Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543660 | ACJ83285.1 | 96.753 | 154 | 5 | 0 | 1 | 154 | 1 | 154 | 2.22e-104 | 308 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543660 | sp|A0A067XRK9|XTH6_DIOKA | 84.733 | 131 | 20 | 0 | 24 | 154 | 30 | 160 | 7.92e-81 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543660 | B7FF95 | 96.753 | 154 | 5 | 0 | 1 | 154 | 1 | 154 | 1.06e-104 | 308 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0543660 | 0.806941 | 6.440302e-50 | -8.615850e-47 |
| Msa0005890 | Msa0543660 | 0.820288 | 7.424043e-53 | -8.615850e-47 |
| Msa0018160 | Msa0543660 | 0.824807 | 6.607136e-54 | -8.615850e-47 |
| Msa0019900 | Msa0543660 | 0.808585 | 2.880918e-50 | -8.615850e-47 |
| Msa0025160 | Msa0543660 | 0.813392 | 2.620419e-51 | -8.615850e-47 |
| Msa0025580 | Msa0543660 | 0.814528 | 1.471846e-51 | -8.615850e-47 |
| Msa0027280 | Msa0543660 | 0.822565 | 2.212952e-53 | -8.615850e-47 |
| Msa0029970 | Msa0543660 | 0.802515 | 5.409336e-49 | -8.615850e-47 |
| Msa0032460 | Msa0543660 | 0.816736 | 4.742148e-52 | -8.615850e-47 |
| Msa0036870 | Msa0543660 | 0.817411 | 3.344273e-52 | -8.615850e-47 |
| Msa0050660 | Msa0543660 | 0.813920 | 2.004691e-51 | -8.615850e-47 |
| Msa0050700 | Msa0543660 | 0.814154 | 1.780148e-51 | -8.615850e-47 |
| Msa0050790 | Msa0543660 | 0.819818 | 9.512540e-53 | -8.615850e-47 |
| Msa0052260 | Msa0543660 | 0.803002 | 4.291222e-49 | -8.615850e-47 |
| Msa0054690 | Msa0543660 | 0.841734 | 3.969934e-58 | -8.615850e-47 |
| Msa0071850 | Msa0543660 | 0.833603 | 4.850351e-56 | -8.615850e-47 |
| Msa0071860 | Msa0543660 | 0.841436 | 4.758329e-58 | -8.615850e-47 |
| Msa0073120 | Msa0543660 | 0.815319 | 9.825798e-52 | -8.615850e-47 |
| Msa0090400 | Msa0543660 | 0.811873 | 5.631039e-51 | -8.615850e-47 |
| Msa0108880 | Msa0543660 | 0.810363 | 1.196569e-50 | -8.615850e-47 |
| Msa0117480 | Msa0543660 | 0.809272 | 2.053600e-50 | -8.615850e-47 |
| Msa0121330 | Msa0543660 | 0.801465 | 8.889022e-49 | -8.615850e-47 |
| Msa0125210 | Msa0543660 | 0.819878 | 9.217594e-53 | -8.615850e-47 |
| Msa0128310 | Msa0543660 | 0.811967 | 5.370480e-51 | -8.615850e-47 |
| Msa0136650 | Msa0543660 | 0.813485 | 2.499380e-51 | -8.615850e-47 |
| Msa0140280 | Msa0543660 | 0.812828 | 3.483957e-51 | -8.615850e-47 |
| Msa0146040 | Msa0543660 | 0.825741 | 3.972394e-54 | -8.615850e-47 |
| Msa0149350 | Msa0543660 | 0.816539 | 5.249417e-52 | -8.615850e-47 |
| Msa0158860 | Msa0543660 | 0.828735 | 7.621368e-55 | -8.615850e-47 |
| Msa0174440 | Msa0543660 | 0.804143 | 2.488101e-49 | -8.615850e-47 |
| Msa0180650 | Msa0543660 | 0.804966 | 1.676177e-49 | -8.615850e-47 |
| Msa0188610 | Msa0543660 | 0.829813 | 4.171867e-55 | -8.615850e-47 |
| Msa0190570 | Msa0543660 | 0.812544 | 4.019553e-51 | -8.615850e-47 |
| Msa0213030 | Msa0543660 | 0.803372 | 3.597949e-49 | -8.615850e-47 |
| Msa0225860 | Msa0543660 | 0.806707 | 7.216192e-50 | -8.615850e-47 |
| Msa0230800 | Msa0543660 | 0.824587 | 7.444642e-54 | -8.615850e-47 |
| Msa0230870 | Msa0543660 | 0.806337 | 8.637728e-50 | -8.615850e-47 |
| Msa0369790 | Msa0543660 | 0.828500 | 8.683287e-55 | -8.615850e-47 |
| Msa0371480 | Msa0543660 | 0.836856 | 7.320602e-57 | -8.615850e-47 |
| Msa0380620 | Msa0543660 | 0.826858 | 2.153253e-54 | -8.615850e-47 |
| Msa0380670 | Msa0543660 | 0.816646 | 4.967103e-52 | -8.615850e-47 |
| Msa0418970 | Msa0543660 | 0.806532 | 7.857567e-50 | -8.615850e-47 |
| Msa0419700 | Msa0543660 | 0.863582 | 2.246437e-64 | -8.615850e-47 |
| Msa0430260 | Msa0543660 | 0.808502 | 3.000582e-50 | -8.615850e-47 |
| Msa0430300 | Msa0543660 | 0.818710 | 1.700824e-52 | -8.615850e-47 |
| Msa0435210 | Msa0543660 | 0.832986 | 6.911286e-56 | -8.615850e-47 |
| Msa0447750 | Msa0543660 | 0.812472 | 4.166827e-51 | -8.615850e-47 |
| Msa0450160 | Msa0543660 | 0.857952 | 1.149428e-62 | -8.615850e-47 |
| Msa0464000 | Msa0543660 | 0.831213 | 1.895653e-55 | -8.615850e-47 |
| Msa0472950 | Msa0543660 | 0.810486 | 1.125395e-50 | -8.615850e-47 |
| Msa0479320 | Msa0543660 | 0.815661 | 8.244062e-52 | -8.615850e-47 |
| Msa0244640 | Msa0543660 | 0.807580 | 4.716476e-50 | -8.615850e-47 |
| Msa0270340 | Msa0543660 | 0.820060 | 8.374728e-53 | -8.615850e-47 |
| Msa0292160 | Msa0543660 | 0.815467 | 9.110306e-52 | -8.615850e-47 |
| Msa0298470 | Msa0543660 | 0.809763 | 1.610860e-50 | -8.615850e-47 |
| Msa0359020 | Msa0543660 | 0.839330 | 1.690550e-57 | -8.615850e-47 |
| Msa0509550 | Msa0543660 | 0.819996 | 8.659165e-53 | -8.615850e-47 |
| Msa0511750 | Msa0543660 | 0.861461 | 1.009622e-63 | -8.615850e-47 |
| Msa0528570 | Msa0543660 | 0.857476 | 1.590798e-62 | -8.615850e-47 |
| Msa0530780 | Msa0543660 | 0.805498 | 1.296605e-49 | -8.615850e-47 |
| Msa0541300 | Msa0543660 | 0.850056 | 2.172969e-60 | -8.615850e-47 |
| Msa0541310 | Msa0543660 | 0.846664 | 1.884169e-59 | -8.615850e-47 |
| Msa0543660 | Msa0548470 | 0.857017 | 2.173303e-62 | -8.615850e-47 |
| Msa0543660 | Msa0557460 | 0.859675 | 3.510615e-63 | -8.615850e-47 |
| Msa0543660 | Msa0567170 | 0.831069 | 2.057015e-55 | -8.615850e-47 |
| Msa0543660 | Msa0580370 | 0.830165 | 3.423355e-55 | -8.615850e-47 |
| Msa0543660 | Msa0584420 | 0.972937 | 1.374160e-135 | -8.615850e-47 |
| Msa0543660 | Msa0585020 | 0.862033 | 6.749550e-64 | -8.615850e-47 |
| Msa0543660 | Msa0587620 | 0.825335 | 4.957550e-54 | -8.615850e-47 |
| Msa0543660 | Msa0597270 | 0.854466 | 1.208528e-61 | -8.615850e-47 |
| Msa0543660 | Msa0600930 | 0.804992 | 1.654761e-49 | -8.615850e-47 |
| Msa0543660 | Msa0616210 | 0.815951 | 7.106370e-52 | -8.615850e-47 |
| Msa0543660 | Msa0640200 | 0.948868 | 4.010041e-107 | -8.615850e-47 |
| Msa0543660 | Msa0644410 | 0.825387 | 4.820199e-54 | -8.615850e-47 |
| Msa0543660 | Msa0658640 | 0.831584 | 1.536841e-55 | -8.615850e-47 |
| Msa0543660 | Msa0661150 | 0.842283 | 2.842036e-58 | -8.615850e-47 |
| Msa0543660 | Msa0666700 | 0.809526 | 1.811750e-50 | -8.615850e-47 |
| Msa0543660 | Msa0675330 | 0.856905 | 2.344646e-62 | -8.615850e-47 |
| Msa0543660 | Msa0678490 | 0.965304 | 1.971007e-124 | -8.615850e-47 |
| Msa0543660 | Msa0693890 | 0.805602 | 1.233325e-49 | -8.615850e-47 |
| Msa0543660 | Msa0699540 | 0.816893 | 4.373627e-52 | -8.615850e-47 |
| Msa0543660 | Msa0700460 | 0.845531 | 3.832161e-59 | -8.615850e-47 |
| Msa0543660 | Msa0703600 | 0.824716 | 6.940844e-54 | -8.615850e-47 |
| Msa0543660 | Msa0709200 | 0.821581 | 3.741091e-53 | -8.615850e-47 |
| Msa0543660 | Msa0713960 | 0.800655 | 1.301585e-48 | -8.615850e-47 |
| Msa0543660 | Msa0725770 | 0.802291 | 6.013882e-49 | -8.615850e-47 |
| Msa0543660 | Msa0735780 | 0.823597 | 1.271234e-53 | -8.615850e-47 |
| Msa0543660 | Msa0738700 | 0.844575 | 6.945171e-59 | -8.615850e-47 |
| Msa0543660 | Msa0741220 | 0.809176 | 2.153935e-50 | -8.615850e-47 |
| Msa0543660 | Msa0761670 | 0.824432 | 8.098148e-54 | -8.615850e-47 |
| Msa0543660 | Msa0795870 | 0.834601 | 2.727674e-56 | -8.615850e-47 |
| Msa0543660 | Msa0819170 | 0.813801 | 2.129958e-51 | -8.615850e-47 |
| Msa0543660 | Msa0833650 | 0.832276 | 1.036657e-55 | -8.615850e-47 |
| Msa0543660 | Msa0859290 | 0.848462 | 6.037021e-60 | -8.615850e-47 |
| Msa0543660 | Msa0894790 | 0.805545 | 1.267590e-49 | -8.615850e-47 |
| Msa0543660 | Msa0921590 | 0.803694 | 3.084405e-49 | -8.615850e-47 |
| Msa0543660 | Msa0974520 | 0.806453 | 8.164917e-50 | -8.615850e-47 |
| Msa0543660 | Msa1029800 | 0.825737 | 3.980763e-54 | -8.615850e-47 |
| Msa0543660 | Msa1042160 | 0.849147 | 3.897604e-60 | -8.615850e-47 |
| Msa0543660 | Msa1042190 | 0.855554 | 5.837890e-62 | -8.615850e-47 |
| Msa0543660 | Msa1068920 | 0.808074 | 3.702485e-50 | -8.615850e-47 |
| Msa0543660 | Msa1080000 | 0.807952 | 3.930623e-50 | -8.615850e-47 |
| Msa0543660 | Msa1081690 | 0.804557 | 2.040614e-49 | -8.615850e-47 |
| Msa0543660 | Msa1082200 | 0.804987 | 1.659285e-49 | -8.615850e-47 |
| Msa0543660 | Msa1105780 | 0.810693 | 1.015112e-50 | -8.615850e-47 |
| Msa0543660 | Msa1116660 | 0.803072 | 4.150964e-49 | -8.615850e-47 |
| Msa0543660 | Msa1117920 | 0.800978 | 1.118085e-48 | -8.615850e-47 |
| Msa0543660 | Msa1132530 | 0.818030 | 2.425093e-52 | -8.615850e-47 |
| Msa0543660 | Msa1132840 | 0.824880 | 6.350099e-54 | -8.615850e-47 |
| Msa0543660 | Msa1161680 | 0.804139 | 2.493566e-49 | -8.615850e-47 |
| Msa0543660 | Msa1167470 | 0.846400 | 2.224076e-59 | -8.615850e-47 |
| Msa0543660 | Msa1187760 | 0.806466 | 8.113398e-50 | -8.615850e-47 |
| Msa0543660 | Msa1226520 | 0.835152 | 1.981212e-56 | -8.615850e-47 |
| Msa0543660 | Msa1240260 | 0.815471 | 9.091543e-52 | -8.615850e-47 |
| Msa0543660 | Msa1240770 | 0.824969 | 6.050305e-54 | -8.615850e-47 |
| Msa0543660 | Msa1268630 | 0.833177 | 6.196119e-56 | -8.615850e-47 |
| Msa0543660 | Msa1277640 | 0.813583 | 2.377807e-51 | -8.615850e-47 |
| Msa0543660 | Msa1315160 | 0.815006 | 1.152824e-51 | -8.615850e-47 |
| Msa0543660 | Msa1316330 | 0.813973 | 1.951326e-51 | -8.615850e-47 |
| Msa0543660 | Msa1321340 | 0.805919 | 1.057848e-49 | -8.615850e-47 |
| Msa0543660 | Msa1343170 | 0.803952 | 2.726688e-49 | -8.615850e-47 |
| Msa0543660 | Msa1343180 | 0.824039 | 1.001865e-53 | -8.615850e-47 |
| Msa0543660 | Msa1359690 | 0.838009 | 3.709538e-57 | -8.615850e-47 |
| Msa0543660 | Msa1372040 | 0.804258 | 2.354450e-49 | -8.615850e-47 |
| Msa0543660 | Msa1384460 | 0.822828 | 1.922253e-53 | -8.615850e-47 |
| Msa0543660 | Msa1392580 | 0.803976 | 2.695306e-49 | -8.615850e-47 |
| Msa0543660 | Msa1395190 | 0.802727 | 4.891084e-49 | -8.615850e-47 |
| Msa0543660 | Msa1400010 | 0.810890 | 9.205987e-51 | -8.615850e-47 |
| Msa0543660 | Msa1409410 | 0.829769 | 4.275553e-55 | -8.615850e-47 |
| Msa0543660 | Msa1415540 | 0.846638 | 1.915779e-59 | -8.615850e-47 |
| Msa0543660 | Msa1437930 | 0.808006 | 3.829203e-50 | -8.615850e-47 |
| Msa0543660 | Msa1440630 | 0.820295 | 7.395920e-53 | -8.615850e-47 |
| Msa0543660 | Msa1454140 | 0.809262 | 2.064127e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543660 | MtrunA17_Chr4g0023961 | 96.753 | 154 | 5 | 0 | 1 | 154 | 1 | 154 | 8.27e-108 | 308 |
| Msa0543660 | MtrunA17_Chr2g0323161 | 81.579 | 152 | 27 | 1 | 3 | 154 | 2 | 152 | 4.15e-90 | 264 |
| Msa0543660 | MtrunA17_Chr4g0054431 | 52.667 | 150 | 68 | 2 | 8 | 154 | 13 | 162 | 8.48e-53 | 169 |
| Msa0543660 | MtrunA17_Chr7g0252601 | 51.282 | 156 | 68 | 2 | 7 | 154 | 6 | 161 | 3.99e-52 | 167 |
| Msa0543660 | MtrunA17_Chr4g0054451 | 52.632 | 152 | 67 | 3 | 8 | 154 | 13 | 164 | 6.15e-52 | 167 |
| Msa0543660 | MtrunA17_Chr3g0122021 | 53.103 | 145 | 64 | 2 | 13 | 154 | 14 | 157 | 1.79e-51 | 165 |
| Msa0543660 | MtrunA17_Chr3g0122031 | 53.103 | 145 | 64 | 2 | 13 | 154 | 14 | 157 | 1.97e-51 | 165 |
| Msa0543660 | MtrunA17_Chr7g0252621 | 51.282 | 156 | 68 | 2 | 7 | 154 | 6 | 161 | 2.48e-51 | 165 |
| Msa0543660 | MtrunA17_Chr7g0252631 | 51.282 | 156 | 68 | 2 | 7 | 154 | 6 | 161 | 3.22e-51 | 165 |
| Msa0543660 | MtrunA17_Chr4g0071341 | 54.348 | 138 | 61 | 1 | 19 | 154 | 17 | 154 | 3.87e-50 | 162 |
| Msa0543660 | MtrunA17_Chr8g0377841 | 50.340 | 147 | 70 | 2 | 11 | 154 | 14 | 160 | 4.88e-50 | 161 |
| Msa0543660 | MtrunA17_Chr8g0389641 | 53.147 | 143 | 63 | 2 | 15 | 154 | 17 | 158 | 5.66e-50 | 160 |
| Msa0543660 | MtrunA17_Chr7g0258911 | 52.414 | 145 | 67 | 1 | 12 | 154 | 9 | 153 | 5.37e-49 | 159 |
| Msa0543660 | MtrunA17_Chr6g0461731 | 50.318 | 157 | 65 | 2 | 11 | 154 | 28 | 184 | 6.25e-49 | 159 |
| Msa0543660 | MtrunA17_Chr6g0461761 | 49.686 | 159 | 67 | 2 | 9 | 154 | 3 | 161 | 7.56e-49 | 159 |
| Msa0543660 | MtrunA17_Chr4g0072611 | 50.336 | 149 | 72 | 1 | 8 | 154 | 6 | 154 | 1.16e-48 | 158 |
| Msa0543660 | MtrunA17_Chr1g0206681 | 48.684 | 152 | 73 | 2 | 8 | 154 | 12 | 163 | 5.83e-48 | 156 |
| Msa0543660 | MtrunA17_Chr1g0206081 | 49.677 | 155 | 67 | 3 | 11 | 154 | 13 | 167 | 6.86e-47 | 154 |
| Msa0543660 | MtrunA17_Chr2g0299061 | 50.000 | 148 | 71 | 2 | 10 | 154 | 8 | 155 | 2.97e-46 | 152 |
| Msa0543660 | MtrunA17_Chr4g0072671 | 52.985 | 134 | 61 | 1 | 23 | 154 | 22 | 155 | 4.06e-46 | 151 |
| Msa0543660 | MtrunA17_Chr5g0443391 | 46.541 | 159 | 78 | 3 | 1 | 154 | 1 | 157 | 1.90e-44 | 147 |
| Msa0543660 | MtrunA17_Chr6g0486581 | 44.898 | 147 | 81 | 0 | 8 | 154 | 7 | 153 | 3.24e-44 | 147 |
| Msa0543660 | MtrunA17_Chr4g0072601 | 56.522 | 115 | 50 | 0 | 40 | 154 | 43 | 157 | 1.34e-42 | 142 |
| Msa0543660 | MtrunA17_Chr3g0096651 | 56.250 | 112 | 49 | 0 | 43 | 154 | 48 | 159 | 5.15e-42 | 141 |
| Msa0543660 | MtrunA17_Chr4g0072681 | 60.227 | 88 | 35 | 0 | 67 | 154 | 25 | 112 | 1.76e-36 | 125 |
| Msa0543660 | MtrunA17_Chr8g0340001 | 55.556 | 99 | 44 | 0 | 56 | 154 | 8 | 106 | 3.95e-36 | 124 |
| Msa0543660 | MtrunA17_Chr8g0375981 | 43.671 | 158 | 74 | 5 | 11 | 154 | 9 | 165 | 1.48e-31 | 115 |
| Msa0543660 | MtrunA17_Chr1g0161951 | 41.358 | 162 | 82 | 5 | 5 | 154 | 7 | 167 | 4.51e-31 | 114 |
| Msa0543660 | MtrunA17_Chr7g0264731 | 40.972 | 144 | 72 | 3 | 24 | 154 | 29 | 172 | 1.14e-29 | 109 |
| Msa0543660 | MtrunA17_Chr2g0303861 | 40.458 | 131 | 75 | 2 | 27 | 154 | 29 | 159 | 2.05e-29 | 108 |
| Msa0543660 | MtrunA17_Chr4g0028221 | 41.176 | 136 | 72 | 3 | 27 | 154 | 50 | 185 | 1.70e-28 | 106 |
| Msa0543660 | MtrunA17_Chr1g0180451 | 45.536 | 112 | 53 | 2 | 51 | 154 | 64 | 175 | 2.93e-28 | 105 |
| Msa0543660 | MtrunA17_Chr2g0327411 | 36.416 | 173 | 90 | 4 | 1 | 154 | 18 | 189 | 2.42e-27 | 103 |
| Msa0543660 | MtrunA17_Chr7g0235541 | 54.545 | 88 | 34 | 2 | 72 | 154 | 1 | 87 | 1.07e-26 | 99.8 |
| Msa0543660 | MtrunA17_Chr5g0410621 | 40.411 | 146 | 73 | 4 | 23 | 154 | 31 | 176 | 1.17e-26 | 102 |
| Msa0543660 | MtrunA17_Chr8g0365231 | 44.167 | 120 | 62 | 2 | 40 | 154 | 61 | 180 | 1.22e-26 | 101 |
| Msa0543660 | MtrunA17_Chr8g0382041 | 41.525 | 118 | 63 | 2 | 43 | 154 | 52 | 169 | 1.90e-25 | 99.0 |
| Msa0543660 | MtrunA17_Chr8g0390201 | 58.462 | 65 | 27 | 0 | 90 | 154 | 15 | 79 | 5.15e-24 | 92.8 |
| Msa0543660 | MtrunA17_Chr2g0303721 | 35.878 | 131 | 73 | 3 | 27 | 154 | 30 | 152 | 4.27e-23 | 91.7 |
| Msa0543660 | MtrunA17_Chr8g0390181 | 36.585 | 82 | 51 | 1 | 12 | 92 | 12 | 93 | 9.03e-12 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0543660 | AT4G03210.1 | 72.185 | 151 | 35 | 1 | 11 | 154 | 6 | 156 | 4.52e-78 | 233 |
| Msa0543660 | AT4G03210.2 | 76.991 | 113 | 20 | 1 | 48 | 154 | 16 | 128 | 1.19e-58 | 183 |
| Msa0543660 | AT5G13870.2 | 51.899 | 158 | 72 | 2 | 1 | 154 | 4 | 161 | 3.20e-52 | 167 |
| Msa0543660 | AT5G13870.1 | 51.899 | 158 | 72 | 2 | 1 | 154 | 4 | 161 | 3.20e-52 | 167 |
| Msa0543660 | AT5G13870.3 | 51.899 | 158 | 72 | 2 | 1 | 154 | 4 | 161 | 3.20e-52 | 167 |
| Msa0543660 | AT4G37800.1 | 51.634 | 153 | 68 | 3 | 8 | 154 | 12 | 164 | 3.65e-52 | 167 |
| Msa0543660 | AT5G65730.1 | 50.000 | 150 | 71 | 3 | 8 | 154 | 17 | 165 | 3.27e-50 | 162 |
| Msa0543660 | AT1G11545.1 | 51.875 | 160 | 70 | 3 | 2 | 154 | 11 | 170 | 3.28e-50 | 163 |
| Msa0543660 | AT3G23730.1 | 53.061 | 147 | 63 | 3 | 11 | 154 | 13 | 156 | 2.18e-49 | 160 |
| Msa0543660 | AT5G57550.1 | 50.000 | 154 | 69 | 2 | 9 | 154 | 6 | 159 | 2.16e-48 | 157 |
| Msa0543660 | AT4G14130.1 | 50.641 | 156 | 72 | 3 | 2 | 154 | 4 | 157 | 5.48e-48 | 157 |
| Msa0543660 | AT5G57560.1 | 47.368 | 152 | 76 | 2 | 5 | 154 | 3 | 152 | 1.36e-47 | 155 |
| Msa0543660 | AT4G25810.1 | 48.980 | 147 | 72 | 2 | 11 | 154 | 9 | 155 | 4.59e-47 | 154 |
| Msa0543660 | AT4G30270.1 | 48.276 | 145 | 73 | 1 | 12 | 154 | 9 | 153 | 5.32e-47 | 154 |
| Msa0543660 | AT2G14620.1 | 49.007 | 151 | 72 | 2 | 9 | 154 | 16 | 166 | 1.11e-45 | 151 |
| Msa0543660 | AT2G06850.1 | 55.385 | 130 | 56 | 1 | 27 | 154 | 35 | 164 | 1.44e-45 | 150 |
| Msa0543660 | AT2G18800.1 | 49.342 | 152 | 70 | 2 | 5 | 154 | 11 | 157 | 6.36e-45 | 149 |
| Msa0543660 | AT4G28850.1 | 46.897 | 145 | 71 | 1 | 16 | 154 | 12 | 156 | 5.16e-43 | 144 |
| Msa0543660 | AT5G57530.1 | 52.586 | 116 | 55 | 0 | 39 | 154 | 41 | 156 | 1.30e-42 | 143 |
| Msa0543660 | AT5G48070.1 | 54.867 | 113 | 51 | 0 | 42 | 154 | 47 | 159 | 2.36e-42 | 142 |
| Msa0543660 | AT4G25820.1 | 47.826 | 138 | 70 | 1 | 19 | 154 | 22 | 159 | 2.50e-42 | 142 |
| Msa0543660 | AT5G57540.1 | 52.586 | 116 | 55 | 0 | 39 | 154 | 40 | 155 | 6.47e-42 | 141 |
| Msa0543660 | AT4G13090.1 | 44.375 | 160 | 81 | 2 | 3 | 154 | 2 | 161 | 2.58e-40 | 137 |
| Msa0543660 | AT4G13080.1 | 51.538 | 130 | 60 | 2 | 27 | 154 | 39 | 167 | 4.69e-40 | 136 |
| Msa0543660 | AT2G14620.2 | 57.576 | 99 | 42 | 0 | 56 | 154 | 18 | 116 | 5.07e-40 | 135 |
| Msa0543660 | AT2G06850.2 | 58.416 | 101 | 42 | 0 | 54 | 154 | 4 | 104 | 1.01e-38 | 131 |
| Msa0543660 | AT2G14620.3 | 58.889 | 90 | 37 | 0 | 65 | 154 | 16 | 105 | 6.45e-38 | 129 |
| Msa0543660 | AT3G25050.1 | 45.385 | 130 | 69 | 1 | 27 | 154 | 35 | 164 | 1.70e-36 | 127 |
| Msa0543660 | AT4G30290.1 | 53.097 | 113 | 53 | 0 | 42 | 154 | 42 | 154 | 5.14e-36 | 125 |
| Msa0543660 | AT1G65310.1 | 51.515 | 99 | 48 | 0 | 56 | 154 | 61 | 159 | 2.24e-35 | 124 |
| Msa0543660 | AT1G65310.2 | 51.515 | 99 | 48 | 0 | 56 | 154 | 83 | 181 | 2.77e-35 | 124 |
| Msa0543660 | AT4G30280.1 | 51.515 | 99 | 48 | 0 | 56 | 154 | 61 | 159 | 5.17e-35 | 123 |
| Msa0543660 | AT3G44990.1 | 45.455 | 143 | 70 | 3 | 20 | 154 | 32 | 174 | 7.10e-34 | 120 |
| Msa0543660 | AT2G01850.1 | 43.312 | 157 | 80 | 4 | 5 | 154 | 11 | 165 | 2.81e-30 | 112 |
| Msa0543660 | AT2G36870.2 | 40.288 | 139 | 75 | 2 | 24 | 154 | 40 | 178 | 3.90e-30 | 108 |
| Msa0543660 | AT1G14720.1 | 41.026 | 156 | 83 | 4 | 8 | 154 | 10 | 165 | 6.14e-30 | 111 |
| Msa0543660 | AT2G36870.1 | 40.441 | 136 | 73 | 2 | 27 | 154 | 43 | 178 | 1.83e-29 | 109 |
| Msa0543660 | AT1G10550.1 | 46.552 | 116 | 57 | 2 | 44 | 154 | 60 | 175 | 2.20e-28 | 106 |
| Msa0543660 | AT3G48580.1 | 43.860 | 114 | 63 | 1 | 41 | 154 | 49 | 161 | 9.37e-28 | 104 |
| Msa0543660 | AT1G32170.1 | 40.252 | 159 | 82 | 5 | 8 | 154 | 9 | 166 | 2.12e-27 | 104 |
| Msa0543660 | AT4G18990.1 | 43.411 | 129 | 60 | 3 | 39 | 154 | 46 | 174 | 5.92e-27 | 103 |
| Msa0543660 | AT3G48580.3 | 44.000 | 100 | 55 | 1 | 55 | 154 | 4 | 102 | 1.32e-24 | 94.7 |
| Msa0543660 | AT4G18990.2 | 52.459 | 61 | 27 | 1 | 96 | 154 | 40 | 100 | 5.82e-17 | 75.9 |
| Msa0543660 | AT3G48580.2 | 38.947 | 95 | 57 | 1 | 41 | 135 | 49 | 142 | 1.69e-16 | 74.3 |
Find 34 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTATCAAGTTTGAGTTTA+AGG | 0.041776 | 4_1:+30247086 | None:intergenic |
| CTGAACCTCTTTGGCTTGTT+GGG | 0.226860 | 4_1:+30247294 | None:intergenic |
| CCCAAACATATACTTGCTTT+TGG | 0.249364 | 4_1:+30246770 | None:intergenic |
| ACATTTGTTTGCACAGAATA+AGG | 0.263774 | 4_1:+30245740 | None:intergenic |
| GATCTCCTTCATTGAGAAAA+TGG | 0.276404 | 4_1:+30247110 | None:intergenic |
| TCCAAAAGCAAGTATATGTT+TGG | 0.311980 | 4_1:-30246771 | Msa0543660:CDS |
| ATGATGTGTCTATTGAATTA+TGG | 0.335350 | 4_1:-30247381 | Msa0543660:five_prime_UTR |
| TTTGAGACACTGAACCTCTT+TGG | 0.340400 | 4_1:+30247285 | None:intergenic |
| ACTGAACCTCTTTGGCTTGT+TGG | 0.341838 | 4_1:+30247293 | None:intergenic |
| CTCAAACTTGATAACTCTTC+TGG | 0.342527 | 4_1:-30247079 | Msa0543660:intron |
| AAATCAAACTCGTTGTGGTT+TGG | 0.361017 | 4_1:+30245791 | None:intergenic |
| TGAACTCTTTCAACCAAGTT+GGG | 0.408515 | 4_1:-30247140 | Msa0543660:CDS |
| ATGAACTCTTTCAACCAAGT+TGG | 0.443895 | 4_1:-30247141 | Msa0543660:CDS |
| CCAAAAGCAAGTATATGTTT+GGG | 0.446940 | 4_1:-30246770 | Msa0543660:CDS |
| AATGTGTATGTGAATGGAAT+TGG | 0.448488 | 4_1:-30245722 | Msa0543660:CDS |
| ATCCAGCTTAAGCTTGTTGA+AGG | 0.448965 | 4_1:-30246738 | Msa0543660:CDS |
| GTGAGCAAAGACTTAACCTT+TGG | 0.449716 | 4_1:-30245694 | Msa0543660:CDS |
| TTGAAAGAGTTCATCAAACT+TGG | 0.455202 | 4_1:+30247150 | None:intergenic |
| CACCTTCAACAAGCTTAAGC+TGG | 0.489730 | 4_1:+30246736 | None:intergenic |
| CTTGTTGAAGGTGACTCAGC+TGG | 0.494006 | 4_1:-30246726 | Msa0543660:CDS |
| CAAACAAATGTGTATGTGAA+TGG | 0.495017 | 4_1:-30245728 | Msa0543660:CDS |
| AGAGTAAGAGTGAAAATCCT+TGG | 0.520212 | 4_1:+30245661 | None:intergenic |
| TAAGAGTGAAAATCCTTGGT+AGG | 0.527500 | 4_1:+30245665 | None:intergenic |
| ATTCAAAATCAAACTCGTTG+TGG | 0.538842 | 4_1:+30245786 | None:intergenic |
| AAATGGTCAAAAGCCCAACT+TGG | 0.561534 | 4_1:+30247127 | None:intergenic |
| GAGTTCATCAAACTTGGAAG+AGG | 0.579984 | 4_1:+30247156 | None:intergenic |
| AAAGGTTAAGTCTTTGCTCA+CGG | 0.581166 | 4_1:+30245696 | None:intergenic |
| AAGAGTGAAAATCCTTGGTA+GGG | 0.591421 | 4_1:+30245666 | None:intergenic |
| CCTTGGTAGGGTCAAACCAA+AGG | 0.593403 | 4_1:+30245678 | None:intergenic |
| GTGATATAGATGTCATCAGA+GGG | 0.614058 | 4_1:-30245815 | Msa0543660:intron |
| TTCCATCCTGGCATCTGATG+TGG | 0.618351 | 4_1:-30247415 | None:intergenic |
| CCTTTGGTTTGACCCTACCA+AGG | 0.640836 | 4_1:-30245678 | Msa0543660:CDS |
| TGTGATATAGATGTCATCAG+AGG | 0.645456 | 4_1:-30245816 | Msa0543660:intron |
| ATTCAATAGACACATCATCG+AGG | 0.777543 | 4_1:+30247386 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCAATTTAAATTTTTAAG+TGG | + | chr4_1:30245697-30245716 | None:intergenic | 10.0% |
| !!! | ACAAAAATATGTTTAAAATA+TGG | + | chr4_1:30246110-30246129 | None:intergenic | 10.0% |
| !! | ATTGTTTAATTAATTAACAA+TGG | - | chr4_1:30246210-30246229 | Msa0543660:intron | 10.0% |
| !!! | TTTCAATTTAAATTTTTAAG+TGG | + | chr4_1:30245697-30245716 | None:intergenic | 10.0% |
| !!! | ACAAAAATATGTTTAAAATA+TGG | + | chr4_1:30246110-30246129 | None:intergenic | 10.0% |
| !! | ATTGTTTAATTAATTAACAA+TGG | - | chr4_1:30246210-30246229 | Msa0543660:intron | 10.0% |
| !!! | CTATGTTTTAAAAGATTTTA+AGG | + | chr4_1:30246034-30246053 | None:intergenic | 15.0% |
| !! | TTAAAACATAGAATTTATCA+TGG | - | chr4_1:30246043-30246062 | Msa0543660:intron | 15.0% |
| !!! | TTTTTTTTAATCTAATGTGA+AGG | - | chr4_1:30246457-30246476 | Msa0543660:intron | 15.0% |
| !! | TAACAAAAGCAAATATTAAT+TGG | + | chr4_1:30246745-30246764 | None:intergenic | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | + | chr4_1:30246941-30246960 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | + | chr4_1:30246942-30246961 | None:intergenic | 15.0% |
| !!! | AAGAAAAGTGTATAAATAAA+GGG | + | chr4_1:30247006-30247025 | None:intergenic | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | + | chr4_1:30247007-30247026 | None:intergenic | 15.0% |
| !! | TTTATATTCATAATATTCTG+TGG | - | chr4_1:30247102-30247121 | Msa0543660:CDS | 15.0% |
| !!! | CTATGTTTTAAAAGATTTTA+AGG | + | chr4_1:30246034-30246053 | None:intergenic | 15.0% |
| !! | TTAAAACATAGAATTTATCA+TGG | - | chr4_1:30246043-30246062 | Msa0543660:intron | 15.0% |
| !!! | TTTTTTTTAATCTAATGTGA+AGG | - | chr4_1:30246457-30246476 | Msa0543660:intron | 15.0% |
| !! | TAACAAAAGCAAATATTAAT+TGG | + | chr4_1:30246745-30246764 | None:intergenic | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | + | chr4_1:30246941-30246960 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | + | chr4_1:30246942-30246961 | None:intergenic | 15.0% |
| !!! | AAGAAAAGTGTATAAATAAA+GGG | + | chr4_1:30247006-30247025 | None:intergenic | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | + | chr4_1:30247007-30247026 | None:intergenic | 15.0% |
| !! | TTTATATTCATAATATTCTG+TGG | - | chr4_1:30247102-30247121 | Msa0543660:CDS | 15.0% |
| !!! | TTTAAATTTTTAAGTGGCTT+GGG | + | chr4_1:30245691-30245710 | None:intergenic | 20.0% |
| !!! | ATTTAAATTTTTAAGTGGCT+TGG | + | chr4_1:30245692-30245711 | None:intergenic | 20.0% |
| !!! | TATTTTGATCACTTCTAAAA+TGG | - | chr4_1:30246134-30246153 | Msa0543660:intron | 20.0% |
| !!! | ATTTTGATCACTTCTAAAAT+GGG | - | chr4_1:30246135-30246154 | Msa0543660:intron | 20.0% |
| !! | TTAATTAATTAACAATGGCA+TGG | - | chr4_1:30246215-30246234 | Msa0543660:intron | 20.0% |
| !! | TTTCTCAATATACTAAAGAA+TGG | + | chr4_1:30246395-30246414 | None:intergenic | 20.0% |
| !!! | GAACTGTATATTATTGATTA+GGG | + | chr4_1:30246625-30246644 | None:intergenic | 20.0% |
| !!! | TGAACTGTATATTATTGATT+AGG | + | chr4_1:30246626-30246645 | None:intergenic | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | + | chr4_1:30246872-30246891 | None:intergenic | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | + | chr4_1:30246908-30246927 | None:intergenic | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | + | chr4_1:30246909-30246928 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | chr4_1:30246982-30247001 | None:intergenic | 20.0% |
| !!! | AGAAAAGTGTATAAATAAAG+GGG | + | chr4_1:30247005-30247024 | None:intergenic | 20.0% |
| !!! | GGTAGTACTAAATTAATTTT+TGG | - | chr4_1:30247070-30247089 | Msa0543660:intron | 20.0% |
| !!! | GAGTTTGATTTTGAATTTTT+AGG | - | chr4_1:30247252-30247271 | Msa0543660:five_prime_UTR | 20.0% |
| !!! | TTTAAATTTTTAAGTGGCTT+GGG | + | chr4_1:30245691-30245710 | None:intergenic | 20.0% |
| !!! | ATTTAAATTTTTAAGTGGCT+TGG | + | chr4_1:30245692-30245711 | None:intergenic | 20.0% |
| !!! | TATTTTGATCACTTCTAAAA+TGG | - | chr4_1:30246134-30246153 | Msa0543660:intron | 20.0% |
| !!! | ATTTTGATCACTTCTAAAAT+GGG | - | chr4_1:30246135-30246154 | Msa0543660:intron | 20.0% |
| !! | TTAATTAATTAACAATGGCA+TGG | - | chr4_1:30246215-30246234 | Msa0543660:intron | 20.0% |
| !! | TTTCTCAATATACTAAAGAA+TGG | + | chr4_1:30246395-30246414 | None:intergenic | 20.0% |
| !!! | GAACTGTATATTATTGATTA+GGG | + | chr4_1:30246625-30246644 | None:intergenic | 20.0% |
| !!! | TGAACTGTATATTATTGATT+AGG | + | chr4_1:30246626-30246645 | None:intergenic | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | + | chr4_1:30246872-30246891 | None:intergenic | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | + | chr4_1:30246908-30246927 | None:intergenic | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | + | chr4_1:30246909-30246928 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | chr4_1:30246982-30247001 | None:intergenic | 20.0% |
| !!! | AGAAAAGTGTATAAATAAAG+GGG | + | chr4_1:30247005-30247024 | None:intergenic | 20.0% |
| !!! | GGTAGTACTAAATTAATTTT+TGG | - | chr4_1:30247070-30247089 | Msa0543660:intron | 20.0% |
| !!! | GAGTTTGATTTTGAATTTTT+AGG | - | chr4_1:30247252-30247271 | Msa0543660:five_prime_UTR | 20.0% |
| ! | ATGATGTGTCTATTGAATTA+TGG | - | chr4_1:30245650-30245669 | Msa0543660:CDS | 25.0% |
| !!! | TCAAAAATGTCTTGGTTTTT+TGG | - | chr4_1:30245814-30245833 | Msa0543660:intron | 25.0% |
| !! | AGTTATCAAGTTTGAGTTTA+AGG | + | chr4_1:30245948-30245967 | None:intergenic | 25.0% |
| ! | TTAAGGTGTGAAAAATAACT+AGG | + | chr4_1:30246017-30246036 | None:intergenic | 25.0% |
| !! | CCATTGATGACAAAATTAAA+GGG | + | chr4_1:30246583-30246602 | None:intergenic | 25.0% |
| !! | TCCATTGATGACAAAATTAA+AGG | + | chr4_1:30246584-30246603 | None:intergenic | 25.0% |
| ! | CTGTCATATAATAATAACTG+TGG | + | chr4_1:30246711-30246730 | None:intergenic | 25.0% |
| !!! | TTTTTGACTCATTTGATGAT+TGG | + | chr4_1:30246787-30246806 | None:intergenic | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | + | chr4_1:30246873-30246892 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr4_1:30246983-30247002 | None:intergenic | 25.0% |
| ! | TGTATGTGTATGAATTATTG+AGG | - | chr4_1:30247148-30247167 | Msa0543660:CDS | 25.0% |
| ! | ATGATGTGTCTATTGAATTA+TGG | - | chr4_1:30245650-30245669 | Msa0543660:CDS | 25.0% |
| !!! | TCAAAAATGTCTTGGTTTTT+TGG | - | chr4_1:30245814-30245833 | Msa0543660:intron | 25.0% |
| !! | AGTTATCAAGTTTGAGTTTA+AGG | + | chr4_1:30245948-30245967 | None:intergenic | 25.0% |
| ! | TTAAGGTGTGAAAAATAACT+AGG | + | chr4_1:30246017-30246036 | None:intergenic | 25.0% |
| !! | CCATTGATGACAAAATTAAA+GGG | + | chr4_1:30246583-30246602 | None:intergenic | 25.0% |
| !! | TCCATTGATGACAAAATTAA+AGG | + | chr4_1:30246584-30246603 | None:intergenic | 25.0% |
| ! | CTGTCATATAATAATAACTG+TGG | + | chr4_1:30246711-30246730 | None:intergenic | 25.0% |
| !!! | TTTTTGACTCATTTGATGAT+TGG | + | chr4_1:30246787-30246806 | None:intergenic | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | + | chr4_1:30246873-30246892 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr4_1:30246983-30247002 | None:intergenic | 25.0% |
| ! | TGTATGTGTATGAATTATTG+AGG | - | chr4_1:30247148-30247167 | Msa0543660:CDS | 25.0% |
| TCATGTCTTCAAAAATGTCT+TGG | - | chr4_1:30245806-30245825 | Msa0543660:CDS | 30.0% | |
| TTGAAAGAGTTCATCAAACT+TGG | + | chr4_1:30245884-30245903 | None:intergenic | 30.0% | |
| ! | TTTGACCATTTTCTCAATGA+AGG | - | chr4_1:30245916-30245935 | Msa0543660:intron | 30.0% |
| AAAATAACTAGGTTTGTGGT+TGG | + | chr4_1:30246006-30246025 | None:intergenic | 30.0% | |
| GTGAAAAATAACTAGGTTTG+TGG | + | chr4_1:30246010-30246029 | None:intergenic | 30.0% | |
| GAAGAAAAGGTTGAAGAAAA+AGG | + | chr4_1:30246069-30246088 | None:intergenic | 30.0% | |
| TCCAAAAGCAAGTATATGTT+TGG | - | chr4_1:30246260-30246279 | Msa0543660:intron | 30.0% | |
| CCAAAAGCAAGTATATGTTT+GGG | - | chr4_1:30246261-30246280 | Msa0543660:intron | 30.0% | |
| !! | CCCTTTAATTTTGTCATCAA+TGG | - | chr4_1:30246580-30246599 | Msa0543660:intron | 30.0% |
| GCAAATATTAATTGGACAAG+AGG | + | chr4_1:30246737-30246756 | None:intergenic | 30.0% | |
| ! | ATTTGATGATTGGAAAGTAG+GGG | + | chr4_1:30246777-30246796 | None:intergenic | 30.0% |
| ! | CATTTGATGATTGGAAAGTA+GGG | + | chr4_1:30246778-30246797 | None:intergenic | 30.0% |
| ! | TCATTTGATGATTGGAAAGT+AGG | + | chr4_1:30246779-30246798 | None:intergenic | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | + | chr4_1:30246894-30246913 | None:intergenic | 30.0% |
| ! | TTGAAATGGGTCAGTTATTT+TGG | + | chr4_1:30246895-30246914 | None:intergenic | 30.0% |
| TGTATAAATAAAGGGGAAAG+TGG | + | chr4_1:30246998-30247017 | None:intergenic | 30.0% | |
| CAAAGTAGGTCAATTATACT+GGG | - | chr4_1:30247042-30247061 | Msa0543660:intron | 30.0% | |
| ATTCAAAATCAAACTCGTTG+TGG | + | chr4_1:30247248-30247267 | None:intergenic | 30.0% | |
| ACATTTGTTTGCACAGAATA+AGG | + | chr4_1:30247294-30247313 | None:intergenic | 30.0% | |
| CAAACAAATGTGTATGTGAA+TGG | - | chr4_1:30247303-30247322 | Msa0543660:five_prime_UTR | 30.0% | |
| AATGTGTATGTGAATGGAAT+TGG | - | chr4_1:30247309-30247328 | Msa0543660:five_prime_UTR | 30.0% | |
| ! | TTCACTCTTACTCTATTTTC+TGG | - | chr4_1:30247379-30247398 | Msa0543660:five_prime_UTR | 30.0% |
| TCATGTCTTCAAAAATGTCT+TGG | - | chr4_1:30245806-30245825 | Msa0543660:CDS | 30.0% | |
| TTGAAAGAGTTCATCAAACT+TGG | + | chr4_1:30245884-30245903 | None:intergenic | 30.0% | |
| ! | TTTGACCATTTTCTCAATGA+AGG | - | chr4_1:30245916-30245935 | Msa0543660:intron | 30.0% |
| AAAATAACTAGGTTTGTGGT+TGG | + | chr4_1:30246006-30246025 | None:intergenic | 30.0% | |
| GTGAAAAATAACTAGGTTTG+TGG | + | chr4_1:30246010-30246029 | None:intergenic | 30.0% | |
| GAAGAAAAGGTTGAAGAAAA+AGG | + | chr4_1:30246069-30246088 | None:intergenic | 30.0% | |
| TCCAAAAGCAAGTATATGTT+TGG | - | chr4_1:30246260-30246279 | Msa0543660:intron | 30.0% | |
| CCAAAAGCAAGTATATGTTT+GGG | - | chr4_1:30246261-30246280 | Msa0543660:intron | 30.0% | |
| !! | CCCTTTAATTTTGTCATCAA+TGG | - | chr4_1:30246580-30246599 | Msa0543660:intron | 30.0% |
| GCAAATATTAATTGGACAAG+AGG | + | chr4_1:30246737-30246756 | None:intergenic | 30.0% | |
| ! | ATTTGATGATTGGAAAGTAG+GGG | + | chr4_1:30246777-30246796 | None:intergenic | 30.0% |
| ! | CATTTGATGATTGGAAAGTA+GGG | + | chr4_1:30246778-30246797 | None:intergenic | 30.0% |
| ! | TCATTTGATGATTGGAAAGT+AGG | + | chr4_1:30246779-30246798 | None:intergenic | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | + | chr4_1:30246894-30246913 | None:intergenic | 30.0% |
| ! | TTGAAATGGGTCAGTTATTT+TGG | + | chr4_1:30246895-30246914 | None:intergenic | 30.0% |
| TGTATAAATAAAGGGGAAAG+TGG | + | chr4_1:30246998-30247017 | None:intergenic | 30.0% | |
| CAAAGTAGGTCAATTATACT+GGG | - | chr4_1:30247042-30247061 | Msa0543660:intron | 30.0% | |
| ATTCAAAATCAAACTCGTTG+TGG | + | chr4_1:30247248-30247267 | None:intergenic | 30.0% | |
| ACATTTGTTTGCACAGAATA+AGG | + | chr4_1:30247294-30247313 | None:intergenic | 30.0% | |
| CAAACAAATGTGTATGTGAA+TGG | - | chr4_1:30247303-30247322 | Msa0543660:five_prime_UTR | 30.0% | |
| AATGTGTATGTGAATGGAAT+TGG | - | chr4_1:30247309-30247328 | Msa0543660:five_prime_UTR | 30.0% | |
| ! | TTCACTCTTACTCTATTTTC+TGG | - | chr4_1:30247379-30247398 | Msa0543660:five_prime_UTR | 30.0% |
| ATTCAATAGACACATCATCG+AGG | + | chr4_1:30245648-30245667 | None:intergenic | 35.0% | |
| ATGAACTCTTTCAACCAAGT+TGG | - | chr4_1:30245890-30245909 | Msa0543660:intron | 35.0% | |
| TGAACTCTTTCAACCAAGTT+GGG | - | chr4_1:30245891-30245910 | Msa0543660:intron | 35.0% | |
| GATCTCCTTCATTGAGAAAA+TGG | + | chr4_1:30245924-30245943 | None:intergenic | 35.0% | |
| ! | CTCAAACTTGATAACTCTTC+TGG | - | chr4_1:30245952-30245971 | Msa0543660:intron | 35.0% |
| ATTAATGCCACGTGAAGAAA+AGG | + | chr4_1:30246082-30246101 | None:intergenic | 35.0% | |
| ! | CCCAAACATATACTTGCTTT+TGG | + | chr4_1:30246264-30246283 | None:intergenic | 35.0% |
| ! | ATTATTGATTAGGGTCCAAG+AGG | + | chr4_1:30246616-30246635 | None:intergenic | 35.0% |
| ! | TTTGATGATTGGAAAGTAGG+GGG | + | chr4_1:30246776-30246795 | None:intergenic | 35.0% |
| AGAAAATGGGTCAGTTATTC+CGG | + | chr4_1:30246859-30246878 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | - | chr4_1:30247028-30247047 | Msa0543660:intron | 35.0% | |
| CCAGTATAATTGACCTACTT+TGG | + | chr4_1:30247044-30247063 | None:intergenic | 35.0% | |
| CCAAAGTAGGTCAATTATAC+TGG | - | chr4_1:30247041-30247060 | Msa0543660:intron | 35.0% | |
| TGTGATATAGATGTCATCAG+AGG | - | chr4_1:30247215-30247234 | Msa0543660:CDS | 35.0% | |
| GTGATATAGATGTCATCAGA+GGG | - | chr4_1:30247216-30247235 | Msa0543660:CDS | 35.0% | |
| AAATCAAACTCGTTGTGGTT+TGG | + | chr4_1:30247243-30247262 | None:intergenic | 35.0% | |
| !! | GAATTTTTAGGCAACACAAC+AGG | - | chr4_1:30247264-30247283 | Msa0543660:five_prime_UTR | 35.0% |
| AAAGGTTAAGTCTTTGCTCA+CGG | + | chr4_1:30247338-30247357 | None:intergenic | 35.0% | |
| AAGAGTGAAAATCCTTGGTA+GGG | + | chr4_1:30247368-30247387 | None:intergenic | 35.0% | |
| TAAGAGTGAAAATCCTTGGT+AGG | + | chr4_1:30247369-30247388 | None:intergenic | 35.0% | |
| AGAGTAAGAGTGAAAATCCT+TGG | + | chr4_1:30247373-30247392 | None:intergenic | 35.0% | |
| ATTCAATAGACACATCATCG+AGG | + | chr4_1:30245648-30245667 | None:intergenic | 35.0% | |
| ATGAACTCTTTCAACCAAGT+TGG | - | chr4_1:30245890-30245909 | Msa0543660:intron | 35.0% | |
| TGAACTCTTTCAACCAAGTT+GGG | - | chr4_1:30245891-30245910 | Msa0543660:intron | 35.0% | |
| GATCTCCTTCATTGAGAAAA+TGG | + | chr4_1:30245924-30245943 | None:intergenic | 35.0% | |
| ! | CTCAAACTTGATAACTCTTC+TGG | - | chr4_1:30245952-30245971 | Msa0543660:intron | 35.0% |
| ATTAATGCCACGTGAAGAAA+AGG | + | chr4_1:30246082-30246101 | None:intergenic | 35.0% | |
| ! | CCCAAACATATACTTGCTTT+TGG | + | chr4_1:30246264-30246283 | None:intergenic | 35.0% |
| ! | ATTATTGATTAGGGTCCAAG+AGG | + | chr4_1:30246616-30246635 | None:intergenic | 35.0% |
| ! | TTTGATGATTGGAAAGTAGG+GGG | + | chr4_1:30246776-30246795 | None:intergenic | 35.0% |
| AGAAAATGGGTCAGTTATTC+CGG | + | chr4_1:30246859-30246878 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | - | chr4_1:30247028-30247047 | Msa0543660:intron | 35.0% | |
| CCAGTATAATTGACCTACTT+TGG | + | chr4_1:30247044-30247063 | None:intergenic | 35.0% | |
| CCAAAGTAGGTCAATTATAC+TGG | - | chr4_1:30247041-30247060 | Msa0543660:intron | 35.0% | |
| TGTGATATAGATGTCATCAG+AGG | - | chr4_1:30247215-30247234 | Msa0543660:CDS | 35.0% | |
| GTGATATAGATGTCATCAGA+GGG | - | chr4_1:30247216-30247235 | Msa0543660:CDS | 35.0% | |
| AAATCAAACTCGTTGTGGTT+TGG | + | chr4_1:30247243-30247262 | None:intergenic | 35.0% | |
| !! | GAATTTTTAGGCAACACAAC+AGG | - | chr4_1:30247264-30247283 | Msa0543660:five_prime_UTR | 35.0% |
| AAAGGTTAAGTCTTTGCTCA+CGG | + | chr4_1:30247338-30247357 | None:intergenic | 35.0% | |
| AAGAGTGAAAATCCTTGGTA+GGG | + | chr4_1:30247368-30247387 | None:intergenic | 35.0% | |
| TAAGAGTGAAAATCCTTGGT+AGG | + | chr4_1:30247369-30247388 | None:intergenic | 35.0% | |
| AGAGTAAGAGTGAAAATCCT+TGG | + | chr4_1:30247373-30247392 | None:intergenic | 35.0% | |
| !!! | GGCTTGTTGGGTTTTTATAG+TGG | + | chr4_1:30245728-30245747 | None:intergenic | 40.0% |
| AAAAACCCAACAAGCCAAAG+AGG | - | chr4_1:30245732-30245751 | Msa0543660:CDS | 40.0% | |
| ! | TTTGAGACACTGAACCTCTT+TGG | + | chr4_1:30245749-30245768 | None:intergenic | 40.0% |
| GAGTTCATCAAACTTGGAAG+AGG | + | chr4_1:30245878-30245897 | None:intergenic | 40.0% | |
| AAATGGTCAAAAGCCCAACT+TGG | + | chr4_1:30245907-30245926 | None:intergenic | 40.0% | |
| ! | TCTTCAACCTTTTCTTCACG+TGG | - | chr4_1:30246072-30246091 | Msa0543660:intron | 40.0% |
| TAACAATGGCATGGACATTC+AGG | - | chr4_1:30246224-30246243 | Msa0543660:intron | 40.0% | |
| !! | ATCCAGCTTAAGCTTGTTGA+AGG | - | chr4_1:30246293-30246312 | Msa0543660:intron | 40.0% |
| GAAAATGGGTCAGTTATTCC+GGG | + | chr4_1:30246858-30246877 | None:intergenic | 40.0% | |
| GTAGGTCAATTATACTGGGA+CGG | - | chr4_1:30247046-30247065 | Msa0543660:intron | 40.0% | |
| GTGAGCAAAGACTTAACCTT+TGG | - | chr4_1:30247337-30247356 | Msa0543660:five_prime_UTR | 40.0% | |
| !!! | GGCTTGTTGGGTTTTTATAG+TGG | + | chr4_1:30245728-30245747 | None:intergenic | 40.0% |
| AAAAACCCAACAAGCCAAAG+AGG | - | chr4_1:30245732-30245751 | Msa0543660:CDS | 40.0% | |
| ! | TTTGAGACACTGAACCTCTT+TGG | + | chr4_1:30245749-30245768 | None:intergenic | 40.0% |
| GAGTTCATCAAACTTGGAAG+AGG | + | chr4_1:30245878-30245897 | None:intergenic | 40.0% | |
| AAATGGTCAAAAGCCCAACT+TGG | + | chr4_1:30245907-30245926 | None:intergenic | 40.0% | |
| ! | TCTTCAACCTTTTCTTCACG+TGG | - | chr4_1:30246072-30246091 | Msa0543660:intron | 40.0% |
| TAACAATGGCATGGACATTC+AGG | - | chr4_1:30246224-30246243 | Msa0543660:intron | 40.0% | |
| !! | ATCCAGCTTAAGCTTGTTGA+AGG | - | chr4_1:30246293-30246312 | Msa0543660:intron | 40.0% |
| GAAAATGGGTCAGTTATTCC+GGG | + | chr4_1:30246858-30246877 | None:intergenic | 40.0% | |
| GTAGGTCAATTATACTGGGA+CGG | - | chr4_1:30247046-30247065 | Msa0543660:intron | 40.0% | |
| GTGAGCAAAGACTTAACCTT+TGG | - | chr4_1:30247337-30247356 | Msa0543660:five_prime_UTR | 40.0% | |
| !! | CTGAACCTCTTTGGCTTGTT+GGG | + | chr4_1:30245740-30245759 | None:intergenic | 45.0% |
| !! | ACTGAACCTCTTTGGCTTGT+TGG | + | chr4_1:30245741-30245760 | None:intergenic | 45.0% |
| CACCTTCAACAAGCTTAAGC+TGG | + | chr4_1:30246298-30246317 | None:intergenic | 45.0% | |
| AATGGAGATGCTCTACCTCT+TGG | - | chr4_1:30246598-30246617 | Msa0543660:intron | 45.0% | |
| !! | CTGAACCTCTTTGGCTTGTT+GGG | + | chr4_1:30245740-30245759 | None:intergenic | 45.0% |
| !! | ACTGAACCTCTTTGGCTTGT+TGG | + | chr4_1:30245741-30245760 | None:intergenic | 45.0% |
| CACCTTCAACAAGCTTAAGC+TGG | + | chr4_1:30246298-30246317 | None:intergenic | 45.0% | |
| AATGGAGATGCTCTACCTCT+TGG | - | chr4_1:30246598-30246617 | Msa0543660:intron | 45.0% | |
| !!! | AATTTTTTACATTTATATTT+TGG | - | chr4_1:30246659-30246678 | Msa0543660:intron | 5.0% |
| !!! | AATTTTTTACATTTATATTT+TGG | - | chr4_1:30246659-30246678 | Msa0543660:intron | 5.0% |
| CTTGTTGAAGGTGACTCAGC+TGG | - | chr4_1:30246305-30246324 | Msa0543660:intron | 50.0% | |
| ACTTTATACTCCCTCCGTCC+CGG | - | chr4_1:30246837-30246856 | Msa0543660:intron | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | + | chr4_1:30246854-30246873 | None:intergenic | 50.0% | |
| GGTCAATTATACTGGGACGG+AGG | - | chr4_1:30247049-30247068 | Msa0543660:intron | 50.0% | |
| CCTTGGTAGGGTCAAACCAA+AGG | + | chr4_1:30247356-30247375 | None:intergenic | 50.0% | |
| !! | CCTTTGGTTTGACCCTACCA+AGG | - | chr4_1:30247353-30247372 | Msa0543660:five_prime_UTR | 50.0% |
| CTTGTTGAAGGTGACTCAGC+TGG | - | chr4_1:30246305-30246324 | Msa0543660:intron | 50.0% | |
| ACTTTATACTCCCTCCGTCC+CGG | - | chr4_1:30246837-30246856 | Msa0543660:intron | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | + | chr4_1:30246854-30246873 | None:intergenic | 50.0% | |
| GGTCAATTATACTGGGACGG+AGG | - | chr4_1:30247049-30247068 | Msa0543660:intron | 50.0% | |
| CCTTGGTAGGGTCAAACCAA+AGG | + | chr4_1:30247356-30247375 | None:intergenic | 50.0% | |
| !! | CCTTTGGTTTGACCCTACCA+AGG | - | chr4_1:30247353-30247372 | Msa0543660:five_prime_UTR | 50.0% |
| TGGCATGGACATTCAGGTGC+TGG | - | chr4_1:30246230-30246249 | Msa0543660:intron | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | + | chr4_1:30246850-30246869 | None:intergenic | 55.0% | |
| TGGCATGGACATTCAGGTGC+TGG | - | chr4_1:30246230-30246249 | Msa0543660:intron | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | + | chr4_1:30246850-30246869 | None:intergenic | 55.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | + | chr4_1:30246851-30246870 | None:intergenic | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | + | chr4_1:30246851-30246870 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 30245631 | 30247422 | 30245631 | ID=Msa0543660;Name=Msa0543660 |
| chr4_1 | mRNA | 30245631 | 30247422 | 30245631 | ID=Msa0543660-mRNA-1;Parent=Msa0543660;Name=Msa0543660-mRNA-1;_AED=0.25;_eAED=0.25;_QI=177|1|0.66|1|1|1|3|0|154 |
| chr4_1 | exon | 30245631 | 30245828 | 30245631 | ID=Msa0543660-mRNA-1:exon:8018;Parent=Msa0543660-mRNA-1 |
| chr4_1 | exon | 30246707 | 30246807 | 30246707 | ID=Msa0543660-mRNA-1:exon:8017;Parent=Msa0543660-mRNA-1 |
| chr4_1 | exon | 30247080 | 30247422 | 30247080 | ID=Msa0543660-mRNA-1:exon:8016;Parent=Msa0543660-mRNA-1 |
| chr4_1 | five_prime_UTR | 30247246 | 30247422 | 30247246 | ID=Msa0543660-mRNA-1:five_prime_utr;Parent=Msa0543660-mRNA-1 |
| chr4_1 | CDS | 30247080 | 30247245 | 30247080 | ID=Msa0543660-mRNA-1:cds;Parent=Msa0543660-mRNA-1 |
| chr4_1 | CDS | 30246707 | 30246807 | 30246707 | ID=Msa0543660-mRNA-1:cds;Parent=Msa0543660-mRNA-1 |
| chr4_1 | CDS | 30245631 | 30245828 | 30245631 | ID=Msa0543660-mRNA-1:cds;Parent=Msa0543660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
