Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309920 | XP_003593121.1 | 98.246 | 342 | 6 | 0 | 1 | 342 | 1 | 342 | 0.0 | 695 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309920 | sp|Q42649|F16P2_BETVU | 82.059 | 340 | 61 | 0 | 1 | 340 | 1 | 340 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0309920 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046680 | Msa0309920 | 0.816162 | 6.375344e-52 | -8.615850e-47 |
| Msa0059420 | Msa0309920 | 0.800783 | 1.225567e-48 | -8.615850e-47 |
| Msa0059880 | Msa0309920 | 0.805069 | 1.594591e-49 | -8.615850e-47 |
| Msa0064990 | Msa0309920 | 0.818490 | 1.907663e-52 | -8.615850e-47 |
| Msa0076640 | Msa0309920 | 0.822660 | 2.103359e-53 | -8.615850e-47 |
| Msa0146210 | Msa0309920 | 0.820393 | 7.022992e-53 | -8.615850e-47 |
| Msa0150910 | Msa0309920 | 0.814516 | 1.480939e-51 | -8.615850e-47 |
| Msa0224210 | Msa0309920 | 0.812228 | 4.711254e-51 | -8.615850e-47 |
| Msa0231850 | Msa0309920 | 0.939345 | 1.486660e-99 | -8.615850e-47 |
| Msa0246140 | Msa0309920 | 0.821620 | 3.665859e-53 | -8.615850e-47 |
| Msa0271300 | Msa0309920 | 0.869470 | 3.022135e-66 | -8.615850e-47 |
| Msa0294200 | Msa0309920 | 0.818342 | 2.060324e-52 | -8.615850e-47 |
| Msa0309920 | Msa0390790 | 0.822482 | 2.313591e-53 | -8.615850e-47 |
| Msa0309920 | Msa0398770 | 0.800726 | 1.259070e-48 | -8.615850e-47 |
| Msa0309920 | Msa0466850 | 0.815938 | 7.152427e-52 | -8.615850e-47 |
| Msa0309920 | Msa0480550 | 0.812628 | 3.852342e-51 | -8.615850e-47 |
| Msa0309920 | Msa0484410 | 0.802660 | 5.048073e-49 | -8.615850e-47 |
| Msa0309920 | Msa0500440 | 0.825738 | 3.980558e-54 | -8.615850e-47 |
| Msa0309920 | Msa0508160 | 0.820106 | 8.171178e-53 | -8.615850e-47 |
| Msa0309920 | Msa0513670 | 0.815234 | 1.026449e-51 | -8.615850e-47 |
| Msa0309920 | Msa0537210 | 0.808904 | 2.462613e-50 | -8.615850e-47 |
| Msa0309920 | Msa0557230 | 0.811216 | 7.820955e-51 | -8.615850e-47 |
| Msa0309920 | Msa0560280 | 0.800239 | 1.582161e-48 | -8.615850e-47 |
| Msa0309920 | Msa0563230 | -0.820936 | 5.270087e-53 | -8.615850e-47 |
| Msa0309920 | Msa0593600 | 0.819326 | 1.231429e-52 | -8.615850e-47 |
| Msa0309920 | Msa0617470 | -0.816066 | 6.698219e-52 | -8.615850e-47 |
| Msa0309920 | Msa0633630 | 0.812117 | 4.982054e-51 | -8.615850e-47 |
| Msa0309920 | Msa0651820 | 0.810626 | 1.049977e-50 | -8.615850e-47 |
| Msa0309920 | Msa0652580 | 0.838686 | 2.481409e-57 | -8.615850e-47 |
| Msa0309920 | Msa0652610 | 0.813380 | 2.635589e-51 | -8.615850e-47 |
| Msa0309920 | Msa0672090 | 0.826460 | 2.680806e-54 | -8.615850e-47 |
| Msa0309920 | Msa0695630 | 0.805262 | 1.453523e-49 | -8.615850e-47 |
| Msa0309920 | Msa0700250 | -0.815533 | 8.804937e-52 | -8.615850e-47 |
| Msa0309920 | Msa0701430 | 0.816736 | 4.741359e-52 | -8.615850e-47 |
| Msa0309920 | Msa0744560 | 0.811165 | 8.024756e-51 | -8.615850e-47 |
| Msa0309920 | Msa0754750 | 0.817052 | 4.028060e-52 | -8.615850e-47 |
| Msa0309920 | Msa0795210 | 0.809827 | 1.561121e-50 | -8.615850e-47 |
| Msa0309920 | Msa0826360 | 0.828056 | 1.111300e-54 | -8.615850e-47 |
| Msa0309920 | Msa0826370 | 0.802825 | 4.668334e-49 | -8.615850e-47 |
| Msa0309920 | Msa0832750 | 0.800665 | 1.295515e-48 | -8.615850e-47 |
| Msa0309920 | Msa0865810 | 0.806077 | 9.801039e-50 | -8.615850e-47 |
| Msa0309920 | Msa0865830 | 0.824433 | 8.094035e-54 | -8.615850e-47 |
| Msa0309920 | Msa0876600 | 0.804440 | 2.158428e-49 | -8.615850e-47 |
| Msa0309920 | Msa0914710 | 0.809023 | 2.322289e-50 | -8.615850e-47 |
| Msa0309920 | Msa0940780 | 0.808210 | 3.463516e-50 | -8.615850e-47 |
| Msa0309920 | Msa0944470 | 0.821440 | 4.032318e-53 | -8.615850e-47 |
| Msa0309920 | Msa0945320 | 0.819429 | 1.167117e-52 | -8.615850e-47 |
| Msa0309920 | Msa0947520 | 0.803076 | 4.142352e-49 | -8.615850e-47 |
| Msa0309920 | Msa0982560 | 0.813155 | 2.953852e-51 | -8.615850e-47 |
| Msa0309920 | Msa1018210 | -0.815911 | 7.251835e-52 | -8.615850e-47 |
| Msa0309920 | Msa1142390 | 0.800754 | 1.242425e-48 | -8.615850e-47 |
| Msa0309920 | Msa1157200 | 0.803441 | 3.480890e-49 | -8.615850e-47 |
| Msa0309920 | Msa1322180 | 0.803206 | 3.893322e-49 | -8.615850e-47 |
| Msa0309920 | Msa1344870 | -0.803382 | 3.579939e-49 | -8.615850e-47 |
| Msa0309920 | Msa1344930 | 0.810752 | 9.858423e-51 | -8.615850e-47 |
| Msa0309920 | Msa1373990 | 0.821668 | 3.571792e-53 | -8.615850e-47 |
| Msa0309920 | Msa1398120 | 0.802820 | 4.679472e-49 | -8.615850e-47 |
| Msa0309920 | Msa1414340 | 0.929891 | 3.621189e-93 | -8.615850e-47 |
| Msa0309920 | Msa1459930 | 0.804785 | 1.828773e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309920 | MtrunA17_Chr2g0278581 | 98.246 | 342 | 6 | 0 | 1 | 342 | 1 | 342 | 0.0 | 695 |
| Msa0309920 | MtrunA17_Chr6g0463901 | 85.075 | 335 | 50 | 0 | 1 | 335 | 1 | 335 | 0.0 | 603 |
| Msa0309920 | MtrunA17_Chr7g0241071 | 50.877 | 342 | 150 | 2 | 11 | 335 | 71 | 411 | 1.86e-117 | 345 |
| Msa0309920 | MtrunA17_Chr4g0049821 | 42.258 | 310 | 156 | 6 | 32 | 331 | 87 | 383 | 3.04e-76 | 239 |
| Msa0309920 | MtrunA17_Chr3g0113101 | 30.961 | 281 | 173 | 8 | 67 | 342 | 116 | 380 | 6.45e-23 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309920 | AT1G43670.1 | 80.826 | 339 | 65 | 0 | 1 | 339 | 1 | 339 | 0.0 | 583 |
| Msa0309920 | AT3G54050.2 | 50.882 | 340 | 151 | 3 | 11 | 335 | 79 | 417 | 2.61e-117 | 345 |
| Msa0309920 | AT3G54050.1 | 50.882 | 340 | 151 | 3 | 11 | 335 | 79 | 417 | 2.61e-117 | 345 |
| Msa0309920 | AT5G64380.1 | 40.881 | 318 | 168 | 8 | 32 | 339 | 89 | 396 | 3.52e-74 | 235 |
| Msa0309920 | AT3G55800.1 | 31.449 | 283 | 161 | 10 | 67 | 338 | 123 | 383 | 2.60e-23 | 100 |
Find 69 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCATCAATCACATTGTTCT+TGG | 0.178736 | 2_4:-4700784 | Msa0309920:CDS |
| AGAATAAATCTTTCCTTTCT+TGG | 0.200861 | 2_4:+4698783 | None:intergenic |
| CACTATTGCATATAGATCTT+TGG | 0.249832 | 2_4:-4699238 | Msa0309920:intron |
| ACTGACTTGCCACGCTGTGC+TGG | 0.263816 | 2_4:+4699502 | None:intergenic |
| CTTACCTTAGCTTTCCATTT+GGG | 0.275310 | 2_4:+4698384 | None:intergenic |
| CATAGTTGTGTTTGATCCTT+TGG | 0.288689 | 2_4:-4699391 | Msa0309920:CDS |
| CCAAAGTCTCTTAGGTATAT+TGG | 0.298619 | 2_4:-4698567 | Msa0309920:CDS |
| TATGCAGAATCCAAAGAAAA+TGG | 0.326692 | 2_4:-4697597 | Msa0309920:CDS |
| TGTGCGTCCGCTGCTGATTA+AGG | 0.328499 | 2_4:+4699705 | None:intergenic |
| GAATAAATCTTTCCTTTCTT+GGG | 0.336724 | 2_4:+4698784 | None:intergenic |
| ATTGATTGTGGAGTTTCAAT+AGG | 0.341565 | 2_4:-4699354 | Msa0309920:CDS |
| CACCATATAGCAATGTTCTA+TGG | 0.354552 | 2_4:+4698438 | None:intergenic |
| TCTTACCTTAGCTTTCCATT+TGG | 0.373307 | 2_4:+4698383 | None:intergenic |
| GTTCACCACCAAAGTCTCTT+AGG | 0.374034 | 2_4:-4698575 | Msa0309920:CDS |
| CTGACTTGCCACGCTGTGCT+GGG | 0.376754 | 2_4:+4699503 | None:intergenic |
| TCGTAGCTTCCAAGGAATAT+TGG | 0.381749 | 2_4:+4697645 | None:intergenic |
| AATGCATGTACCTTGATGTT+TGG | 0.386422 | 2_4:+4698921 | None:intergenic |
| TTTGTGCTTAGCACAGGAAA+TGG | 0.404030 | 2_4:-4698996 | Msa0309920:CDS |
| ATGCATGTACCTTGATGTTT+GGG | 0.428381 | 2_4:+4698922 | None:intergenic |
| TTTACACTTGATCCTTCCCT+TGG | 0.433839 | 2_4:-4698963 | Msa0309920:CDS |
| GTCCATAGAACATTGCTATA+TGG | 0.440321 | 2_4:-4698440 | Msa0309920:CDS |
| CCAATATACCTAAGAGACTT+TGG | 0.448075 | 2_4:+4698567 | None:intergenic |
| AAGATTTATTCTGTGAATGA+AGG | 0.455966 | 2_4:-4698772 | Msa0309920:CDS |
| GCAGCTGGTTACTGCATGTA+TGG | 0.456073 | 2_4:-4699145 | Msa0309920:CDS |
| CTGATTTGATGACAATAACT+AGG | 0.457076 | 2_4:-4700861 | Msa0309920:CDS |
| AGCACAGGAAATGGAGTGAA+TGG | 0.467256 | 2_4:-4698987 | Msa0309920:CDS |
| AACAAAACTCACTTGAACAT+TGG | 0.470224 | 2_4:+4700582 | None:intergenic |
| ATTGCAACCTGGGAGCAGTT+TGG | 0.473530 | 2_4:-4699170 | Msa0309920:CDS |
| AACTCCACAATCAATGTTTG+AGG | 0.474075 | 2_4:+4699362 | None:intergenic |
| TGACTTGCCACGCTGTGCTG+GGG | 0.480596 | 2_4:+4699504 | None:intergenic |
| GATCGATCGCCAATATTCCT+TGG | 0.483711 | 2_4:-4697654 | Msa0309920:CDS |
| GCTGATAAGAAAAGCCCAAA+TGG | 0.486498 | 2_4:-4698398 | Msa0309920:CDS |
| GGGAGCAGTTTGGTAGCAGC+TGG | 0.487734 | 2_4:-4699160 | Msa0309920:CDS |
| TGGTGTCTCCAGCAAGTCCT+AGG | 0.492171 | 2_4:+4700602 | None:intergenic |
| TTGCAGTTTGTGCTTAGCAC+AGG | 0.508953 | 2_4:-4699002 | Msa0309920:intron |
| GTTGAAGATGCATTGCAACC+TGG | 0.510015 | 2_4:-4699181 | Msa0309920:CDS |
| TCCGAAACTTACTTGGCGGT+TGG | 0.511923 | 2_4:+4698727 | None:intergenic |
| GTGCCTTCTTGTTTCAGAAG+AGG | 0.512489 | 2_4:-4699548 | Msa0309920:CDS |
| CAGTTCTGTTAGCATCTGCT+TGG | 0.515272 | 2_4:+4700881 | None:intergenic |
| TTGAAGATGCATTGCAACCT+GGG | 0.517948 | 2_4:-4699180 | Msa0309920:CDS |
| TTCTAATGAAGTATTTGTGA+AGG | 0.533564 | 2_4:-4699728 | Msa0309920:CDS |
| GTTGTGTTTGATCCTTTGGA+TGG | 0.544716 | 2_4:-4699387 | Msa0309920:CDS |
| CAATTTCATCGTAGCTTCCA+AGG | 0.546062 | 2_4:+4697637 | None:intergenic |
| GACTTGCCACGCTGTGCTGG+GGG | 0.552070 | 2_4:+4699505 | None:intergenic |
| TGCTCCATCAAATATGACAT+TGG | 0.555129 | 2_4:+4698003 | None:intergenic |
| GGTTCCTCAAACATTGATTG+TGG | 0.568496 | 2_4:-4699366 | Msa0309920:CDS |
| AACAATGTGATTGATGAGAA+TGG | 0.568531 | 2_4:+4700789 | None:intergenic |
| TCATATTTGATGGAGCAAGC+AGG | 0.570588 | 2_4:-4697997 | Msa0309920:CDS |
| GAGTCAATATGAACTCTCCA+AGG | 0.570901 | 2_4:+4698946 | None:intergenic |
| ACTTCATAGATACCCAAGAA+AGG | 0.572281 | 2_4:-4698796 | Msa0309920:intron |
| TGTTTGTTCTTCTGTTAACA+AGG | 0.573073 | 2_4:-4700752 | Msa0309920:intron |
| AGCTTTCACAGGAAAACAAA+GGG | 0.576524 | 2_4:-4697968 | Msa0309920:intron |
| GCAGGAGGTCAAGCTTTCAC+AGG | 0.578987 | 2_4:-4697979 | Msa0309920:CDS |
| AGTCTCTTAGGTATATTGGC+AGG | 0.582669 | 2_4:-4698563 | Msa0309920:intron |
| CAACCTCTTCTGAAACAAGA+AGG | 0.591219 | 2_4:+4699545 | None:intergenic |
| CATGTATGGAAGCTCTTGCA+CGG | 0.591600 | 2_4:-4699131 | Msa0309920:intron |
| AAAGCCCAAATGGAAAGCTA+AGG | 0.593648 | 2_4:-4698388 | Msa0309920:intron |
| TTTGGTGGTGAACTGTCTTG+TGG | 0.594367 | 2_4:+4698585 | None:intergenic |
| GCTGCTACCAAACTGCTCCC+AGG | 0.598305 | 2_4:+4699163 | None:intergenic |
| ATTGACTCACCCAAACATCA+AGG | 0.604776 | 2_4:-4698931 | Msa0309920:intron |
| CATAGAACATTGCTATATGG+TGG | 0.610102 | 2_4:-4698437 | Msa0309920:CDS |
| AATATGAACTCTCCAAGGGA+AGG | 0.611205 | 2_4:+4698951 | None:intergenic |
| AAGCTTTCACAGGAAAACAA+AGG | 0.624169 | 2_4:-4697969 | Msa0309920:CDS |
| GTGAAGGCCTTAATCAGCAG+CGG | 0.626415 | 2_4:-4699712 | Msa0309920:CDS |
| ATATACCTAAGAGACTTTGG+TGG | 0.639800 | 2_4:+4698570 | None:intergenic |
| AGTCAATATGAACTCTCCAA+GGG | 0.668311 | 2_4:+4698947 | None:intergenic |
| ATGTTTGAGGAACCATCCAA+AGG | 0.670132 | 2_4:+4699375 | None:intergenic |
| TCAAAGTATGCTGAATCACG+TGG | 0.673339 | 2_4:-4700820 | Msa0309920:CDS |
| TATTTGATGGAGCAAGCAGG+AGG | 0.695622 | 2_4:-4697994 | Msa0309920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTTAATATGAGTTTAA+TGG | - | chr2_4:4698056-4698075 | Msa0309920:intron | 10.0% |
| !!! | AAGAAAAAATAATTTTGAAA+TGG | - | chr2_4:4698507-4698526 | Msa0309920:intron | 10.0% |
| !!! | TTGATAAATATAGAATATTT+TGG | + | chr2_4:4699004-4699023 | None:intergenic | 10.0% |
| !!! | ATATTGAATTTTCATTAGAT+TGG | - | chr2_4:4698180-4698199 | Msa0309920:intron | 15.0% |
| !!! | ACAATATTAAATGGATTTAA+AGG | + | chr2_4:4698244-4698263 | None:intergenic | 15.0% |
| !! | GTTGAAAATACAATATTAAA+TGG | + | chr2_4:4698253-4698272 | None:intergenic | 15.0% |
| !!! | TAATTCATATGCATTTTATT+TGG | - | chr2_4:4698861-4698880 | Msa0309920:intron | 15.0% |
| !! | TAAGTAACATAAAGTTTATT+AGG | - | chr2_4:4699608-4699627 | Msa0309920:intron | 15.0% |
| !! | ATGTTTAAACTAATAACTTA+TGG | - | chr2_4:4700407-4700426 | Msa0309920:intron | 15.0% |
| !! | ATAGAAAACAAAAGTAATTG+TGG | + | chr2_4:4697798-4697817 | None:intergenic | 20.0% |
| !! | CACGTAACATTATAAATTAA+AGG | + | chr2_4:4697937-4697956 | None:intergenic | 20.0% |
| !! | AGTATTATTTCAGATTTAGA+TGG | + | chr2_4:4698018-4698037 | None:intergenic | 20.0% |
| !! | TAGAAATTAGTACTATGATA+TGG | + | chr2_4:4698134-4698153 | None:intergenic | 20.0% |
| !!! | ATACATCACTCATTTTTATA+AGG | + | chr2_4:4698162-4698181 | None:intergenic | 20.0% |
| !!! | AAATCGAATTTAAAGCTAAT+TGG | + | chr2_4:4698333-4698352 | None:intergenic | 20.0% |
| !!! | AGGAATTCAAGTATTTTAAA+GGG | + | chr2_4:4698411-4698430 | None:intergenic | 20.0% |
| !!! | AAGGAATTCAAGTATTTTAA+AGG | + | chr2_4:4698412-4698431 | None:intergenic | 20.0% |
| !!! | CTTTATTTTGTTCTTTTTGT+TGG | - | chr2_4:4698820-4698839 | Msa0309920:intron | 20.0% |
| !!! | AAATTGCATTTTACTAAATC+AGG | + | chr2_4:4698899-4698918 | None:intergenic | 20.0% |
| !!! | TAAAATGCAATTTTTTGCTT+TGG | - | chr2_4:4698906-4698925 | Msa0309920:intron | 20.0% |
| !! | AATTCCACAATTTATTCAAT+CGG | + | chr2_4:4699459-4699478 | None:intergenic | 20.0% |
| !! | AATAAAATGAAGAAACTTGA+AGG | + | chr2_4:4699981-4700000 | None:intergenic | 20.0% |
| !! | AAATTTGACTGTAAATTATC+AGG | - | chr2_4:4700435-4700454 | Msa0309920:intron | 20.0% |
| !! | AATTTGACTGTAAATTATCA+GGG | - | chr2_4:4700436-4700455 | Msa0309920:intron | 20.0% |
| !! | ACGATTAAATAACTGATATA+AGG | + | chr2_4:4700713-4700732 | None:intergenic | 20.0% |
| ! | AAACTGAAACATTCAATCAA+TGG | + | chr2_4:4697826-4697845 | None:intergenic | 25.0% |
| !!! | TTCAGTTTTTTTTTACTGAC+AGG | - | chr2_4:4697838-4697857 | Msa0309920:intron | 25.0% |
| ! | TCACACAAAAAAGATTTAGA+TGG | + | chr2_4:4697987-4698006 | None:intergenic | 25.0% |
| ! | AACTTGATGTAATAGAGATA+AGG | - | chr2_4:4698372-4698391 | Msa0309920:intron | 25.0% |
| ! | TGAGTGTGTAATTAAATTCA+AGG | + | chr2_4:4698431-4698450 | None:intergenic | 25.0% |
| ! | CCAAGTATTATAAGTTTCTA+TGG | + | chr2_4:4698604-4698623 | None:intergenic | 25.0% |
| ! | CCATAGAAACTTATAATACT+TGG | - | chr2_4:4698601-4698620 | Msa0309920:CDS | 25.0% |
| ! | TAGTGGTGAATAGAAAAATA+GGG | + | chr2_4:4698696-4698715 | None:intergenic | 25.0% |
| ! | ATAGTGGTGAATAGAAAAAT+AGG | + | chr2_4:4698697-4698716 | None:intergenic | 25.0% |
| ! | TTTCTATTCACCACTATTTA+AGG | - | chr2_4:4698700-4698719 | Msa0309920:intron | 25.0% |
| ! | TTCTATTCACCACTATTTAA+GGG | - | chr2_4:4698701-4698720 | Msa0309920:intron | 25.0% |
| !! | TTCTAATGAAGTATTTGTGA+AGG | - | chr2_4:4698751-4698770 | Msa0309920:CDS | 25.0% |
| ! | AAAATATAGCAATCAAGCTT+GGG | + | chr2_4:4699181-4699200 | None:intergenic | 25.0% |
| ! | TAAAATATAGCAATCAAGCT+TGG | + | chr2_4:4699182-4699201 | None:intergenic | 25.0% |
| ! | ACTGATTACAATTCACAATT+TGG | - | chr2_4:4699381-4699400 | Msa0309920:CDS | 25.0% |
| ! | AGTTTATTAGGAGTTTACTT+AGG | - | chr2_4:4699620-4699639 | Msa0309920:intron | 25.0% |
| ! | GAATAAATCTTTCCTTTCTT+GGG | + | chr2_4:4699698-4699717 | None:intergenic | 25.0% |
| ! | AGAATAAATCTTTCCTTTCT+TGG | + | chr2_4:4699699-4699718 | None:intergenic | 25.0% |
| ! | AAGATTTATTCTGTGAATGA+AGG | - | chr2_4:4699707-4699726 | Msa0309920:CDS | 25.0% |
| !! | CTAATTTTCAAATGAATCCT+TGG | - | chr2_4:4699834-4699853 | Msa0309920:intron | 25.0% |
| ! | AACTTTATGTAGTTTGATCT+TGG | - | chr2_4:4699951-4699970 | Msa0309920:intron | 25.0% |
| !! | AATTCAGATTCCTTTTCTAT+CGG | + | chr2_4:4700206-4700225 | None:intergenic | 25.0% |
| !!! | ACCTAAGGACATTTTAAAAT+CGG | - | chr2_4:4700234-4700253 | Msa0309920:intron | 25.0% |
| ! | ACTACATATCCCAATAATTT+AGG | + | chr2_4:4700307-4700326 | None:intergenic | 25.0% |
| ! | ACATATCATATAACACAACT+CGG | + | chr2_4:4700391-4700410 | None:intergenic | 25.0% |
| !! | TTTTCCAATGTCATATTTGA+TGG | - | chr2_4:4700472-4700491 | Msa0309920:intron | 25.0% |
| ! | CAGTTATTTAATCGTTGAAT+TGG | - | chr2_4:4700718-4700737 | Msa0309920:intron | 25.0% |
| ! | TCATTTGATATTACATCTGA+TGG | - | chr2_4:4700741-4700760 | Msa0309920:intron | 25.0% |
| !!! | TCATACGATAATTTTTTTGC+AGG | - | chr2_4:4700773-4700792 | Msa0309920:CDS | 25.0% |
| ! | CTGATTTGATGACAATAACT+AGG | - | chr2_4:4697618-4697637 | Msa0309920:CDS | 30.0% |
| AACAATGTGATTGATGAGAA+TGG | + | chr2_4:4697693-4697712 | None:intergenic | 30.0% | |
| TGTTTGTTCTTCTGTTAACA+AGG | - | chr2_4:4697727-4697746 | Msa0309920:intron | 30.0% | |
| AACAAAACTCACTTGAACAT+TGG | + | chr2_4:4697900-4697919 | None:intergenic | 30.0% | |
| GTTGGATGTTGATGTAAAAA+TGG | + | chr2_4:4698094-4698113 | None:intergenic | 30.0% | |
| AAATACTTCCAAAACATGTG+CGG | - | chr2_4:4698302-4698321 | Msa0309920:intron | 30.0% | |
| TACATCAAGTTTGCATAAAC+CGG | + | chr2_4:4698363-4698382 | None:intergenic | 30.0% | |
| ! | TTTTCTTTTCTCTAATGCAC+AGG | + | chr2_4:4698494-4698513 | None:intergenic | 30.0% |
| ! | AAATGGTTTTCGCATAACTT+TGG | - | chr2_4:4698524-4698543 | Msa0309920:intron | 30.0% |
| ACATTTCACAAAGTTTCAAG+AGG | - | chr2_4:4698648-4698667 | Msa0309920:intron | 30.0% | |
| TCTATTCACCACTATTTAAG+GGG | - | chr2_4:4698702-4698721 | Msa0309920:intron | 30.0% | |
| ACAAAATAAAGCAAACTCGA+GGG | + | chr2_4:4698811-4698830 | None:intergenic | 30.0% | |
| AACAAAATAAAGCAAACTCG+AGG | + | chr2_4:4698812-4698831 | None:intergenic | 30.0% | |
| ATTGATTGTGGAGTTTCAAT+AGG | - | chr2_4:4699125-4699144 | Msa0309920:intron | 30.0% | |
| CACTATTGCATATAGATCTT+TGG | - | chr2_4:4699241-4699260 | Msa0309920:intron | 30.0% | |
| CAATTTATTCAATCGGAATC+AGG | + | chr2_4:4699452-4699471 | None:intergenic | 30.0% | |
| GATTCCGATTGAATAAATTG+TGG | - | chr2_4:4699452-4699471 | Msa0309920:intron | 30.0% | |
| !! | GCATTATTTTGCAGCTAAAT+TGG | - | chr2_4:4699576-4699595 | Msa0309920:intron | 30.0% |
| TACATGTTAACTCAAGAATC+AGG | + | chr2_4:4699805-4699824 | None:intergenic | 30.0% | |
| GAAAAATGCACAATACAGTA+TGG | - | chr2_4:4700008-4700027 | Msa0309920:intron | 30.0% | |
| ACATTTGATATAGCATCCTT+AGG | - | chr2_4:4700153-4700172 | Msa0309920:intron | 30.0% | |
| AAATGATTCTCCGATAGAAA+AGG | - | chr2_4:4700193-4700212 | Msa0309920:intron | 30.0% | |
| TTAAAATGTCCTTAGGTCTT+AGG | + | chr2_4:4700231-4700250 | None:intergenic | 30.0% | |
| !!! | TCCGATTTTAAAATGTCCTT+AGG | + | chr2_4:4700238-4700257 | None:intergenic | 30.0% |
| !! | TATGTATGGAGTATTGCAAA+CGG | + | chr2_4:4700331-4700350 | None:intergenic | 30.0% |
| TATGCAGAATCCAAAGAAAA+TGG | - | chr2_4:4700882-4700901 | Msa0309920:CDS | 30.0% | |
| CTCATCAATCACATTGTTCT+TGG | - | chr2_4:4697695-4697714 | Msa0309920:intron | 35.0% | |
| !!! | GTTTTTTTTTACTGACAGGC+TGG | - | chr2_4:4697842-4697861 | Msa0309920:intron | 35.0% |
| ACTATGATATGGAAGTAGTG+TGG | + | chr2_4:4698123-4698142 | None:intergenic | 35.0% | |
| TGGAAATAGAGACACTTCAA+GGG | + | chr2_4:4698584-4698603 | None:intergenic | 35.0% | |
| ATGGAAATAGAGACACTTCA+AGG | + | chr2_4:4698585-4698604 | None:intergenic | 35.0% | |
| CTATTCACCACTATTTAAGG+GGG | - | chr2_4:4698703-4698722 | Msa0309920:intron | 35.0% | |
| CATAGTTGTGTTTGATCCTT+TGG | - | chr2_4:4699088-4699107 | Msa0309920:intron | 35.0% | |
| AACTCCACAATCAATGTTTG+AGG | + | chr2_4:4699120-4699139 | None:intergenic | 35.0% | |
| AGTCAATATGAACTCTCCAA+GGG | + | chr2_4:4699535-4699554 | None:intergenic | 35.0% | |
| ATGCATGTACCTTGATGTTT+GGG | + | chr2_4:4699560-4699579 | None:intergenic | 35.0% | |
| AATGCATGTACCTTGATGTT+TGG | + | chr2_4:4699561-4699580 | None:intergenic | 35.0% | |
| ACTTCATAGATACCCAAGAA+AGG | - | chr2_4:4699683-4699702 | Msa0309920:intron | 35.0% | |
| ATGAAGGAAATGCCAAAAAC+TGG | - | chr2_4:4699723-4699742 | Msa0309920:CDS | 35.0% | |
| TGAAGGAAATGCCAAAAACT+GGG | - | chr2_4:4699724-4699743 | Msa0309920:CDS | 35.0% | |
| AATTTCCGAAACTTACTTGG+CGG | + | chr2_4:4699759-4699778 | None:intergenic | 35.0% | |
| CAGAATTTCCGAAACTTACT+TGG | + | chr2_4:4699762-4699781 | None:intergenic | 35.0% | |
| ATCTACGAAACAAAGTTCCA+AGG | + | chr2_4:4699854-4699873 | None:intergenic | 35.0% | |
| ATATACCTAAGAGACTTTGG+TGG | + | chr2_4:4699912-4699931 | None:intergenic | 35.0% | |
| CCAATATACCTAAGAGACTT+TGG | + | chr2_4:4699915-4699934 | None:intergenic | 35.0% | |
| CCAAAGTCTCTTAGGTATAT+TGG | - | chr2_4:4699912-4699931 | Msa0309920:intron | 35.0% | |
| GTCCATAGAACATTGCTATA+TGG | - | chr2_4:4700039-4700058 | Msa0309920:intron | 35.0% | |
| CACCATATAGCAATGTTCTA+TGG | + | chr2_4:4700044-4700063 | None:intergenic | 35.0% | |
| CATAGAACATTGCTATATGG+TGG | - | chr2_4:4700042-4700061 | Msa0309920:intron | 35.0% | |
| ! | CTTACCTTAGCTTTCCATTT+GGG | + | chr2_4:4700098-4700117 | None:intergenic | 35.0% |
| ! | TCTTACCTTAGCTTTCCATT+TGG | + | chr2_4:4700099-4700118 | None:intergenic | 35.0% |
| GGTAAGACTGTGATATACTT+TGG | - | chr2_4:4700112-4700131 | Msa0309920:intron | 35.0% | |
| ATATAGCATCCTTAGGTCTT+AGG | - | chr2_4:4700160-4700179 | Msa0309920:intron | 35.0% | |
| GTTCGAGGACCTAAATTATT+GGG | - | chr2_4:4700295-4700314 | Msa0309920:intron | 35.0% | |
| !! | ATGTATGGAGTATTGCAAAC+GGG | + | chr2_4:4700330-4700349 | None:intergenic | 35.0% |
| TCCATACATAGATGAGAACT+TGG | - | chr2_4:4700341-4700360 | Msa0309920:intron | 35.0% | |
| TGCTCCATCAAATATGACAT+TGG | + | chr2_4:4700479-4700498 | None:intergenic | 35.0% | |
| AAGCTTTCACAGGAAAACAA+AGG | - | chr2_4:4700510-4700529 | Msa0309920:intron | 35.0% | |
| AGCTTTCACAGGAAAACAAA+GGG | - | chr2_4:4700511-4700530 | Msa0309920:intron | 35.0% | |
| ! | GATCGATCATGTATTTTCGT+AGG | + | chr2_4:4700813-4700832 | None:intergenic | 35.0% |
| TCAAAGTATGCTGAATCACG+TGG | - | chr2_4:4697659-4697678 | Msa0309920:CDS | 40.0% | |
| ! | TTTTTACTGACAGGCTGGAT+TGG | - | chr2_4:4697847-4697866 | Msa0309920:intron | 40.0% |
| ! | TAAATTCGATTTGCCTCCAC+CGG | - | chr2_4:4698341-4698360 | Msa0309920:intron | 40.0% |
| ATCAAGTTTGCATAAACCGG+TGG | + | chr2_4:4698360-4698379 | None:intergenic | 40.0% | |
| !! | CAACCTCTTCTGAAACAAGA+AGG | + | chr2_4:4698937-4698956 | None:intergenic | 40.0% |
| GTTGTGTTTGATCCTTTGGA+TGG | - | chr2_4:4699092-4699111 | Msa0309920:intron | 40.0% | |
| ATGTTTGAGGAACCATCCAA+AGG | + | chr2_4:4699107-4699126 | None:intergenic | 40.0% | |
| ! | GGTTCCTCAAACATTGATTG+TGG | - | chr2_4:4699113-4699132 | Msa0309920:intron | 40.0% |
| TTGAAGATGCATTGCAACCT+GGG | - | chr2_4:4699299-4699318 | Msa0309920:intron | 40.0% | |
| TTTGTGCTTAGCACAGGAAA+TGG | - | chr2_4:4699483-4699502 | Msa0309920:intron | 40.0% | |
| TTTACACTTGATCCTTCCCT+TGG | - | chr2_4:4699516-4699535 | Msa0309920:CDS | 40.0% | |
| AATATGAACTCTCCAAGGGA+AGG | + | chr2_4:4699531-4699550 | None:intergenic | 40.0% | |
| GAGTCAATATGAACTCTCCA+AGG | + | chr2_4:4699536-4699555 | None:intergenic | 40.0% | |
| ! | ATTGACTCACCCAAACATCA+AGG | - | chr2_4:4699548-4699567 | Msa0309920:CDS | 40.0% |
| AGTCTCTTAGGTATATTGGC+AGG | - | chr2_4:4699916-4699935 | Msa0309920:intron | 40.0% | |
| ! | TTGGGCTTTTCTTATCAGCA+GGG | + | chr2_4:4700080-4700099 | None:intergenic | 40.0% |
| ! | TTTGGGCTTTTCTTATCAGC+AGG | + | chr2_4:4700081-4700100 | None:intergenic | 40.0% |
| GCTGATAAGAAAAGCCCAAA+TGG | - | chr2_4:4700081-4700100 | Msa0309920:intron | 40.0% | |
| AAAGCCCAAATGGAAAGCTA+AGG | - | chr2_4:4700091-4700110 | Msa0309920:intron | 40.0% | |
| ACTAACTCTCCTAAGACCTA+AGG | + | chr2_4:4700172-4700191 | None:intergenic | 40.0% | |
| CTGAATTCTCCTAAGACCTA+AGG | - | chr2_4:4700219-4700238 | Msa0309920:intron | 40.0% | |
| GGTTCGAGGACCTAAATTAT+TGG | - | chr2_4:4700294-4700313 | Msa0309920:intron | 40.0% | |
| GCCAAGTTCTCATCTATGTA+TGG | + | chr2_4:4700345-4700364 | None:intergenic | 40.0% | |
| TCATATTTGATGGAGCAAGC+AGG | - | chr2_4:4700482-4700501 | Msa0309920:intron | 40.0% | |
| GCATCTCTGCATCTTCAATA+TGG | - | chr2_4:4700616-4700635 | Msa0309920:CDS | 40.0% | |
| !!! | TTTTTTGCAGGCACTTGACT+TGG | - | chr2_4:4700785-4700804 | Msa0309920:CDS | 40.0% |
| TCGTAGCTTCCAAGGAATAT+TGG | + | chr2_4:4700837-4700856 | None:intergenic | 40.0% | |
| CAATTTCATCGTAGCTTCCA+AGG | + | chr2_4:4700845-4700864 | None:intergenic | 40.0% | |
| CAGTTCTGTTAGCATCTGCT+TGG | + | chr2_4:4697601-4697620 | None:intergenic | 45.0% | |
| !! | GCTGGATTGGCAAAAATCCT+AGG | - | chr2_4:4697860-4697879 | Msa0309920:intron | 45.0% |
| GCAAAAATCCTAGGACTTGC+TGG | - | chr2_4:4697869-4697888 | Msa0309920:intron | 45.0% | |
| GAAGTAGTGTGGTATCTCGT+TGG | + | chr2_4:4698112-4698131 | None:intergenic | 45.0% | |
| AAGTTTGCATAAACCGGTGG+AGG | + | chr2_4:4698357-4698376 | None:intergenic | 45.0% | |
| TTCACCACTATTTAAGGGGG+AGG | - | chr2_4:4698706-4698725 | Msa0309920:intron | 45.0% | |
| ! | GTGCCTTCTTGTTTCAGAAG+AGG | - | chr2_4:4698931-4698950 | Msa0309920:intron | 45.0% |
| GTTGAAGATGCATTGCAACC+TGG | - | chr2_4:4699298-4699317 | Msa0309920:intron | 45.0% | |
| CATGTATGGAAGCTCTTGCA+CGG | - | chr2_4:4699348-4699367 | Msa0309920:intron | 45.0% | |
| TTGCAGTTTGTGCTTAGCAC+AGG | - | chr2_4:4699477-4699496 | Msa0309920:intron | 45.0% | |
| AGCACAGGAAATGGAGTGAA+TGG | - | chr2_4:4699492-4699511 | Msa0309920:intron | 45.0% | |
| !! | GGTTGGTTCATCCCAGTTTT+TGG | + | chr2_4:4699738-4699757 | None:intergenic | 45.0% |
| ACCAACCGCCAAGTAAGTTT+CGG | - | chr2_4:4699751-4699770 | Msa0309920:CDS | 45.0% | |
| !! | TTTGGTGGTGAACTGTCTTG+TGG | + | chr2_4:4699897-4699916 | None:intergenic | 45.0% |
| GTTCACCACCAAAGTCTCTT+AGG | - | chr2_4:4699904-4699923 | Msa0309920:intron | 45.0% | |
| TATTTGATGGAGCAAGCAGG+AGG | - | chr2_4:4700485-4700504 | Msa0309920:intron | 45.0% | |
| GATCGATCGCCAATATTCCT+TGG | - | chr2_4:4700825-4700844 | Msa0309920:CDS | 45.0% | |
| ! | TGGTGTGTCCGCACATGTTT+TGG | + | chr2_4:4698313-4698332 | None:intergenic | 50.0% |
| TGCTCCTCCCCCTTAAATAG+TGG | + | chr2_4:4698713-4698732 | None:intergenic | 50.0% | |
| GGGGGAGGAGCAAAAGAAAT+TGG | - | chr2_4:4698721-4698740 | Msa0309920:intron | 50.0% | |
| GTGAAGGCCTTAATCAGCAG+CGG | - | chr2_4:4698767-4698786 | Msa0309920:CDS | 50.0% | |
| ATTGCAACCTGGGAGCAGTT+TGG | - | chr2_4:4699309-4699328 | Msa0309920:intron | 50.0% | |
| GCAGCTGGTTACTGCATGTA+TGG | - | chr2_4:4699334-4699353 | Msa0309920:intron | 50.0% | |
| TCCGAAACTTACTTGGCGGT+TGG | + | chr2_4:4699755-4699774 | None:intergenic | 50.0% | |
| GGACATTTCCTTGCCAACTC+AGG | - | chr2_4:4700255-4700274 | Msa0309920:intron | 50.0% | |
| TCCTTGCCAACTCAGGAGTT+AGG | - | chr2_4:4700262-4700281 | Msa0309920:intron | 50.0% | |
| TATGGGCCTAACTCCTGAGT+TGG | + | chr2_4:4700271-4700290 | None:intergenic | 50.0% | |
| TAGGTCCTCGAACCTGCTAT+GGG | + | chr2_4:4700288-4700307 | None:intergenic | 50.0% | |
| TTAGGTCCTCGAACCTGCTA+TGG | + | chr2_4:4700289-4700308 | None:intergenic | 50.0% | |
| TGGTGTCTCCAGCAAGTCCT+AGG | + | chr2_4:4697880-4697899 | None:intergenic | 55.0% | |
| ! | TGTGCGTCCGCTGCTGATTA+AGG | + | chr2_4:4698777-4698796 | None:intergenic | 55.0% |
| ! | GCCTAACTCCTGAGTTGGCA+AGG | + | chr2_4:4700266-4700285 | None:intergenic | 55.0% |
| TCAGGAGTTAGGCCCATAGC+AGG | - | chr2_4:4700273-4700292 | Msa0309920:intron | 55.0% | |
| TTAGGCCCATAGCAGGTTCG+AGG | - | chr2_4:4700280-4700299 | Msa0309920:intron | 55.0% | |
| GCAGGAGGTCAAGCTTTCAC+AGG | - | chr2_4:4700500-4700519 | Msa0309920:intron | 55.0% | |
| ! | TGACTTGCCACGCTGTGCTG+GGG | + | chr2_4:4698978-4698997 | None:intergenic | 60.0% |
| ! | CTGACTTGCCACGCTGTGCT+GGG | + | chr2_4:4698979-4698998 | None:intergenic | 60.0% |
| !! | ACTGACTTGCCACGCTGTGC+TGG | + | chr2_4:4698980-4698999 | None:intergenic | 60.0% |
| GCTGCTACCAAACTGCTCCC+AGG | + | chr2_4:4699319-4699338 | None:intergenic | 60.0% | |
| ! | GGGAGCAGTTTGGTAGCAGC+TGG | - | chr2_4:4699319-4699338 | Msa0309920:intron | 60.0% |
| ATTGTGCCCCCAGCACAGCG+TGG | - | chr2_4:4698968-4698987 | Msa0309920:CDS | 65.0% | |
| GACTTGCCACGCTGTGCTGG+GGG | + | chr2_4:4698977-4698996 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 4697590 | 4700911 | 4697590 | ID=Msa0309920;Name=Msa0309920 |
| chr2_4 | mRNA | 4697590 | 4700911 | 4697590 | ID=Msa0309920-mRNA-1;Parent=Msa0309920;Name=Msa0309920-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.18|0.08|1|1|1|12|0|342 |
| chr2_4 | exon | 4700753 | 4700911 | 4700753 | ID=Msa0309920-mRNA-1:exon:1629;Parent=Msa0309920-mRNA-1 |
| chr2_4 | exon | 4700594 | 4700641 | 4700594 | ID=Msa0309920-mRNA-1:exon:1628;Parent=Msa0309920-mRNA-1 |
| chr2_4 | exon | 4699705 | 4699779 | 4699705 | ID=Msa0309920-mRNA-1:exon:1627;Parent=Msa0309920-mRNA-1 |
| chr2_4 | exon | 4699508 | 4699569 | 4699508 | ID=Msa0309920-mRNA-1:exon:1626;Parent=Msa0309920-mRNA-1 |
| chr2_4 | exon | 4699350 | 4699416 | 4699350 | ID=Msa0309920-mRNA-1:exon:1625;Parent=Msa0309920-mRNA-1 |
| chr2_4 | exon | 4699132 | 4699245 | 4699132 | ID=Msa0309920-mRNA-1:exon:1624;Parent=Msa0309920-mRNA-1 |
| chr2_4 | exon | 4698932 | 4699018 | 4698932 | ID=Msa0309920-mRNA-1:exon:1623;Parent=Msa0309920-mRNA-1 |
| chr2_4 | exon | 4698739 | 4698809 | 4698739 | ID=Msa0309920-mRNA-1:exon:1622;Parent=Msa0309920-mRNA-1 |
| chr2_4 | exon | 4698564 | 4698629 | 4698564 | ID=Msa0309920-mRNA-1:exon:1621;Parent=Msa0309920-mRNA-1 |
| chr2_4 | exon | 4698389 | 4698475 | 4698389 | ID=Msa0309920-mRNA-1:exon:1620;Parent=Msa0309920-mRNA-1 |
| chr2_4 | exon | 4697969 | 4698044 | 4697969 | ID=Msa0309920-mRNA-1:exon:1619;Parent=Msa0309920-mRNA-1 |
| chr2_4 | exon | 4697590 | 4697706 | 4697590 | ID=Msa0309920-mRNA-1:exon:1618;Parent=Msa0309920-mRNA-1 |
| chr2_4 | CDS | 4700753 | 4700911 | 4700753 | ID=Msa0309920-mRNA-1:cds;Parent=Msa0309920-mRNA-1 |
| chr2_4 | CDS | 4700594 | 4700641 | 4700594 | ID=Msa0309920-mRNA-1:cds;Parent=Msa0309920-mRNA-1 |
| chr2_4 | CDS | 4699705 | 4699779 | 4699705 | ID=Msa0309920-mRNA-1:cds;Parent=Msa0309920-mRNA-1 |
| chr2_4 | CDS | 4699508 | 4699569 | 4699508 | ID=Msa0309920-mRNA-1:cds;Parent=Msa0309920-mRNA-1 |
| chr2_4 | CDS | 4699350 | 4699416 | 4699350 | ID=Msa0309920-mRNA-1:cds;Parent=Msa0309920-mRNA-1 |
| chr2_4 | CDS | 4699132 | 4699245 | 4699132 | ID=Msa0309920-mRNA-1:cds;Parent=Msa0309920-mRNA-1 |
| chr2_4 | CDS | 4698932 | 4699018 | 4698932 | ID=Msa0309920-mRNA-1:cds;Parent=Msa0309920-mRNA-1 |
| chr2_4 | CDS | 4698739 | 4698809 | 4698739 | ID=Msa0309920-mRNA-1:cds;Parent=Msa0309920-mRNA-1 |
| chr2_4 | CDS | 4698564 | 4698629 | 4698564 | ID=Msa0309920-mRNA-1:cds;Parent=Msa0309920-mRNA-1 |
| chr2_4 | CDS | 4698389 | 4698475 | 4698389 | ID=Msa0309920-mRNA-1:cds;Parent=Msa0309920-mRNA-1 |
| chr2_4 | CDS | 4697969 | 4698044 | 4697969 | ID=Msa0309920-mRNA-1:cds;Parent=Msa0309920-mRNA-1 |
| chr2_4 | CDS | 4697590 | 4697706 | 4697590 | ID=Msa0309920-mRNA-1:cds;Parent=Msa0309920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
