AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1466530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1466530 MtrunA17_Chr1g0155221 100.000 118 0 0 1 118 372 489 3.66e-78 238
Msa1466530 MtrunA17_Chr5g0404181 71.930 114 32 0 5 118 19 132 6.38e-54 165
Msa1466530 MtrunA17_Chr8g0373181 68.696 115 36 0 4 118 372 486 1.14e-49 164
Msa1466530 MtrunA17_Chr8g0373191 59.649 114 46 0 4 117 344 457 3.21e-41 141
Msa1466530 MtrunA17_Chr7g0273261 54.545 99 45 0 16 114 136 234 3.75e-35 121
Msa1466530 MtrunA17_Chr7g0259221 50.442 113 56 0 2 114 360 472 6.47e-35 125
Msa1466530 MtrunA17_Chr7g0273281 60.606 99 39 0 16 114 394 492 1.95e-34 124
Msa1466530 MtrunA17_Chr7g0259471 48.673 113 58 0 2 114 358 470 3.03e-32 117
Msa1466530 MtrunA17_Chr4g0066581 49.558 113 57 0 2 114 371 483 5.87e-32 117
Msa1466530 MtrunA17_Chr2g0286721 53.061 98 46 0 17 114 383 480 4.44e-29 109
Msa1466530 MtrunA17_Chr7g0221631 54.795 73 33 0 12 84 45 117 1.06e-23 88.2
Msa1466530 MtrunA17_Chr7g0259451 62.745 51 19 0 33 83 1 51 9.25e-17 68.6
Msa1466530 MtrunA17_Chr8g0376631 32.787 122 70 3 2 118 439 553 4.66e-15 69.7
Msa1466530 MtrunA17_Chr3g0121674 36.735 98 61 1 17 113 185 282 1.45e-14 67.8
Msa1466530 MtrunA17_Chr5g0434251 30.894 123 73 3 1 118 25 140 3.00e-14 65.1
Msa1466530 MtrunA17_Chr4g0021771 37.363 91 56 1 29 118 413 503 3.24e-14 67.4
Msa1466530 MtrunA17_Chr2g0303731 33.010 103 68 1 17 118 452 554 1.30e-13 65.9
Msa1466530 MtrunA17_Chr8g0376611 31.776 107 64 2 17 118 382 484 2.59e-13 64.7
Msa1466530 MtrunA17_Chr5g0419321 40.196 102 60 1 17 117 634 735 3.21e-13 64.7
Msa1466530 MtrunA17_Chr2g0282031 33.962 106 66 2 14 118 399 501 9.13e-13 63.2
Msa1466530 MtrunA17_Chr3g0146061 37.255 102 63 1 17 117 626 727 1.06e-12 63.2
Msa1466530 MtrunA17_Chr4g0039651 33.333 114 70 2 2 114 389 497 1.43e-12 62.8
Msa1466530 MtrunA17_Chr3g0144261 36.275 102 64 1 17 117 616 717 9.09e-12 60.5
Msa1466530 MtrunA17_Chr1g0213611 30.097 103 71 1 17 118 427 529 1.05e-11 60.5
Msa1466530 MtrunA17_Chr1g0213631 33.333 99 65 1 17 114 331 429 1.07e-11 60.1
Msa1466530 MtrunA17_Chr2g0290181 30.702 114 69 5 12 118 447 557 1.70e-11 59.7
Msa1466530 MtrunA17_Chr5g0407441 38.235 102 62 1 17 117 608 709 1.79e-11 59.7
Msa1466530 MtrunA17_Chr4g0004821 35.644 101 60 2 17 114 371 469 2.28e-11 59.3
Msa1466530 MtrunA17_Chr8g0376601 34.783 92 59 1 17 107 450 541 3.44e-11 58.9
Msa1466530 MtrunA17_Chr5g0434261 34.783 92 59 1 17 107 212 303 3.55e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1466530 AT1G75220.1 75.862 116 28 0 3 118 372 487 1.39e-51 169
Msa1466530 AT1G19450.1 72.414 116 32 0 3 118 373 488 7.97e-49 162
Msa1466530 AT2G48020.2 51.754 114 55 0 1 114 345 458 1.35e-34 124
Msa1466530 AT2G48020.1 51.754 114 55 0 1 114 345 458 1.35e-34 124
Msa1466530 AT5G18840.1 57.843 102 43 0 17 118 378 479 1.73e-33 121
Msa1466530 AT3G05150.1 50.877 114 56 0 1 114 353 466 2.32e-33 120
Msa1466530 AT3G05150.3 50.877 114 56 0 1 114 353 466 2.32e-33 120
Msa1466530 AT3G05150.2 50.877 114 56 0 1 114 353 466 2.50e-33 121
Msa1466530 AT1G54730.5 55.140 107 48 0 8 114 335 441 6.57e-33 119
Msa1466530 AT1G54730.2 55.140 107 48 0 8 114 356 462 8.88e-33 119
Msa1466530 AT1G08900.5 43.860 114 64 0 1 114 300 413 2.33e-30 112
Msa1466530 AT1G08900.3 43.860 114 64 0 1 114 334 447 3.33e-30 112
Msa1466530 AT1G08900.1 43.860 114 64 0 1 114 342 455 3.43e-30 112
Msa1466530 AT1G08900.2 43.860 114 64 0 1 114 342 455 3.43e-30 112
Msa1466530 AT1G08890.1 43.478 115 65 0 1 115 344 458 1.04e-28 108
Msa1466530 AT1G08920.2 47.222 108 53 1 11 114 362 469 2.05e-28 107
Msa1466530 AT1G08930.1 46.296 108 54 1 11 114 381 488 2.09e-28 107
Msa1466530 AT1G08930.2 46.296 108 54 1 11 114 381 488 2.09e-28 107
Msa1466530 AT1G08920.1 47.222 108 53 1 11 114 355 462 2.10e-28 107
Msa1466530 AT3G05400.2 50.515 97 48 0 21 117 343 439 7.21e-26 100
Msa1466530 AT3G05400.1 50.515 97 48 0 21 117 363 459 7.86e-26 100
Msa1466530 AT3G05155.1 46.465 99 53 0 17 115 358 456 2.27e-24 96.3
Msa1466530 AT3G20460.1 45.745 94 51 0 21 114 390 483 3.39e-24 95.9
Msa1466530 AT4G04750.3 47.059 102 54 0 16 117 414 515 6.75e-24 95.5
Msa1466530 AT4G04750.1 47.059 102 54 0 16 117 370 471 8.60e-24 94.7
Msa1466530 AT4G04750.2 47.059 102 54 0 16 117 370 471 8.60e-24 94.7
Msa1466530 AT4G04760.3 44.118 102 57 0 16 117 307 408 4.50e-22 89.7
Msa1466530 AT4G04760.2 44.118 102 57 0 16 117 363 464 5.65e-22 89.7
Msa1466530 AT4G04760.1 44.118 102 57 0 16 117 366 467 6.05e-22 89.7
Msa1466530 AT3G05160.3 47.674 86 45 0 29 114 317 402 6.35e-22 89.4
Msa1466530 AT3G05160.2 47.674 86 45 0 29 114 317 402 6.35e-22 89.4
Msa1466530 AT3G05160.1 47.674 86 45 0 29 114 366 451 7.96e-22 89.4
Msa1466530 AT5G27360.2 48.837 86 44 0 29 114 276 361 2.10e-21 87.4
Msa1466530 AT5G27360.5 48.837 86 44 0 29 114 276 361 2.10e-21 87.4
Msa1466530 AT5G27360.1 48.837 86 44 0 29 114 380 465 2.58e-21 87.8
Msa1466530 AT5G27360.3 48.837 86 44 0 29 114 428 513 2.91e-21 87.8
Msa1466530 AT3G05165.3 44.828 87 48 0 28 114 374 460 6.85e-21 86.7
Msa1466530 AT3G05165.2 44.828 87 48 0 28 114 374 460 6.85e-21 86.7
Msa1466530 AT3G05165.1 44.828 87 48 0 28 114 374 460 6.85e-21 86.7
Msa1466530 AT5G27350.1 44.444 99 55 0 16 114 363 461 3.60e-20 84.7
Msa1466530 AT1G08900.4 36.957 92 58 0 1 92 342 433 2.52e-19 82.4
Msa1466530 AT1G54730.4 50.667 75 37 0 8 82 335 409 4.27e-18 78.6
Msa1466530 AT1G54730.3 50.667 75 37 0 8 82 356 430 5.50e-18 78.6
Msa1466530 AT1G08920.3 45.570 79 39 1 11 85 355 433 1.61e-16 74.3
Msa1466530 AT1G30220.1 35.246 122 67 3 2 118 443 557 6.19e-15 70.1
Msa1466530 AT3G51490.3 40.566 106 62 1 13 117 565 670 6.62e-15 69.7
Msa1466530 AT3G51490.2 40.566 106 62 1 13 117 615 720 6.73e-15 69.7
Msa1466530 AT3G51490.1 40.566 106 62 1 13 117 607 712 6.93e-15 69.7
Msa1466530 AT2G20780.1 36.792 106 63 2 14 118 399 501 2.55e-14 68.2
Msa1466530 AT2G20780.2 36.792 106 63 2 14 118 341 443 2.83e-14 68.2
Msa1466530 AT2G43330.1 33.043 115 73 2 5 118 369 480 4.20e-14 67.4
Msa1466530 AT4G35300.5 36.538 104 65 1 15 117 426 529 5.56e-14 67.0
Msa1466530 AT2G35740.1 36.170 94 59 1 26 118 467 560 1.78e-13 65.9
Msa1466530 AT4G16480.2 31.915 94 63 1 26 118 468 561 5.47e-12 61.6
Msa1466530 AT4G16480.3 31.915 94 63 1 26 118 468 561 5.47e-12 61.6
Msa1466530 AT4G16480.1 31.915 94 63 1 26 118 468 561 5.47e-12 61.6
Msa1466530 AT3G05165.6 41.667 60 35 0 28 87 374 433 5.98e-12 61.2
Msa1466530 AT4G35300.4 35.849 106 67 1 13 117 621 726 7.73e-12 61.2
Msa1466530 AT4G35300.8 35.849 106 67 1 13 117 621 726 7.73e-12 61.2
Msa1466530 AT4G35300.6 35.849 106 67 1 13 117 621 726 7.73e-12 61.2
Msa1466530 AT4G35300.11 35.849 106 67 1 13 117 621 726 7.73e-12 61.2
Msa1466530 AT4G35300.1 35.849 106 67 1 13 117 621 726 7.73e-12 61.2
Msa1466530 AT4G35300.10 35.849 106 67 1 13 117 621 726 7.73e-12 61.2
Msa1466530 AT4G35300.7 35.849 106 67 1 13 117 621 726 7.73e-12 61.2
Msa1466530 AT4G35300.9 35.849 106 67 1 13 117 611 716 8.43e-12 60.8
Msa1466530 AT4G35300.2 35.849 106 67 1 13 117 611 716 8.43e-12 60.8
Msa1466530 AT4G35300.3 35.849 106 67 1 13 117 611 716 8.43e-12 60.8
Msa1466530 AT3G03090.1 34.343 99 64 1 17 114 401 499 3.30e-11 59.3
Msa1466530 AT1G20840.2 37.864 103 61 2 17 117 618 719 6.10e-11 58.5
Msa1466530 AT1G20840.1 37.864 103 61 2 17 117 618 719 6.10e-11 58.5

Find 31 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGTAGGATTTGTTGCTATT+TGG 0.211911 tig0047458:-269 Msa1466530:CDS
TTGCTCTTGGATTGGAGTTC+TGG 0.226307 tig0047458:-413 Msa1466530:CDS
AGTAGGATTTGTTGCTATTT+GGG 0.245570 tig0047458:-268 Msa1466530:CDS
TCAGCAGATTCTTCTTTATA+CGG 0.249477 tig0047458:-942 Msa1466530:CDS
CATGGTTATTGCATTCTCTT+TGG 0.261913 tig0047458:-790 Msa1466530:CDS
ATGGTTATTGCATTCTCTTT+GGG 0.334752 tig0047458:-789 Msa1466530:CDS
GGCAAGTGTTGCAAAACTTC+CGG 0.357454 tig0047458:+475 Msa1466530:intergenic
ATTGCATTCTCTTTGGGAAT+GGG 0.387140 tig0047458:-783 Msa1466530:CDS
GCAAGGCCTTTGATGTTAAT+CGG 0.388439 tig0047458:+497 Msa1466530:intergenic
CGGGATATTGAGCCTCTTAT+CGG 0.398563 tig0047458:-922 Msa1466530:CDS
CAGCAAATTTGCTCTTGGAT+TGG 0.399353 tig0047458:-421 Msa1466530:CDS
TATTGCATTCTCTTTGGGAA+TGG 0.407792 tig0047458:-784 Msa1466530:CDS
ATTAACATCAAAGGCCTTGC+CGG 0.413262 tig0047458:-494 Msa1466530:CDS
ATTGACAGCAAATTTGCTCT+TGG 0.418489 tig0047458:-426 Msa1466530:CDS
CAGCAGATTCTTCTTTATAC+GGG 0.467396 tig0047458:-941 Msa1466530:CDS
CAACTCCGGCCACCGATAAG+AGG 0.473025 tig0047458:+910 Msa1466530:intergenic
TATTTGGGTCCCTGAAACAA+AGG 0.474222 tig0047458:-253 Msa1466530:CDS
GTTGTATGTGCTTTCACAGT+AGG 0.486742 tig0047458:-285 Msa1466530:CDS
CAACCACGAAAAGAACCAAT+TGG 0.505750 tig0047458:+454 Msa1466530:intergenic
CTCTTGGATTGGAGTTCTGG+AGG 0.509560 tig0047458:-410 Msa1466530:intron
CTTATCGGTGGCCGGAGTTG+TGG 0.527718 tig0047458:-907 Msa1466530:intron
ACCTCAGACATTATAATCCA+TGG 0.541836 tig0047458:+753 Msa1466530:intergenic
TTGAGCCTCTTATCGGTGGC+CGG 0.548932 tig0047458:-915 Msa1466530:CDS
ATTTGGGTCCCTGAAACAAA+GGG 0.559564 tig0047458:-252 Msa1466530:CDS
ATTCTTCCGATTAACATCAA+AGG 0.589346 tig0047458:-503 Msa1466530:CDS
TGGGAATGGGAGCTATGCCA+TGG 0.590773 tig0047458:-770 Msa1466530:CDS
GCCATGGATTATAATGTCTG+AGG 0.630227 tig0047458:-754 Msa1466530:intron
TACAACTGTATATATAGTGA+AGG 0.630572 tig0047458:+302 Msa1466530:intergenic
GTGTTGCAAAACTTCCGGCA+AGG 0.646676 tig0047458:+480 Msa1466530:intergenic
ATATGTACATACCACAACTC+CGG 0.655357 tig0047458:+896 Msa1466530:intergenic
GATATTGAGCCTCTTATCGG+TGG 0.663285 tig0047458:-919 Msa1466530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTATACAAATGATATTTT+TGG - tig0047458:309-328 Msa1466530:intron 15.0%
!!! TTTAGATTTGTTTATAATGT+CGG - tig0047458:548-567 Msa1466530:intron 15.0%
!!! CATTATACAAATGATATTTT+TGG - tig0047458:309-328 Msa1466530:intron 15.0%
!!! TTTAGATTTGTTTATAATGT+CGG - tig0047458:548-567 Msa1466530:intron 15.0%
!!! ATACAAATGATATTTTTGGT+AGG - tig0047458:313-332 Msa1466530:intron 20.0%
!! TAATATTATCGAAGCATATA+CGG + tig0047458:443-462 Msa1466530:intergenic 20.0%
!!! ATACAAATGATATTTTTGGT+AGG - tig0047458:313-332 Msa1466530:intron 20.0%
!! TAATATTATCGAAGCATATA+CGG + tig0047458:443-462 Msa1466530:intergenic 20.0%
! ATAAACTTCCAATTTCTTTC+AGG - tig0047458:355-374 Msa1466530:intron 25.0%
! CACATTATAATATACAAGAG+GGG + tig0047458:491-510 Msa1466530:intergenic 25.0%
! GCACATTATAATATACAAGA+GGG + tig0047458:492-511 Msa1466530:intergenic 25.0%
!!! AAGCTTTTGAGTTTAATAAC+CGG + tig0047458:577-596 Msa1466530:intergenic 25.0%
! TACAACTGTATATATAGTGA+AGG + tig0047458:870-889 Msa1466530:intergenic 25.0%
! ATAAACTTCCAATTTCTTTC+AGG - tig0047458:355-374 Msa1466530:intron 25.0%
! CACATTATAATATACAAGAG+GGG + tig0047458:491-510 Msa1466530:intergenic 25.0%
! GCACATTATAATATACAAGA+GGG + tig0047458:492-511 Msa1466530:intergenic 25.0%
!!! AAGCTTTTGAGTTTAATAAC+CGG + tig0047458:577-596 Msa1466530:intergenic 25.0%
! TACAACTGTATATATAGTGA+AGG + tig0047458:870-889 Msa1466530:intergenic 25.0%
TCAGCAGATTCTTCTTTATA+CGG - tig0047458:227-246 Msa1466530:CDS 30.0%
ATGGTTATTGCATTCTCTTT+GGG - tig0047458:380-399 Msa1466530:intron 30.0%
GGCACATTATAATATACAAG+AGG + tig0047458:493-512 Msa1466530:intergenic 30.0%
CCAAGATATTGAAGTGTAAT+CGG - tig0047458:511-530 Msa1466530:intron 30.0%
AAACTCAAAAGCTTCTCAAT+TGG - tig0047458:583-602 Msa1466530:intron 30.0%
ATTCTTCCGATTAACATCAA+AGG - tig0047458:666-685 Msa1466530:intron 30.0%
!! AGTAGGATTTGTTGCTATTT+GGG - tig0047458:901-920 Msa1466530:intron 30.0%
TCAGCAGATTCTTCTTTATA+CGG - tig0047458:227-246 Msa1466530:CDS 30.0%
ATGGTTATTGCATTCTCTTT+GGG - tig0047458:380-399 Msa1466530:intron 30.0%
GGCACATTATAATATACAAG+AGG + tig0047458:493-512 Msa1466530:intergenic 30.0%
CCAAGATATTGAAGTGTAAT+CGG - tig0047458:511-530 Msa1466530:intron 30.0%
AAACTCAAAAGCTTCTCAAT+TGG - tig0047458:583-602 Msa1466530:intron 30.0%
ATTCTTCCGATTAACATCAA+AGG - tig0047458:666-685 Msa1466530:intron 30.0%
!! AGTAGGATTTGTTGCTATTT+GGG - tig0047458:901-920 Msa1466530:intron 30.0%
CAGCAGATTCTTCTTTATAC+GGG - tig0047458:228-247 Msa1466530:CDS 35.0%
ATATGTACATACCACAACTC+CGG + tig0047458:276-295 Msa1466530:intergenic 35.0%
! TTCCAATTTCTTTCAGGTCA+TGG - tig0047458:361-380 Msa1466530:intron 35.0%
AACCATGACCTGAAAGAAAT+TGG + tig0047458:366-385 Msa1466530:intergenic 35.0%
CATGGTTATTGCATTCTCTT+TGG - tig0047458:379-398 Msa1466530:intron 35.0%
! TATTGCATTCTCTTTGGGAA+TGG - tig0047458:385-404 Msa1466530:intron 35.0%
! ATTGCATTCTCTTTGGGAAT+GGG - tig0047458:386-405 Msa1466530:intron 35.0%
ACCTCAGACATTATAATCCA+TGG + tig0047458:419-438 Msa1466530:intergenic 35.0%
CCGATTACACTTCAATATCT+TGG + tig0047458:514-533 Msa1466530:intergenic 35.0%
! TTGTTTATAATGTCGGTGTC+CGG - tig0047458:555-574 Msa1466530:intron 35.0%
! ATTGACAGCAAATTTGCTCT+TGG - tig0047458:743-762 Msa1466530:intron 35.0%
ATAAGAACAAAGGAAGCTTC+TGG + tig0047458:841-860 Msa1466530:intergenic 35.0%
AAGCTTCCTTTGTTCTTATC+AGG - tig0047458:842-861 Msa1466530:intron 35.0%
AAGGTTCCTGATAAGAACAA+AGG + tig0047458:851-870 Msa1466530:intergenic 35.0%
!! CAGTAGGATTTGTTGCTATT+TGG - tig0047458:900-919 Msa1466530:intron 35.0%
!! GAGTTTTTCCCTTTGTTTCA+GGG + tig0047458:928-947 Msa1466530:intergenic 35.0%
!! AGAGTTTTTCCCTTTGTTTC+AGG + tig0047458:929-948 Msa1466530:intergenic 35.0%
CAGCAGATTCTTCTTTATAC+GGG - tig0047458:228-247 Msa1466530:CDS 35.0%
ATATGTACATACCACAACTC+CGG + tig0047458:276-295 Msa1466530:intergenic 35.0%
! TTCCAATTTCTTTCAGGTCA+TGG - tig0047458:361-380 Msa1466530:intron 35.0%
AACCATGACCTGAAAGAAAT+TGG + tig0047458:366-385 Msa1466530:intergenic 35.0%
CATGGTTATTGCATTCTCTT+TGG - tig0047458:379-398 Msa1466530:intron 35.0%
! TATTGCATTCTCTTTGGGAA+TGG - tig0047458:385-404 Msa1466530:intron 35.0%
! ATTGCATTCTCTTTGGGAAT+GGG - tig0047458:386-405 Msa1466530:intron 35.0%
ACCTCAGACATTATAATCCA+TGG + tig0047458:419-438 Msa1466530:intergenic 35.0%
CCGATTACACTTCAATATCT+TGG + tig0047458:514-533 Msa1466530:intergenic 35.0%
! TTGTTTATAATGTCGGTGTC+CGG - tig0047458:555-574 Msa1466530:intron 35.0%
! ATTGACAGCAAATTTGCTCT+TGG - tig0047458:743-762 Msa1466530:intron 35.0%
ATAAGAACAAAGGAAGCTTC+TGG + tig0047458:841-860 Msa1466530:intergenic 35.0%
AAGCTTCCTTTGTTCTTATC+AGG - tig0047458:842-861 Msa1466530:intron 35.0%
AAGGTTCCTGATAAGAACAA+AGG + tig0047458:851-870 Msa1466530:intergenic 35.0%
!! CAGTAGGATTTGTTGCTATT+TGG - tig0047458:900-919 Msa1466530:intron 35.0%
!! GAGTTTTTCCCTTTGTTTCA+GGG + tig0047458:928-947 Msa1466530:intergenic 35.0%
!! AGAGTTTTTCCCTTTGTTTC+AGG + tig0047458:929-948 Msa1466530:intergenic 35.0%
! GCCATGGATTATAATGTCTG+AGG - tig0047458:415-434 Msa1466530:CDS 40.0%
GCAAGGCCTTTGATGTTAAT+CGG + tig0047458:675-694 Msa1466530:intergenic 40.0%
ATTAACATCAAAGGCCTTGC+CGG - tig0047458:675-694 Msa1466530:intron 40.0%
! GTTTTGCAACACTTGCCAAT+TGG - tig0047458:700-719 Msa1466530:intron 40.0%
!! TTGCCAATTGGTTCTTTTCG+TGG - tig0047458:712-731 Msa1466530:intron 40.0%
CAACCACGAAAAGAACCAAT+TGG + tig0047458:718-737 Msa1466530:intergenic 40.0%
! CAGCAAATTTGCTCTTGGAT+TGG - tig0047458:748-767 Msa1466530:intron 40.0%
GTTGTATGTGCTTTCACAGT+AGG - tig0047458:884-903 Msa1466530:intron 40.0%
TATTTGGGTCCCTGAAACAA+AGG - tig0047458:916-935 Msa1466530:CDS 40.0%
ATTTGGGTCCCTGAAACAAA+GGG - tig0047458:917-936 Msa1466530:CDS 40.0%
! GCCATGGATTATAATGTCTG+AGG - tig0047458:415-434 Msa1466530:CDS 40.0%
GCAAGGCCTTTGATGTTAAT+CGG + tig0047458:675-694 Msa1466530:intergenic 40.0%
ATTAACATCAAAGGCCTTGC+CGG - tig0047458:675-694 Msa1466530:intron 40.0%
! GTTTTGCAACACTTGCCAAT+TGG - tig0047458:700-719 Msa1466530:intron 40.0%
!! TTGCCAATTGGTTCTTTTCG+TGG - tig0047458:712-731 Msa1466530:intron 40.0%
CAACCACGAAAAGAACCAAT+TGG + tig0047458:718-737 Msa1466530:intergenic 40.0%
! CAGCAAATTTGCTCTTGGAT+TGG - tig0047458:748-767 Msa1466530:intron 40.0%
GTTGTATGTGCTTTCACAGT+AGG - tig0047458:884-903 Msa1466530:intron 40.0%
TATTTGGGTCCCTGAAACAA+AGG - tig0047458:916-935 Msa1466530:CDS 40.0%
ATTTGGGTCCCTGAAACAAA+GGG - tig0047458:917-936 Msa1466530:CDS 40.0%
CGGGATATTGAGCCTCTTAT+CGG - tig0047458:247-266 Msa1466530:CDS 45.0%
GATATTGAGCCTCTTATCGG+TGG - tig0047458:250-269 Msa1466530:CDS 45.0%
! GGCAAGTGTTGCAAAACTTC+CGG + tig0047458:697-716 Msa1466530:intergenic 45.0%
! TTGCTCTTGGATTGGAGTTC+TGG - tig0047458:756-775 Msa1466530:CDS 45.0%
CGGGATATTGAGCCTCTTAT+CGG - tig0047458:247-266 Msa1466530:CDS 45.0%
GATATTGAGCCTCTTATCGG+TGG - tig0047458:250-269 Msa1466530:CDS 45.0%
! GGCAAGTGTTGCAAAACTTC+CGG + tig0047458:697-716 Msa1466530:intergenic 45.0%
! TTGCTCTTGGATTGGAGTTC+TGG - tig0047458:756-775 Msa1466530:CDS 45.0%
GTGTTGCAAAACTTCCGGCA+AGG + tig0047458:692-711 Msa1466530:intergenic 50.0%
! CTCTTGGATTGGAGTTCTGG+AGG - tig0047458:759-778 Msa1466530:CDS 50.0%
GTGTTGCAAAACTTCCGGCA+AGG + tig0047458:692-711 Msa1466530:intergenic 50.0%
! CTCTTGGATTGGAGTTCTGG+AGG - tig0047458:759-778 Msa1466530:CDS 50.0%
TTGAGCCTCTTATCGGTGGC+CGG - tig0047458:254-273 Msa1466530:CDS 55.0%
TGGGAATGGGAGCTATGCCA+TGG - tig0047458:399-418 Msa1466530:intron 55.0%
TTGAGCCTCTTATCGGTGGC+CGG - tig0047458:254-273 Msa1466530:CDS 55.0%
TGGGAATGGGAGCTATGCCA+TGG - tig0047458:399-418 Msa1466530:intron 55.0%
CAACTCCGGCCACCGATAAG+AGG + tig0047458:262-281 Msa1466530:intergenic 60.0%
CTTATCGGTGGCCGGAGTTG+TGG - tig0047458:262-281 Msa1466530:CDS 60.0%
CAACTCCGGCCACCGATAAG+AGG + tig0047458:262-281 Msa1466530:intergenic 60.0%
CTTATCGGTGGCCGGAGTTG+TGG - tig0047458:262-281 Msa1466530:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0047458 gene 215 976 215 ID=Msa1466530;Name=Msa1466530
tig0047458 mRNA 215 976 215 ID=Msa1466530-mRNA-1;Parent=Msa1466530;Name=Msa1466530-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|0.75|1|1|4|0|118
tig0047458 exon 908 976 908 ID=Msa1466530-mRNA-1:exon:25090;Parent=Msa1466530-mRNA-1
tig0047458 exon 755 814 755 ID=Msa1466530-mRNA-1:exon:25089;Parent=Msa1466530-mRNA-1
tig0047458 exon 411 525 411 ID=Msa1466530-mRNA-1:exon:25088;Parent=Msa1466530-mRNA-1
tig0047458 exon 215 327 215 ID=Msa1466530-mRNA-1:exon:25087;Parent=Msa1466530-mRNA-1
tig0047458 CDS 908 976 908 ID=Msa1466530-mRNA-1:cds;Parent=Msa1466530-mRNA-1
tig0047458 CDS 755 814 755 ID=Msa1466530-mRNA-1:cds;Parent=Msa1466530-mRNA-1
tig0047458 CDS 411 525 411 ID=Msa1466530-mRNA-1:cds;Parent=Msa1466530-mRNA-1
tig0047458 CDS 215 327 215 ID=Msa1466530-mRNA-1:cds;Parent=Msa1466530-mRNA-1
Gene Sequence

>Msa1466530

GATTATTATATATCAGCAGATTCTTCTTTATACGGGATATTGAGCCTCTTATCGGTGGCCGGAGTTGTGGTCATGGTTATTGCATTCTCTTTGGGAATGGGAGCTATGCCATGGATTATAATGTCTGAGATTCTTCCGATTAACATCAAAGGCCTTGCCGGAAGTTTTGCAACACTTGCCAATTGGTTCTTTTCGTGGTTGATTACATTGACAGCAAATTTGCTCTTGGATTGGAGTTCTGGAGGAACCTTCACTATATATACAGTTGTATGTGCTTTCACAGTAGGATTTGTTGCTATTTGGGTCCCTGAAACAAAGGGAAAAACTCTTGAAGAAATCCAACAATTTTTCAGATGA

Protein sequence

>Msa1466530

DYYISADSSLYGILSLLSVAGVVVMVIAFSLGMGAMPWIIMSEILPINIKGLAGSFATLANWFFSWLITLTANLLLDWSSGGTFTIYTVVCAFTVGFVAIWVPETKGKTLEEIQQFFR*