Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342910 | XP_003611694.2 | 92.118 | 850 | 50 | 2 | 1 | 834 | 1 | 849 | 0.0 | 1587 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342910 | sp|Q9SLN1|FPP7_ARATH | 33.794 | 651 | 322 | 19 | 215 | 829 | 315 | 892 | 1.11e-81 | 284 |
| Msa0342910 | sp|Q9SLN1|FPP7_ARATH | 42.202 | 218 | 105 | 3 | 1 | 209 | 1 | 206 | 6.90e-39 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342910 | G7K5B5 | 92.118 | 850 | 50 | 2 | 1 | 834 | 1 | 849 | 0.0 | 1587 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011720 | Msa0342910 | 0.812061 | 5.124581e-51 | -8.615850e-47 |
| Msa0032370 | Msa0342910 | 0.808302 | 3.310556e-50 | -8.615850e-47 |
| Msa0048000 | Msa0342910 | 0.816966 | 4.211619e-52 | -8.615850e-47 |
| Msa0105420 | Msa0342910 | 0.800521 | 1.386022e-48 | -8.615850e-47 |
| Msa0115810 | Msa0342910 | 0.800720 | 1.262554e-48 | -8.615850e-47 |
| Msa0185590 | Msa0342910 | 0.800580 | 1.348389e-48 | -8.615850e-47 |
| Msa0195770 | Msa0342910 | 0.800172 | 1.632334e-48 | -8.615850e-47 |
| Msa0205850 | Msa0342910 | 0.804415 | 2.183926e-49 | -8.615850e-47 |
| Msa0223380 | Msa0342910 | 0.824109 | 9.646781e-54 | -8.615850e-47 |
| Msa0227510 | Msa0342910 | 0.816067 | 6.694081e-52 | -8.615850e-47 |
| Msa0260810 | Msa0342910 | 0.822673 | 2.088476e-53 | -8.615850e-47 |
| Msa0304700 | Msa0342910 | 0.817464 | 3.254053e-52 | -8.615850e-47 |
| Msa0323080 | Msa0342910 | 0.811039 | 8.546591e-51 | -8.615850e-47 |
| Msa0334350 | Msa0342910 | 0.809089 | 2.248380e-50 | -8.615850e-47 |
| Msa0335040 | Msa0342910 | 0.807721 | 4.402358e-50 | -8.615850e-47 |
| Msa0342200 | Msa0342910 | 0.803446 | 3.472804e-49 | -8.615850e-47 |
| Msa0342910 | Msa0356890 | -0.808671 | 2.762370e-50 | -8.615850e-47 |
| Msa0342910 | Msa0371420 | -0.813699 | 2.242786e-51 | -8.615850e-47 |
| Msa0342910 | Msa0415810 | 0.804779 | 1.833527e-49 | -8.615850e-47 |
| Msa0342910 | Msa0448550 | -0.801584 | 8.403283e-49 | -8.615850e-47 |
| Msa0342910 | Msa0465680 | -0.822919 | 1.830798e-53 | -8.615850e-47 |
| Msa0342910 | Msa0473240 | 0.807646 | 4.565913e-50 | -8.615850e-47 |
| Msa0342910 | Msa0484780 | 0.801507 | 8.714109e-49 | -8.615850e-47 |
| Msa0342910 | Msa0526710 | 0.802339 | 5.880441e-49 | -8.615850e-47 |
| Msa0342910 | Msa0534590 | 0.807946 | 3.942449e-50 | -8.615850e-47 |
| Msa0342910 | Msa0598460 | 0.806422 | 8.291741e-50 | -8.615850e-47 |
| Msa0342910 | Msa0621590 | 0.807994 | 3.850419e-50 | -8.615850e-47 |
| Msa0342910 | Msa0638280 | 0.809987 | 1.441950e-50 | -8.615850e-47 |
| Msa0342910 | Msa0638320 | 0.800222 | 1.594731e-48 | -8.615850e-47 |
| Msa0342910 | Msa0677270 | 0.802479 | 5.503044e-49 | -8.615850e-47 |
| Msa0342910 | Msa0693380 | 0.803289 | 3.742756e-49 | -8.615850e-47 |
| Msa0342910 | Msa0706370 | 0.806755 | 7.050501e-50 | -8.615850e-47 |
| Msa0342910 | Msa0741900 | 0.807399 | 5.152300e-50 | -8.615850e-47 |
| Msa0342910 | Msa0743680 | 0.801122 | 1.045108e-48 | -8.615850e-47 |
| Msa0342910 | Msa0822990 | 0.809779 | 1.598183e-50 | -8.615850e-47 |
| Msa0342910 | Msa0836130 | 0.812032 | 5.197685e-51 | -8.615850e-47 |
| Msa0342910 | Msa0863800 | 0.800719 | 1.263117e-48 | -8.615850e-47 |
| Msa0342910 | Msa0891040 | 0.808118 | 3.624659e-50 | -8.615850e-47 |
| Msa0342910 | Msa0893810 | 0.804448 | 2.150286e-49 | -8.615850e-47 |
| Msa0342910 | Msa0908170 | 0.809334 | 1.992335e-50 | -8.615850e-47 |
| Msa0342910 | Msa0936270 | 0.808122 | 3.617487e-50 | -8.615850e-47 |
| Msa0342910 | Msa0946080 | 0.813995 | 1.930103e-51 | -8.615850e-47 |
| Msa0342910 | Msa1019020 | 0.817526 | 3.150642e-52 | -8.615850e-47 |
| Msa0342910 | Msa1037700 | -0.819312 | 1.240716e-52 | -8.615850e-47 |
| Msa0342910 | Msa1104000 | 0.810006 | 1.428555e-50 | -8.615850e-47 |
| Msa0342910 | Msa1130210 | -0.801204 | 1.005455e-48 | -8.615850e-47 |
| Msa0342910 | Msa1147570 | 0.811235 | 7.748153e-51 | -8.615850e-47 |
| Msa0342910 | Msa1264020 | 0.801117 | 1.047449e-48 | -8.615850e-47 |
| Msa0342910 | Msa1404540 | 0.827190 | 1.793765e-54 | -8.615850e-47 |
| Msa0342910 | Msa1431060 | 0.814188 | 1.749436e-51 | -8.615850e-47 |
| Msa0342910 | Msa1460890 | 0.831681 | 1.454246e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342910 | MtrunA17_Chr5g0401911 | 92.118 | 850 | 50 | 2 | 1 | 834 | 1 | 849 | 0.0 | 1587 |
| Msa0342910 | MtrunA17_Chr4g0053121 | 49.103 | 725 | 242 | 16 | 215 | 820 | 340 | 1056 | 0.0 | 565 |
| Msa0342910 | MtrunA17_Chr4g0053121 | 54.694 | 245 | 82 | 4 | 1 | 228 | 1 | 233 | 6.60e-64 | 233 |
| Msa0342910 | MtrunA17_Chr4g0044561 | 29.161 | 727 | 373 | 21 | 203 | 827 | 309 | 995 | 2.17e-61 | 224 |
| Msa0342910 | MtrunA17_Chr4g0044561 | 36.607 | 224 | 125 | 5 | 1 | 221 | 1 | 210 | 2.03e-22 | 103 |
| Msa0342910 | MtrunA17_Chr3g0142411 | 35.263 | 190 | 107 | 1 | 43 | 216 | 90 | 279 | 5.04e-25 | 112 |
| Msa0342910 | MtrunA17_Chr8g0384881 | 30.244 | 410 | 189 | 13 | 1 | 344 | 1 | 379 | 9.24e-25 | 110 |
| Msa0342910 | MtrunA17_Chr1g0156371 | 29.885 | 261 | 137 | 5 | 1 | 216 | 1 | 260 | 1.12e-21 | 101 |
| Msa0342910 | MtrunA17_Chr1g0159951 | 32.323 | 297 | 140 | 8 | 58 | 323 | 171 | 437 | 2.07e-21 | 100 |
| Msa0342910 | MtrunA17_Chr5g0405291 | 35.220 | 159 | 103 | 0 | 58 | 216 | 102 | 260 | 1.84e-19 | 93.6 |
| Msa0342910 | MtrunA17_Chr3g0130811 | 29.012 | 324 | 161 | 8 | 58 | 338 | 83 | 380 | 7.62e-17 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342910 | AT2G23360.1 | 33.794 | 651 | 322 | 19 | 215 | 829 | 315 | 892 | 1.13e-82 | 284 |
| Msa0342910 | AT2G23360.1 | 42.202 | 218 | 105 | 3 | 1 | 209 | 1 | 206 | 7.02e-40 | 159 |
| Msa0342910 | AT1G19835.6 | 32.000 | 250 | 136 | 2 | 1 | 216 | 1 | 250 | 1.83e-26 | 117 |
| Msa0342910 | AT1G19835.5 | 32.000 | 250 | 136 | 2 | 1 | 216 | 1 | 250 | 1.83e-26 | 117 |
| Msa0342910 | AT1G19835.3 | 32.000 | 250 | 136 | 2 | 1 | 216 | 1 | 250 | 1.83e-26 | 117 |
| Msa0342910 | AT1G19835.1 | 32.000 | 250 | 136 | 2 | 1 | 216 | 1 | 250 | 1.83e-26 | 117 |
| Msa0342910 | AT1G19835.4 | 32.000 | 250 | 136 | 2 | 1 | 216 | 1 | 250 | 1.83e-26 | 117 |
| Msa0342910 | AT1G19835.2 | 32.000 | 250 | 136 | 2 | 1 | 216 | 1 | 250 | 1.83e-26 | 117 |
| Msa0342910 | AT4G36120.2 | 33.962 | 159 | 105 | 0 | 58 | 216 | 102 | 260 | 7.97e-21 | 99.0 |
| Msa0342910 | AT4G36120.1 | 33.962 | 159 | 105 | 0 | 58 | 216 | 102 | 260 | 7.97e-21 | 99.0 |
| Msa0342910 | AT1G47900.2 | 29.064 | 203 | 128 | 1 | 30 | 216 | 98 | 300 | 2.42e-20 | 97.4 |
| Msa0342910 | AT1G47900.3 | 29.064 | 203 | 128 | 1 | 30 | 216 | 98 | 300 | 2.66e-20 | 97.4 |
| Msa0342910 | AT1G47900.3 | 24.269 | 581 | 324 | 23 | 203 | 711 | 415 | 951 | 1.77e-11 | 68.6 |
| Msa0342910 | AT1G47900.1 | 29.064 | 203 | 128 | 1 | 30 | 216 | 98 | 300 | 2.66e-20 | 97.4 |
| Msa0342910 | AT1G47900.1 | 24.269 | 581 | 324 | 23 | 203 | 711 | 415 | 951 | 1.77e-11 | 68.6 |
| Msa0342910 | AT3G19370.3 | 43.077 | 130 | 65 | 3 | 587 | 714 | 497 | 619 | 2.70e-20 | 96.7 |
| Msa0342910 | AT3G19370.1 | 43.077 | 130 | 65 | 3 | 587 | 714 | 497 | 619 | 2.70e-20 | 96.7 |
| Msa0342910 | AT3G19370.2 | 43.077 | 130 | 65 | 3 | 587 | 714 | 497 | 619 | 2.70e-20 | 96.7 |
| Msa0342910 | AT1G77580.4 | 29.677 | 310 | 144 | 7 | 39 | 323 | 20 | 280 | 6.95e-17 | 85.9 |
| Msa0342910 | AT1G77580.2 | 29.677 | 310 | 144 | 7 | 39 | 323 | 54 | 314 | 9.27e-17 | 85.5 |
| Msa0342910 | AT1G77580.3 | 29.677 | 310 | 144 | 7 | 39 | 323 | 54 | 314 | 9.27e-17 | 85.5 |
| Msa0342910 | AT1G21810.3 | 30.037 | 273 | 148 | 8 | 58 | 326 | 26 | 259 | 1.80e-16 | 84.3 |
| Msa0342910 | AT1G21810.1 | 30.037 | 273 | 148 | 8 | 58 | 326 | 26 | 259 | 1.80e-16 | 84.3 |
| Msa0342910 | AT1G77580.1 | 28.803 | 309 | 148 | 6 | 39 | 323 | 20 | 280 | 2.65e-16 | 84.0 |
| Msa0342910 | AT3G05270.3 | 27.762 | 353 | 190 | 11 | 1 | 323 | 1 | 318 | 2.93e-13 | 73.9 |
| Msa0342910 | AT3G05270.2 | 27.762 | 353 | 190 | 11 | 1 | 323 | 1 | 318 | 2.93e-13 | 73.9 |
| Msa0342910 | AT3G05270.1 | 27.762 | 353 | 190 | 11 | 1 | 323 | 1 | 318 | 2.93e-13 | 73.9 |
Find 131 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAGATACGAGTCGATTTC+AGG | 0.243458 | 3_1:+921402 | Msa0342910:CDS |
| CGATGTTAATGTCAATTCTT+TGG | 0.254157 | 3_1:+922256 | Msa0342910:CDS |
| ATGTTTCAATGACATATTAA+AGG | 0.254252 | 3_1:+920796 | Msa0342910:CDS |
| AGTGAAAATGAAGCTAAAAT+TGG | 0.273638 | 3_1:+921352 | Msa0342910:CDS |
| TGTACTTGAGGATATTAAAT+TGG | 0.274597 | 3_1:+920898 | Msa0342910:CDS |
| GACAATGATCCCAAATGTTT+TGG | 0.275589 | 3_1:-920554 | None:intergenic |
| ACCTTCAGATATAAACCTTA+TGG | 0.282326 | 3_1:+920592 | Msa0342910:CDS |
| TCTCTTCACTCTGGTGTATA+CGG | 0.284690 | 3_1:+922488 | Msa0342910:three_prime_UTR |
| AACAGCTGCTTCGGAGAAAT+TGG | 0.292771 | 3_1:+921938 | Msa0342910:CDS |
| ATGTCATTGAAACATGTTTC+CGG | 0.294403 | 3_1:-920788 | None:intergenic |
| TTTAGCATTAGAAGTGGAAT+TGG | 0.295970 | 3_1:+921582 | Msa0342910:CDS |
| GTTTAAAAGTCCAAAACATT+TGG | 0.296321 | 3_1:+920544 | Msa0342910:CDS |
| GAAGCAAATAATGAAATAAT+TGG | 0.299655 | 3_1:+920689 | Msa0342910:CDS |
| TCATTGTCATGCCAAAGTTT+TGG | 0.300151 | 3_1:+920569 | Msa0342910:CDS |
| TATGGATGATTTCATTGAAA+TGG | 0.312296 | 3_1:+920610 | Msa0342910:CDS |
| TGCATTGATCTGGATTATTC+AGG | 0.323312 | 3_1:-920931 | None:intergenic |
| GAAAGTGAAGAGGGTGATAA+AGG | 0.327152 | 3_1:-918861 | None:intergenic |
| CTGGTTGTGTTTGTAATTAT+AGG | 0.331030 | 3_1:-922065 | None:intergenic |
| CCTTCAACTTCATTCTTAGA+AGG | 0.334402 | 3_1:+918932 | Msa0342910:five_prime_UTR |
| TCCATTGCAAGAGTTATCTT+TGG | 0.344872 | 3_1:+920439 | Msa0342910:CDS |
| CTTATAAAAGTTTCATTTGA+AGG | 0.349948 | 3_1:+919852 | Msa0342910:intron |
| GCTTTGGGATGTTTCAAGTA+TGG | 0.350475 | 3_1:+921288 | Msa0342910:CDS |
| TTTAAAAGTCCAAAACATTT+GGG | 0.353219 | 3_1:+920545 | Msa0342910:CDS |
| CGATATGTGTTACAGTATAC+TGG | 0.359514 | 3_1:+921189 | Msa0342910:CDS |
| CAGCAAGCATCTGATCCAAT+AGG | 0.362904 | 3_1:-922133 | None:intergenic |
| TTTCTTCATAAATTAGTTCC+TGG | 0.363413 | 3_1:-919935 | None:intergenic |
| TAATGAAATAATTGGCTTCT+CGG | 0.363720 | 3_1:+920697 | Msa0342910:CDS |
| AGCTATCAGAGAAAAGTAAA+AGG | 0.370845 | 3_1:+920099 | Msa0342910:CDS |
| CTTAGAAGGTCATGTAAGTA+TGG | 0.374854 | 3_1:+918946 | Msa0342910:five_prime_UTR |
| TGAAGAAAGAGTCGCACATT+TGG | 0.377753 | 3_1:+919950 | Msa0342910:CDS |
| ATATCCTCAAGTACATCATC+AGG | 0.383978 | 3_1:-920890 | None:intergenic |
| AGCTTGTGGAAAAGGATGTT+AGG | 0.384604 | 3_1:+922311 | Msa0342910:CDS |
| AGATGTAGTTAAAGTGGTAT+TGG | 0.389553 | 3_1:+920841 | Msa0342910:CDS |
| ATATTAAAGGGTAATATTCC+TGG | 0.390428 | 3_1:+920809 | Msa0342910:CDS |
| TCAACTGCTTCTCAAGGTTA+AGG | 0.391161 | 3_1:-921980 | None:intergenic |
| TAGTCTGCTCTGATGCTACT+TGG | 0.391970 | 3_1:-920406 | None:intergenic |
| AGTTGAAGGTTCATAAGTTT+AGG | 0.392039 | 3_1:-918918 | None:intergenic |
| AACATTGCTGTAATTTGTAA+TGG | 0.396358 | 3_1:+922437 | Msa0342910:three_prime_UTR |
| TCACCGACGCTCTGAGTTCA+AGG | 0.405881 | 3_1:-918798 | None:intergenic |
| TATTTCATTATTTGCTTCTA+CGG | 0.406668 | 3_1:-920684 | None:intergenic |
| TGTTTCAATGACATATTAAA+GGG | 0.406955 | 3_1:+920797 | Msa0342910:CDS |
| TTTCAATGAAATCATCCATA+AGG | 0.409508 | 3_1:-920607 | None:intergenic |
| GAATTGTCGTTATCGTCAAC+AGG | 0.413979 | 3_1:-921097 | None:intergenic |
| GAATCTAACGTGCATTGATC+TGG | 0.414362 | 3_1:-920941 | None:intergenic |
| AGAGATATGAATAAATCAAT+AGG | 0.415065 | 3_1:+921040 | Msa0342910:CDS |
| GTGATCGATAATCCATTTCA+TGG | 0.417721 | 3_1:-921257 | None:intergenic |
| GATCAATGCACGTTAGATTC+AGG | 0.418404 | 3_1:+920944 | Msa0342910:CDS |
| GGAATTCGCTGCATCGAATC+CGG | 0.419142 | 3_1:+920769 | Msa0342910:CDS |
| TTGATCTTCAAGTCTTCTGT+TGG | 0.420207 | 3_1:-921479 | None:intergenic |
| AACTAACTACAGCCATGAAA+TGG | 0.421739 | 3_1:+921245 | Msa0342910:CDS |
| GACGACTAAGCTTGTGGAAA+AGG | 0.426167 | 3_1:+922303 | Msa0342910:CDS |
| GATCGTAATGCATTGATGAT+TGG | 0.427232 | 3_1:+920224 | Msa0342910:CDS |
| TGTCTAATTCTTCACAAAAG+TGG | 0.435433 | 3_1:-921615 | None:intergenic |
| AAAAGTTTCATTTGAAGGAT+GGG | 0.446989 | 3_1:+919857 | Msa0342910:intron |
| TACAGAAACTGAATTAAAAG+AGG | 0.449220 | 3_1:+921546 | Msa0342910:CDS |
| CCTTCTAAGAATGAAGTTGA+AGG | 0.451071 | 3_1:-918932 | None:intergenic |
| TATCTGAAGGTCCAAAACTT+TGG | 0.451418 | 3_1:-920580 | None:intergenic |
| TTTATCTTCTCAGCACGAAA+AGG | 0.451638 | 3_1:+921770 | Msa0342910:intron |
| GTGGAAAACATCCGATTTGA+GGG | 0.454638 | 3_1:+921147 | Msa0342910:CDS |
| AACTTCAGCTTCAGCTTGAA+AGG | 0.457589 | 3_1:+921650 | Msa0342910:CDS |
| TAACCTTGAGAAGCAGTTGA+AGG | 0.457699 | 3_1:+921983 | Msa0342910:CDS |
| TAAAAGTTTCATTTGAAGGA+TGG | 0.464294 | 3_1:+919856 | Msa0342910:intron |
| GATTTATGATGCTGTAATGA+AGG | 0.465323 | 3_1:+920034 | Msa0342910:CDS |
| ATGGGAGATAACAGCTGCTT+CGG | 0.465824 | 3_1:+921929 | Msa0342910:CDS |
| AAAATGATTGAGCTTATTGA+AGG | 0.474560 | 3_1:+921064 | Msa0342910:CDS |
| ATAAGTTTAGGTGCAAGAAA+TGG | 0.474992 | 3_1:-918906 | None:intergenic |
| TTATCTTCTCAGCACGAAAA+GGG | 0.476370 | 3_1:+921771 | Msa0342910:intron |
| AGCTGAAATGTTGTCAATGA+AGG | 0.478178 | 3_1:+919890 | Msa0342910:CDS |
| ACGAAAAGGGCACGCTCAAA+TGG | 0.478503 | 3_1:+921784 | Msa0342910:CDS |
| AGCAAGCATCTGATCCAATA+GGG | 0.480960 | 3_1:-922132 | None:intergenic |
| GTTTCAAGATGTAGTTAAAG+TGG | 0.484191 | 3_1:+920835 | Msa0342910:CDS |
| AGTGGAAAACATCCGATTTG+AGG | 0.484506 | 3_1:+921146 | Msa0342910:CDS |
| GGATCAAAAGCAGTGGGAGT+GGG | 0.489362 | 3_1:+919194 | Msa0342910:CDS |
| TGGATCAAAAGCAGTGGGAG+TGG | 0.491574 | 3_1:+919193 | Msa0342910:CDS |
| CTGTAAGACATCCCTCAAAT+CGG | 0.491698 | 3_1:-921158 | None:intergenic |
| TGAAGTTGAGAAAGTGAAGA+GGG | 0.495395 | 3_1:-918870 | None:intergenic |
| GTCTGATTCTGATAATATCT+CGG | 0.498334 | 3_1:+920748 | Msa0342910:CDS |
| AGTGTCAAGATATCTACTTA+AGG | 0.511028 | 3_1:-921518 | None:intergenic |
| GATCAAAAGCAGTGGGAGTG+GGG | 0.513006 | 3_1:+919195 | Msa0342910:CDS |
| TAATACTTCTCTGATGTATG+AGG | 0.519659 | 3_1:+920268 | Msa0342910:CDS |
| CTGCTTCTCAAGGTTAAGGA+TGG | 0.523429 | 3_1:-921976 | None:intergenic |
| TTGCAACTCCGATCTTAAGT+TGG | 0.524829 | 3_1:-921443 | None:intergenic |
| TGTTAGCTGTGGGGAATCCT+CGG | 0.526902 | 3_1:+920493 | Msa0342910:CDS |
| TTGAAGTTGAGAAAGTGAAG+AGG | 0.529547 | 3_1:-918871 | None:intergenic |
| TGTTCCCTTAAAAGACATGA+AGG | 0.529746 | 3_1:+922094 | Msa0342910:CDS |
| TCTCTTTATCAATGAAGTCT+CGG | 0.537360 | 3_1:-920999 | None:intergenic |
| GCTTGTGGAAAAGGATGTTA+GGG | 0.537823 | 3_1:+922312 | Msa0342910:CDS |
| TCCATAAGGTTTATATCTGA+AGG | 0.537970 | 3_1:-920593 | None:intergenic |
| TGAGGCTCAAGTGCTTCAAA+AGG | 0.538304 | 3_1:+920286 | Msa0342910:CDS |
| CATGGCTGTAGTTAGTTCTG+TGG | 0.541228 | 3_1:-921239 | None:intergenic |
| TTGCCTTCAACTGCTTCTCA+AGG | 0.543029 | 3_1:-921986 | None:intergenic |
| GCCAAAGATAACTCTTGCAA+TGG | 0.544043 | 3_1:-920440 | None:intergenic |
| TAACCCTGATGATGTACTTG+AGG | 0.548421 | 3_1:+920886 | Msa0342910:CDS |
| TCTTACTTCAAATGAAAATG+AGG | 0.549315 | 3_1:+919263 | Msa0342910:CDS |
| CTGAAAAGCACGGATCATGA+AGG | 0.555921 | 3_1:-921125 | None:intergenic |
| TTAGAGAGGAACAAGAGCAA+AGG | 0.564423 | 3_1:+920012 | Msa0342910:CDS |
| TAGTTGAATACTTTCTGAGA+GGG | 0.565156 | 3_1:+922398 | Msa0342910:three_prime_UTR |
| TTTGTAATGGAGAGAAGTGA+GGG | 0.571132 | 3_1:+922450 | Msa0342910:three_prime_UTR |
| TACTATTGCCAACTTAAGAT+CGG | 0.573752 | 3_1:+921435 | Msa0342910:CDS |
| TTGGGATGTTTCAAGTATGG+AGG | 0.576602 | 3_1:+921291 | Msa0342910:CDS |
| TTGGCATCAATGTCTTACAT+TGG | 0.578470 | 3_1:+920458 | Msa0342910:CDS |
| TAAAGGGTAATATTCCTGGT+TGG | 0.583360 | 3_1:+920813 | Msa0342910:CDS |
| TCCTAATGGATCAAAAGCAG+TGG | 0.590014 | 3_1:+919187 | Msa0342910:exon |
| TGAAATGGAAAAGTTAGCAG+TGG | 0.590166 | 3_1:+920625 | Msa0342910:CDS |
| AATATGGACGACTAAGCTTG+TGG | 0.590327 | 3_1:+922297 | Msa0342910:CDS |
| ATTTGTAATGGAGAGAAGTG+AGG | 0.596142 | 3_1:+922449 | Msa0342910:three_prime_UTR |
| CCTAATGGATCAAAAGCAGT+GGG | 0.599875 | 3_1:+919188 | Msa0342910:exon |
| ACATTTGGATCGTACTCTCA+AGG | 0.601084 | 3_1:+919965 | Msa0342910:CDS |
| TGAAAAGCACGGATCATGAA+GGG | 0.602673 | 3_1:-921124 | None:intergenic |
| TTTCCTTGAACTCAGAGCGT+CGG | 0.612395 | 3_1:+918795 | Msa0342910:five_prime_UTR |
| ATCAAAAGCAGTGGGAGTGG+GGG | 0.619363 | 3_1:+919196 | Msa0342910:CDS |
| GATGAACTTACATTTCGCAC+CGG | 0.623235 | 3_1:-921829 | None:intergenic |
| AGCATCTGATCCAATAGGGA+CGG | 0.624671 | 3_1:-922128 | None:intergenic |
| GTCAATGAAGGAACATCTCG+AGG | 0.624828 | 3_1:+919902 | Msa0342910:CDS |
| AAATGATTGAGCTTATTGAA+GGG | 0.624850 | 3_1:+921065 | Msa0342910:CDS |
| ACAATTGAATCAAGCAGACG+TGG | 0.630883 | 3_1:+920202 | Msa0342910:CDS |
| GTAGTTGAATACTTTCTGAG+AGG | 0.635294 | 3_1:+922397 | Msa0342910:three_prime_UTR |
| TCTCGAGGAATCTATACACC+AGG | 0.636451 | 3_1:+919917 | Msa0342910:CDS |
| TGAAATCAATGCAGAAGCCG+AGG | 0.638690 | 3_1:-920510 | None:intergenic |
| GTGATGACAATGTTAGCTGT+GGG | 0.639280 | 3_1:+920483 | Msa0342910:CDS |
| ATGTGTTACAGTATACTGGA+TGG | 0.649581 | 3_1:+921193 | Msa0342910:CDS |
| TACTTCAAATGAAAATGAGG+AGG | 0.655261 | 3_1:+919266 | Msa0342910:CDS |
| ACTACATCTTGAAACCAACC+AGG | 0.656105 | 3_1:-920827 | None:intergenic |
| TTACAGTATACTGGATGGCA+AGG | 0.656212 | 3_1:+921198 | Msa0342910:CDS |
| AGTGATGACAATGTTAGCTG+TGG | 0.662733 | 3_1:+920482 | Msa0342910:CDS |
| TATCCTCAAGTACATCATCA+GGG | 0.668515 | 3_1:-920889 | None:intergenic |
| ATATTATCAGAATCAGACAA+TGG | 0.680750 | 3_1:-920743 | None:intergenic |
| CATTGATTTCAGAATCAGAG+CGG | 0.682943 | 3_1:+920522 | Msa0342910:CDS |
| GTACTCTCAAGGAATGTATG+CGG | 0.712953 | 3_1:+919976 | Msa0342910:CDS |
| GGAAGCATGAGAAATTTCAG+TGG | 0.720900 | 3_1:-920663 | None:intergenic |
| TGATGACAATGTTAGCTGTG+GGG | 0.771666 | 3_1:+920484 | Msa0342910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAATTTTATTTATATAT+TGG | + | chr3_1:919336-919355 | Msa0342910:intron | 0.0% |
| !! | TAATCAAATAAATATTACAA+TGG | - | chr3_1:919018-919037 | None:intergenic | 10.0% |
| !! | TACATGATTTAATTATTATA+TGG | + | chr3_1:919036-919055 | Msa0342910:intron | 10.0% |
| !! | AACTAATATATATATATTGA+AGG | - | chr3_1:921693-921712 | None:intergenic | 10.0% |
| !!! | TGGAATAAATTATTTTGTTA+AGG | + | chr3_1:918966-918985 | Msa0342910:five_prime_UTR | 15.0% |
| !! | AAAATAATAGATGTTAGAAA+AGG | - | chr3_1:919305-919324 | None:intergenic | 15.0% |
| !!! | TTGTTTTATTTTTCTGTTTT+AGG | + | chr3_1:919434-919453 | Msa0342910:intron | 15.0% |
| !!! | TTTTTTAAGAGCAGTTATAT+TGG | + | chr3_1:919826-919845 | Msa0342910:intron | 20.0% |
| !! | CTTATAAAAGTTTCATTTGA+AGG | + | chr3_1:919852-919871 | Msa0342910:intron | 20.0% |
| !! | TTTAAAAGTCCAAAACATTT+GGG | + | chr3_1:920545-920564 | Msa0342910:CDS | 20.0% |
| !! | TATTTCATTATTTGCTTCTA+CGG | - | chr3_1:920687-920706 | None:intergenic | 20.0% |
| !! | GAAGCAAATAATGAAATAAT+TGG | + | chr3_1:920689-920708 | Msa0342910:CDS | 20.0% |
| !! | ATGTTTCAATGACATATTAA+AGG | + | chr3_1:920796-920815 | Msa0342910:CDS | 20.0% |
| !! | TGTTTCAATGACATATTAAA+GGG | + | chr3_1:920797-920816 | Msa0342910:CDS | 20.0% |
| !! | AGAGATATGAATAAATCAAT+AGG | + | chr3_1:921040-921059 | Msa0342910:CDS | 20.0% |
| !! | CATCAAAAAGAAATTTGATT+GGG | + | chr3_1:921318-921337 | Msa0342910:CDS | 20.0% |
| !! | TTGAAGACTAATTTTCCTAA+TGG | + | chr3_1:919173-919192 | Msa0342910:exon | 25.0% |
| ! | TCTTACTTCAAATGAAAATG+AGG | + | chr3_1:919263-919282 | Msa0342910:CDS | 25.0% |
| !!! | GATTCTAAAATGCAACTAAT+TGG | + | chr3_1:919398-919417 | Msa0342910:intron | 25.0% |
| ! | TATAGAAGTGGTTATGATAA+GGG | + | chr3_1:919734-919753 | Msa0342910:intron | 25.0% |
| ! | TAAAAGTTTCATTTGAAGGA+TGG | + | chr3_1:919856-919875 | Msa0342910:intron | 25.0% |
| ! | AAAAGTTTCATTTGAAGGAT+GGG | + | chr3_1:919857-919876 | Msa0342910:intron | 25.0% |
| ! | TTTCTTCATAAATTAGTTCC+TGG | - | chr3_1:919938-919957 | None:intergenic | 25.0% |
| ! | GTTTAAAAGTCCAAAACATT+TGG | + | chr3_1:920544-920563 | Msa0342910:CDS | 25.0% |
| ! | TTTCAATGAAATCATCCATA+AGG | - | chr3_1:920610-920629 | None:intergenic | 25.0% |
| ! | TATGGATGATTTCATTGAAA+TGG | + | chr3_1:920610-920629 | Msa0342910:CDS | 25.0% |
| !! | TAATGAAATAATTGGCTTCT+CGG | + | chr3_1:920697-920716 | Msa0342910:CDS | 25.0% |
| ! | ATATTATCAGAATCAGACAA+TGG | - | chr3_1:920746-920765 | None:intergenic | 25.0% |
| ! | ATATTAAAGGGTAATATTCC+TGG | + | chr3_1:920809-920828 | Msa0342910:CDS | 25.0% |
| ! | TGTACTTGAGGATATTAAAT+TGG | + | chr3_1:920898-920917 | Msa0342910:CDS | 25.0% |
| ! | AAAATGATTGAGCTTATTGA+AGG | + | chr3_1:921064-921083 | Msa0342910:CDS | 25.0% |
| ! | AAATGATTGAGCTTATTGAA+GGG | + | chr3_1:921065-921084 | Msa0342910:CDS | 25.0% |
| !! | CCAATCAAATTTCTTTTTGA+TGG | - | chr3_1:921320-921339 | None:intergenic | 25.0% |
| ! | CCATCAAAAAGAAATTTGAT+TGG | + | chr3_1:921317-921336 | Msa0342910:CDS | 25.0% |
| ! | AGTGAAAATGAAGCTAAAAT+TGG | + | chr3_1:921352-921371 | Msa0342910:CDS | 25.0% |
| ! | TACAGAAACTGAATTAAAAG+AGG | + | chr3_1:921546-921565 | Msa0342910:CDS | 25.0% |
| !! | GCAATACTGTAATATGATTT+TGG | + | chr3_1:921719-921738 | Msa0342910:intron | 25.0% |
| !!! | AAAACTACAATCTTTTCAAG+TGG | - | chr3_1:922212-922231 | None:intergenic | 25.0% |
| !!! | GAAAAGATTGTAGTTTTGAA+AGG | + | chr3_1:922215-922234 | Msa0342910:CDS | 25.0% |
| !!! | GTAGTTTTGAAAGGATTAAA+AGG | + | chr3_1:922224-922243 | Msa0342910:CDS | 25.0% |
| !!! | ATATTTTTTGGCAGGTAAAA+TGG | - | chr3_1:922282-922301 | None:intergenic | 25.0% |
| !! | ATTTTACCTGCCAAAAAATA+TGG | + | chr3_1:922281-922300 | Msa0342910:CDS | 25.0% |
| !! | AACATTGCTGTAATTTGTAA+TGG | + | chr3_1:922437-922456 | Msa0342910:three_prime_UTR | 25.0% |
| ATAAGTTTAGGTGCAAGAAA+TGG | - | chr3_1:918909-918928 | None:intergenic | 30.0% | |
| AGTTGAAGGTTCATAAGTTT+AGG | - | chr3_1:918921-918940 | None:intergenic | 30.0% | |
| ACAATGGAACTATAATCACA+AGG | - | chr3_1:919002-919021 | None:intergenic | 30.0% | |
| GTAGTCATGATCAAACTATT+TGG | + | chr3_1:919079-919098 | Msa0342910:intron | 30.0% | |
| TACTTCAAATGAAAATGAGG+AGG | + | chr3_1:919266-919285 | Msa0342910:CDS | 30.0% | |
| TCTGGCTGATAAAGAAAAAT+TGG | + | chr3_1:919467-919486 | Msa0342910:CDS | 30.0% | |
| !! | GTTTAATTTTCGCACACATT+CGG | + | chr3_1:919654-919673 | Msa0342910:intron | 30.0% |
| ATAACCACTTCTATAGTCAA+AGG | - | chr3_1:919729-919748 | None:intergenic | 30.0% | |
| CTATAGAAGTGGTTATGATA+AGG | + | chr3_1:919733-919752 | Msa0342910:intron | 30.0% | |
| GATTTATGATGCTGTAATGA+AGG | + | chr3_1:920034-920053 | Msa0342910:CDS | 30.0% | |
| AGCTATCAGAGAAAAGTAAA+AGG | + | chr3_1:920099-920118 | Msa0342910:CDS | 30.0% | |
| TAATACTTCTCTGATGTATG+AGG | + | chr3_1:920268-920287 | Msa0342910:CDS | 30.0% | |
| ACCTTCAGATATAAACCTTA+TGG | + | chr3_1:920592-920611 | Msa0342910:CDS | 30.0% | |
| TCCATAAGGTTTATATCTGA+AGG | - | chr3_1:920596-920615 | None:intergenic | 30.0% | |
| GTCTGATTCTGATAATATCT+CGG | + | chr3_1:920748-920767 | Msa0342910:CDS | 30.0% | |
| ATGTCATTGAAACATGTTTC+CGG | - | chr3_1:920791-920810 | None:intergenic | 30.0% | |
| GTTTCAAGATGTAGTTAAAG+TGG | + | chr3_1:920835-920854 | Msa0342910:CDS | 30.0% | |
| AGATGTAGTTAAAGTGGTAT+TGG | + | chr3_1:920841-920860 | Msa0342910:CDS | 30.0% | |
| TCTCTTTATCAATGAAGTCT+CGG | - | chr3_1:921002-921021 | None:intergenic | 30.0% | |
| TACTATTGCCAACTTAAGAT+CGG | + | chr3_1:921435-921454 | Msa0342910:CDS | 30.0% | |
| AGTGTCAAGATATCTACTTA+AGG | - | chr3_1:921521-921540 | None:intergenic | 30.0% | |
| !! | CAAGATTTTAGCATTAGAAG+TGG | + | chr3_1:921576-921595 | Msa0342910:CDS | 30.0% |
| TTTAGCATTAGAAGTGGAAT+TGG | + | chr3_1:921582-921601 | Msa0342910:CDS | 30.0% | |
| TGTCTAATTCTTCACAAAAG+TGG | - | chr3_1:921618-921637 | None:intergenic | 30.0% | |
| ! | AGAAATAGATTTTCCTGCTA+AGG | - | chr3_1:921864-921883 | None:intergenic | 30.0% |
| CTGGTTGTGTTTGTAATTAT+AGG | - | chr3_1:922068-922087 | None:intergenic | 30.0% | |
| ! | TTCACCTTCATGTCTTTTAA+GGG | - | chr3_1:922101-922120 | None:intergenic | 30.0% |
| ! | TTTCACCTTCATGTCTTTTA+AGG | - | chr3_1:922102-922121 | None:intergenic | 30.0% |
| !!! | TTCGCTTGTTTTACAAAACT+TGG | - | chr3_1:922174-922193 | None:intergenic | 30.0% |
| CGATGTTAATGTCAATTCTT+TGG | + | chr3_1:922256-922275 | Msa0342910:CDS | 30.0% | |
| !! | TGATACACTTGTTTTCGTTT+CGG | - | chr3_1:922350-922369 | None:intergenic | 30.0% |
| ! | TAGTTGAATACTTTCTGAGA+GGG | + | chr3_1:922398-922417 | Msa0342910:three_prime_UTR | 30.0% |
| TGAAGTTGAGAAAGTGAAGA+GGG | - | chr3_1:918873-918892 | None:intergenic | 35.0% | |
| TTGAAGTTGAGAAAGTGAAG+AGG | - | chr3_1:918874-918893 | None:intergenic | 35.0% | |
| ! | CCTTCTAAGAATGAAGTTGA+AGG | - | chr3_1:918935-918954 | None:intergenic | 35.0% |
| CCTTCAACTTCATTCTTAGA+AGG | + | chr3_1:918932-918951 | Msa0342910:five_prime_UTR | 35.0% | |
| CTTAGAAGGTCATGTAAGTA+TGG | + | chr3_1:918946-918965 | Msa0342910:five_prime_UTR | 35.0% | |
| ! | CTGATTCTGCATGCATATTT+TGG | - | chr3_1:919147-919166 | None:intergenic | 35.0% |
| TCAAATGAAAATGAGGAGGT+AGG | + | chr3_1:919270-919289 | Msa0342910:intron | 35.0% | |
| TCAAACGTTTAATGATCCGT+CGG | + | chr3_1:919757-919776 | Msa0342910:intron | 35.0% | |
| TCTCAATCAATCATAACCGA+CGG | - | chr3_1:919776-919795 | None:intergenic | 35.0% | |
| AGCTGAAATGTTGTCAATGA+AGG | + | chr3_1:919890-919909 | Msa0342910:CDS | 35.0% | |
| ! | GCAGTTACATTTTGTTAGAG+AGG | + | chr3_1:919998-920017 | Msa0342910:CDS | 35.0% |
| ! | GATCGTAATGCATTGATGAT+TGG | + | chr3_1:920224-920243 | Msa0342910:CDS | 35.0% |
| TCCATTGCAAGAGTTATCTT+TGG | + | chr3_1:920439-920458 | Msa0342910:CDS | 35.0% | |
| TTGGCATCAATGTCTTACAT+TGG | + | chr3_1:920458-920477 | Msa0342910:CDS | 35.0% | |
| !! | CATTGATTTCAGAATCAGAG+CGG | + | chr3_1:920522-920541 | Msa0342910:CDS | 35.0% |
| ! | GACAATGATCCCAAATGTTT+TGG | - | chr3_1:920557-920576 | None:intergenic | 35.0% |
| ! | TCATTGTCATGCCAAAGTTT+TGG | + | chr3_1:920569-920588 | Msa0342910:CDS | 35.0% |
| TATCTGAAGGTCCAAAACTT+TGG | - | chr3_1:920583-920602 | None:intergenic | 35.0% | |
| TGAAATGGAAAAGTTAGCAG+TGG | + | chr3_1:920625-920644 | Msa0342910:CDS | 35.0% | |
| TAAAGGGTAATATTCCTGGT+TGG | + | chr3_1:920813-920832 | Msa0342910:CDS | 35.0% | |
| TATCCTCAAGTACATCATCA+GGG | - | chr3_1:920892-920911 | None:intergenic | 35.0% | |
| ATATCCTCAAGTACATCATC+AGG | - | chr3_1:920893-920912 | None:intergenic | 35.0% | |
| ! | TGCATTGATCTGGATTATTC+AGG | - | chr3_1:920934-920953 | None:intergenic | 35.0% |
| ! | ATGTTTTCCACTGAAAAGCA+CGG | - | chr3_1:921138-921157 | None:intergenic | 35.0% |
| CGATATGTGTTACAGTATAC+TGG | + | chr3_1:921189-921208 | Msa0342910:CDS | 35.0% | |
| ATGTGTTACAGTATACTGGA+TGG | + | chr3_1:921193-921212 | Msa0342910:CDS | 35.0% | |
| AACTAACTACAGCCATGAAA+TGG | + | chr3_1:921245-921264 | Msa0342910:CDS | 35.0% | |
| GTGATCGATAATCCATTTCA+TGG | - | chr3_1:921260-921279 | None:intergenic | 35.0% | |
| TTGATCTTCAAGTCTTCTGT+TGG | - | chr3_1:921482-921501 | None:intergenic | 35.0% | |
| TTTATCTTCTCAGCACGAAA+AGG | + | chr3_1:921770-921789 | Msa0342910:intron | 35.0% | |
| TTATCTTCTCAGCACGAAAA+GGG | + | chr3_1:921771-921790 | Msa0342910:intron | 35.0% | |
| CGTTAATCAGAAAAATGAGC+CGG | + | chr3_1:921810-921829 | Msa0342910:CDS | 35.0% | |
| !! | CATCTGTTTTATTCCTTAGC+AGG | + | chr3_1:921848-921867 | Msa0342910:intron | 35.0% |
| TGTTTGTTTACATATCCTGC+AGG | + | chr3_1:921905-921924 | Msa0342910:intron | 35.0% | |
| TTTACATATCCTGCAGGAAT+GGG | + | chr3_1:921911-921930 | Msa0342910:intron | 35.0% | |
| !! | TTTTAAGGGAACACTAACAC+TGG | - | chr3_1:922087-922106 | None:intergenic | 35.0% |
| TGTTCCCTTAAAAGACATGA+AGG | + | chr3_1:922094-922113 | Msa0342910:CDS | 35.0% | |
| !!! | GCTTAGTCGTCCATATTTTT+TGG | - | chr3_1:922294-922313 | None:intergenic | 35.0% |
| GTAGTTGAATACTTTCTGAG+AGG | + | chr3_1:922397-922416 | Msa0342910:three_prime_UTR | 35.0% | |
| ! | ATTTGTAATGGAGAGAAGTG+AGG | + | chr3_1:922449-922468 | Msa0342910:three_prime_UTR | 35.0% |
| ! | TTTGTAATGGAGAGAAGTGA+GGG | + | chr3_1:922450-922469 | Msa0342910:three_prime_UTR | 35.0% |
| GAAAGTGAAGAGGGTGATAA+AGG | - | chr3_1:918864-918883 | None:intergenic | 40.0% | |
| !!! | CTGCATGCATATTTTGGTCA+AGG | - | chr3_1:919141-919160 | None:intergenic | 40.0% |
| ! | TCCTAATGGATCAAAAGCAG+TGG | + | chr3_1:919187-919206 | Msa0342910:exon | 40.0% |
| ! | CCTAATGGATCAAAAGCAGT+GGG | + | chr3_1:919188-919207 | Msa0342910:exon | 40.0% |
| ATTGTTCAAGAAGCAGTGTC+AGG | + | chr3_1:919579-919598 | Msa0342910:intron | 40.0% | |
| CATGCCTTTGACTATAGAAG+TGG | + | chr3_1:919722-919741 | Msa0342910:intron | 40.0% | |
| TGAAGAAAGAGTCGCACATT+TGG | + | chr3_1:919950-919969 | Msa0342910:CDS | 40.0% | |
| ACATTTGGATCGTACTCTCA+AGG | + | chr3_1:919965-919984 | Msa0342910:CDS | 40.0% | |
| GTACTCTCAAGGAATGTATG+CGG | + | chr3_1:919976-919995 | Msa0342910:CDS | 40.0% | |
| TTAGAGAGGAACAAGAGCAA+AGG | + | chr3_1:920012-920031 | Msa0342910:CDS | 40.0% | |
| ACAATTGAATCAAGCAGACG+TGG | + | chr3_1:920202-920221 | Msa0342910:CDS | 40.0% | |
| !! | CTCTGATGCTACTTGGTTTT+TGG | - | chr3_1:920402-920421 | None:intergenic | 40.0% |
| GCCAAAGATAACTCTTGCAA+TGG | - | chr3_1:920443-920462 | None:intergenic | 40.0% | |
| AGTGATGACAATGTTAGCTG+TGG | + | chr3_1:920482-920501 | Msa0342910:CDS | 40.0% | |
| GTGATGACAATGTTAGCTGT+GGG | + | chr3_1:920483-920502 | Msa0342910:CDS | 40.0% | |
| TGATGACAATGTTAGCTGTG+GGG | + | chr3_1:920484-920503 | Msa0342910:CDS | 40.0% | |
| ! | GGAAGCATGAGAAATTTCAG+TGG | - | chr3_1:920666-920685 | None:intergenic | 40.0% |
| ACTACATCTTGAAACCAACC+AGG | - | chr3_1:920830-920849 | None:intergenic | 40.0% | |
| ! | TAACCCTGATGATGTACTTG+AGG | + | chr3_1:920886-920905 | Msa0342910:CDS | 40.0% |
| ! | GAATCTAACGTGCATTGATC+TGG | - | chr3_1:920944-920963 | None:intergenic | 40.0% |
| GATCAATGCACGTTAGATTC+AGG | + | chr3_1:920944-920963 | Msa0342910:CDS | 40.0% | |
| GAATTGTCGTTATCGTCAAC+AGG | - | chr3_1:921100-921119 | None:intergenic | 40.0% | |
| ! | TGAAAAGCACGGATCATGAA+GGG | - | chr3_1:921127-921146 | None:intergenic | 40.0% |
| ! | AGTGGAAAACATCCGATTTG+AGG | + | chr3_1:921146-921165 | Msa0342910:CDS | 40.0% |
| ! | GTGGAAAACATCCGATTTGA+GGG | + | chr3_1:921147-921166 | Msa0342910:CDS | 40.0% |
| CTGTAAGACATCCCTCAAAT+CGG | - | chr3_1:921161-921180 | None:intergenic | 40.0% | |
| TTACAGTATACTGGATGGCA+AGG | + | chr3_1:921198-921217 | Msa0342910:CDS | 40.0% | |
| !! | GCTTTGGGATGTTTCAAGTA+TGG | + | chr3_1:921288-921307 | Msa0342910:CDS | 40.0% |
| ! | TTGGGATGTTTCAAGTATGG+AGG | + | chr3_1:921291-921310 | Msa0342910:CDS | 40.0% |
| ! | AACAGATACGAGTCGATTTC+AGG | + | chr3_1:921402-921421 | Msa0342910:CDS | 40.0% |
| TTGCAACTCCGATCTTAAGT+TGG | - | chr3_1:921446-921465 | None:intergenic | 40.0% | |
| AACTTCAGCTTCAGCTTGAA+AGG | + | chr3_1:921650-921669 | Msa0342910:CDS | 40.0% | |
| GATGAACTTACATTTCGCAC+CGG | - | chr3_1:921832-921851 | None:intergenic | 40.0% | |
| !! | GCAGGAAAATCTATTTCTGC+TGG | + | chr3_1:921866-921885 | Msa0342910:intron | 40.0% |
| TCTGCTGGAATATTGTGTTG+AGG | + | chr3_1:921881-921900 | Msa0342910:intron | 40.0% | |
| GTTTACATATCCTGCAGGAA+TGG | + | chr3_1:921910-921929 | Msa0342910:intron | 40.0% | |
| TCAACTGCTTCTCAAGGTTA+AGG | - | chr3_1:921983-922002 | None:intergenic | 40.0% | |
| TAACCTTGAGAAGCAGTTGA+AGG | + | chr3_1:921983-922002 | Msa0342910:CDS | 40.0% | |
| AGCAAGCATCTGATCCAATA+GGG | - | chr3_1:922135-922154 | None:intergenic | 40.0% | |
| !!! | AGTCGTCCATATTTTTTGGC+AGG | - | chr3_1:922290-922309 | None:intergenic | 40.0% |
| AATATGGACGACTAAGCTTG+TGG | + | chr3_1:922297-922316 | Msa0342910:CDS | 40.0% | |
| AGCTTGTGGAAAAGGATGTT+AGG | + | chr3_1:922311-922330 | Msa0342910:CDS | 40.0% | |
| GCTTGTGGAAAAGGATGTTA+GGG | + | chr3_1:922312-922331 | Msa0342910:CDS | 40.0% | |
| ! | GTGTGTTTTTCTCTTCACTC+TGG | + | chr3_1:922479-922498 | Msa0342910:three_prime_UTR | 40.0% |
| TCTCTTCACTCTGGTGTATA+CGG | + | chr3_1:922488-922507 | Msa0342910:three_prime_UTR | 40.0% | |
| TTTCCTTGAACTCAGAGCGT+CGG | + | chr3_1:918795-918814 | Msa0342910:five_prime_UTR | 45.0% | |
| !! | CCCACTGCTTTTGATCCATT+AGG | - | chr3_1:919191-919210 | None:intergenic | 45.0% |
| !! | GTTTTAGGTGCATGCACTTC+TGG | + | chr3_1:919449-919468 | Msa0342910:intron | 45.0% |
| GTCAATGAAGGAACATCTCG+AGG | + | chr3_1:919902-919921 | Msa0342910:CDS | 45.0% | |
| TCTCGAGGAATCTATACACC+AGG | + | chr3_1:919917-919936 | Msa0342910:CDS | 45.0% | |
| !!! | TCAAGCTCGCGTTGTTTTAG+AGG | + | chr3_1:920073-920092 | Msa0342910:CDS | 45.0% |
| TGAGGCTCAAGTGCTTCAAA+AGG | + | chr3_1:920286-920305 | Msa0342910:CDS | 45.0% | |
| TAGTCTGCTCTGATGCTACT+TGG | - | chr3_1:920409-920428 | None:intergenic | 45.0% | |
| TGAAATCAATGCAGAAGCCG+AGG | - | chr3_1:920513-920532 | None:intergenic | 45.0% | |
| ! | CTGAAAAGCACGGATCATGA+AGG | - | chr3_1:921128-921147 | None:intergenic | 45.0% |
| ! | TCATGATCCGTGCTTTTCAG+TGG | + | chr3_1:921128-921147 | Msa0342910:CDS | 45.0% |
| !! | CATGGCTGTAGTTAGTTCTG+TGG | - | chr3_1:921242-921261 | None:intergenic | 45.0% |
| !! | TCGATCACTGCTTTTCGCTT+TGG | + | chr3_1:921272-921291 | Msa0342910:CDS | 45.0% |
| !! | CGATCACTGCTTTTCGCTTT+GGG | + | chr3_1:921273-921292 | Msa0342910:CDS | 45.0% |
| ATGGGAGATAACAGCTGCTT+CGG | + | chr3_1:921929-921948 | Msa0342910:CDS | 45.0% | |
| AACAGCTGCTTCGGAGAAAT+TGG | + | chr3_1:921938-921957 | Msa0342910:CDS | 45.0% | |
| CTGCTTCTCAAGGTTAAGGA+TGG | - | chr3_1:921979-921998 | None:intergenic | 45.0% | |
| TTGCCTTCAACTGCTTCTCA+AGG | - | chr3_1:921989-922008 | None:intergenic | 45.0% | |
| GAAAAATCGACCGTCCCTAT+TGG | + | chr3_1:922118-922137 | Msa0342910:CDS | 45.0% | |
| AGCATCTGATCCAATAGGGA+CGG | - | chr3_1:922131-922150 | None:intergenic | 45.0% | |
| CAGCAAGCATCTGATCCAAT+AGG | - | chr3_1:922136-922155 | None:intergenic | 45.0% | |
| GACGACTAAGCTTGTGGAAA+AGG | + | chr3_1:922303-922322 | Msa0342910:CDS | 45.0% | |
| TGGATCAAAAGCAGTGGGAG+TGG | + | chr3_1:919193-919212 | Msa0342910:CDS | 50.0% | |
| GGATCAAAAGCAGTGGGAGT+GGG | + | chr3_1:919194-919213 | Msa0342910:CDS | 50.0% | |
| GATCAAAAGCAGTGGGAGTG+GGG | + | chr3_1:919195-919214 | Msa0342910:CDS | 50.0% | |
| ATCAAAAGCAGTGGGAGTGG+GGG | + | chr3_1:919196-919215 | Msa0342910:CDS | 50.0% | |
| GGAGTGGGGGAAAAAGACAA+GGG | + | chr3_1:919209-919228 | Msa0342910:CDS | 50.0% | |
| TGTTAGCTGTGGGGAATCCT+CGG | + | chr3_1:920493-920512 | Msa0342910:CDS | 50.0% | |
| GGAATTCGCTGCATCGAATC+CGG | + | chr3_1:920769-920788 | Msa0342910:CDS | 50.0% | |
| ! | ACGAAAAGGGCACGCTCAAA+TGG | + | chr3_1:921784-921803 | Msa0342910:CDS | 50.0% |
| CTGTTATCTCCCATTCCTGC+AGG | - | chr3_1:921923-921942 | None:intergenic | 50.0% | |
| ! | TCACCGACGCTCTGAGTTCA+AGG | - | chr3_1:918801-918820 | None:intergenic | 55.0% |
| GGGAGTGGGGGAAAAAGACA+AGG | + | chr3_1:919208-919227 | Msa0342910:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 918776 | 922613 | 918776 | ID=Msa0342910;Name=Msa0342910 |
| chr3_1 | mRNA | 918776 | 922613 | 918776 | ID=Msa0342910-mRNA-1;Parent=Msa0342910;Name=Msa0342910-mRNA-1;_AED=0.06;_eAED=0.06;_QI=243|0.8|0.66|1|0.8|0.66|6|231|834 |
| chr3_1 | exon | 918776 | 918987 | 918776 | ID=Msa0342910-mRNA-1:exon:197;Parent=Msa0342910-mRNA-1 |
| chr3_1 | exon | 919161 | 919287 | 919161 | ID=Msa0342910-mRNA-1:exon:198;Parent=Msa0342910-mRNA-1 |
| chr3_1 | exon | 919456 | 919540 | 919456 | ID=Msa0342910-mRNA-1:exon:199;Parent=Msa0342910-mRNA-1 |
| chr3_1 | exon | 919862 | 921671 | 919862 | ID=Msa0342910-mRNA-1:exon:200;Parent=Msa0342910-mRNA-1 |
| chr3_1 | exon | 921783 | 921840 | 921783 | ID=Msa0342910-mRNA-1:exon:201;Parent=Msa0342910-mRNA-1 |
| chr3_1 | exon | 921927 | 922613 | 921927 | ID=Msa0342910-mRNA-1:exon:202;Parent=Msa0342910-mRNA-1 |
| chr3_1 | five_prime_UTR | 918776 | 918987 | 918776 | ID=Msa0342910-mRNA-1:five_prime_utr;Parent=Msa0342910-mRNA-1 |
| chr3_1 | five_prime_UTR | 919161 | 919191 | 919161 | ID=Msa0342910-mRNA-1:five_prime_utr;Parent=Msa0342910-mRNA-1 |
| chr3_1 | CDS | 919192 | 919287 | 919192 | ID=Msa0342910-mRNA-1:cds;Parent=Msa0342910-mRNA-1 |
| chr3_1 | CDS | 919456 | 919540 | 919456 | ID=Msa0342910-mRNA-1:cds;Parent=Msa0342910-mRNA-1 |
| chr3_1 | CDS | 919862 | 921671 | 919862 | ID=Msa0342910-mRNA-1:cds;Parent=Msa0342910-mRNA-1 |
| chr3_1 | CDS | 921783 | 921840 | 921783 | ID=Msa0342910-mRNA-1:cds;Parent=Msa0342910-mRNA-1 |
| chr3_1 | CDS | 921927 | 922382 | 921927 | ID=Msa0342910-mRNA-1:cds;Parent=Msa0342910-mRNA-1 |
| chr3_1 | three_prime_UTR | 922383 | 922613 | 922383 | ID=Msa0342910-mRNA-1:three_prime_utr;Parent=Msa0342910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
