879060:CDS |
TACCTGAGCAGCATAGCCAA+AGG | 0.659340 | 6_1:+20605725 | None:intergenic |
TCTCAAATTAGGACACAATG+AGG | 0.672040 | 6_1:-20607283 | Msa0879060:intron |
CATGACCTCAAACCCATTTG+GGG | 0.699560 | 6_1:-20604721 | Msa0879060:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATAATTTGATCAAAAAA+GGG | + | chr6_1:20601423-20601442 | None:intergenic | 10.0% |
!!! | AATTATTTTGTGTTTTTATA+TGG | - | chr6_1:20601434-20601453 | Msa0879060:CDS | 10.0% |
!! | AAAATAATAACTATTTAATG+AGG | - | chr6_1:20601457-20601476 | Msa0879060:CDS | 10.0% |
!! | TTTAATATTACAAATACAAT+GGG | + | chr6_1:20605291-20605310 | None:intergenic | 10.0% |
!!! | TTTTAATATTACAAATACAA+TGG | + | chr6_1:20605292-20605311 | None:intergenic | 10.0% |
!! | AAATTGAAATACTATAAATA+GGG | - | chr6_1:20606010-20606029 | Msa0879060:intron | 10.0% |
!! | TTAATATGAGAAATATTAAA+GGG | - | chr6_1:20606300-20606319 | Msa0879060:intron | 10.0% |
!!! | ATTATAGATTGAAAATTTTA+GGG | - | chr6_1:20606390-20606409 | Msa0879060:intron | 10.0% |
!!! | TGTTTTTTCATAATAAATTT+AGG | - | chr6_1:20606889-20606908 | Msa0879060:intron | 10.0% |
!!! | ATAAATACAAAATTGTTTTA+AGG | - | chr6_1:20607039-20607058 | Msa0879060:intron | 10.0% |
!! | CAAAATAATTTGATCAAAAA+AGG | + | chr6_1:20601424-20601443 | None:intergenic | 15.0% |
!!! | ATTACATTTTTTAAGGTTTA+TGG | - | chr6_1:20601531-20601550 | Msa0879060:intron | 15.0% |
!!! | ATTGATTTTCAACATTATAA+GGG | - | chr6_1:20602733-20602752 | Msa0879060:intron | 15.0% |
!! | ACTTAAAAGAAATAATTAGA+GGG | + | chr6_1:20603098-20603117 | None:intergenic | 15.0% |
!! | AACTTAAAAGAAATAATTAG+AGG | + | chr6_1:20603099-20603118 | None:intergenic | 15.0% |
!! | ATCATAAAATTACATATGTT+AGG | + | chr6_1:20603455-20603474 | None:intergenic | 15.0% |
!!! | ATCAAATGAACTTTTTTTTA+AGG | + | chr6_1:20603681-20603700 | None:intergenic | 15.0% |
!!! | AATTTTTTTTACCGAAAAAT+AGG | + | chr6_1:20604859-20604878 | None:intergenic | 15.0% |
!! | TTCTTAAATATATATCCTAA+GGG | + | chr6_1:20605210-20605229 | None:intergenic | 15.0% |
!! | TGAAATAATTTCAAAATACT+TGG | - | chr6_1:20605386-20605405 | Msa0879060:intron | 15.0% |
!! | GAAATTGAAATACTATAAAT+AGG | - | chr6_1:20606009-20606028 | Msa0879060:intron | 15.0% |
!! | AATTGAAATACTATAAATAG+GGG | - | chr6_1:20606011-20606030 | Msa0879060:intron | 15.0% |
!! | CTTAATATGAGAAATATTAA+AGG | - | chr6_1:20606299-20606318 | Msa0879060:intron | 15.0% |
!!! | GATTATAGATTGAAAATTTT+AGG | - | chr6_1:20606389-20606408 | Msa0879060:intron | 15.0% |
!! | ACAAATAATTGAATTATGAA+TGG | + | chr6_1:20607968-20607987 | None:intergenic | 15.0% |
!! | TCTTATGCAAATATATATAA+AGG | - | chr6_1:20608113-20608132 | Msa0879060:five_prime_UTR | 15.0% |
!! | CTTATGCAAATATATATAAA+GGG | - | chr6_1:20608114-20608133 | Msa0879060:five_prime_UTR | 15.0% |
!!! | TAGATAAAGAAGAATTTTCT+TGG | + | chr6_1:20601014-20601033 | None:intergenic | 20.0% |
!!! | ATGAGAATTTTGAATTCAAA+GGG | + | chr6_1:20601136-20601155 | None:intergenic | 20.0% |
!!! | AATGAGAATTTTGAATTCAA+AGG | + | chr6_1:20601137-20601156 | None:intergenic | 20.0% |
!! | AATTACCTGAAATTGAAATT+GGG | + | chr6_1:20601209-20601228 | None:intergenic | 20.0% |
!!! | ATCTAGGTTTTATTTCAATT+GGG | - | chr6_1:20601319-20601338 | Msa0879060:CDS | 20.0% |
!!! | GTACTTGATTACATTTTTTA+AGG | - | chr6_1:20601524-20601543 | Msa0879060:intron | 20.0% |
!!! | TTTTTAAGGTTTATGGATTT+TGG | - | chr6_1:20601538-20601557 | Msa0879060:intron | 20.0% |
!!! | TTTATGTTTGTTAATGAAAC+AGG | - | chr6_1:20601574-20601593 | Msa0879060:intron | 20.0% |
!! | TTGATACAATACAACAATTA+AGG | - | chr6_1:20601633-20601652 | Msa0879060:CDS | 20.0% |
!! | AGAACTTGAAATACTTTAAA+AGG | - | chr6_1:20602345-20602364 | Msa0879060:intron | 20.0% |
!! | TTATATATAACAGAACATTG+TGG | - | chr6_1:20602406-20602425 | Msa0879060:intron | 20.0% |
!!! | CATTGATTTTCAACATTATA+AGG | - | chr6_1:20602732-20602751 | Msa0879060:intron | 20.0% |
!!! | TTATCTTTTGTTCTAAACTA+AGG | - | chr6_1:20602799-20602818 | Msa0879060:intron | 20.0% |
!!! | TTGTATAAATTTTGATATGC+AGG | - | chr6_1:20603331-20603350 | Msa0879060:intron | 20.0% |
!! | AATTTCCAAGAAAGAAAAAT+AGG | + | chr6_1:20603360-20603379 | None:intergenic | 20.0% |
!!! | GTCATTTTCTTAAAATACTA+TGG | - | chr6_1:20603607-20603626 | Msa0879060:intron | 20.0% |
!! | TTAATATTTGTCCTTTAAAC+AGG | - | chr6_1:20603898-20603917 | Msa0879060:intron | 20.0% |
!! | TAATATTTGTCCTTTAAACA+GGG | - | chr6_1:20603899-20603918 | Msa0879060:intron | 20.0% |
!!! | TTTTTTTCTGAAGCTTAATA+TGG | + | chr6_1:20604084-20604103 | None:intergenic | 20.0% |
!! | AATTAAATGTAATCATGTGT+CGG | + | chr6_1:20604606-20604625 | None:intergenic | 20.0% |
!! | TTTCGGTAAAAAAAATTCTT+AGG | - | chr6_1:20604862-20604881 | Msa0879060:CDS | 20.0% |
!!! | TACAGGATTTATATATTTTC+AGG | - | chr6_1:20605029-20605048 | Msa0879060:intron | 20.0% |
!!! | TATATATTTTCAGGAATATC+AGG | - | chr6_1:20605038-20605057 | Msa0879060:intron | 20.0% |
!! | AGAAGTTAAAATCAAACTTA+TGG | - | chr6_1:20605149-20605168 | Msa0879060:CDS | 20.0% |
!! | GTTCTTAAATATATATCCTA+AGG | + | chr6_1:20605211-20605230 | None:intergenic | 20.0% |
!! | TAATTTCAAAATACTTGGTT+TGG | - | chr6_1:20605391-20605410 | Msa0879060:intron | 20.0% |
!! | ATTGAAATACTATAAATAGG+GGG | - | chr6_1:20606012-20606031 | Msa0879060:intron | 20.0% |
!!! | GAAATATTAAAGGGTATATT+AGG | - | chr6_1:20606309-20606328 | Msa0879060:intron | 20.0% |
!! | TACTTCATAATAATCAAAGT+TGG | + | chr6_1:20606525-20606544 | None:intergenic | 20.0% |
!! | GTCTACTTATTAAGAATAAA+CGG | + | chr6_1:20606676-20606695 | None:intergenic | 20.0% |
!!! | ATATGATAATTGTTCACTTT+TGG | + | chr6_1:20607213-20607232 | None:intergenic | 20.0% |
!! | TATATCAGATAAAACAGTAT+TGG | + | chr6_1:20607444-20607463 | None:intergenic | 20.0% |
!!! | AATACTGTTTTATCTGATAT+AGG | - | chr6_1:20607443-20607462 | Msa0879060:five_prime_UTR | 20.0% |
!! | AAAAAATAAATCGAAAACCT+GGG | + | chr6_1:20607905-20607924 | None:intergenic | 20.0% |
!! | AAAAAAATAAATCGAAAACC+TGG | + | chr6_1:20607906-20607925 | None:intergenic | 20.0% |
!! | ACACCAATCATTAAAAAAAT+CGG | + | chr6_1:20607931-20607950 | None:intergenic | 20.0% |
!!! | TTTTTATCCTTTTTTCCTTA+GGG | + | chr6_1:20608017-20608036 | None:intergenic | 20.0% |
!!! | TTTTTTATCCTTTTTTCCTT+AGG | + | chr6_1:20608018-20608037 | None:intergenic | 20.0% |
! | GAAATTGAAATTGTGATGTT+GGG | + | chr6_1:20601179-20601198 | None:intergenic | 25.0% |
! | TGAAATTGAAATTGTGATGT+TGG | + | chr6_1:20601180-20601199 | None:intergenic | 25.0% |
! | GAATTACCTGAAATTGAAAT+TGG | + | chr6_1:20601210-20601229 | None:intergenic | 25.0% |
!!! | GATCTAGGTTTTATTTCAAT+TGG | - | chr6_1:20601318-20601337 | Msa0879060:CDS | 25.0% |
!!! | TTATAGTGTTGTTTTGAAAC+TGG | - | chr6_1:20601598-20601617 | Msa0879060:CDS | 25.0% |
! | TTATAGCAATACTACCAAAA+AGG | + | chr6_1:20601801-20601820 | None:intergenic | 25.0% |
! | GTAGTATTGCTATAAACTTT+GGG | - | chr6_1:20601806-20601825 | Msa0879060:intron | 25.0% |
!! | CTTTTATGTATGTATATGCA+CGG | - | chr6_1:20601905-20601924 | Msa0879060:intron | 25.0% |
! | TAAAATGACAGAGAAATAGA+AGG | - | chr6_1:20601990-20602009 | Msa0879060:CDS | 25.0% |
! | AAAATTCCCTTTAATTCGAA+CGG | + | chr6_1:20602080-20602099 | None:intergenic | 25.0% |
! | TTGTAAGCTGAAATCTTATA+AGG | + | chr6_1:20602507-20602526 | None:intergenic | 25.0% |
! | TAATTCTCGAGTTAATCAAT+TGG | - | chr6_1:20602529-20602548 | Msa0879060:intron | 25.0% |
!! | CAACTCTGAAAGTATATAAT+AGG | + | chr6_1:20603233-20603252 | None:intergenic | 25.0% |
! | CTATTATATACTTTCAGAGT+TGG | - | chr6_1:20603231-20603250 | Msa0879060:intron | 25.0% |
! | TGTAATTGCATATATGTATG+TGG | - | chr6_1:20603267-20603286 | Msa0879060:intron | 25.0% |
! | TTACTTTGTGTTGAACAAAA+TGG | - | chr6_1:20603780-20603799 | Msa0879060:intron | 25.0% |
!! | TTACATTGGTAGAACAATTT+TGG | + | chr6_1:20603862-20603881 | None:intergenic | 25.0% |
! | TATGAAATAAGTTACATACC+AGG | + | chr6_1:20603993-20604012 | None:intergenic | 25.0% |
!!! | ATATGAACATTGATTTCACA+AGG | + | chr6_1:20604044-20604063 | None:intergenic | 25.0% |
! | AGAAAAAATGCTCATTTCAA+TGG | - | chr6_1:20604122-20604141 | Msa0879060:CDS | 25.0% |
! | CAATTACAATCAAAGCTAAA+AGG | + | chr6_1:20604241-20604260 | None:intergenic | 25.0% |
!! | AGAGTAGACTTATGAATTTT+AGG | + | chr6_1:20605233-20605252 | None:intergenic | 25.0% |
! | AAATTATTTCAGCGATGATA+TGG | + | chr6_1:20605377-20605396 | None:intergenic | 25.0% |
!!! | TTTTATGGAGAAGTACTTAT+AGG | - | chr6_1:20605921-20605940 | Msa0879060:CDS | 25.0% |
! | ATATGCAATTACATGTAATC+AGG | - | chr6_1:20606209-20606228 | Msa0879060:intron | 25.0% |
!! | TTAGGAAAGTACACTATTAA+AGG | - | chr6_1:20606327-20606346 | Msa0879060:intron | 25.0% |
!! | TAGGAAAGTACACTATTAAA+GGG | - | chr6_1:20606328-20606347 | Msa0879060:intron | 25.0% |
! | CTAAATTCATTGAGTTAACT+AGG | - | chr6_1:20606367-20606386 | Msa0879060:intron | 25.0% |
!!! | AAAATTTTAGGGATGCAAAT+GGG | - | chr6_1:20606401-20606420 | Msa0879060:intron | 25.0% |
!! | AGGATTTTTCTAATGAATAG+CGG | - | chr6_1:20606576-20606595 | Msa0879060:intron | 25.0% |
! | ATTAAGAATAAACGGAGTTA+TGG | + | chr6_1:20606668-20606687 | None:intergenic | 25.0% |
! | ATAAAAGTTGTAGAAGTGAT+AGG | + | chr6_1:20606811-20606830 | None:intergenic | 25.0% |
!!! | ATAATACCTTTTGATTCATC+AGG | + | chr6_1:20607021-20607040 | None:intergenic | 25.0% |
! | ATATTAACCTTTGAATACCT+CGG | + | chr6_1:20607077-20607096 | None:intergenic | 25.0% |
!! | AATCATTTAGTTTCCTTTCA+GGG | + | chr6_1:20607247-20607266 | None:intergenic | 25.0% |
! | GATAAAGATTACAGATATTC+TGG | - | chr6_1:20607528-20607547 | Msa0879060:five_prime_UTR | 25.0% |
!! | ATTTTATCGATGAGAAATTC+TGG | - | chr6_1:20607773-20607792 | Msa0879060:intron | 25.0% |
!!! | TCTCCGATTTTTTTAATGAT+TGG | - | chr6_1:20607925-20607944 | Msa0879060:five_prime_UTR | 25.0% |
!! | TTTTATCCTTTTTTCCTTAG+GGG | + | chr6_1:20608016-20608035 | None:intergenic | 25.0% |
!! | TGCATAAGAAGTACATTTAA+AGG | + | chr6_1:20608102-20608121 | None:intergenic | 25.0% |
! | ATTTTCTTGGTCCAAAAAAG+AGG | + | chr6_1:20601001-20601020 | None:intergenic | 30.0% |
CAAAGGGAAAGAGAAAATAA+GGG | + | chr6_1:20601120-20601139 | None:intergenic | 30.0% | |
TCAAAGGGAAAGAGAAAATA+AGG | + | chr6_1:20601121-20601140 | None:intergenic | 30.0% | |
CATACACAATGCAATTTCTT+TGG | - | chr6_1:20601237-20601256 | Msa0879060:three_prime_UTR | 30.0% | |
CCTAGATCTACTAAATTTGT+AGG | + | chr6_1:20601306-20601325 | None:intergenic | 30.0% | |
CCTACAAATTTAGTAGATCT+AGG | - | chr6_1:20601303-20601322 | Msa0879060:CDS | 30.0% | |
! | GTACAACATCTTTTATCCAT+GGG | - | chr6_1:20601748-20601767 | Msa0879060:intron | 30.0% |
! | TACAACATCTTTTATCCATG+GGG | - | chr6_1:20601749-20601768 | Msa0879060:intron | 30.0% |
GGTAGTATTGCTATAAACTT+TGG | - | chr6_1:20601805-20601824 | Msa0879060:intron | 30.0% | |
!!! | TTCTCTGTCATTTTATACTG+TGG | + | chr6_1:20601985-20602004 | None:intergenic | 30.0% |
AAAACTACCGTTCGAATTAA+AGG | - | chr6_1:20602070-20602089 | Msa0879060:intron | 30.0% | |
AAACTACCGTTCGAATTAAA+GGG | - | chr6_1:20602071-20602090 | Msa0879060:intron | 30.0% | |
ACATATTGTAGAAACGATGA+TGG | - | chr6_1:20602226-20602245 | Msa0879060:intron | 30.0% | |
CATATTGTAGAAACGATGAT+GGG | - | chr6_1:20602227-20602246 | Msa0879060:intron | 30.0% | |
AAACTCAGTATAGGTTGTTT+GGG | - | chr6_1:20602250-20602269 | Msa0879060:intron | 30.0% | |
!! | CAGATAGAGAGTATTGAAAT+TGG | - | chr6_1:20602309-20602328 | Msa0879060:intron | 30.0% |
!! | TAGAGAGTATTGAAATTGGT+AGG | - | chr6_1:20602313-20602332 | Msa0879060:intron | 30.0% |
!! | AGAGAGTATTGAAATTGGTA+GGG | - | chr6_1:20602314-20602333 | Msa0879060:intron | 30.0% |
ACTGTTAAGACAGAGATTAT+TGG | - | chr6_1:20602369-20602388 | Msa0879060:intron | 30.0% | |
CTGTTAAGACAGAGATTATT+GGG | - | chr6_1:20602370-20602389 | Msa0879060:intron | 30.0% | |
GATGTAAGAAGATACAAATG+AGG | + | chr6_1:20602612-20602631 | None:intergenic | 30.0% | |
TGATAGCAATGTTGTGAATA+AGG | - | chr6_1:20602640-20602659 | Msa0879060:intron | 30.0% | |
! | TGAGGTATATCTTTTGGATT+AGG | - | chr6_1:20602666-20602685 | Msa0879060:intron | 30.0% |
!! | GTATATCTTTTGGATTAGGA+GGG | - | chr6_1:20602670-20602689 | Msa0879060:intron | 30.0% |
! | CAACATTATAAGGGTATGTT+TGG | - | chr6_1:20602742-20602761 | Msa0879060:intron | 30.0% |
! | ATTATAAGGGTATGTTTGGA+TGG | - | chr6_1:20602746-20602765 | Msa0879060:intron | 30.0% |
TATGTTTGGATGGATGATTT+CGG | + | chr6_1:20602940-20602959 | None:intergenic | 30.0% | |
! | CTTTACTTTAAGGGTATGTT+TGG | + | chr6_1:20602954-20602973 | None:intergenic | 30.0% |
GTTTCAGTGCTTTACTTTAA+GGG | + | chr6_1:20602963-20602982 | None:intergenic | 30.0% | |
TGTTTCAGTGCTTTACTTTA+AGG | + | chr6_1:20602964-20602983 | None:intergenic | 30.0% | |
CACATGACATGAACAAAAAT+CGG | + | chr6_1:20603008-20603027 | None:intergenic | 30.0% | |
GTTGCAATATCAAATTAGTC+TGG | - | chr6_1:20603116-20603135 | Msa0879060:intron | 30.0% | |
AAAAACAAGAATCAGCAACA+TGG | + | chr6_1:20603309-20603328 | None:intergenic | 30.0% | |
!!! | ATGTTGCTGATTCTTGTTTT+TGG | - | chr6_1:20603308-20603327 | Msa0879060:intron | 30.0% |
!! | GGTATCCTATTTTTCTTTCT+TGG | - | chr6_1:20603352-20603371 | Msa0879060:intron | 30.0% |
TGCCTTAATTTCATTTCCTT+TGG | - | chr6_1:20603379-20603398 | Msa0879060:intron | 30.0% | |
AGCCAAAGGAAATGAAATTA+AGG | + | chr6_1:20603384-20603403 | None:intergenic | 30.0% | |
! | AAAACATCCAATAAGTATCG+TGG | + | chr6_1:20603431-20603450 | None:intergenic | 30.0% |
TTGAATGTATTCACATGTGT+CGG | + | chr6_1:20603583-20603602 | None:intergenic | 30.0% | |
!! | GTAGAACAATTTTGGTGAAA+AGG | + | chr6_1:20603854-20603873 | None:intergenic | 30.0% |
TCTACCAATGTAAATTCTTG+TGG | - | chr6_1:20603869-20603888 | Msa0879060:intron | 30.0% | |
TAAGCCACAAGAATTTACAT+TGG | + | chr6_1:20603876-20603895 | None:intergenic | 30.0% | |
!!! | AATGTTTTTCTAGTTGCGTT+TGG | - | chr6_1:20603954-20603973 | Msa0879060:intron | 30.0% |
GTGCAAACTAATTTATGTGA+CGG | - | chr6_1:20604144-20604163 | Msa0879060:CDS | 30.0% | |
ATCACTCCATTTACAAGTAA+CGG | - | chr6_1:20604270-20604289 | Msa0879060:intron | 30.0% | |
GATTAAAATGTGAAATGTGC+AGG | - | chr6_1:20604346-20604365 | Msa0879060:CDS | 30.0% | |
GAAACTACAGCATATGAAAA+CGG | + | chr6_1:20604435-20604454 | None:intergenic | 30.0% | |
! | GTTTTCATATGCTGTAGTTT+CGG | - | chr6_1:20604434-20604453 | Msa0879060:intron | 30.0% |
! | TTTTCATATGCTGTAGTTTC+GGG | - | chr6_1:20604435-20604454 | Msa0879060:intron | 30.0% |
ACTGTGTACTTTATTCCTAA+TGG | - | chr6_1:20604710-20604729 | Msa0879060:CDS | 30.0% | |
ACTGAGAAATAAAAGAAGCA+TGG | + | chr6_1:20604815-20604834 | None:intergenic | 30.0% | |
! | TTCTAATTTTGCAGATGACT+AGG | - | chr6_1:20604926-20604945 | Msa0879060:CDS | 30.0% |
AATAAGAATTGCATCGAACA+TGG | + | chr6_1:20604968-20604987 | None:intergenic | 30.0% | |
TCATAAGTCTACTCTTACTT+TGG | - | chr6_1:20605238-20605257 | Msa0879060:intron | 30.0% | |
GTAGTTTCTGAGTAAGAATT+CGG | - | chr6_1:20605554-20605573 | Msa0879060:intron | 30.0% | |
!! | CTAATGGATTGTAAAAACGA+GGG | + | chr6_1:20605702-20605721 | None:intergenic | 30.0% |
!! | TCTAATGGATTGTAAAAACG+AGG | + | chr6_1:20605703-20605722 | None:intergenic | 30.0% |
!! | TCGTTTTTACAATCCATTAG+AGG | - | chr6_1:20605702-20605721 | Msa0879060:intron | 30.0% |
!! | CTTATATGTTGCTATTTCCT+GGG | - | chr6_1:20605749-20605768 | Msa0879060:CDS | 30.0% |
! | GGAAAATAAGGTCTTTTGTA+AGG | + | chr6_1:20605881-20605900 | None:intergenic | 30.0% |
!! | GAAAATTTTAGGGATGCAAA+TGG | - | chr6_1:20606400-20606419 | Msa0879060:intron | 30.0% |
!!! | CTTTGTAAGTTTTGTTCAGA+TGG | - | chr6_1:20606493-20606512 | Msa0879060:intron | 30.0% |
TTAATAAGTAGACATCCTTC+CGG | - | chr6_1:20606683-20606702 | Msa0879060:intron | 30.0% | |
AACCTTATCTTCATGAAAAC+AGG | - | chr6_1:20606921-20606940 | Msa0879060:intron | 30.0% | |
! | TACCTGTTTTCATGAAGATA+AGG | + | chr6_1:20606926-20606945 | None:intergenic | 30.0% |
AGGACAACAATGTTTATACT+TGG | - | chr6_1:20606958-20606977 | Msa0879060:intron | 30.0% | |
! | TAAGGTTTTACTATAAACCG+AGG | - | chr6_1:20607057-20607076 | Msa0879060:intron | 30.0% |
TGAGACTAAAGATAGTTCTT+TGG | - | chr6_1:20607124-20607143 | Msa0879060:intron | 30.0% | |
! | CAATCATTTAGTTTCCTTTC+AGG | + | chr6_1:20607248-20607267 | None:intergenic | 30.0% |
! | TAAGCACATGTTGCTTATTA+TGG | - | chr6_1:20607402-20607421 | Msa0879060:five_prime_UTR | 30.0% |
! | AAGCACATGTTGCTTATTAT+GGG | - | chr6_1:20607403-20607422 | Msa0879060:five_prime_UTR | 30.0% |
! | CAAAGGTATATCATTATGAC+TGG | - | chr6_1:20607557-20607576 | Msa0879060:intron | 30.0% |
! | TTCATTCTTGATGACATCAT+TGG | + | chr6_1:20607719-20607738 | None:intergenic | 30.0% |
ATGATGTCATCAAGAATGAA+TGG | - | chr6_1:20607719-20607738 | Msa0879060:intron | 30.0% | |
TGACTAACAAACACTATCAA+GGG | + | chr6_1:20607868-20607887 | None:intergenic | 30.0% | |
ATGACTAACAAACACTATCA+AGG | + | chr6_1:20607869-20607888 | None:intergenic | 30.0% | |
!!! | TTTATCCTTTTTTCCTTAGG+GGG | + | chr6_1:20608015-20608034 | None:intergenic | 30.0% |
GCTAACCCAATTTCAATTTC+AGG | - | chr6_1:20601201-20601220 | Msa0879060:three_prime_UTR | 35.0% | |
ATTTGAGAGCTAAGTTGTGT+TGG | - | chr6_1:20601681-20601700 | Msa0879060:intron | 35.0% | |
! | ATCAAATTTTGTGCTGCATG+TGG | - | chr6_1:20601712-20601731 | Msa0879060:intron | 35.0% |
! | GGTACAACATCTTTTATCCA+TGG | - | chr6_1:20601747-20601766 | Msa0879060:intron | 35.0% |
! | ACAACATCTTTTATCCATGG+GGG | - | chr6_1:20601750-20601769 | Msa0879060:intron | 35.0% |
GTGTCCTAATTTGAGAAGAT+TGG | + | chr6_1:20601833-20601852 | None:intergenic | 35.0% | |
TCTCAAATTAGGACACAATG+AGG | - | chr6_1:20601837-20601856 | Msa0879060:intron | 35.0% | |
AATTAGGACACAATGAGGTA+TGG | - | chr6_1:20601842-20601861 | Msa0879060:intron | 35.0% | |
ATCATATACCACAAGTGACA+CGG | - | chr6_1:20601943-20601962 | Msa0879060:intron | 35.0% | |
AATGACAGAGAAATAGAAGG+AGG | - | chr6_1:20601993-20602012 | Msa0879060:CDS | 35.0% | |
!! | ATCATCGAGTTCAAGTTGAA+TGG | - | chr6_1:20602021-20602040 | Msa0879060:intron | 35.0% |
! | TTCTCAGGTGTTTTATGTGA+TGG | - | chr6_1:20602044-20602063 | Msa0879060:intron | 35.0% |
TATTGAGACGAATATTGCGT+TGG | - | chr6_1:20602175-20602194 | Msa0879060:CDS | 35.0% | |
TAAGACTAGACTTGAGTGTT+GGG | - | chr6_1:20602198-20602217 | Msa0879060:intron | 35.0% | |
GAAACTCAGTATAGGTTGTT+TGG | - | chr6_1:20602249-20602268 | Msa0879060:intron | 35.0% | |
! | TGATCGACTCTACTTTCTAT+AGG | + | chr6_1:20602291-20602310 | None:intergenic | 35.0% |
!! | GAGAGTATTGAAATTGGTAG+GGG | - | chr6_1:20602315-20602334 | Msa0879060:intron | 35.0% |
TAAGACAGAGATTATTGGGT+TGG | - | chr6_1:20602374-20602393 | Msa0879060:intron | 35.0% | |
TTATTCCACCAAGTAAGGTT+GGG | + | chr6_1:20602450-20602469 | None:intergenic | 35.0% | |
!! | AAGTCTTATTCCACCAAGTA+AGG | + | chr6_1:20602455-20602474 | None:intergenic | 35.0% |
! | TTACTTGGTGGAATAAGACT+TGG | - | chr6_1:20602454-20602473 | Msa0879060:intron | 35.0% |
GAACAAGCGAGTTAATCAAT+TGG | - | chr6_1:20602566-20602585 | Msa0879060:intron | 35.0% | |
!! | GGTATATCTTTTGGATTAGG+AGG | - | chr6_1:20602669-20602688 | Msa0879060:intron | 35.0% |
! | ATGTTTGGATGGAGGATTTT+TGG | - | chr6_1:20602757-20602776 | Msa0879060:intron | 35.0% |
! | TGTTTGGATGGAGGATTTTT+GGG | - | chr6_1:20602758-20602777 | Msa0879060:intron | 35.0% |
! | ACTTTAAGGGTATGTTTGGA+TGG | + | chr6_1:20602950-20602969 | None:intergenic | 35.0% |
TGACATGAACAAAAATCGGT+TGG | + | chr6_1:20603004-20603023 | None:intergenic | 35.0% | |
TGTCATGTGACTTCTTTGAA+TGG | - | chr6_1:20603019-20603038 | Msa0879060:intron | 35.0% | |
CAGAGAGAAAGACATTTACT+TGG | - | chr6_1:20603173-20603192 | Msa0879060:intron | 35.0% | |
AGACATTTACTTGGAAGTGA+TGG | - | chr6_1:20603182-20603201 | Msa0879060:intron | 35.0% | |
GACATTTACTTGGAAGTGAT+GGG | - | chr6_1:20603183-20603202 | Msa0879060:intron | 35.0% | |
ACATTTACTTGGAAGTGATG+GGG | - | chr6_1:20603184-20603203 | Msa0879060:intron | 35.0% | |
TACTTTCAGAGTTGGAGAAT+CGG | - | chr6_1:20603239-20603258 | Msa0879060:intron | 35.0% | |
TTCCATTCCACGATACTTAT+TGG | - | chr6_1:20603421-20603440 | Msa0879060:intron | 35.0% | |
! | ATCCAATAAGTATCGTGGAA+TGG | + | chr6_1:20603426-20603445 | None:intergenic | 35.0% |
TTGTCCTTTAAACAGGGTAT+TGG | - | chr6_1:20603905-20603924 | Msa0879060:intron | 35.0% | |
TAAGTTACATACCAGGTGAT+TGG | + | chr6_1:20603986-20604005 | None:intergenic | 35.0% | |
! | TCAAAGCTAAAAGGTACAGA+AGG | + | chr6_1:20604232-20604251 | None:intergenic | 35.0% |
TCTTAGCCGTTACTTGTAAA+TGG | + | chr6_1:20604279-20604298 | None:intergenic | 35.0% | |
TTTCATATGCTGTAGTTTCG+GGG | - | chr6_1:20604436-20604455 | Msa0879060:intron | 35.0% | |
! | TCCTAATGGCAACTTCATTT+TGG | - | chr6_1:20604724-20604743 | Msa0879060:CDS | 35.0% |
!! | CTTTTATTTCTCAGTACTGC+TGG | - | chr6_1:20604820-20604839 | Msa0879060:intron | 35.0% |
!! | TTTGGGTAAGGCCTATTTTT+CGG | - | chr6_1:20604845-20604864 | Msa0879060:intron | 35.0% |
ACATCTGCAAACATTGATGA+AGG | + | chr6_1:20604889-20604908 | None:intergenic | 35.0% | |
TTCCCATGTTTCAAATAGCA+TGG | - | chr6_1:20604989-20605008 | Msa0879060:intron | 35.0% | |
! | GTCCATGCTATTTGAAACAT+GGG | + | chr6_1:20604994-20605013 | None:intergenic | 35.0% |
! | TGTCCATGCTATTTGAAACA+TGG | + | chr6_1:20604995-20605014 | None:intergenic | 35.0% |
ACATTCTTCTCAATCTGTAC+AGG | - | chr6_1:20605012-20605031 | Msa0879060:intron | 35.0% | |
CTACTCCTACTTTGATGAAA+TGG | - | chr6_1:20605181-20605200 | Msa0879060:CDS | 35.0% | |
!! | ACTTGGTTTGGTAGTGTTAT+TGG | - | chr6_1:20605403-20605422 | Msa0879060:intron | 35.0% |
TCTAGTATTCCCCAACAAAT+AGG | - | chr6_1:20605508-20605527 | Msa0879060:intron | 35.0% | |
CTAGTATTCCCCAACAAATA+GGG | - | chr6_1:20605509-20605528 | Msa0879060:intron | 35.0% | |
TAGTATTCCCCAACAAATAG+GGG | - | chr6_1:20605510-20605529 | Msa0879060:intron | 35.0% | |
AATTCGGCTAGAAGAGAATA+TGG | - | chr6_1:20605570-20605589 | Msa0879060:intron | 35.0% | |
ATTCGGCTAGAAGAGAATAT+GGG | - | chr6_1:20605571-20605590 | Msa0879060:intron | 35.0% | |
!! | CTCAACTTGCTATAACAGTA+TGG | + | chr6_1:20605641-20605660 | None:intergenic | 35.0% |
CATACTGTTATAGCAAGTTG+AGG | - | chr6_1:20605639-20605658 | Msa0879060:intron | 35.0% | |
!! | GCTTATATGTTGCTATTTCC+TGG | - | chr6_1:20605748-20605767 | Msa0879060:CDS | 35.0% |
TGATTAAATCGGCATATCTC+CGG | - | chr6_1:20605826-20605845 | Msa0879060:intron | 35.0% | |
! | ACAACTATGGGAATCTTTTG+AGG | - | chr6_1:20605855-20605874 | Msa0879060:intron | 35.0% |
!!! | AAGACCTTATTTTCCTCTTG+AGG | - | chr6_1:20605886-20605905 | Msa0879060:CDS | 35.0% |
TTGTCCTCAAGAGGAAAATA+AGG | + | chr6_1:20605893-20605912 | None:intergenic | 35.0% | |
! | TTATTTTCCTCTTGAGGACA+AGG | - | chr6_1:20605892-20605911 | Msa0879060:CDS | 35.0% |
!! | GAGAAGTACTTATAGGTACA+CGG | - | chr6_1:20605928-20605947 | Msa0879060:CDS | 35.0% |
AGAGTAGGTAGTTAGTTACT+GGG | - | chr6_1:20606041-20606060 | Msa0879060:intron | 35.0% | |
GTTAGGAAAAGAGATAACAC+AGG | - | chr6_1:20606074-20606093 | Msa0879060:intron | 35.0% | |
AAAACCATACATTCAGACCT+GGG | + | chr6_1:20606114-20606133 | None:intergenic | 35.0% | |
ACAGAGATGATAGAAGGATA+GGG | + | chr6_1:20606140-20606159 | None:intergenic | 35.0% | |
AACAGAGATGATAGAAGGAT+AGG | + | chr6_1:20606141-20606160 | None:intergenic | 35.0% | |
CGAAAAACAGAGATGATAGA+AGG | + | chr6_1:20606146-20606165 | None:intergenic | 35.0% | |
CCAGTGTATTGTGTATATCT+TGG | + | chr6_1:20606235-20606254 | None:intergenic | 35.0% | |
CCAAGATATACACAATACAC+TGG | - | chr6_1:20606232-20606251 | Msa0879060:intron | 35.0% | |
CAGTTAAGAATCATCATGCA+AGG | + | chr6_1:20606453-20606472 | None:intergenic | 35.0% | |
! | TTAACAGAAAGCATACTAGG+AGG | + | chr6_1:20606711-20606730 | None:intergenic | 35.0% |
TCCTAGTATGCTTTCTGTTA+AGG | - | chr6_1:20606710-20606729 | Msa0879060:intron | 35.0% | |
! | TCCTTAACAGAAAGCATACT+AGG | + | chr6_1:20606714-20606733 | None:intergenic | 35.0% |
AACAGGTATTTGACACGTTA+AGG | - | chr6_1:20606938-20606957 | Msa0879060:intron | 35.0% | |
GTTCATTGGTATTTCTTTGC+TGG | - | chr6_1:20606993-20607012 | Msa0879060:intron | 35.0% | |
! | CTATAAACCGAGGTATTCAA+AGG | - | chr6_1:20607067-20607086 | Msa0879060:intron | 35.0% |
!! | TTTGTTTCTGTTGAAATGGC+AGG | + | chr6_1:20607164-20607183 | None:intergenic | 35.0% |
!! | CCTCTTTGTTTCTGTTGAAA+TGG | + | chr6_1:20607168-20607187 | None:intergenic | 35.0% |
CCATTTCAACAGAAACAAAG+AGG | - | chr6_1:20607165-20607184 | Msa0879060:intron | 35.0% | |
ATTTAAAAGACGTCCCTGAA+AGG | - | chr6_1:20607231-20607250 | Msa0879060:intron | 35.0% | |
GATTACAGATATTCTGGTCA+AGG | - | chr6_1:20607534-20607553 | Msa0879060:intron | 35.0% | |
CTTATCGAAACTGATAGCAT+CGG | + | chr6_1:20607601-20607620 | None:intergenic | 35.0% | |
TCTGCAAATAGACAGAAACT+TGG | + | chr6_1:20607631-20607650 | None:intergenic | 35.0% | |
TATCGATGAGAAATTCTGGT+TGG | - | chr6_1:20607777-20607796 | Msa0879060:intron | 35.0% | |
TTTGTTGCATCTTCATCCAT+AGG | + | chr6_1:20607812-20607831 | None:intergenic | 35.0% | |
!!! | TTATCCTTTTTTCCTTAGGG+GGG | + | chr6_1:20608014-20608033 | None:intergenic | 35.0% |
! | ATAAAGGGTATGCATGATGT+TGG | - | chr6_1:20608129-20608148 | Msa0879060:five_prime_UTR | 35.0% |
!! | GTTGGGTTGAATTGAATCGA+AGG | + | chr6_1:20601162-20601181 | None:intergenic | 40.0% |
!!! | GTTTTGAAACTGGTTTCGCT+TGG | - | chr6_1:20601608-20601627 | Msa0879060:CDS | 40.0% |
! | GGAGCTTTCATCAACCTTTT+TGG | - | chr6_1:20601784-20601803 | Msa0879060:intron | 40.0% |
GGGACCAATCTTCTCAAATT+AGG | - | chr6_1:20601826-20601845 | Msa0879060:intron | 40.0% | |
TCATATACCACAAGTGACAC+GGG | - | chr6_1:20601944-20601963 | Msa0879060:intron | 40.0% | |
!! | GTTCAAGTTGAATGGTTCTC+AGG | - | chr6_1:20602029-20602048 | Msa0879060:intron | 40.0% |
GTTCGCAATGTTGAATGAGA+CGG | - | chr6_1:20602118-20602137 | Msa0879060:CDS | 40.0% | |
GTAAGACTAGACTTGAGTGT+TGG | - | chr6_1:20602197-20602216 | Msa0879060:intron | 40.0% | |
!! | GATGATGGGAAACTCAGTAT+AGG | - | chr6_1:20602241-20602260 | Msa0879060:intron | 40.0% |
GTATAGGTTGTTTGGGCATT+TGG | - | chr6_1:20602257-20602276 | Msa0879060:intron | 40.0% | |
TTGATGTACCCAACCTTACT+TGG | - | chr6_1:20602439-20602458 | Msa0879060:intron | 40.0% | |
CTTATTCCACCAAGTAAGGT+TGG | + | chr6_1:20602451-20602470 | None:intergenic | 40.0% | |
! | GTGGAATAAGACTTGGTTGT+TGG | - | chr6_1:20602461-20602480 | Msa0879060:intron | 40.0% |
! | GAATAAGACTTGGTTGTTGG+TGG | - | chr6_1:20602464-20602483 | Msa0879060:intron | 40.0% |
!! | ATGTTGTGAATAAGGTGCTG+AGG | - | chr6_1:20602648-20602667 | Msa0879060:intron | 40.0% |
!!! | AGGTGCTGAGGTATATCTTT+TGG | - | chr6_1:20602660-20602679 | Msa0879060:intron | 40.0% |
! | ATAAGGGTATGTTTGGATGG+AGG | - | chr6_1:20602749-20602768 | Msa0879060:intron | 40.0% |
!! | ATGGAGGATTTTTGGGAGTA+GGG | - | chr6_1:20602765-20602784 | Msa0879060:intron | 40.0% |
ATGCCTTCGATCAGAAGATT+TGG | + | chr6_1:20603534-20603553 | None:intergenic | 40.0% | |
GCAACCAATACCCTGTTTAA+AGG | + | chr6_1:20603912-20603931 | None:intergenic | 40.0% | |
TCCAAGAACAATGAAAGCTG+TGG | + | chr6_1:20603934-20603953 | None:intergenic | 40.0% | |
TTTGGAAATCACCAATCACC+TGG | - | chr6_1:20603972-20603991 | Msa0879060:intron | 40.0% | |
TATTTCTCTGTCAACTGCTC+TGG | + | chr6_1:20604194-20604213 | None:intergenic | 40.0% | |
!! | GAACTTCTGCTTGCTATATC+AGG | - | chr6_1:20604375-20604394 | Msa0879060:intron | 40.0% |
ACATGACCTCAAACCCATTT+GGG | - | chr6_1:20604398-20604417 | Msa0879060:intron | 40.0% | |
TTCATATGCTGTAGTTTCGG+GGG | - | chr6_1:20604437-20604456 | Msa0879060:intron | 40.0% | |
GTAGCAGACTTACAGTGATT+TGG | + | chr6_1:20604490-20604509 | None:intergenic | 40.0% | |
! | ACACTTTCCATCAAAGGTGT+CGG | + | chr6_1:20604549-20604568 | None:intergenic | 40.0% |
! | ATGTAATCATGTGTCGGTGT+CGG | + | chr6_1:20604600-20604619 | None:intergenic | 40.0% |
!! | TGAACTACTAAGCACTGACA+CGG | + | chr6_1:20604674-20604693 | None:intergenic | 40.0% |
GCCAAAATGAAGTTGCCATT+AGG | + | chr6_1:20604728-20604747 | None:intergenic | 40.0% | |
! | TTACGACTGGCTATGTCTAA+TGG | - | chr6_1:20604760-20604779 | Msa0879060:intron | 40.0% |
! | TTCTCAGTACTGCTGGATTT+TGG | - | chr6_1:20604827-20604846 | Msa0879060:intron | 40.0% |
! | TCTCAGTACTGCTGGATTTT+GGG | - | chr6_1:20604828-20604847 | Msa0879060:intron | 40.0% |
! | CAGATGACTAGGTTGAATGA+AGG | - | chr6_1:20604937-20604956 | Msa0879060:CDS | 40.0% |
TTTATAGCTTCTCCTTGCCA+CGG | - | chr6_1:20605118-20605137 | Msa0879060:intron | 40.0% | |
GGAGTCCATTTCATCAAAGT+AGG | + | chr6_1:20605189-20605208 | None:intergenic | 40.0% | |
! | TTGATGAAATGGACTCCCTT+AGG | - | chr6_1:20605192-20605211 | Msa0879060:CDS | 40.0% |
! | GGTAGTGTTATTGGTAGATG+TGG | - | chr6_1:20605412-20605431 | Msa0879060:intron | 40.0% |
TAGATGTGGCAGTTACGAAA+GGG | - | chr6_1:20605426-20605445 | Msa0879060:intron | 40.0% | |
AGTATTCCCCAACAAATAGG+GGG | - | chr6_1:20605511-20605530 | Msa0879060:intron | 40.0% | |
TTCGGCTAGAAGAGAATATG+GGG | - | chr6_1:20605572-20605591 | Msa0879060:intron | 40.0% | |
! | AGGAAGTATACACACAGACA+TGG | + | chr6_1:20605613-20605632 | None:intergenic | 40.0% |
TGTCTGTGTGTATACTTCCT+AGG | - | chr6_1:20605613-20605632 | Msa0879060:intron | 40.0% | |
GCTATAACAGTATGGTACCT+AGG | + | chr6_1:20605633-20605652 | None:intergenic | 40.0% | |
GACTATTGTCTTGAAGAGCA+AGG | + | chr6_1:20605796-20605815 | None:intergenic | 40.0% | |
! | CAGTGAGCTGCTGATTAAAT+CGG | - | chr6_1:20605815-20605834 | Msa0879060:intron | 40.0% |
! | AGGACAAGGTGAACGTTTTA+TGG | - | chr6_1:20605906-20605925 | Msa0879060:CDS | 40.0% |
!! | CTACGAAAGCATTTGTGAAG+AGG | - | chr6_1:20605954-20605973 | Msa0879060:intron | 40.0% |
CAGAGTAGGTAGTTAGTTAC+TGG | - | chr6_1:20606040-20606059 | Msa0879060:intron | 40.0% | |
TACTGGGAACGAATTCAGTT+AGG | - | chr6_1:20606057-20606076 | Msa0879060:intron | 40.0% | |
CAAAACCATACATTCAGACC+TGG | + | chr6_1:20606115-20606134 | None:intergenic | 40.0% | |
CAGAGATGATAGAAGGATAG+GGG | + | chr6_1:20606139-20606158 | None:intergenic | 40.0% | |
ACGAAGAACGTAAACTCGAT+AGG | - | chr6_1:20606556-20606575 | Msa0879060:intron | 40.0% | |
GGAATGATGTGTGTGTTCAT+TGG | - | chr6_1:20606979-20606998 | Msa0879060:intron | 40.0% | |
AGATATTCTGGTCAAGGCAA+AGG | - | chr6_1:20607540-20607559 | Msa0879060:intron | 40.0% | |
ACTTCTTGTGCACTATCTCT+TGG | - | chr6_1:20607650-20607669 | Msa0879060:intron | 40.0% | |
! | TGTGCACTATCTCTTGGTTT+TGG | - | chr6_1:20607656-20607675 | Msa0879060:intron | 40.0% |
!! | GTGCACTATCTCTTGGTTTT+GGG | - | chr6_1:20607657-20607676 | Msa0879060:intron | 40.0% |
!!! | TGCACTATCTCTTGGTTTTG+GGG | - | chr6_1:20607658-20607677 | Msa0879060:intron | 40.0% |
TCAAGAATGAATGGCTTCAG+AGG | - | chr6_1:20607728-20607747 | Msa0879060:intron | 40.0% | |
TGGTTGGAGCAAAATACCTA+TGG | - | chr6_1:20607793-20607812 | Msa0879060:intron | 40.0% | |
AACAAACACTATCAAGGGCT+AGG | + | chr6_1:20607863-20607882 | None:intergenic | 40.0% | |
! | TGCATGTGGTGTCTGTTTTG+TGG | - | chr6_1:20601726-20601745 | Msa0879060:intron | 45.0% |
! | ATCTTTTATCCATGGGGGAG+TGG | - | chr6_1:20601755-20601774 | Msa0879060:intron | 45.0% |
! | TCTTTTATCCATGGGGGAGT+GGG | - | chr6_1:20601756-20601775 | Msa0879060:intron | 45.0% |
TATGTATATGCACGGTCGCA+CGG | - | chr6_1:20601913-20601932 | Msa0879060:intron | 45.0% | |
!! | TACTTTACCCGTGTCACTTG+TGG | + | chr6_1:20601954-20601973 | None:intergenic | 45.0% |
! | AGTGACACGGGTAAAGTATC+TGG | - | chr6_1:20601956-20601975 | Msa0879060:CDS | 45.0% |
TGTTGAATGAGACGGAGTGT+TGG | - | chr6_1:20602126-20602145 | Msa0879060:CDS | 45.0% | |
! | GTTGAATGAGACGGAGTGTT+GGG | - | chr6_1:20602127-20602146 | Msa0879060:CDS | 45.0% |
!! | ACTAGACTTGAGTGTTGGGA+TGG | - | chr6_1:20602202-20602221 | Msa0879060:intron | 45.0% |
ATGTACCCAACCTTACTTGG+TGG | - | chr6_1:20602442-20602461 | Msa0879060:intron | 45.0% | |
!! | GATGGAGGATTTTTGGGAGT+AGG | - | chr6_1:20602764-20602783 | Msa0879060:intron | 45.0% |
!! | TGGAGGATTTTTGGGAGTAG+GGG | - | chr6_1:20602766-20602785 | Msa0879060:intron | 45.0% |
TCAGAGTTGGAGAATCGGTA+TGG | - | chr6_1:20603244-20603263 | Msa0879060:intron | 45.0% | |
GCACCAAATCTTCTGATCGA+AGG | - | chr6_1:20603528-20603547 | Msa0879060:intron | 45.0% | |
! | GTATTCACATGTGTCGGTGT+CGG | + | chr6_1:20603577-20603596 | None:intergenic | 45.0% |
!! | TCAAGCACTGACACGAACAT+CGG | + | chr6_1:20603655-20603674 | None:intergenic | 45.0% |
GCGGAGGAAATAGAAGACAT+AGG | + | chr6_1:20603705-20603724 | None:intergenic | 45.0% | |
AAAGCTGCAAGAAGTGACTG+CGG | + | chr6_1:20603724-20603743 | None:intergenic | 45.0% | |
CAGTCACTTCTTGCAGCTTT+GGG | - | chr6_1:20603724-20603743 | Msa0879060:intron | 45.0% | |
ACACAAAGTAAGCGAATGCG+AGG | + | chr6_1:20603771-20603790 | None:intergenic | 45.0% | |
GCCACAGCTTTCATTGTTCT+TGG | - | chr6_1:20603930-20603949 | Msa0879060:intron | 45.0% | |
AAATGTGAAATGTGCAGGCG+AGG | - | chr6_1:20604351-20604370 | Msa0879060:CDS | 45.0% | |
GACATGACCTCAAACCCATT+TGG | - | chr6_1:20604397-20604416 | Msa0879060:intron | 45.0% | |
CATGACCTCAAACCCATTTG+GGG | - | chr6_1:20604399-20604418 | Msa0879060:intron | 45.0% | |
GGCAATAGCATACCCCAAAT+GGG | + | chr6_1:20604414-20604433 | None:intergenic | 45.0% | |
!! | CCTTTGATGGAAAGTGTCTC+CGG | - | chr6_1:20604552-20604571 | Msa0879060:intron | 45.0% |
TTACGGATGTGTCAGTGTCT+TGG | - | chr6_1:20604645-20604664 | Msa0879060:intron | 45.0% | |
! | CAGTTCTAACCTCTTACGAC+TGG | - | chr6_1:20604747-20604766 | Msa0879060:CDS | 45.0% |
TAGACATAGCCAGTCGTAAG+AGG | + | chr6_1:20604759-20604778 | None:intergenic | 45.0% | |
!! | GTACTGCTGGATTTTGGGTA+AGG | - | chr6_1:20604833-20604852 | Msa0879060:intron | 45.0% |
TTAACTTCTTCGAGTGTCCG+TGG | + | chr6_1:20605138-20605157 | None:intergenic | 45.0% | |
GTAGATGTGGCAGTTACGAA+AGG | - | chr6_1:20605425-20605444 | Msa0879060:intron | 45.0% | |
!! | TACGAAAGGGTGGTGTTGTT+TGG | - | chr6_1:20605439-20605458 | Msa0879060:intron | 45.0% |
ACTAGATCGCTGCTAATGAC+AGG | + | chr6_1:20605494-20605513 | None:intergenic | 45.0% | |
TTGCTGACCCCCTATTTGTT+GGG | + | chr6_1:20605521-20605540 | None:intergenic | 45.0% | |
TTTGCTGACCCCCTATTTGT+TGG | + | chr6_1:20605522-20605541 | None:intergenic | 45.0% | |
AAATAGGGGGTCAGCAAAGT+AGG | - | chr6_1:20605524-20605543 | Msa0879060:intron | 45.0% | |
! | CAAGTTGAGGTAGCAATCGT+TGG | - | chr6_1:20605652-20605671 | Msa0879060:intron | 45.0% |
TAGCAATCGTTGGCACATTC+AGG | - | chr6_1:20605662-20605681 | Msa0879060:intron | 45.0% | |
TTGGCACATTCAGGAATGAG+AGG | - | chr6_1:20605671-20605690 | Msa0879060:intron | 45.0% | |
AGGATGTCTTCCAATTCCGT+CGG | + | chr6_1:20605776-20605795 | None:intergenic | 45.0% | |
TTCCCATAGTTGTCACAGTC+CGG | + | chr6_1:20605848-20605867 | None:intergenic | 45.0% | |
AATAGGGGGTTTAGCAGAGT+AGG | - | chr6_1:20606026-20606045 | Msa0879060:intron | 45.0% | |
TTAGGGATGCAAATGGGACA+CGG | - | chr6_1:20606407-20606426 | Msa0879060:intron | 45.0% | |
! | GAAAGCATACTAGGAGGTTC+CGG | + | chr6_1:20606705-20606724 | None:intergenic | 45.0% |
CTGGCACCTGATGAATCAAA+AGG | - | chr6_1:20607012-20607031 | Msa0879060:intron | 45.0% | |
TGAAATGGCAGGAGACACTA+CGG | + | chr6_1:20607153-20607172 | None:intergenic | 45.0% | |
! | GTCTTTGCTGTGTGCTTCTT+CGG | + | chr6_1:20607482-20607501 | None:intergenic | 45.0% |
! | AGACGCGAGATCTTTTGTCA+AGG | - | chr6_1:20607498-20607517 | Msa0879060:five_prime_UTR | 45.0% |
! | GACGCGAGATCTTTTGTCAA+GGG | - | chr6_1:20607499-20607518 | Msa0879060:five_prime_UTR | 45.0% |
!!! | ACTATCTCTTGGTTTTGGGG+AGG | - | chr6_1:20607661-20607680 | Msa0879060:intron | 45.0% |
ATGAATGGCTTCAGAGGCAA+TGG | - | chr6_1:20607734-20607753 | Msa0879060:intron | 45.0% | |
AAACACTATCAAGGGCTAGG+AGG | + | chr6_1:20607860-20607879 | None:intergenic | 45.0% | |
! | TGTTTGTTAGTCATCGCCGT+AGG | - | chr6_1:20607875-20607894 | Msa0879060:intron | 45.0% |
CGAAAACCTGGGAAATCCTA+CGG | + | chr6_1:20607894-20607913 | None:intergenic | 45.0% | |
TTCATGATTCTTCCCCCCTA+AGG | - | chr6_1:20607999-20608018 | Msa0879060:five_prime_UTR | 45.0% | |
TCTTCCCCCCTAAGGAAAAA+AGG | - | chr6_1:20608007-20608026 | Msa0879060:five_prime_UTR | 45.0% | |
!!! | TTAATTTTTCAAATTTTTTA+CGG | - | chr6_1:20604628-20604647 | Msa0879060:intron | 5.0% |
!! | GATTTTTGGGAGTAGGGGAG+AGG | - | chr6_1:20602771-20602790 | Msa0879060:intron | 50.0% |
! | CTTGGAAGTGATGGGGTACA+TGG | - | chr6_1:20603191-20603210 | Msa0879060:intron | 50.0% |
TTCCTTTGGCTATGCTGCTC+AGG | - | chr6_1:20603393-20603412 | Msa0879060:intron | 50.0% | |
TACCTGAGCAGCATAGCCAA+AGG | + | chr6_1:20603398-20603417 | None:intergenic | 50.0% | |
ACTGACACGAACATCGGACA+CGG | + | chr6_1:20603649-20603668 | None:intergenic | 50.0% | |
GCAGTCACTTCTTGCAGCTT+TGG | - | chr6_1:20603723-20603742 | Msa0879060:intron | 50.0% | |
GTACAGAAGGAACGCGACAT+TGG | + | chr6_1:20604219-20604238 | None:intergenic | 50.0% | |
! | GCATACCCCAAATGGGTTTG+AGG | + | chr6_1:20604407-20604426 | None:intergenic | 50.0% |
CGGCAATAGCATACCCCAAA+TGG | + | chr6_1:20604415-20604434 | None:intergenic | 50.0% | |
CCGGAGACACTTTCCATCAA+AGG | + | chr6_1:20604555-20604574 | None:intergenic | 50.0% | |
ATGTGGCAGTTACGAAAGGG+TGG | - | chr6_1:20605429-20605448 | Msa0879060:intron | 50.0% | |
! | TGCTGACCCCCTATTTGTTG+GGG | + | chr6_1:20605520-20605539 | None:intergenic | 50.0% |
!! | TCCATTAGAGGTGCTAGCGA+AGG | - | chr6_1:20605714-20605733 | Msa0879060:intron | 50.0% |
ACCTTCGCTAGCACCTCTAA+TGG | + | chr6_1:20605718-20605737 | None:intergenic | 50.0% | |
!! | TTAGAGGTGCTAGCGAAGGT+AGG | - | chr6_1:20605718-20605737 | Msa0879060:intron | 50.0% |
TGCTAGCGAAGGTAGGATCA+GGG | - | chr6_1:20605725-20605744 | Msa0879060:CDS | 50.0% | |
!! | TTGCTATTTCCTGGGACCGA+CGG | - | chr6_1:20605757-20605776 | Msa0879060:CDS | 50.0% |
TCTCCGGACTGTGACAACTA+TGG | - | chr6_1:20605842-20605861 | Msa0879060:intron | 50.0% | |
CTCCGGACTGTGACAACTAT+GGG | - | chr6_1:20605843-20605862 | Msa0879060:intron | 50.0% | |
ACGTTCACCTTGTCCTCAAG+AGG | + | chr6_1:20605902-20605921 | None:intergenic | 50.0% | |
TCAGACCTGGGCGAATTCAT+GGG | + | chr6_1:20606102-20606121 | None:intergenic | 50.0% | |
TTCAGACCTGGGCGAATTCA+TGG | + | chr6_1:20606103-20606122 | None:intergenic | 50.0% | |
TTCGCCCAGGTCTGAATGTA+TGG | - | chr6_1:20606107-20606126 | Msa0879060:intron | 50.0% | |
GCAAATGGGACACGGCAATA+TGG | - | chr6_1:20606415-20606434 | Msa0879060:intron | 50.0% | |
AACTTGACTGCATGCCTGCT+AGG | - | chr6_1:20606618-20606637 | Msa0879060:intron | 50.0% | |
! | TCAGAGGCAATGGACTCGAA+CGG | - | chr6_1:20607744-20607763 | Msa0879060:intron | 50.0% |
!! | TTTTGGGAGTAGGGGAGAGG+AGG | - | chr6_1:20602774-20602793 | Msa0879060:intron | 55.0% |
GCTGTAGTTTCGGGGGCTAT+AGG | - | chr6_1:20604444-20604463 | Msa0879060:intron | 55.0% | |
!! | CAAAGGTGTCGGTGCTGCAA+AGG | + | chr6_1:20604538-20604557 | None:intergenic | 55.0% |
!! | TGCAGCACCGACACCTTTGA+TGG | - | chr6_1:20604539-20604558 | Msa0879060:intron | 55.0% |
ATGGCTATCAGCTGCACAGC+TGG | - | chr6_1:20604779-20604798 | Msa0879060:intron | 55.0% | |
TTCTTCGAGTGTCCGTGGCA+AGG | + | chr6_1:20605133-20605152 | None:intergenic | 55.0% | |
AGGGGGTCAGCAAAGTAGGT+TGG | - | chr6_1:20605528-20605547 | Msa0879060:intron | 55.0% | |
GGGGGTCAGCAAAGTAGGTT+GGG | - | chr6_1:20605529-20605548 | Msa0879060:intron | 55.0% | |
! | GGTCAGCAAAGTAGGTTGGG+AGG | - | chr6_1:20605532-20605551 | Msa0879060:intron | 55.0% |
GTGCTAGCGAAGGTAGGATC+AGG | - | chr6_1:20605724-20605743 | Msa0879060:CDS | 55.0% | |
GCTAGCGAAGGTAGGATCAG+GGG | - | chr6_1:20605726-20605745 | Msa0879060:CDS | 55.0% | |
TTTCCTGGGACCGACGGAAT+TGG | - | chr6_1:20605763-20605782 | Msa0879060:CDS | 55.0% | |
TGCCTGCTAGGTGAGGTATG+CGG | - | chr6_1:20606630-20606649 | Msa0879060:intron | 55.0% | |
GCATACTAGGAGGTTCCGGA+AGG | + | chr6_1:20606701-20606720 | None:intergenic | 55.0% | |
TCATCGCCGTAGGATTTCCC+AGG | - | chr6_1:20607885-20607904 | Msa0879060:intron | 55.0% | |
!! | TCCATGGGGGAGTGGGTTGT+TGG | - | chr6_1:20601763-20601782 | Msa0879060:intron | 60.0% |
TCCAACAACCCACTCCCCCA+TGG | + | chr6_1:20601767-20601786 | None:intergenic | 60.0% | |
GCTGCAAGAAGTGACTGCGG+AGG | + | chr6_1:20603721-20603740 | None:intergenic | 60.0% | |
!! | TCGGTGTCGTGTAGACGCGT+CGG | + | chr6_1:20604581-20604600 | None:intergenic | 60.0% |
CTTCCAATTCCGTCGGTCCC+AGG | + | chr6_1:20605769-20605788 | None:intergenic | 60.0% | |
AGGTGCCCATGAATTCGCCC+AGG | - | chr6_1:20606094-20606113 | Msa0879060:intron | 60.0% | |
GACTGCATGCCTGCTAGGTG+AGG | - | chr6_1:20606623-20606642 | Msa0879060:intron | 60.0% | |
AGCCGCATACCTCACCTAGC+AGG | + | chr6_1:20606635-20606654 | None:intergenic | 60.0% | |
CGTGTAGACGCGTCGGACAC+CGG | + | chr6_1:20604574-20604593 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_1 | gene | 20600989 | 20608153 | 20600989 | ID=Msa0879060;Name=Msa0879060 |
chr6_1 | mRNA | 20600989 | 20608153 | 20600989 | ID=Msa0879060-mRNA-1;Parent=Msa0879060;Name=Msa0879060-mRNA-1;_AED=0.08;_eAED=0.08;_QI=410|0.84|0.78|1|0.92|0.85|14|282|418 |
chr6_1 | exon | 20600989 | 20601492 | 20600989 | ID=Msa0879060-mRNA-1:exon:5633;Parent=Msa0879060-mRNA-1 |
chr6_1 | exon | 20601581 | 20601677 | 20601581 | ID=Msa0879060-mRNA-1:exon:5632;Parent=Msa0879060-mRNA-1 |
chr6_1 | exon | 20601956 | 20602022 | 20601956 | ID=Msa0879060-mRNA-1:exon:5631;Parent=Msa0879060-mRNA-1 |
chr6_1 | exon | 20602109 | 20602199 | 20602109 | ID=Msa0879060-mRNA-1:exon:5630;Parent=Msa0879060-mRNA-1 |
chr6_1 | exon | 20604083 | 20604202 | 20604083 | ID=Msa0879060-mRNA-1:exon:5629;Parent=Msa0879060-mRNA-1 |
chr6_1 | exon | 20604293 | 20604392 | 20604293 | ID=Msa0879060-mRNA-1:exon:5628;Parent=Msa0879060-mRNA-1 |
chr6_1 | exon | 20604709 | 20604774 | 20604709 | ID=Msa0879060-mRNA-1:exon:5627;Parent=Msa0879060-mRNA-1 |
chr6_1 | exon | 20604857 | 20604959 | 20604857 | ID=Msa0879060-mRNA-1:exon:5626;Parent=Msa0879060-mRNA-1 |
chr6_1 | exon | 20605149 | 20605222 | 20605149 | ID=Msa0879060-mRNA-1:exon:5625;Parent=Msa0879060-mRNA-1 |
chr6_1 | exon | 20605330 | 20605402 | 20605330 | ID=Msa0879060-mRNA-1:exon:5624;Parent=Msa0879060-mRNA-1 |
chr6_1 | exon | 20605724 | 20605789 | 20605724 | ID=Msa0879060-mRNA-1:exon:5623;Parent=Msa0879060-mRNA-1 |
chr6_1 | exon | 20605882 | 20605966 | 20605882 | ID=Msa0879060-mRNA-1:exon:5622;Parent=Msa0879060-mRNA-1 |
chr6_1 | exon | 20607284 | 20607552 | 20607284 | ID=Msa0879060-mRNA-1:exon:5621;Parent=Msa0879060-mRNA-1 |
chr6_1 | exon | 20607920 | 20608153 | 20607920 | ID=Msa0879060-mRNA-1:exon:5620;Parent=Msa0879060-mRNA-1 |
chr6_1 | five_prime_UTR | 20607920 | 20608153 | 20607920 | ID=Msa0879060-mRNA-1:five_prime_utr;Parent=Msa0879060-mRNA-1 |
chr6_1 | five_prime_UTR | 20607377 | 20607552 | 20607377 | ID=Msa0879060-mRNA-1:five_prime_utr;Parent=Msa0879060-mRNA-1 |
chr6_1 | CDS | 20607284 | 20607376 | 20607284 | ID=Msa0879060-mRNA-1:cds;Parent=Msa0879060-mRNA-1 |
chr6_1 | CDS | 20605882 | 20605966 | 20605882 | ID=Msa0879060-mRNA-1:cds;Parent=Msa0879060-mRNA-1 |
chr6_1 | CDS | 20605724 | 20605789 | 20605724 | ID=Msa0879060-mRNA-1:cds;Parent=Msa0879060-mRNA-1 |
chr6_1 | CDS | 20605330 | 20605402 | 20605330 | ID=Msa0879060-mRNA-1:cds;Parent=Msa0879060-mRNA-1 |
chr6_1 | CDS | 20605149 | 20605222 | 20605149 | ID=Msa0879060-mRNA-1:cds;Parent=Msa0879060-mRNA-1 |
chr6_1 | CDS | 20604857 | 20604959 | 20604857 | ID=Msa0879060-mRNA-1:cds;Parent=Msa0879060-mRNA-1 |
chr6_1 | CDS | 20604709 | 20604774 | 20604709 | ID=Msa0879060-mRNA-1:cds;Parent=Msa0879060-mRNA-1 |
chr6_1 | CDS | 20604293 | 20604392 | 20604293 | ID=Msa0879060-mRNA-1:cds;Parent=Msa0879060-mRNA-1 |
chr6_1 | CDS | 20604083 | 20604202 | 20604083 | ID=Msa0879060-mRNA-1:cds;Parent=Msa0879060-mRNA-1 |
chr6_1 | CDS | 20602109 | 20602199 | 20602109 | ID=Msa0879060-mRNA-1:cds;Parent=Msa0879060-mRNA-1 |
chr6_1 | CDS | 20601956 | 20602022 | 20601956 | ID=Msa0879060-mRNA-1:cds;Parent=Msa0879060-mRNA-1 |
chr6_1 | CDS | 20601581 | 20601677 | 20601581 | ID=Msa0879060-mRNA-1:cds;Parent=Msa0879060-mRNA-1 |
chr6_1 | CDS | 20601271 | 20601492 | 20601271 | ID=Msa0879060-mRNA-1:cds;Parent=Msa0879060-mRNA-1 |
chr6_1 | three_prime_UTR | 20600989 | 20601270 | 20600989 | ID=Msa0879060-mRNA-1:three_prime_utr;Parent=Msa0879060-mRNA-1 |
Gene Sequence |
Protein sequence |