Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0203010 | XP_013463539.1 | 91.905 | 210 | 17 | 0 | 1 | 210 | 1 | 210 | 1.98e-137 | 393 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0203010 | sp|Q9ZRA4|AB19A_PRUPE | 72.115 | 208 | 57 | 1 | 3 | 209 | 1 | 208 | 1.14e-103 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0203010 | A0A072V680 | 91.905 | 210 | 17 | 0 | 1 | 210 | 1 | 210 | 9.44e-138 | 393 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0203010 | 0.808872 | 2.501511e-50 | -8.615850e-47 |
| Msa0036430 | Msa0203010 | 0.815558 | 8.693792e-52 | -8.615850e-47 |
| Msa0101810 | Msa0203010 | -0.807284 | 5.448285e-50 | -8.615850e-47 |
| Msa0110970 | Msa0203010 | 0.824815 | 6.577895e-54 | -8.615850e-47 |
| Msa0130570 | Msa0203010 | 0.800590 | 1.342153e-48 | -8.615850e-47 |
| Msa0149560 | Msa0203010 | 0.802304 | 5.979546e-49 | -8.615850e-47 |
| Msa0153420 | Msa0203010 | 0.818643 | 1.761096e-52 | -8.615850e-47 |
| Msa0157290 | Msa0203010 | 0.809142 | 2.190169e-50 | -8.615850e-47 |
| Msa0203010 | Msa0203020 | 0.913462 | 5.983969e-84 | -8.615850e-47 |
| Msa0203010 | Msa0203030 | 0.893579 | 5.513557e-75 | -8.615850e-47 |
| Msa0203010 | Msa0219190 | 0.831738 | 1.408277e-55 | -8.615850e-47 |
| Msa0203010 | Msa0298240 | 0.816241 | 6.122145e-52 | -8.615850e-47 |
| Msa0203010 | Msa0322830 | 0.822053 | 2.909444e-53 | -8.615850e-47 |
| Msa0203010 | Msa0322840 | 0.856561 | 2.960954e-62 | -8.615850e-47 |
| Msa0203010 | Msa0322860 | 0.815285 | 9.998029e-52 | -8.615850e-47 |
| Msa0203010 | Msa0344570 | 0.820145 | 8.005591e-53 | -8.615850e-47 |
| Msa0203010 | Msa0392420 | 0.822246 | 2.624353e-53 | -8.615850e-47 |
| Msa0203010 | Msa0392460 | 0.818730 | 1.682801e-52 | -8.615850e-47 |
| Msa0203010 | Msa0392490 | 0.827041 | 1.947852e-54 | -8.615850e-47 |
| Msa0203010 | Msa0417440 | 0.808711 | 2.708337e-50 | -8.615850e-47 |
| Msa0203010 | Msa0419820 | 0.811432 | 7.020847e-51 | -8.615850e-47 |
| Msa0203010 | Msa0436500 | 0.801852 | 7.404055e-49 | -8.615850e-47 |
| Msa0203010 | Msa0487570 | 0.827763 | 1.306843e-54 | -8.615850e-47 |
| Msa0203010 | Msa0487630 | 0.822401 | 2.415810e-53 | -8.615850e-47 |
| Msa0203010 | Msa0534930 | 0.809427 | 1.902538e-50 | -8.615850e-47 |
| Msa0203010 | Msa0535040 | 0.835758 | 1.392900e-56 | -8.615850e-47 |
| Msa0203010 | Msa0625890 | 0.810924 | 9.051413e-51 | -8.615850e-47 |
| Msa0203010 | Msa0680150 | 0.814909 | 1.211952e-51 | -8.615850e-47 |
| Msa0203010 | Msa0707220 | 0.828781 | 7.427496e-55 | -8.615850e-47 |
| Msa0203010 | Msa0722780 | 0.806280 | 8.882807e-50 | -8.615850e-47 |
| Msa0203010 | Msa0723050 | 0.802707 | 4.936699e-49 | -8.615850e-47 |
| Msa0203010 | Msa0741900 | 0.812739 | 3.643221e-51 | -8.615850e-47 |
| Msa0203010 | Msa0756630 | -0.800905 | 1.157122e-48 | -8.615850e-47 |
| Msa0203010 | Msa0763190 | 0.811587 | 6.496697e-51 | -8.615850e-47 |
| Msa0203010 | Msa0843220 | 0.809711 | 1.652847e-50 | -8.615850e-47 |
| Msa0203010 | Msa0844560 | 0.800282 | 1.550627e-48 | -8.615850e-47 |
| Msa0203010 | Msa0880140 | 0.815378 | 9.531314e-52 | -8.615850e-47 |
| Msa0203010 | Msa0896970 | 0.809938 | 1.477017e-50 | -8.615850e-47 |
| Msa0203010 | Msa0996960 | 0.804173 | 2.453427e-49 | -8.615850e-47 |
| Msa0203010 | Msa1037920 | 0.815496 | 8.973551e-52 | -8.615850e-47 |
| Msa0203010 | Msa1098560 | 0.805589 | 1.240959e-49 | -8.615850e-47 |
| Msa0203010 | Msa1129980 | 0.810019 | 1.419522e-50 | -8.615850e-47 |
| Msa0203010 | Msa1139810 | 0.811459 | 6.928747e-51 | -8.615850e-47 |
| Msa0203010 | Msa1145020 | 0.820321 | 7.297141e-53 | -8.615850e-47 |
| Msa0203010 | Msa1169710 | 0.804303 | 2.305007e-49 | -8.615850e-47 |
| Msa0203010 | Msa1228190 | 0.806480 | 8.059032e-50 | -8.615850e-47 |
| Msa0203010 | Msa1293770 | 0.816305 | 5.921768e-52 | -8.615850e-47 |
| Msa0203010 | Msa1374550 | 0.821866 | 3.214342e-53 | -8.615850e-47 |
| Msa0203010 | Msa1420060 | 0.821362 | 4.203811e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0203010 | MtrunA17_Chr2g0300581 | 91.905 | 210 | 17 | 0 | 1 | 210 | 1 | 210 | 1.82e-141 | 393 |
| Msa0203010 | MtrunA17_Chr2g0300591 | 91.905 | 210 | 17 | 0 | 1 | 210 | 1 | 210 | 1.20e-140 | 391 |
| Msa0203010 | MtrunA17_Chr2g0300561 | 82.381 | 210 | 37 | 0 | 1 | 210 | 1 | 210 | 3.73e-125 | 352 |
| Msa0203010 | MtrunA17_Chr8g0343911 | 63.942 | 208 | 75 | 0 | 3 | 210 | 1 | 208 | 7.10e-92 | 268 |
| Msa0203010 | MtrunA17_Chr8g0343934 | 54.545 | 209 | 91 | 3 | 4 | 210 | 3 | 209 | 7.27e-78 | 232 |
| Msa0203010 | MtrunA17_Chr8g0343954 | 54.922 | 193 | 85 | 2 | 18 | 210 | 19 | 209 | 5.58e-75 | 225 |
| Msa0203010 | MtrunA17_Chr8g0343961 | 53.110 | 209 | 94 | 3 | 4 | 210 | 3 | 209 | 1.79e-74 | 223 |
| Msa0203010 | MtrunA17_Chr8g0343921 | 52.885 | 208 | 92 | 2 | 7 | 210 | 2 | 207 | 3.36e-72 | 218 |
| Msa0203010 | MtrunA17_Chr2g0301611 | 48.585 | 212 | 104 | 4 | 1 | 210 | 1 | 209 | 8.12e-68 | 206 |
| Msa0203010 | MtrunA17_Chr2g0302171 | 50.239 | 209 | 100 | 3 | 4 | 210 | 3 | 209 | 3.47e-67 | 205 |
| Msa0203010 | MtrunA17_Chr2g0313961 | 50.485 | 206 | 99 | 3 | 4 | 209 | 6 | 208 | 2.14e-66 | 203 |
| Msa0203010 | MtrunA17_Chr2g0297241 | 50.000 | 208 | 100 | 3 | 4 | 209 | 3 | 208 | 3.81e-65 | 200 |
| Msa0203010 | MtrunA17_Chr2g0297231 | 49.029 | 206 | 101 | 3 | 4 | 207 | 3 | 206 | 9.87e-65 | 199 |
| Msa0203010 | MtrunA17_Chr3g0084531 | 48.325 | 209 | 104 | 3 | 4 | 210 | 3 | 209 | 1.72e-64 | 198 |
| Msa0203010 | MtrunA17_Chr3g0084511 | 48.077 | 208 | 105 | 3 | 4 | 210 | 3 | 208 | 2.13e-63 | 195 |
| Msa0203010 | MtrunA17_Chr3g0084521 | 48.077 | 208 | 105 | 3 | 4 | 210 | 3 | 208 | 8.14e-63 | 194 |
| Msa0203010 | MtrunA17_Chr8g0344051 | 46.009 | 213 | 111 | 3 | 1 | 210 | 1 | 212 | 1.46e-60 | 188 |
| Msa0203010 | MtrunA17_Chr4g0003361 | 48.077 | 208 | 105 | 3 | 3 | 210 | 1 | 205 | 4.30e-60 | 187 |
| Msa0203010 | MtrunA17_Chr5g0411961 | 45.024 | 211 | 113 | 3 | 1 | 210 | 1 | 209 | 2.56e-58 | 182 |
| Msa0203010 | MtrunA17_Chr8g0344031 | 45.794 | 214 | 109 | 4 | 1 | 210 | 1 | 211 | 4.05e-57 | 179 |
| Msa0203010 | MtrunA17_Chr8g0344021 | 43.192 | 213 | 117 | 3 | 1 | 210 | 1 | 212 | 1.63e-56 | 178 |
| Msa0203010 | MtrunA17_Chr4g0012651 | 46.392 | 194 | 102 | 2 | 17 | 210 | 18 | 209 | 3.47e-56 | 177 |
| Msa0203010 | MtrunA17_Chr3g0115141 | 43.256 | 215 | 112 | 5 | 1 | 210 | 1 | 210 | 4.69e-56 | 177 |
| Msa0203010 | MtrunA17_Chr2g0302541 | 45.128 | 195 | 105 | 2 | 16 | 210 | 17 | 209 | 6.51e-56 | 176 |
| Msa0203010 | MtrunA17_Chr7g0217811 | 45.361 | 194 | 104 | 2 | 17 | 210 | 18 | 209 | 1.66e-55 | 175 |
| Msa0203010 | MtrunA17_Chr8g0344041 | 42.308 | 208 | 118 | 2 | 4 | 210 | 7 | 213 | 4.72e-55 | 174 |
| Msa0203010 | MtrunA17_Chr2g0286171 | 42.396 | 217 | 113 | 5 | 1 | 210 | 1 | 212 | 8.27e-53 | 169 |
| Msa0203010 | MtrunA17_Chr3g0084551 | 43.541 | 209 | 108 | 4 | 4 | 210 | 3 | 203 | 5.93e-50 | 162 |
| Msa0203010 | MtrunA17_Chr2g0292831 | 45.679 | 162 | 83 | 2 | 20 | 179 | 25 | 183 | 1.30e-42 | 142 |
| Msa0203010 | MtrunA17_Chr2g0292901 | 40.426 | 188 | 105 | 3 | 20 | 203 | 26 | 210 | 3.27e-41 | 139 |
| Msa0203010 | MtrunA17_Chr1g0189841 | 39.151 | 212 | 113 | 5 | 8 | 204 | 5 | 215 | 1.33e-38 | 132 |
| Msa0203010 | MtrunA17_Chr1g0210761 | 35.644 | 202 | 125 | 2 | 3 | 204 | 9 | 205 | 3.11e-38 | 131 |
| Msa0203010 | MtrunA17_Chr4g0007051 | 37.559 | 213 | 116 | 5 | 7 | 204 | 4 | 214 | 4.81e-38 | 131 |
| Msa0203010 | MtrunA17_Chr4g0007031 | 37.559 | 213 | 116 | 5 | 7 | 204 | 4 | 214 | 4.97e-38 | 131 |
| Msa0203010 | MtrunA17_Chr5g0419971 | 37.559 | 213 | 116 | 5 | 7 | 204 | 4 | 214 | 4.97e-38 | 131 |
| Msa0203010 | MtrunA17_Chr5g0419981 | 37.559 | 213 | 116 | 5 | 7 | 204 | 4 | 214 | 4.97e-38 | 131 |
| Msa0203010 | MtrunA17_Chr1g0193421 | 39.572 | 187 | 111 | 1 | 23 | 207 | 30 | 216 | 5.42e-38 | 131 |
| Msa0203010 | MtrunA17_Chr7g0271211 | 40.107 | 187 | 110 | 1 | 23 | 207 | 26 | 212 | 6.54e-38 | 130 |
| Msa0203010 | MtrunA17_Chr6g0449731 | 38.140 | 215 | 118 | 5 | 3 | 204 | 1 | 213 | 7.12e-38 | 130 |
| Msa0203010 | MtrunA17_Chr1g0156131 | 40.476 | 168 | 96 | 2 | 40 | 203 | 39 | 206 | 7.81e-38 | 130 |
| Msa0203010 | MtrunA17_Chr6g0449761 | 38.140 | 215 | 118 | 5 | 3 | 204 | 1 | 213 | 1.77e-37 | 130 |
| Msa0203010 | MtrunA17_Chr6g0449771 | 37.674 | 215 | 119 | 5 | 3 | 204 | 1 | 213 | 4.16e-37 | 129 |
| Msa0203010 | MtrunA17_Chr1g0178711 | 40.120 | 167 | 99 | 1 | 40 | 206 | 56 | 221 | 8.75e-37 | 128 |
| Msa0203010 | MtrunA17_Chr2g0285871 | 36.150 | 213 | 119 | 5 | 7 | 204 | 4 | 214 | 2.49e-36 | 127 |
| Msa0203010 | MtrunA17_Chr4g0007041 | 36.574 | 216 | 123 | 5 | 1 | 204 | 1 | 214 | 3.37e-36 | 126 |
| Msa0203010 | MtrunA17_Chr6g0449751 | 40.426 | 188 | 104 | 4 | 23 | 204 | 28 | 213 | 5.92e-36 | 125 |
| Msa0203010 | MtrunA17_Chr2g0292861 | 39.645 | 169 | 97 | 3 | 40 | 203 | 7 | 175 | 1.73e-35 | 123 |
| Msa0203010 | MtrunA17_Chr2g0292911 | 50.427 | 117 | 56 | 1 | 40 | 154 | 7 | 123 | 3.02e-35 | 121 |
| Msa0203010 | MtrunA17_Chr2g0292841 | 39.645 | 169 | 97 | 3 | 40 | 203 | 7 | 175 | 3.71e-35 | 122 |
| Msa0203010 | MtrunA17_Chr1g0193671 | 35.519 | 183 | 116 | 1 | 23 | 203 | 29 | 211 | 1.98e-33 | 119 |
| Msa0203010 | MtrunA17_Chr5g0414971 | 35.450 | 189 | 119 | 2 | 23 | 208 | 33 | 221 | 2.35e-33 | 119 |
| Msa0203010 | MtrunA17_Chr3g0130241 | 36.313 | 179 | 103 | 3 | 1 | 169 | 65 | 242 | 3.10e-30 | 112 |
| Msa0203010 | MtrunA17_Chr6g0449791 | 39.130 | 161 | 91 | 3 | 14 | 169 | 19 | 177 | 4.45e-30 | 110 |
| Msa0203010 | MtrunA17_Chr6g0449781 | 35.829 | 187 | 113 | 4 | 23 | 204 | 28 | 212 | 2.84e-29 | 108 |
| Msa0203010 | MtrunA17_Chr8g0335851 | 36.158 | 177 | 100 | 5 | 4 | 169 | 5 | 179 | 6.81e-29 | 107 |
| Msa0203010 | MtrunA17_Chr3g0084501 | 50.485 | 103 | 49 | 2 | 4 | 106 | 6 | 106 | 7.48e-29 | 104 |
| Msa0203010 | MtrunA17_Chr2g0321601 | 31.884 | 207 | 125 | 5 | 2 | 204 | 7 | 201 | 3.43e-24 | 95.1 |
| Msa0203010 | MtrunA17_Chr2g0321591 | 31.884 | 207 | 125 | 5 | 2 | 204 | 8 | 202 | 5.03e-24 | 94.7 |
| Msa0203010 | MtrunA17_Chr2g0321581 | 31.884 | 207 | 125 | 5 | 2 | 204 | 8 | 202 | 6.15e-24 | 94.4 |
| Msa0203010 | MtrunA17_Chr4g0026191 | 29.524 | 210 | 130 | 7 | 1 | 204 | 6 | 203 | 2.45e-18 | 79.7 |
| Msa0203010 | MtrunA17_Chr4g0026201 | 33.077 | 130 | 86 | 1 | 76 | 204 | 74 | 203 | 3.84e-18 | 79.0 |
| Msa0203010 | MtrunA17_Chr2g0327651 | 29.703 | 101 | 69 | 2 | 43 | 142 | 6 | 105 | 2.31e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0203010 | AT5G20630.1 | 64.286 | 210 | 74 | 1 | 1 | 209 | 1 | 210 | 4.66e-94 | 273 |
| Msa0203010 | AT1G72610.1 | 62.500 | 208 | 78 | 0 | 3 | 210 | 1 | 208 | 2.98e-86 | 254 |
| Msa0203010 | AT5G39160.3 | 42.632 | 190 | 101 | 3 | 23 | 207 | 30 | 216 | 5.99e-42 | 141 |
| Msa0203010 | AT3G04200.1 | 43.979 | 191 | 101 | 3 | 23 | 207 | 33 | 223 | 1.01e-41 | 141 |
| Msa0203010 | AT5G39160.1 | 42.932 | 191 | 103 | 3 | 23 | 207 | 30 | 220 | 4.28e-41 | 139 |
| Msa0203010 | AT5G39190.1 | 42.932 | 191 | 103 | 3 | 23 | 207 | 30 | 220 | 7.59e-41 | 139 |
| Msa0203010 | AT5G39130.1 | 42.408 | 191 | 104 | 3 | 23 | 207 | 30 | 220 | 2.05e-40 | 137 |
| Msa0203010 | AT1G18980.1 | 40.394 | 203 | 116 | 3 | 3 | 203 | 16 | 215 | 4.85e-40 | 136 |
| Msa0203010 | AT1G18970.1 | 39.614 | 207 | 119 | 3 | 1 | 203 | 11 | 215 | 9.06e-40 | 135 |
| Msa0203010 | AT3G62020.1 | 36.585 | 205 | 120 | 3 | 9 | 203 | 8 | 212 | 2.22e-39 | 135 |
| Msa0203010 | AT5G39110.1 | 43.085 | 188 | 100 | 4 | 23 | 203 | 30 | 217 | 3.64e-39 | 134 |
| Msa0203010 | AT5G38960.1 | 41.837 | 196 | 99 | 6 | 23 | 207 | 32 | 223 | 9.45e-39 | 133 |
| Msa0203010 | AT5G39120.1 | 39.623 | 212 | 119 | 5 | 1 | 203 | 5 | 216 | 1.09e-38 | 133 |
| Msa0203010 | AT1G02335.1 | 35.122 | 205 | 131 | 1 | 5 | 207 | 12 | 216 | 1.24e-38 | 133 |
| Msa0203010 | AT3G04150.1 | 40.513 | 195 | 108 | 4 | 23 | 210 | 32 | 225 | 7.45e-38 | 131 |
| Msa0203010 | AT3G05950.1 | 42.553 | 188 | 100 | 4 | 23 | 203 | 32 | 218 | 8.75e-38 | 131 |
| Msa0203010 | AT5G39150.1 | 38.785 | 214 | 120 | 5 | 1 | 203 | 3 | 216 | 1.89e-37 | 130 |
| Msa0203010 | AT5G61750.1 | 39.665 | 179 | 92 | 3 | 1 | 169 | 1 | 173 | 3.25e-37 | 129 |
| Msa0203010 | AT5G39180.1 | 38.785 | 214 | 120 | 5 | 1 | 203 | 3 | 216 | 3.92e-37 | 129 |
| Msa0203010 | AT3G04150.2 | 40.782 | 179 | 101 | 2 | 37 | 210 | 60 | 238 | 4.12e-37 | 129 |
| Msa0203010 | AT1G09560.1 | 43.503 | 177 | 98 | 1 | 8 | 184 | 17 | 191 | 6.57e-37 | 128 |
| Msa0203010 | AT3G04190.1 | 43.902 | 164 | 86 | 3 | 23 | 181 | 32 | 194 | 9.21e-37 | 128 |
| Msa0203010 | AT3G04180.1 | 44.848 | 165 | 83 | 5 | 23 | 181 | 32 | 194 | 5.91e-36 | 126 |
| Msa0203010 | AT3G62020.2 | 37.647 | 170 | 103 | 2 | 37 | 203 | 14 | 183 | 8.23e-36 | 125 |
| Msa0203010 | AT5G38940.1 | 44.371 | 151 | 80 | 2 | 23 | 169 | 32 | 182 | 2.94e-35 | 124 |
| Msa0203010 | AT5G26700.1 | 35.644 | 202 | 124 | 3 | 3 | 203 | 10 | 206 | 3.52e-35 | 124 |
| Msa0203010 | AT5G38940.2 | 44.371 | 151 | 80 | 2 | 23 | 169 | 56 | 206 | 5.44e-35 | 124 |
| Msa0203010 | AT3G04170.1 | 40.838 | 191 | 102 | 6 | 23 | 206 | 32 | 218 | 1.11e-34 | 123 |
| Msa0203010 | AT5G39160.2 | 42.331 | 163 | 89 | 2 | 50 | 207 | 36 | 198 | 1.66e-34 | 122 |
| Msa0203010 | AT5G38930.1 | 44.371 | 151 | 80 | 2 | 23 | 169 | 32 | 182 | 2.21e-34 | 122 |
| Msa0203010 | AT5G39190.2 | 42.331 | 163 | 89 | 2 | 50 | 207 | 36 | 198 | 2.46e-34 | 121 |
| Msa0203010 | AT3G10080.1 | 37.037 | 189 | 113 | 2 | 21 | 204 | 30 | 217 | 3.49e-34 | 122 |
| Msa0203010 | AT3G05930.1 | 37.441 | 211 | 123 | 4 | 4 | 207 | 5 | 213 | 1.12e-33 | 120 |
| Msa0203010 | AT3G10080.2 | 37.037 | 189 | 113 | 2 | 21 | 204 | 101 | 288 | 1.47e-33 | 122 |
| Msa0203010 | AT5G38910.1 | 40.488 | 205 | 102 | 7 | 14 | 203 | 17 | 216 | 1.57e-33 | 120 |
| Msa0203010 | AT4G14630.1 | 38.298 | 188 | 109 | 3 | 23 | 203 | 32 | 219 | 2.68e-33 | 119 |
| Msa0203010 | AT1G10460.1 | 37.079 | 178 | 104 | 4 | 37 | 208 | 42 | 217 | 5.94e-32 | 115 |
| Msa0203010 | AT1G74820.1 | 39.375 | 160 | 93 | 2 | 1 | 158 | 18 | 175 | 5.85e-31 | 113 |
| Msa0203010 | AT5G38910.2 | 31.925 | 213 | 90 | 8 | 4 | 203 | 9 | 179 | 2.06e-15 | 71.6 |
Find 47 sgRNAs with CRISPR-Local
Find 52 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAACGACCAACATTAATT+TGG | 0.178448 | 2_1:-26204591 | None:intergenic |
| TAATCCTCGTTTCCAGATAT+TGG | 0.294879 | 2_1:+26204645 | Msa0203010:CDS |
| GAAGTGTTCGTTGTTATTAA+AGG | 0.300904 | 2_1:+26204469 | Msa0203010:CDS |
| ACAAAGCGTAATCCAATATC+TGG | 0.309210 | 2_1:-26204657 | None:intergenic |
| AAGAAGCTTAAGCGTATTCT+TGG | 0.334205 | 2_1:+26204742 | Msa0203010:CDS |
| GAATATCCAGCCGGGCCATT+TGG | 0.346876 | 2_1:-26204238 | None:intergenic |
| ATAATGTTTGTGGTGTTTCC+AGG | 0.358433 | 2_1:-26204319 | None:intergenic |
| GTTTGTGGTGTTTCCAGGTT+TGG | 0.365839 | 2_1:-26204314 | None:intergenic |
| GCATTTGACGCACAATTTCC+CGG | 0.369797 | 2_1:+26204361 | Msa0203010:CDS |
| GCACAATTTCCCGGTGTAAA+CGG | 0.386040 | 2_1:+26204370 | Msa0203010:CDS |
| TTTCCCGGTGTAAACGGTCT+TGG | 0.446321 | 2_1:+26204376 | Msa0203010:CDS |
| AATGCACCAAATGGCCCGGC+TGG | 0.461203 | 2_1:+26204232 | Msa0203010:CDS |
| TGGTGTTTCCAGGTTTGGCT+AGG | 0.466107 | 2_1:-26204309 | None:intergenic |
| TCACACACACCCCGGTGCTT+CGG | 0.471434 | 2_1:+26204447 | Msa0203010:CDS |
| GGCTAAATCTAAACGCGCAA+TGG | 0.477631 | 2_1:-26204404 | None:intergenic |
| ATTAAAGGAACAATTAGTGC+TGG | 0.479341 | 2_1:+26204484 | Msa0203010:CDS |
| AACGAACACTTCCGAAGCAC+CGG | 0.491763 | 2_1:-26204458 | None:intergenic |
| AGCGGCTTTGATAATGTTTG+TGG | 0.500309 | 2_1:-26204329 | None:intergenic |
| AAGCGTATTCTTGGAGGGAG+TGG | 0.501763 | 2_1:+26204751 | Msa0203010:CDS |
| AAGCTTAAGCGTATTCTTGG+AGG | 0.505606 | 2_1:+26204745 | Msa0203010:CDS |
| TACCACGGCCTAGCCAAACC+TGG | 0.511494 | 2_1:+26204301 | Msa0203010:CDS |
| TTGCATTTCCAAATTAATGT+TGG | 0.515849 | 2_1:+26204583 | Msa0203010:CDS |
| GCAGATTACAATGCACCAAA+TGG | 0.532463 | 2_1:+26204223 | Msa0203010:CDS |
| ACGAACACTTCCGAAGCACC+GGG | 0.547731 | 2_1:-26204457 | None:intergenic |
| TTCCAGGTTTGGCTAGGCCG+TGG | 0.564543 | 2_1:-26204303 | None:intergenic |
| AAGGTAAACAACATTGTCAG+AGG | 0.569703 | 2_1:-26204515 | None:intergenic |
| TTACAATGCACCAAATGGCC+CGG | 0.571769 | 2_1:+26204228 | Msa0203010:CDS |
| AGCTTAAGCGTATTCTTGGA+GGG | 0.573517 | 2_1:+26204746 | Msa0203010:CDS |
| CGTTTAGATTTAGCCGTCGG+TGG | 0.577924 | 2_1:+26204412 | Msa0203010:CDS |
| ATTCCAAGACCGTTTACACC+GGG | 0.600502 | 2_1:-26204379 | None:intergenic |
| TGGAAATGCAACAATCCTTG+TGG | 0.601071 | 2_1:-26204571 | None:intergenic |
| GGTTTGCAAGAATATCCAGC+CGG | 0.602375 | 2_1:-26204247 | None:intergenic |
| GGGAAATTGTGCGTCAAATG+CGG | 0.602752 | 2_1:-26204359 | None:intergenic |
| TACCTTAAAACACTTCACAA+AGG | 0.608858 | 2_1:+26204532 | Msa0203010:CDS |
| GTTGCAGTAATGAACTCCGT+TGG | 0.609003 | 2_1:-26204694 | None:intergenic |
| TGCTACGCAGAAATCTACTA+CGG | 0.612239 | 2_1:-26204203 | None:intergenic |
| GCGCGTTTAGATTTAGCCGT+CGG | 0.614388 | 2_1:+26204409 | Msa0203010:CDS |
| GATTCCAAGACCGTTTACAC+CGG | 0.616073 | 2_1:-26204380 | None:intergenic |
| GCACCGGGGTGTGTGTGAAG+TGG | 0.621649 | 2_1:-26204442 | None:intergenic |
| GTTTGCAAGAATATCCAGCC+GGG | 0.622259 | 2_1:-26204246 | None:intergenic |
| GTGGTAGACAAAGTCATTCG+CGG | 0.636169 | 2_1:-26204284 | None:intergenic |
| AAGTGGAACAACACCACCGA+CGG | 0.642171 | 2_1:-26204425 | None:intergenic |
| GTCAAATGCGGTGCTAACAG+CGG | 0.644054 | 2_1:-26204347 | None:intergenic |
| GTTCCACTTCACACACACCC+CGG | 0.667019 | 2_1:+26204439 | Msa0203010:CDS |
| TAATCCAATATCTGGAAACG+AGG | 0.691373 | 2_1:-26204649 | None:intergenic |
| GCGAATGACTTTGTCTACCA+CGG | 0.707890 | 2_1:+26204286 | Msa0203010:CDS |
| CGAACACTTCCGAAGCACCG+GGG | 0.778153 | 2_1:-26204456 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTGCATTTCCAAATTAATGT+TGG | + | chr2_1:26204583-26204602 | Msa0203010:CDS | 25.0% |
| ! | GAAGTGTTCGTTGTTATTAA+AGG | + | chr2_1:26204469-26204488 | Msa0203010:CDS | 30.0% |
| ATTAAAGGAACAATTAGTGC+TGG | + | chr2_1:26204484-26204503 | Msa0203010:CDS | 30.0% | |
| TACCTTAAAACACTTCACAA+AGG | + | chr2_1:26204532-26204551 | Msa0203010:CDS | 30.0% | |
| TAGAACGACCAACATTAATT+TGG | - | chr2_1:26204594-26204613 | None:intergenic | 30.0% | |
| ATAATGTTTGTGGTGTTTCC+AGG | - | chr2_1:26204322-26204341 | None:intergenic | 35.0% | |
| AAGGTAAACAACATTGTCAG+AGG | - | chr2_1:26204518-26204537 | None:intergenic | 35.0% | |
| !! | CACCTTTGTGAAGTGTTTTA+AGG | - | chr2_1:26204537-26204556 | None:intergenic | 35.0% |
| ! | GACGTTATGATTTTTCCACA+AGG | + | chr2_1:26204556-26204575 | Msa0203010:CDS | 35.0% |
| TAATCCTCGTTTCCAGATAT+TGG | + | chr2_1:26204645-26204664 | Msa0203010:CDS | 35.0% | |
| TAATCCAATATCTGGAAACG+AGG | - | chr2_1:26204652-26204671 | None:intergenic | 35.0% | |
| ACAAAGCGTAATCCAATATC+TGG | - | chr2_1:26204660-26204679 | None:intergenic | 35.0% | |
| ! | GTTTGAAAGCGATTTTCCAA+CGG | + | chr2_1:26204678-26204697 | Msa0203010:CDS | 35.0% |
| AAGAAGCTTAAGCGTATTCT+TGG | + | chr2_1:26204742-26204761 | Msa0203010:CDS | 35.0% | |
| TGCTACGCAGAAATCTACTA+CGG | - | chr2_1:26204206-26204225 | None:intergenic | 40.0% | |
| GCAGATTACAATGCACCAAA+TGG | + | chr2_1:26204223-26204242 | Msa0203010:CDS | 40.0% | |
| !!! | TCATTCGCGGTTACTTTTGA+TGG | - | chr2_1:26204274-26204293 | None:intergenic | 40.0% |
| !! | AGCGGCTTTGATAATGTTTG+TGG | - | chr2_1:26204332-26204351 | None:intergenic | 40.0% |
| TGGAAATGCAACAATCCTTG+TGG | - | chr2_1:26204574-26204593 | None:intergenic | 40.0% | |
| AAGCTTAAGCGTATTCTTGG+AGG | + | chr2_1:26204745-26204764 | Msa0203010:CDS | 40.0% | |
| AGCTTAAGCGTATTCTTGGA+GGG | + | chr2_1:26204746-26204765 | Msa0203010:CDS | 40.0% | |
| TTACAATGCACCAAATGGCC+CGG | + | chr2_1:26204228-26204247 | Msa0203010:CDS | 45.0% | |
| GTTTGCAAGAATATCCAGCC+GGG | - | chr2_1:26204249-26204268 | None:intergenic | 45.0% | |
| GGTTTGCAAGAATATCCAGC+CGG | - | chr2_1:26204250-26204269 | None:intergenic | 45.0% | |
| !!! | TTCGCGGTTACTTTTGATGG+TGG | - | chr2_1:26204271-26204290 | None:intergenic | 45.0% |
| GTGGTAGACAAAGTCATTCG+CGG | - | chr2_1:26204287-26204306 | None:intergenic | 45.0% | |
| GCGAATGACTTTGTCTACCA+CGG | + | chr2_1:26204286-26204305 | Msa0203010:CDS | 45.0% | |
| GTTTGTGGTGTTTCCAGGTT+TGG | - | chr2_1:26204317-26204336 | None:intergenic | 45.0% | |
| GGGAAATTGTGCGTCAAATG+CGG | - | chr2_1:26204362-26204381 | None:intergenic | 45.0% | |
| GCATTTGACGCACAATTTCC+CGG | + | chr2_1:26204361-26204380 | Msa0203010:CDS | 45.0% | |
| GCACAATTTCCCGGTGTAAA+CGG | + | chr2_1:26204370-26204389 | Msa0203010:CDS | 45.0% | |
| ATTCCAAGACCGTTTACACC+GGG | - | chr2_1:26204382-26204401 | None:intergenic | 45.0% | |
| GATTCCAAGACCGTTTACAC+CGG | - | chr2_1:26204383-26204402 | None:intergenic | 45.0% | |
| GGCTAAATCTAAACGCGCAA+TGG | - | chr2_1:26204407-26204426 | None:intergenic | 45.0% | |
| GTTGCAGTAATGAACTCCGT+TGG | - | chr2_1:26204697-26204716 | None:intergenic | 45.0% | |
| TGGTGTTTCCAGGTTTGGCT+AGG | - | chr2_1:26204312-26204331 | None:intergenic | 50.0% | |
| ! | GTCAAATGCGGTGCTAACAG+CGG | - | chr2_1:26204350-26204369 | None:intergenic | 50.0% |
| TTTCCCGGTGTAAACGGTCT+TGG | + | chr2_1:26204376-26204395 | Msa0203010:CDS | 50.0% | |
| GCGCGTTTAGATTTAGCCGT+CGG | + | chr2_1:26204409-26204428 | Msa0203010:CDS | 50.0% | |
| CGTTTAGATTTAGCCGTCGG+TGG | + | chr2_1:26204412-26204431 | Msa0203010:CDS | 50.0% | |
| AAGTGGAACAACACCACCGA+CGG | - | chr2_1:26204428-26204447 | None:intergenic | 50.0% | |
| AACGAACACTTCCGAAGCAC+CGG | - | chr2_1:26204461-26204480 | None:intergenic | 50.0% | |
| AAGCGTATTCTTGGAGGGAG+TGG | + | chr2_1:26204751-26204770 | Msa0203010:CDS | 50.0% | |
| GAATATCCAGCCGGGCCATT+TGG | - | chr2_1:26204241-26204260 | None:intergenic | 55.0% | |
| GTTCCACTTCACACACACCC+CGG | + | chr2_1:26204439-26204458 | Msa0203010:CDS | 55.0% | |
| ! | ACGAACACTTCCGAAGCACC+GGG | - | chr2_1:26204460-26204479 | None:intergenic | 55.0% |
| AATGCACCAAATGGCCCGGC+TGG | + | chr2_1:26204232-26204251 | Msa0203010:CDS | 60.0% | |
| TACCACGGCCTAGCCAAACC+TGG | + | chr2_1:26204301-26204320 | Msa0203010:CDS | 60.0% | |
| TTCCAGGTTTGGCTAGGCCG+TGG | - | chr2_1:26204306-26204325 | None:intergenic | 60.0% | |
| TCACACACACCCCGGTGCTT+CGG | + | chr2_1:26204447-26204466 | Msa0203010:CDS | 60.0% | |
| !! | CGAACACTTCCGAAGCACCG+GGG | - | chr2_1:26204459-26204478 | None:intergenic | 60.0% |
| GCACCGGGGTGTGTGTGAAG+TGG | - | chr2_1:26204445-26204464 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 26204145 | 26204777 | 26204145 | ID=Msa0203010;Name=Msa0203010 |
| chr2_1 | mRNA | 26204145 | 26204777 | 26204145 | ID=Msa0203010-mRNA-1;Parent=Msa0203010;Name=Msa0203010-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|-1|0|1|-1|1|1|0|210 |
| chr2_1 | exon | 26204145 | 26204777 | 26204145 | ID=Msa0203010-mRNA-1:exon:9865;Parent=Msa0203010-mRNA-1 |
| chr2_1 | CDS | 26204145 | 26204777 | 26204145 | ID=Msa0203010-mRNA-1:cds;Parent=Msa0203010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
