AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1019020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1019020 MtrunA17_Chr7g0234481 98.190 663 8 1 1 659 1 663 0.0 1334
Msa1019020 MtrunA17_Chr8g0338551 84.662 665 93 3 1 658 1 663 0.0 1135
Msa1019020 MtrunA17_Chr5g0448051 70.032 624 184 2 1 624 1 621 0.0 896
Msa1019020 MtrunA17_Chr5g0445111 66.513 651 215 2 1 651 1 648 0.0 879
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1019020 AT5G48460.1 76.865 657 148 4 1 656 1 654 0.0 1031
Msa1019020 AT5G35700.1 65.831 638 215 2 1 638 1 635 0.0 879
Msa1019020 AT4G26700.4 67.252 626 202 3 1 626 1 623 0.0 872
Msa1019020 AT4G26700.2 67.252 626 202 3 1 626 1 623 0.0 872
Msa1019020 AT4G26700.1 67.252 626 202 3 1 626 1 623 0.0 872
Msa1019020 AT5G55400.1 66.879 628 202 5 1 626 1 624 0.0 866
Msa1019020 AT5G55400.2 66.879 628 202 5 1 626 1 624 0.0 866
Msa1019020 AT5G55400.3 66.879 628 202 5 1 626 1 624 0.0 866
Msa1019020 AT2G04750.1 62.727 660 229 4 1 652 1 651 0.0 834
Msa1019020 AT4G26700.5 66.261 575 191 3 1 575 1 572 0.0 784
Msa1019020 AT4G26700.6 66.261 575 191 3 1 575 1 572 0.0 784
Msa1019020 AT4G26700.3 66.261 575 191 3 1 575 1 572 0.0 784
Msa1019020 AT4G26700.7 73.144 458 121 2 169 626 19 474 0.0 694

Find 105 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAACCAAGTTGTGAAAAT+TGG 0.132470 7_1:-40173842 Msa1019020:CDS
ATGGAACAAGGACACCATTT+TGG 0.212285 7_1:+40178053 None:intergenic
ATTATTATTATCACCTGATT+TGG 0.218067 7_1:+40174643 None:intergenic
GTTAAATTAGATACAATTAT+TGG 0.249136 7_1:-40175408 Msa1019020:intron
AAAGAAAACTCCTCAACTTT+TGG 0.252764 7_1:-40175372 Msa1019020:CDS
ATTATGTTACTTCTGTATTT+TGG 0.257711 7_1:+40177926 None:intergenic
CAAAAGACGGTGTTCTTCTT+TGG 0.259070 7_1:-40176139 Msa1019020:intron
TTTGATTTCACAGATTATTA+AGG 0.291528 7_1:-40175542 Msa1019020:intron
TGTCACCTGGGATTGTTAAT+TGG 0.292139 7_1:-40173916 Msa1019020:CDS
GTCATAGTTCAAAGTTGTTT+TGG 0.296144 7_1:+40178090 None:intergenic
TGAACTATGACAGCTCTTTC+CGG 0.298820 7_1:-40178078 Msa1019020:five_prime_UTR
ATACCTTGAAACTATATATA+TGG 0.335185 7_1:+40173395 None:intergenic
TCAAGTTCTTTAGAAGTTGT+AGG 0.351383 7_1:+40173503 None:intergenic
TACAACCTAGAGCTGTGAAT+TGG 0.353089 7_1:-40172253 Msa1019020:CDS
CTCTCATATATATGCATTGT+TGG 0.360211 7_1:+40170910 None:intergenic
ATCAAGTGTTGAATTTGATA+TGG 0.364286 7_1:+40171009 None:intergenic
AGCTCTTTCCGGTCCCAAAA+TGG 0.367637 7_1:-40178067 Msa1019020:five_prime_UTR
TGAAACTATATATATGGCTT+TGG 0.379514 7_1:+40173401 None:intergenic
TTTCGATATTTCACCCGTTC+CGG 0.380068 7_1:+40174403 None:intergenic
TATAGCTATGTCAAGTCATT+GGG 0.381643 7_1:-40177871 Msa1019020:exon
GTAACCAAGTTGTGAAAATT+GGG 0.383144 7_1:-40173841 Msa1019020:CDS
ACAACCTAGAGCTGTGAATT+GGG 0.394703 7_1:-40172252 Msa1019020:CDS
CGCCTTTGGATTAATAGTCT+TGG 0.397407 7_1:-40174462 Msa1019020:CDS
TGTAACATACGACGCCTTCT+CGG 0.401302 7_1:+40176247 None:intergenic
ACAAAAGCAAGGTTCAGATT+TGG 0.404910 7_1:+40174678 None:intergenic
GAAGTTCAACTTGTGTAAAC+TGG 0.405591 7_1:+40177817 None:intergenic
ATGTCAAGATTGAAAGTTGT+AGG 0.408316 7_1:-40177131 Msa1019020:CDS
AAATTTCTCCTCCGATGTTA+AGG 0.410735 7_1:-40175148 Msa1019020:intron
ATCAGTATTGCAAGAAAACT+TGG 0.410928 7_1:-40171257 Msa1019020:CDS
ACTACCTCAGTGATGTCTTC+AGG 0.412757 7_1:+40171215 None:intergenic
CTCAACTCTGCTAAAGCAAT+TGG 0.419451 7_1:-40175917 Msa1019020:CDS
TGTCGATGGATTAGTGTATT+CGG 0.420155 7_1:+40174806 None:intergenic
CTTGTGACAAAAGGAGTAAC+TGG 0.423464 7_1:-40172227 Msa1019020:intron
TCTTGAACATGCTGAAAAGA+TGG 0.429194 7_1:-40174745 Msa1019020:CDS
CGGATGCAAGAACATTTAGA+AGG 0.432762 7_1:+40174826 None:intergenic
TTTCAGCGTCATTTGGTGCT+TGG 0.433419 7_1:-40175565 Msa1019020:intron
TTATACTTGCTGTTAGTGTA+AGG 0.443705 7_1:+40171092 None:intergenic
TTATAGCTATGTCAAGTCAT+TGG 0.445158 7_1:-40177872 Msa1019020:exon
AACTTGAGATTTCACTCTCA+TGG 0.447009 7_1:-40173487 Msa1019020:CDS
GAGAGTGGGAAGCTTACAAT+TGG 0.450186 7_1:-40177170 Msa1019020:CDS
ATATATCAACAATGTCTTTG+AGG 0.451615 7_1:-40174430 Msa1019020:CDS
CAAAACGATTACTTAACCCT+TGG 0.452811 7_1:-40175967 Msa1019020:CDS
ACTGCAAGAGATATAGTTGA+AGG 0.456956 7_1:-40174705 Msa1019020:CDS
AAAACGATTACTTAACCCTT+GGG 0.459937 7_1:-40175966 Msa1019020:CDS
GCTTCCTGAGTTTCTCACTT+TGG 0.460272 7_1:+40173423 None:intergenic
GGCACTCAAGACTTAATTGA+AGG 0.463220 7_1:-40175875 Msa1019020:CDS
AAGCCATATATATAGTTTCA+AGG 0.477750 7_1:-40173398 Msa1019020:intron
TGATTCTGATATTCTGCAAT+GGG 0.477771 7_1:-40173452 Msa1019020:CDS
ACTCTTGACAAGGTGTCACC+TGG 0.480499 7_1:-40173929 Msa1019020:CDS
GTATTATAGTTTCAGATCCA+TGG 0.487713 7_1:-40177848 Msa1019020:CDS
GCTGGTTGGTTGGGATAGTA+AGG 0.490164 7_1:-40175348 Msa1019020:intron
ACAATGTCTTTGAGGATGTC+CGG 0.491002 7_1:-40174422 Msa1019020:CDS
TCTTGCAATACTGATAATGT+AGG 0.492990 7_1:+40171265 None:intergenic
AAGAGTGTTAGAGAAGGAGA+TGG 0.497113 7_1:+40178034 None:intergenic
TCTTTGAGGATGTCCGGAAC+GGG 0.497370 7_1:-40174416 Msa1019020:intron
ACTTGAGATTTCACTCTCAT+GGG 0.506566 7_1:-40173486 Msa1019020:CDS
TTTGGAAAGAGTGTTAGAGA+AGG 0.507870 7_1:+40178028 None:intergenic
TCGAAGAGATCGTTGGTTGA+AGG 0.509178 7_1:+40176167 None:intergenic
TAACAGCAAGTATAATGTAT+TGG 0.514555 7_1:-40171084 Msa1019020:CDS
CACAATAAGCGAATCCGAGA+AGG 0.518667 7_1:-40176261 Msa1019020:CDS
CAGGATAAAAGTTTATCAGA+TGG 0.519978 7_1:-40172305 Msa1019020:CDS
CTCTAGGTTGTACAGAACTA+AGG 0.521248 7_1:+40172264 None:intergenic
ATCTTCCAATTAACAATCCC+AGG 0.521674 7_1:+40173911 None:intergenic
TTCCAAGACTATTAATCCAA+AGG 0.523555 7_1:+40174460 None:intergenic
TTAAATGGCATCTTTATAGG+AGG 0.524199 7_1:+40173878 None:intergenic
GCGCGTTCATCGATAGTTGT+CGG 0.527996 7_1:+40175998 None:intergenic
CTCAAGACTTAATTGAAGGA+AGG 0.528851 7_1:-40175871 Msa1019020:CDS
CTGATTCTGATATTCTGCAA+TGG 0.530863 7_1:-40173453 Msa1019020:CDS
TGCGATTTCGAAGAGATCGT+TGG 0.536044 7_1:+40176160 None:intergenic
GTCTTTGAGGATGTCCGGAA+CGG 0.548304 7_1:-40174417 Msa1019020:CDS
TATACATAGACTCATTGCAT+TGG 0.561303 7_1:-40177967 Msa1019020:five_prime_UTR
CAAGAGGAAGGTATTTCTTG+AGG 0.564052 7_1:+40176192 None:intergenic
CAATTGCTTTAGCAGAGTTG+AGG 0.565005 7_1:+40175918 None:intergenic
TTGCAGTAAACTTATTAATG+TGG 0.565860 7_1:-40176026 Msa1019020:intron
ATGATCATGAGGAGAGAGAG+TGG 0.567935 7_1:-40177185 Msa1019020:CDS
GAGATTTCACTCTCATGGGA+AGG 0.568367 7_1:-40173482 Msa1019020:CDS
CTTGAACATGCTGAAAAGAT+GGG 0.573699 7_1:-40174744 Msa1019020:CDS
AACACCAAAGTGAGAAACTC+AGG 0.580483 7_1:-40173427 Msa1019020:CDS
TCAAGACTTAATTGAAGGAA+GGG 0.582324 7_1:-40175870 Msa1019020:intron
AGACCCCAATTCACAGCTCT+AGG 0.587212 7_1:+40172248 None:intergenic
AATTGGGGTCTTGTGACAAA+AGG 0.587266 7_1:-40172236 Msa1019020:CDS
AGAAAAGACAAGTTCAGATG+TGG 0.588501 7_1:-40171035 Msa1019020:CDS
CTCTTGACAAGGTGTCACCT+GGG 0.592426 7_1:-40173928 Msa1019020:CDS
ATTTCCAGCAATATTTACCA+AGG 0.600710 7_1:+40173802 None:intergenic
CTCTTCGAAATCGCAAAAGA+CGG 0.602850 7_1:-40176152 Msa1019020:CDS
GGATGTACCGTAGTCAACAT+TGG 0.605781 7_1:-40175896 Msa1019020:CDS
TTGAGTGCCAATGTTGACTA+CGG 0.609361 7_1:+40175889 None:intergenic
TTAGAGAAGGAGATGGAACA+AGG 0.609993 7_1:+40178041 None:intergenic
TGATCATGAGGAGAGAGAGT+GGG 0.613913 7_1:-40177184 Msa1019020:CDS
AAATATGTGCAACAAAAGCA+AGG 0.619112 7_1:+40174667 None:intergenic
CAACCTAGAGCTGTGAATTG+GGG 0.619563 7_1:-40172251 Msa1019020:CDS
AAACTCATCAGCATTCCTCA+AGG 0.625349 7_1:-40176306 Msa1019020:CDS
AACAGTTACCTTAACATCGG+AGG 0.628403 7_1:+40175140 None:intergenic
CCAACCAGCTCCAAAAGTTG+AGG 0.628409 7_1:+40175362 None:intergenic
CAACAATGCATATATATGAG+AGG 0.630849 7_1:-40170909 Msa1019020:three_prime_UTR
TATTGCAGTTCATGATCATG+AGG 0.630962 7_1:-40177196 Msa1019020:intron
TCGTTGGTTGAAGGATCAAG+AGG 0.643960 7_1:+40176176 None:intergenic
TGTGTGAAGCAATGTTGTAG+TGG 0.648045 7_1:+40176280 None:intergenic
ATAAACAGTTACCTTAACAT+CGG 0.650163 7_1:+40175137 None:intergenic
TATCATCTAGCAATGAGTCA+AGG 0.651529 7_1:+40174514 None:intergenic
TGGTTGAAGGATCAAGAGGA+AGG 0.651670 7_1:+40176180 None:intergenic
ATGTTGTAGTGGCAACCTTG+AGG 0.654723 7_1:+40176291 None:intergenic
GCTGGAAATGACATTGTGCA+AGG 0.663800 7_1:-40173788 Msa1019020:CDS
ATAGCTATGTCAAGTCATTG+GGG 0.689294 7_1:-40177870 Msa1019020:exon
GCTTCCTGAAGACATCACTG+AGG 0.793102 7_1:-40171219 Msa1019020:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTTTACATTTTGT+AGG - chr7_1:40173389-40173408 Msa1019020:intron 10.0%
!!! TATTTTTTTTTATGTTTTAC+AGG - chr7_1:40175036-40175055 Msa1019020:intron 10.0%
!! AAATCTTATATATAAATGTA+AGG + chr7_1:40176408-40176427 None:intergenic 10.0%
!!! AAAAAATCTCTAAAAAATAT+GGG + chr7_1:40176962-40176981 None:intergenic 10.0%
!!! AAAAAAATCTCTAAAAAATA+TGG + chr7_1:40176963-40176982 None:intergenic 10.0%
!!! ATTTATTATTGTTTTTTTGA+GGG + chr7_1:40177333-40177352 None:intergenic 10.0%
!!! TATCTAAAAGTTGATAAAAA+AGG + chr7_1:40171009-40171028 None:intergenic 15.0%
!!! ATTTAAATCTAGTCTTTATT+TGG + chr7_1:40171593-40171612 None:intergenic 15.0%
!! AAATTAGTAGAAAGTAAAAA+AGG + chr7_1:40172101-40172120 None:intergenic 15.0%
!! GTAAAAATAAAAATAGAGAA+GGG + chr7_1:40173382-40173401 None:intergenic 15.0%
!! TGTAAAAATAAAAATAGAGA+AGG + chr7_1:40173383-40173402 None:intergenic 15.0%
!! GTTAAATTAGATACAATTAT+TGG - chr7_1:40173595-40173614 Msa1019020:intron 15.0%
!! TTCATACTTATTAAAATAAC+AGG - chr7_1:40173738-40173757 Msa1019020:intron 15.0%
!!! TTTTAATCATTCTTTCATTT+AGG - chr7_1:40174953-40174972 Msa1019020:intron 15.0%
!! GGATATAAAAAATTAATACT+AGG - chr7_1:40175236-40175255 Msa1019020:CDS 15.0%
!! AAATAAAAAATCAACCATAA+TGG + chr7_1:40175446-40175465 None:intergenic 15.0%
!!! TTTTTATTTTAGCATATTTG+TGG - chr7_1:40175457-40175476 Msa1019020:intron 15.0%
!! AAAGTTTACAAACTAATAAT+TGG + chr7_1:40175868-40175887 None:intergenic 15.0%
!!! AATTATTAGTTTGTAAACTT+TGG - chr7_1:40175867-40175886 Msa1019020:intron 15.0%
!! AAAAAGTTATTACAAATGTA+TGG + chr7_1:40176588-40176607 None:intergenic 15.0%
!!! TAAAAATTGTTTGAAATTTC+AGG - chr7_1:40176679-40176698 Msa1019020:intron 15.0%
!!! CATTTATTATTGTTTTTTTG+AGG + chr7_1:40177334-40177353 None:intergenic 15.0%
!!! ATAAATGATCCTTTATTTTT+TGG - chr7_1:40177347-40177366 Msa1019020:intron 15.0%
!!! CTGTTTAATTTGATAAATAA+TGG + chr7_1:40177667-40177686 None:intergenic 15.0%
!! TCAATGTATCATATTTATAT+AGG - chr7_1:40177872-40177891 Msa1019020:exon 15.0%
!!! ATTATGTTACTTCTGTATTT+TGG + chr7_1:40171080-40171099 None:intergenic 20.0%
!! ATTAAAAATCCAATCTTTCT+TGG + chr7_1:40171737-40171756 None:intergenic 20.0%
!!! CTTAAATTTTAATTCCCTTA+TGG + chr7_1:40172571-40172590 None:intergenic 20.0%
!! ATTTGAGTGATATGAAATAA+TGG - chr7_1:40172597-40172616 Msa1019020:intron 20.0%
!!! TATTTTTACATTTTGTAGGT+TGG - chr7_1:40173393-40173412 Msa1019020:intron 20.0%
!!! TTTGATTTCACAGATTATTA+AGG - chr7_1:40173461-40173480 Msa1019020:CDS 20.0%
!! CTTATTAAAATAACAGGATA+TGG - chr7_1:40173744-40173763 Msa1019020:intron 20.0%
!!! TATATTCTGTTTTCTTCAAA+TGG + chr7_1:40173822-40173841 None:intergenic 20.0%
!!! GATAGTTATTTTGAAATTGA+GGG + chr7_1:40173951-40173970 None:intergenic 20.0%
!! TCTATGTGAAAAAATCTTAA+TGG + chr7_1:40173973-40173992 None:intergenic 20.0%
!! GTCTCTAAATATATTTAATG+TGG + chr7_1:40174047-40174066 None:intergenic 20.0%
!! ATTAAATATATTTAGAGACG+AGG - chr7_1:40174048-40174067 Msa1019020:intron 20.0%
!! ATTATTATTATCACCTGATT+TGG + chr7_1:40174363-40174382 None:intergenic 20.0%
!! CATATTTCATATGTTAACAA+AGG + chr7_1:40174404-40174423 None:intergenic 20.0%
!!! AGTTTTGTTCAAAAATACTA+TGG + chr7_1:40174740-40174759 None:intergenic 20.0%
!!! TTTTGTTAGAATAGTGATTA+TGG + chr7_1:40174898-40174917 None:intergenic 20.0%
!!! TTTTTTTTATGTTTTACAGG+TGG - chr7_1:40175039-40175058 Msa1019020:intron 20.0%
!!! TTTTTTTATGTTTTACAGGT+GGG - chr7_1:40175040-40175059 Msa1019020:intron 20.0%
!!! TTTTTAAATGGCATCTTTAT+AGG + chr7_1:40175131-40175150 None:intergenic 20.0%
!!! CAATTCTCTACTTTTTTAAA+TGG + chr7_1:40175143-40175162 None:intergenic 20.0%
!! ATACCTTGAAACTATATATA+TGG + chr7_1:40175611-40175630 None:intergenic 20.0%
!! CTAATGAAGTAAGATAATTA+CGG - chr7_1:40175821-40175840 Msa1019020:intron 20.0%
!!! AAATCATTGTTTTCTTATCT+AGG - chr7_1:40176146-40176165 Msa1019020:CDS 20.0%
!! ATAAGAAACTTTGATACAAA+TGG - chr7_1:40176247-40176266 Msa1019020:CDS 20.0%
!! TAAAAAAAGAATCTGGAAAA+AGG + chr7_1:40176841-40176860 None:intergenic 20.0%
!! AAATAAAGAATCAAAAGTTG+TGG + chr7_1:40176907-40176926 None:intergenic 20.0%
!!! GTATTATTTGTGTCTTATTT+TGG - chr7_1:40177227-40177246 Msa1019020:intron 20.0%
!! TCATAGTTACCAAAAAATAA+AGG + chr7_1:40177359-40177378 None:intergenic 20.0%
!!! TTTTTTGGTAACTATGATAT+TGG - chr7_1:40177362-40177381 Msa1019020:intron 20.0%
!! AAATTAGTCATCACTAAAAT+CGG + chr7_1:40177401-40177420 None:intergenic 20.0%
!!! ATTTTATTGTTTGTTTCATG+TGG + chr7_1:40177608-40177627 None:intergenic 20.0%
!!! AACTACTTTATTTGAAAACA+TGG - chr7_1:40177629-40177648 Msa1019020:intron 20.0%
!! AATTAAACAGTCTTCATATT+TGG - chr7_1:40177677-40177696 Msa1019020:intron 20.0%
!! TAAACATTTATGATACTTTG+TGG - chr7_1:40177821-40177840 Msa1019020:CDS 20.0%
!!! ATAAAAAAGGTGAAAGTGTT+TGG + chr7_1:40170996-40171015 None:intergenic 25.0%
!!! TTGTTGATCATACTTTTTCT+TGG - chr7_1:40171363-40171382 Msa1019020:intron 25.0%
!!! TGAGTCATGATCATTTTTAA+TGG - chr7_1:40171779-40171798 Msa1019020:intron 25.0%
!!! TGATTTTGAATTGTTTCTCA+AGG - chr7_1:40171964-40171983 Msa1019020:intron 25.0%
!!! TATTGGTTCTTTTTGCTTTT+TGG - chr7_1:40172044-40172063 Msa1019020:intron 25.0%
! AAAGTAAAAAAGGTAACTTG+TGG + chr7_1:40172091-40172110 None:intergenic 25.0%
! CAAAGTTATGAAATTAGTGT+TGG - chr7_1:40172178-40172197 Msa1019020:intron 25.0%
! TTGAATGTAACTACATATGT+CGG - chr7_1:40172326-40172345 Msa1019020:intron 25.0%
! TGTCTAATGTAAAGAAAAAG+TGG + chr7_1:40172435-40172454 None:intergenic 25.0%
! AATGTTTCCAAAAAAAATGC+TGG + chr7_1:40172936-40172955 None:intergenic 25.0%
! TTGCAGTAAACTTATTAATG+TGG - chr7_1:40172977-40172996 Msa1019020:intron 25.0%
! TTTACACTGTGTATATGAAT+TGG - chr7_1:40173290-40173309 Msa1019020:intron 25.0%
! ATAAACAGTTACCTTAACAT+CGG + chr7_1:40173869-40173888 None:intergenic 25.0%
!!! GGATAGTTATTTTGAAATTG+AGG + chr7_1:40173952-40173971 None:intergenic 25.0%
! ATCAACATATATGATTCTTG+TGG - chr7_1:40174126-40174145 Msa1019020:intron 25.0%
!! TAATTCAAGTTCTTTGTAAC+AGG - chr7_1:40174431-40174450 Msa1019020:CDS 25.0%
! ATATATCAACAATGTCTTTG+AGG - chr7_1:40174573-40174592 Msa1019020:intron 25.0%
!!! TTGAATTTGAACTGTTTTTG+TGG - chr7_1:40174656-40174675 Msa1019020:intron 25.0%
! TTCTATCATGCAAAGAATTA+GGG + chr7_1:40174776-40174795 None:intergenic 25.0%
! TTTCTATCATGCAAAGAATT+AGG + chr7_1:40174777-40174796 None:intergenic 25.0%
! TAACATTGTCTAAACCATTA+TGG - chr7_1:40175429-40175448 Msa1019020:intron 25.0%
! TGAAACTATATATATGGCTT+TGG + chr7_1:40175605-40175624 None:intergenic 25.0%
! AAGCCATATATATAGTTTCA+AGG - chr7_1:40175605-40175624 Msa1019020:intron 25.0%
! CTTTACATCAGATTCTTAAT+TGG + chr7_1:40175660-40175679 None:intergenic 25.0%
! CAATTAAGAATCTGATGTAA+AGG - chr7_1:40175658-40175677 Msa1019020:intron 25.0%
! AATGAATAAGATTAAGAGCT+AGG + chr7_1:40175710-40175729 None:intergenic 25.0%
! TCGCAATTCTATATACATAA+AGG + chr7_1:40176060-40176079 None:intergenic 25.0%
! TGTATATAGAATTGCGATAA+AGG - chr7_1:40176063-40176082 Msa1019020:intron 25.0%
!! AGGCTAACAAAATCTTTTTA+TGG - chr7_1:40176166-40176185 Msa1019020:CDS 25.0%
! TGATTGTTGGATATCATTAA+TGG - chr7_1:40176277-40176296 Msa1019020:CDS 25.0%
!!! GCATTTTAGTAAAAAAACCA+TGG - chr7_1:40176343-40176362 Msa1019020:CDS 25.0%
!!! ATCAGATGGAATATTTTTTC+TGG - chr7_1:40176712-40176731 Msa1019020:intron 25.0%
! TCAAAGATTCAACAAGTAAA+AGG + chr7_1:40176810-40176829 None:intergenic 25.0%
! GTACACATAAAAAAAGAATC+TGG + chr7_1:40176848-40176867 None:intergenic 25.0%
!!! GACTTTTCATCAATTTGTTA+TGG + chr7_1:40177158-40177177 None:intergenic 25.0%
! CAAGTTTATAAAAGCTATCA+TGG - chr7_1:40177200-40177219 Msa1019020:intron 25.0%
!!! TTATTTTGGTTGTGATACAT+GGG - chr7_1:40177241-40177260 Msa1019020:intron 25.0%
! ATTTGACTGACCATATTTAT+TGG - chr7_1:40177430-40177449 Msa1019020:intron 25.0%
!! TAGAAAAAGTGTATTTAAGC+CGG + chr7_1:40177463-40177482 None:intergenic 25.0%
!!! ATACACTTTTTCTATTTGCA+AGG - chr7_1:40177469-40177488 Msa1019020:intron 25.0%
!! ATGATACTTTGTGGTTTTTA+TGG - chr7_1:40177830-40177849 Msa1019020:CDS 25.0%
! TAACAGCAAGTATAATGTAT+TGG - chr7_1:40177919-40177938 Msa1019020:five_prime_UTR 25.0%
!!! ATCAAGTGTTGAATTTGATA+TGG + chr7_1:40177997-40178016 None:intergenic 25.0%
! GTCATAGTTCAAAGTTGTTT+TGG + chr7_1:40170916-40170935 None:intergenic 30.0%
TATACATAGACTCATTGCAT+TGG - chr7_1:40171036-40171055 Msa1019020:CDS 30.0%
TTATAGCTATGTCAAGTCAT+TGG - chr7_1:40171131-40171150 Msa1019020:intron 30.0%
TATAGCTATGTCAAGTCATT+GGG - chr7_1:40171132-40171151 Msa1019020:intron 30.0%
GTATTATAGTTTCAGATCCA+TGG - chr7_1:40171155-40171174 Msa1019020:intron 30.0%
TTTCATTCTAATTCAGCTTC+TGG - chr7_1:40171318-40171337 Msa1019020:intron 30.0%
TTCATTCTAATTCAGCTTCT+GGG - chr7_1:40171319-40171338 Msa1019020:intron 30.0%
TTGTTGAATATCCTATTGCT+TGG - chr7_1:40171509-40171528 Msa1019020:intron 30.0%
!! GTTGATTTTCCAAGAAAGAT+TGG - chr7_1:40171725-40171744 Msa1019020:intron 30.0%
ATGTCAAGATTGAAAGTTGT+AGG - chr7_1:40171872-40171891 Msa1019020:intron 30.0%
!!! TCAAAAGTTGGCTTTTTGAA+AGG + chr7_1:40172020-40172039 None:intergenic 30.0%
AACCAATACACTTCAAAAGT+TGG + chr7_1:40172032-40172051 None:intergenic 30.0%
TAGATCAACAAAAGAAGGAA+AGG + chr7_1:40172214-40172233 None:intergenic 30.0%
TGTTGTAGATCAACAAAAGA+AGG + chr7_1:40172219-40172238 None:intergenic 30.0%
TTACATTAGACACAAAGAAG+AGG - chr7_1:40172443-40172462 Msa1019020:intron 30.0%
TACATTAGACACAAAGAAGA+GGG - chr7_1:40172444-40172463 Msa1019020:intron 30.0%
AATCGAAGAGCTGAAAAATA+TGG + chr7_1:40172528-40172547 None:intergenic 30.0%
TTTAATGCCAAACACCATAA+GGG - chr7_1:40172554-40172573 Msa1019020:intron 30.0%
TTTAATTCCCTTATGGTGTT+TGG + chr7_1:40172564-40172583 None:intergenic 30.0%
GTTGCTATAATAATGATGAC+AGG - chr7_1:40172619-40172638 Msa1019020:intron 30.0%
!!! CATTATGCCAGCATTTTTTT+TGG - chr7_1:40172926-40172945 Msa1019020:intron 30.0%
AAAACGATTACTTAACCCTT+GGG - chr7_1:40173037-40173056 Msa1019020:intron 30.0%
! GATTTTCATTTCTTTCCCAA+GGG + chr7_1:40173055-40173074 None:intergenic 30.0%
! TGATTTTCATTTCTTTCCCA+AGG + chr7_1:40173056-40173075 None:intergenic 30.0%
TCAAGACTTAATTGAAGGAA+GGG - chr7_1:40173133-40173152 Msa1019020:intron 30.0%
! AGAAGGGTTATTTCAGAAAA+TGG + chr7_1:40173366-40173385 None:intergenic 30.0%
!!! GTTTTAATTTCAGCGTCATT+TGG - chr7_1:40173431-40173450 Msa1019020:CDS 30.0%
! AAAGTTGAGGAGTTTTCTTT+AGG + chr7_1:40173631-40173650 None:intergenic 30.0%
! AAAGAAAACTCCTCAACTTT+TGG - chr7_1:40173631-40173650 Msa1019020:intron 30.0%
TAAAAGATAACAGCGAAGAA+CGG + chr7_1:40173688-40173707 None:intergenic 30.0%
!!! CATCTCAACAAGATTTTTTC+TGG + chr7_1:40173790-40173809 None:intergenic 30.0%
CAGAAAAAATCTTGTTGAGA+TGG - chr7_1:40173788-40173807 Msa1019020:CDS 30.0%
!!! ACTAGTTTTGCTCTTTCAAA+CGG + chr7_1:40174238-40174257 None:intergenic 30.0%
AAATATGTGCAACAAAAGCA+AGG + chr7_1:40174339-40174358 None:intergenic 30.0%
! TTGCACATATTTTCCAAATC+AGG - chr7_1:40174347-40174366 Msa1019020:intron 30.0%
TTCCAAGACTATTAATCCAA+AGG + chr7_1:40174546-40174565 None:intergenic 30.0%
! TGCATGATAGAAAAGTATAG+CGG - chr7_1:40174784-40174803 Msa1019020:CDS 30.0%
ATCGGAAACATAGTCATAAT+TGG - chr7_1:40174817-40174836 Msa1019020:CDS 30.0%
TTAAATGGCATCTTTATAGG+AGG + chr7_1:40175128-40175147 None:intergenic 30.0%
TGTAACCAAGTTGTGAAAAT+TGG - chr7_1:40175161-40175180 Msa1019020:CDS 30.0%
GTAACCAAGTTGTGAAAATT+GGG - chr7_1:40175162-40175181 Msa1019020:CDS 30.0%
! GAAACAACTTAAGTTTTCCT+TGG - chr7_1:40175184-40175203 Msa1019020:CDS 30.0%
! TTTTCCTTGGTAAATATTGC+TGG - chr7_1:40175197-40175216 Msa1019020:CDS 30.0%
ATTTCCAGCAATATTTACCA+AGG + chr7_1:40175204-40175223 None:intergenic 30.0%
ACAATTGATTGTAACCTTGT+CGG + chr7_1:40175339-40175358 None:intergenic 30.0%
GTTAACACCTTATGAAACTA+AGG + chr7_1:40175413-40175432 None:intergenic 30.0%
! TCAAGTTCTTTAGAAGTTGT+AGG + chr7_1:40175503-40175522 None:intergenic 30.0%
TGATTCTGATATTCTGCAAT+GGG - chr7_1:40175551-40175570 Msa1019020:CDS 30.0%
TTAAGAGCTAGGTAAACTAA+TGG + chr7_1:40175699-40175718 None:intergenic 30.0%
CTATATACATAAAGGCTACA+TGG + chr7_1:40176052-40176071 None:intergenic 30.0%
TGTTGTCACTCTATACATAA+AGG + chr7_1:40176126-40176145 None:intergenic 30.0%
AAACTTTGATACAAATGGCA+TGG - chr7_1:40176252-40176271 Msa1019020:CDS 30.0%
TTATCCACTTGTATGTATTC+AGG - chr7_1:40176629-40176648 Msa1019020:intron 30.0%
TATCCACTTGTATGTATTCA+GGG - chr7_1:40176630-40176649 Msa1019020:intron 30.0%
TGTATGTATTCAGGGATTAA+AGG - chr7_1:40176638-40176657 Msa1019020:intron 30.0%
CAGGATAAAAGTTTATCAGA+TGG - chr7_1:40176698-40176717 Msa1019020:intron 30.0%
! TACTTGTTGAATCTTTGACT+TGG - chr7_1:40176812-40176831 Msa1019020:intron 30.0%
AAAGAATCAAAAGTTGTGGA+GGG + chr7_1:40176903-40176922 None:intergenic 30.0%
TAAAGAATCAAAAGTTGTGG+AGG + chr7_1:40176904-40176923 None:intergenic 30.0%
!! AAAGAGCAAGCTGTTTTAAA+TGG + chr7_1:40177085-40177104 None:intergenic 30.0%
!!! CTTATTTTGGTTGTGATACA+TGG - chr7_1:40177240-40177259 Msa1019020:intron 30.0%
!!! TATTGTTTTTTTGAGGGAGA+AGG + chr7_1:40177327-40177346 None:intergenic 30.0%
! AGAAAAAGTGTATTTAAGCC+GGG + chr7_1:40177462-40177481 None:intergenic 30.0%
AATCATGAAATTCTCTCAAG+TGG - chr7_1:40177559-40177578 Msa1019020:intron 30.0%
ATCATGAAATTCTCTCAAGT+GGG - chr7_1:40177560-40177579 Msa1019020:intron 30.0%
! TCTTGCAATACTGATAATGT+AGG + chr7_1:40177741-40177760 None:intergenic 30.0%
ATCAGTATTGCAAGAAAACT+TGG - chr7_1:40177746-40177765 Msa1019020:intron 30.0%
!! TTATACTTGCTGTTAGTGTA+AGG + chr7_1:40177914-40177933 None:intergenic 30.0%
CTCTCATATATATGCATTGT+TGG + chr7_1:40178096-40178115 None:intergenic 30.0%
CAACAATGCATATATATGAG+AGG - chr7_1:40178094-40178113 Msa1019020:five_prime_UTR 30.0%
!! TTTGGAAAGAGTGTTAGAGA+AGG + chr7_1:40170978-40170997 None:intergenic 35.0%
ATAGCTATGTCAAGTCATTG+GGG - chr7_1:40171133-40171152 Msa1019020:intron 35.0%
GAAGTTCAACTTGTGTAAAC+TGG + chr7_1:40171189-40171208 None:intergenic 35.0%
TTTCATTGCAATTCAGCTTC+TGG - chr7_1:40171464-40171483 Msa1019020:intron 35.0%
TTCATTGCAATTCAGCTTCT+GGG - chr7_1:40171465-40171484 Msa1019020:intron 35.0%
TATCTTGCAAACCAAGCAAT+AGG + chr7_1:40171523-40171542 None:intergenic 35.0%
TTCATTGCAATTCAGCTTCT+TGG - chr7_1:40171465-40171484 Msa1019020:intron 35.0%
TATTGCAGTTCATGATCATG+AGG - chr7_1:40171807-40171826 Msa1019020:intron 35.0%
!!! AGCCAACTTTTGAAGTGTAT+TGG - chr7_1:40172027-40172046 Msa1019020:intron 35.0%
GCACTTACACTTCAAATTGA+GGG + chr7_1:40172369-40172388 None:intergenic 35.0%
AGCACTTACACTTCAAATTG+AGG + chr7_1:40172370-40172389 None:intergenic 35.0%
CATGCTACAGAAAAAATGCA+GGG + chr7_1:40172492-40172511 None:intergenic 35.0%
ACATGCTACAGAAAAAATGC+AGG + chr7_1:40172493-40172512 None:intergenic 35.0%
CTTTAATGCCAAACACCATA+AGG - chr7_1:40172553-40172572 Msa1019020:intron 35.0%
!!! ACTTTTGCAAGTTCTAGAAC+AGG - chr7_1:40172659-40172678 Msa1019020:intron 35.0%
CAAAACGATTACTTAACCCT+TGG - chr7_1:40173036-40173055 Msa1019020:intron 35.0%
CTCAAGACTTAATTGAAGGA+AGG - chr7_1:40173132-40173151 Msa1019020:intron 35.0%
!!! CTCAACAAGATTTTTTCTGG+TGG + chr7_1:40173787-40173806 None:intergenic 35.0%
AAATTTCTCCTCCGATGTTA+AGG - chr7_1:40173855-40173874 Msa1019020:CDS 35.0%
!! TGTCGATGGATTAGTGTATT+CGG + chr7_1:40174200-40174219 None:intergenic 35.0%
! TTTTTCACAGCTAATGTCGA+TGG + chr7_1:40174214-40174233 None:intergenic 35.0%
TCTTGAACATGCTGAAAAGA+TGG - chr7_1:40174258-40174277 Msa1019020:intron 35.0%
CTTGAACATGCTGAAAAGAT+GGG - chr7_1:40174259-40174278 Msa1019020:intron 35.0%
ACTGCAAGAGATATAGTTGA+AGG - chr7_1:40174298-40174317 Msa1019020:intron 35.0%
ACAAAAGCAAGGTTCAGATT+TGG + chr7_1:40174328-40174347 None:intergenic 35.0%
CAAGTTCTTTGTAACAGGAA+TGG - chr7_1:40174436-40174455 Msa1019020:CDS 35.0%
TATCATCTAGCAATGAGTCA+AGG + chr7_1:40174492-40174511 None:intergenic 35.0%
GCTCATATTCGCTTACAAAT+GGG - chr7_1:40174678-40174697 Msa1019020:CDS 35.0%
TCACGAGTAAACTTGTAAAC+TGG - chr7_1:40174713-40174732 Msa1019020:CDS 35.0%
ATCTTCCAATTAACAATCCC+AGG + chr7_1:40175095-40175114 None:intergenic 35.0%
! GTTTCCCAATTTTCACAACT+TGG + chr7_1:40175169-40175188 None:intergenic 35.0%
AACTTGAGATTTCACTCTCA+TGG - chr7_1:40175516-40175535 Msa1019020:intron 35.0%
ACTTGAGATTTCACTCTCAT+GGG - chr7_1:40175517-40175536 Msa1019020:intron 35.0%
CTGATTCTGATATTCTGCAA+TGG - chr7_1:40175550-40175569 Msa1019020:CDS 35.0%
AAATGGCATGGTTTGATTGT+TGG - chr7_1:40176264-40176283 Msa1019020:CDS 35.0%
!!! TTGCATTTTGAAGCCCATAT+GGG - chr7_1:40176319-40176338 Msa1019020:CDS 35.0%
TTACTAAAATGCCCCCATAT+GGG + chr7_1:40176335-40176354 None:intergenic 35.0%
TTTACTAAAATGCCCCCATA+TGG + chr7_1:40176336-40176355 None:intergenic 35.0%
! CCAAACCTAGAGTTTTTCTA+GGG - chr7_1:40176366-40176385 Msa1019020:intron 35.0%
GTAAACCCTAGAAAAACTCT+AGG + chr7_1:40176374-40176393 None:intergenic 35.0%
AATCCCTGAATACATACAAG+TGG + chr7_1:40176636-40176655 None:intergenic 35.0%
TCAGTCTGAAAATCATGTGA+TGG + chr7_1:40176870-40176889 None:intergenic 35.0%
! ACAGTTAGAATCTGAAGCAA+AGG + chr7_1:40177129-40177148 None:intergenic 35.0%
! GAAAAAGTGTATTTAAGCCG+GGG + chr7_1:40177461-40177480 None:intergenic 35.0%
!! ACTCTAACCAAAGCTTTAGA+AGG + chr7_1:40177515-40177534 None:intergenic 35.0%
TCATGAAATTCTCTCAAGTG+GGG - chr7_1:40177561-40177580 Msa1019020:intron 35.0%
! TCTTTTCTTCAACAACAGCA+GGG + chr7_1:40177956-40177975 None:intergenic 35.0%
AGAAAAGACAAGTTCAGATG+TGG - chr7_1:40177968-40177987 Msa1019020:five_prime_UTR 35.0%
TGAACTATGACAGCTCTTTC+CGG - chr7_1:40170925-40170944 Msa1019020:three_prime_UTR 40.0%
! TGGAACAAGGACACCATTTT+GGG + chr7_1:40170952-40170971 None:intergenic 40.0%
! ATGGAACAAGGACACCATTT+TGG + chr7_1:40170953-40170972 None:intergenic 40.0%
TTAGAGAAGGAGATGGAACA+AGG + chr7_1:40170965-40170984 None:intergenic 40.0%
!! AAGAGTGTTAGAGAAGGAGA+TGG + chr7_1:40170972-40170991 None:intergenic 40.0%
!!! GTAAACTGGTTTTGAAGCCA+TGG + chr7_1:40171175-40171194 None:intergenic 40.0%
TTGAAGTGTAAGTGCTTCGT+AGG - chr7_1:40172374-40172393 Msa1019020:intron 40.0%
AAACTCATCAGCATTCCTCA+AGG - chr7_1:40172697-40172716 Msa1019020:intron 40.0%
TGTGTGAAGCAATGTTGTAG+TGG + chr7_1:40172726-40172745 None:intergenic 40.0%
!! CAAGAGGAAGGTATTTCTTG+AGG + chr7_1:40172814-40172833 None:intergenic 40.0%
CTCTTCGAAATCGCAAAAGA+CGG - chr7_1:40172851-40172870 Msa1019020:intron 40.0%
CAAAAGACGGTGTTCTTCTT+TGG - chr7_1:40172864-40172883 Msa1019020:intron 40.0%
CAATTGCTTTAGCAGAGTTG+AGG + chr7_1:40173088-40173107 None:intergenic 40.0%
CTCAACTCTGCTAAAGCAAT+TGG - chr7_1:40173086-40173105 Msa1019020:intron 40.0%
! TTGAGTGCCAATGTTGACTA+CGG + chr7_1:40173117-40173136 None:intergenic 40.0%
GGCACTCAAGACTTAATTGA+AGG - chr7_1:40173128-40173147 Msa1019020:intron 40.0%
AACAGTTACCTTAACATCGG+AGG + chr7_1:40173866-40173885 None:intergenic 40.0%
TATGATTCTTGTGGCGTTGT+AGG - chr7_1:40174135-40174154 Msa1019020:intron 40.0%
CGGATGCAAGAACATTTAGA+AGG + chr7_1:40174180-40174199 None:intergenic 40.0%
! AAGAGAGAGTTTTTCGCCTT+TGG - chr7_1:40174527-40174546 Msa1019020:CDS 40.0%
CGCCTTTGGATTAATAGTCT+TGG - chr7_1:40174541-40174560 Msa1019020:CDS 40.0%
! ACAATGTCTTTGAGGATGTC+CGG - chr7_1:40174581-40174600 Msa1019020:intron 40.0%
TTTCGATATTTCACCCGTTC+CGG + chr7_1:40174603-40174622 None:intergenic 40.0%
GGCTCATATTCGCTTACAAA+TGG - chr7_1:40174677-40174696 Msa1019020:CDS 40.0%
! TATAGCGGCTACTTTGCTAT+CGG - chr7_1:40174799-40174818 Msa1019020:CDS 40.0%
CAATGATCGATCACGATGTT+TGG + chr7_1:40174843-40174862 None:intergenic 40.0%
!! GCTTTTAGAGACTCTTGACA+AGG - chr7_1:40175064-40175083 Msa1019020:intron 40.0%
TGTCACCTGGGATTGTTAAT+TGG - chr7_1:40175087-40175106 Msa1019020:intron 40.0%
CTTCACACTAAAGTCGTGTA+TGG - chr7_1:40175287-40175306 Msa1019020:intron 40.0%
TGTCTGACACAAACACATGT+CGG + chr7_1:40175316-40175335 None:intergenic 40.0%
GTTTGGGCCTTAGTTTCATA+AGG - chr7_1:40175403-40175422 Msa1019020:intron 40.0%
AACACCAAAGTGAGAAACTC+AGG - chr7_1:40175576-40175595 Msa1019020:intron 40.0%
CATATGGGCTTCAAAATGCA+AGG + chr7_1:40176320-40176339 None:intergenic 40.0%
!!! CTTGCATTTTGAAGCCCATA+TGG - chr7_1:40176318-40176337 Msa1019020:CDS 40.0%
!!! TGCATTTTGAAGCCCATATG+GGG - chr7_1:40176320-40176339 Msa1019020:CDS 40.0%
AAAAACTCTAGGTTTGGCCA+TGG + chr7_1:40176363-40176382 None:intergenic 40.0%
! GCCAAACCTAGAGTTTTTCT+AGG - chr7_1:40176365-40176384 Msa1019020:CDS 40.0%
CCCTAGAAAAACTCTAGGTT+TGG + chr7_1:40176369-40176388 None:intergenic 40.0%
! TGATCGATTGTAGTTTGTCG+TGG + chr7_1:40176449-40176468 None:intergenic 40.0%
CTCTAGGTTGTACAGAACTA+AGG + chr7_1:40176742-40176761 None:intergenic 40.0%
TACAACCTAGAGCTGTGAAT+TGG - chr7_1:40176750-40176769 Msa1019020:intron 40.0%
ACAACCTAGAGCTGTGAATT+GGG - chr7_1:40176751-40176770 Msa1019020:intron 40.0%
! AATTGGGGTCTTGTGACAAA+AGG - chr7_1:40176767-40176786 Msa1019020:intron 40.0%
CTTGTGACAAAAGGAGTAAC+TGG - chr7_1:40176776-40176795 Msa1019020:intron 40.0%
! CATATTTATTGGTGTCTCCC+CGG - chr7_1:40177441-40177460 Msa1019020:intron 40.0%
! CTTTAGAAGGAACAAGGTCT+CGG + chr7_1:40177502-40177521 None:intergenic 40.0%
!! CCAAAGCTTTAGAAGGAACA+AGG + chr7_1:40177508-40177527 None:intergenic 40.0%
!! CCTTGTTCCTTCTAAAGCTT+TGG - chr7_1:40177505-40177524 Msa1019020:intron 40.0%
! GTCTTTTCTTCAACAACAGC+AGG + chr7_1:40177957-40177976 None:intergenic 40.0%
ATGATCATGAGGAGAGAGAG+TGG - chr7_1:40171818-40171837 Msa1019020:intron 45.0%
TGATCATGAGGAGAGAGAGT+GGG - chr7_1:40171819-40171838 Msa1019020:intron 45.0%
GAGAGTGGGAAGCTTACAAT+TGG - chr7_1:40171833-40171852 Msa1019020:intron 45.0%
ATGTTGTAGTGGCAACCTTG+AGG + chr7_1:40172715-40172734 None:intergenic 45.0%
CACAATAAGCGAATCCGAGA+AGG - chr7_1:40172742-40172761 Msa1019020:intron 45.0%
TGTAACATACGACGCCTTCT+CGG + chr7_1:40172759-40172778 None:intergenic 45.0%
TGGTTGAAGGATCAAGAGGA+AGG + chr7_1:40172826-40172845 None:intergenic 45.0%
! TCGTTGGTTGAAGGATCAAG+AGG + chr7_1:40172830-40172849 None:intergenic 45.0%
! TCGAAGAGATCGTTGGTTGA+AGG + chr7_1:40172839-40172858 None:intergenic 45.0%
TGCGATTTCGAAGAGATCGT+TGG + chr7_1:40172846-40172865 None:intergenic 45.0%
GGATGTACCGTAGTCAACAT+TGG - chr7_1:40173107-40173126 Msa1019020:intron 45.0%
ATGTGTGACGAGGAATCGAA+AGG + chr7_1:40173330-40173349 None:intergenic 45.0%
TCCTCGTCACACATGTAACT+AGG - chr7_1:40173336-40173355 Msa1019020:intron 45.0%
TCCTAGTTACATGTGTGACG+AGG + chr7_1:40173340-40173359 None:intergenic 45.0%
!! TTTCAGCGTCATTTGGTGCT+TGG - chr7_1:40173438-40173457 Msa1019020:CDS 45.0%
!!! AACTCCTCAACTTTTGGAGC+TGG - chr7_1:40173637-40173656 Msa1019020:intron 45.0%
!!! AACTTTTGGAGCTGGTTGGT+TGG - chr7_1:40173645-40173664 Msa1019020:intron 45.0%
!!! ACTTTTGGAGCTGGTTGGTT+GGG - chr7_1:40173646-40173665 Msa1019020:intron 45.0%
GCTGGAAATGACATTGTGCA+AGG - chr7_1:40175215-40175234 Msa1019020:CDS 45.0%
GACGTGTCAATGTCGTGTTT+GGG - chr7_1:40175387-40175406 Msa1019020:CDS 45.0%
GAGATTTCACTCTCATGGGA+AGG - chr7_1:40175521-40175540 Msa1019020:intron 45.0%
GCTTCCTGAGTTTCTCACTT+TGG + chr7_1:40175583-40175602 None:intergenic 45.0%
!!! GCATTTTGAAGCCCATATGG+GGG - chr7_1:40176321-40176340 Msa1019020:CDS 45.0%
CAACCTAGAGCTGTGAATTG+GGG - chr7_1:40176752-40176771 Msa1019020:intron 45.0%
CGGGGAGACACCAATAAATA+TGG + chr7_1:40177443-40177462 None:intergenic 45.0%
ACTACCTCAGTGATGTCTTC+AGG + chr7_1:40177791-40177810 None:intergenic 45.0%
!!! AAAATCTAATTTTTTTTTTT+TGG + chr7_1:40171292-40171311 None:intergenic 5.0%
!!! AAATCTAATTTTATTTTTTT+TGG + chr7_1:40171437-40171456 None:intergenic 5.0%
AGCTCTTTCCGGTCCCAAAA+TGG - chr7_1:40170936-40170955 Msa1019020:three_prime_UTR 50.0%
!!! CAAGGACACCATTTTGGGAC+CGG + chr7_1:40170947-40170966 None:intergenic 50.0%
!! ACTGACTCGAAGCACTGACT+CGG - chr7_1:40172246-40172265 Msa1019020:CDS 50.0%
GCGCGTTCATCGATAGTTGT+CGG + chr7_1:40173008-40173027 None:intergenic 50.0%
CCAACCAGCTCCAAAAGTTG+AGG + chr7_1:40173644-40173663 None:intergenic 50.0%
!!! CCTCAACTTTTGGAGCTGGT+TGG - chr7_1:40173641-40173660 Msa1019020:intron 50.0%
! GCTGGTTGGTTGGGATAGTA+AGG - chr7_1:40173655-40173674 Msa1019020:intron 50.0%
! GTCTTTGAGGATGTCCGGAA+CGG - chr7_1:40174586-40174605 Msa1019020:intron 50.0%
! TCTTTGAGGATGTCCGGAAC+GGG - chr7_1:40174587-40174606 Msa1019020:intron 50.0%
! ACTCTTGACAAGGTGTCACC+TGG - chr7_1:40175074-40175093 Msa1019020:intron 50.0%
! CTCTTGACAAGGTGTCACCT+GGG - chr7_1:40175075-40175094 Msa1019020:intron 50.0%
GTTTGTGTCAGACACCGACA+AGG - chr7_1:40175322-40175341 Msa1019020:intron 50.0%
CGACGTGTCAATGTCGTGTT+TGG - chr7_1:40175386-40175405 Msa1019020:CDS 50.0%
AGACCCCAATTCACAGCTCT+AGG + chr7_1:40176758-40176777 None:intergenic 50.0%
GCTTCCTGAAGACATCACTG+AGG - chr7_1:40177784-40177803 Msa1019020:intron 50.0%
TCATTGACCCGTGCGAAGCA+CGG + chr7_1:40175960-40175979 None:intergenic 55.0%
CATTGACCCGTGCGAAGCAC+GGG + chr7_1:40175959-40175978 None:intergenic 60.0%
TCGCACTCCCGTGCTTCGCA+CGG - chr7_1:40175949-40175968 Msa1019020:CDS 65.0%
CGCACTCCCGTGCTTCGCAC+GGG - chr7_1:40175950-40175969 Msa1019020:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 40170891 40178134 40170891 ID=Msa1019020;Name=Msa1019020
chr7_1 mRNA 40170891 40178134 40170891 ID=Msa1019020-mRNA-1;Parent=Msa1019020;Name=Msa1019020-mRNA-1;_AED=0.04;_eAED=0.04;_QI=248|1|1|1|1|1|14|79|659
chr7_1 exon 40170891 40171131 40170891 ID=Msa1019020-mRNA-1:exon:7760;Parent=Msa1019020-mRNA-1
chr7_1 exon 40171220 40171311 40171220 ID=Msa1019020-mRNA-1:exon:7759;Parent=Msa1019020-mRNA-1
chr7_1 exon 40172228 40172324 40172228 ID=Msa1019020-mRNA-1:exon:7758;Parent=Msa1019020-mRNA-1
chr7_1 exon 40173399 40173556 40173399 ID=Msa1019020-mRNA-1:exon:7757;Parent=Msa1019020-mRNA-1
chr7_1 exon 40173768 40173967 40173768 ID=Msa1019020-mRNA-1:exon:7756;Parent=Msa1019020-mRNA-1
chr7_1 exon 40174417 40174572 40174417 ID=Msa1019020-mRNA-1:exon:7755;Parent=Msa1019020-mRNA-1
chr7_1 exon 40174657 40174868 40174657 ID=Msa1019020-mRNA-1:exon:7754;Parent=Msa1019020-mRNA-1
chr7_1 exon 40175149 40175265 40175149 ID=Msa1019020-mRNA-1:exon:7753;Parent=Msa1019020-mRNA-1
chr7_1 exon 40175349 40175420 40175349 ID=Msa1019020-mRNA-1:exon:7752;Parent=Msa1019020-mRNA-1
chr7_1 exon 40175543 40175581 40175543 ID=Msa1019020-mRNA-1:exon:7751;Parent=Msa1019020-mRNA-1
chr7_1 exon 40175871 40176042 40175871 ID=Msa1019020-mRNA-1:exon:7750;Parent=Msa1019020-mRNA-1
chr7_1 exon 40176140 40176384 40176140 ID=Msa1019020-mRNA-1:exon:7749;Parent=Msa1019020-mRNA-1
chr7_1 exon 40177040 40177210 40177040 ID=Msa1019020-mRNA-1:exon:7748;Parent=Msa1019020-mRNA-1
chr7_1 exon 40177800 40178134 40177800 ID=Msa1019020-mRNA-1:exon:7747;Parent=Msa1019020-mRNA-1
chr7_1 five_prime_UTR 40177887 40178134 40177887 ID=Msa1019020-mRNA-1:five_prime_utr;Parent=Msa1019020-mRNA-1
chr7_1 CDS 40177800 40177886 40177800 ID=Msa1019020-mRNA-1:cds;Parent=Msa1019020-mRNA-1
chr7_1 CDS 40177040 40177210 40177040 ID=Msa1019020-mRNA-1:cds;Parent=Msa1019020-mRNA-1
chr7_1 CDS 40176140 40176384 40176140 ID=Msa1019020-mRNA-1:cds;Parent=Msa1019020-mRNA-1
chr7_1 CDS 40175871 40176042 40175871 ID=Msa1019020-mRNA-1:cds;Parent=Msa1019020-mRNA-1
chr7_1 CDS 40175543 40175581 40175543 ID=Msa1019020-mRNA-1:cds;Parent=Msa1019020-mRNA-1
chr7_1 CDS 40175349 40175420 40175349 ID=Msa1019020-mRNA-1:cds;Parent=Msa1019020-mRNA-1
chr7_1 CDS 40175149 40175265 40175149 ID=Msa1019020-mRNA-1:cds;Parent=Msa1019020-mRNA-1
chr7_1 CDS 40174657 40174868 40174657 ID=Msa1019020-mRNA-1:cds;Parent=Msa1019020-mRNA-1
chr7_1 CDS 40174417 40174572 40174417 ID=Msa1019020-mRNA-1:cds;Parent=Msa1019020-mRNA-1
chr7_1 CDS 40173768 40173967 40173768 ID=Msa1019020-mRNA-1:cds;Parent=Msa1019020-mRNA-1
chr7_1 CDS 40173399 40173556 40173399 ID=Msa1019020-mRNA-1:cds;Parent=Msa1019020-mRNA-1
chr7_1 CDS 40172228 40172324 40172228 ID=Msa1019020-mRNA-1:cds;Parent=Msa1019020-mRNA-1
chr7_1 CDS 40171220 40171311 40171220 ID=Msa1019020-mRNA-1:cds;Parent=Msa1019020-mRNA-1
chr7_1 CDS 40170970 40171131 40170970 ID=Msa1019020-mRNA-1:cds;Parent=Msa1019020-mRNA-1
chr7_1 three_prime_UTR 40170891 40170969 40170891 ID=Msa1019020-mRNA-1:three_prime_utr;Parent=Msa1019020-mRNA-1
Gene Sequence

>Msa1019020

ATGTCAAGTCATTGGGGTATTATAGTTTCAGATCCATGGCTTCAAAACCAGTTTACACAAGTTGAACTTCGCAGCTTAAAATCACAATTCATGATCATGAGGAGAGAGAGTGGGAAGCTTACAATTGGAGACTTGTCTTCGAAGATGTCAAGATTGAAAGTTGTAGGAGAAAATCTTAGCGAAGAAGAGAGAGATTCTTATATCAATGATTTGTATACGAAATCAGATGAAGATGTTGATTTTGAATTGTTTCTCAAGGTTTACTTGAAACTGCAAACTTTTGCAAGTTCTAGAACAGGAAGCAATAATGCAAAAAACTCATCAGCATTCCTCAAGGTTGCCACTACAACATTGCTTCACACAATAAGCGAATCCGAGAAGGCGTCGTATGTTACACATATAAATAACTATCTTGCAGAAGATGAATTCCTCAAGAAATACCTTCCTCTTGATCCTTCAACCAACGATCTCTTCGAAATCGCAAAAGACGGTGTTCTTCTTTGTAAACTTATTAATGTGGCAGTTCCGACAACTATCGATGAACGCGCAATCAATACAAAACGATTACTTAACCCTTGGGAAAGAAATGAAAATCACACACTTTGCCTCAACTCTGCTAAAGCAATTGGATGTACCGTAGTCAACATTGGCACTCAAGACTTAATTGAAGGAAGGCGTCATTTGGTGCTTGGTTTGATTTCACAGATTATTAAGATACAATTATTGGCGAATCTGAACCTAAAGAAAACTCCTCAACTTTTGGAGCTGGTTGGTTGGGATAGTAAGGATATGGAAGAGTTGATGAGTCTACCACCAGAAAAAATCTTGTTGAGATGGATGAATTTCCATTTGAAGAAAACAGAATATAAGAAGATTGTCGCAAATTTCTCCTCCGATGTTAAGGATGCAGAAGCTTACGCACACCTTCTAAATGTTCTTGCATCCGAATACACTAATCCATCGACATTAGCTGTGAAAAATCCGTTTGAAAGAGCAAAACTAGTTCTTGAACATGCTGAAAAGATGGGTTGCAAGAGATACTTAACTGCAAGAGATATAGTTGAAGGTTCACCAAATCTGAACCTTGCTTTTGTTGCACATATTTTCCAAATCAGGAATGGACTTTCAACTCTAGCAAAACAAAGTTCTCTCCTTGACTCATTGCTAGATGATACTCAAGACTCAAGAGAAGAGAGAGTTTTTCGCCTTTGGATTAATAGTCTTGGAAATTCAACATATATCAACAATGTCTTTGAGGATGTCCGGAACGGGTGGGTGCTTTTAGAGACTCTTGACAAGGTGTCACCTGGGATTGTTAATTGGAAGATTGCAAACAAGCCTCCTATAAAGATGCCATTTAAAAAAGTAGAGAATTGTAACCAAGTTGTGAAAATTGGGAAACAACTTAAGTTTTCCTTGGTAAATATTGCTGGAAATGACATTGTGCAAGGATATAAAAAATTAATACTAGCATATTTGTGGCAATTGATGAGATGCAATATCCTACAACTTCTAAAGAACTTGAGATTTCACTCTCATGGGAAGGAAATAACTGATTCTGATATTCTGCAATGGGCAAACACCAAAGTGAGAAACTCAGGAAGCCAAAGCCATATATATAGTTTCAAGGATAAAAGTTTATCAGATGGAATATTTTTTCTGGAGCTCCTTAGTTCTGTACAACCTAGAGCTGTGAATTGGGGTCTTGTGACAAAAGGAGTAACTGATCAAGAGAAAATGATGAATGCTACCTACATTATCAGTATTGCAAGAAAACTTGGTTGCTCAATATTCTTGCTTCCTGAAGACATCACTGAGGTAAATCAGAAGATGATCCTTACACTAACAGCAAGTATAATGTATTGGTTCTTAAAACACCCTGCTGTTGTTGAAGAAAAGACAAGTTCAGATGTGGAGACCATATCAAATTCAACACTTGATGATTCTGCTTCTGATTTTTCAGCAGAAGAGAACATGTAA

Protein sequence

>Msa1019020

MSSHWGIIVSDPWLQNQFTQVELRSLKSQFMIMRRESGKLTIGDLSSKMSRLKVVGENLSEEERDSYINDLYTKSDEDVDFELFLKVYLKLQTFASSRTGSNNAKNSSAFLKVATTTLLHTISESEKASYVTHINNYLAEDEFLKKYLPLDPSTNDLFEIAKDGVLLCKLINVAVPTTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDLIEGRRHLVLGLISQIIKIQLLANLNLKKTPQLLELVGWDSKDMEELMSLPPEKILLRWMNFHLKKTEYKKIVANFSSDVKDAEAYAHLLNVLASEYTNPSTLAVKNPFERAKLVLEHAEKMGCKRYLTARDIVEGSPNLNLAFVAHIFQIRNGLSTLAKQSSLLDSLLDDTQDSREERVFRLWINSLGNSTYINNVFEDVRNGWVLLETLDKVSPGIVNWKIANKPPIKMPFKKVENCNQVVKIGKQLKFSLVNIAGNDIVQGYKKLILAYLWQLMRCNILQLLKNLRFHSHGKEITDSDILQWANTKVRNSGSQSHIYSFKDKSLSDGIFFLELLSSVQPRAVNWGLVTKGVTDQEKMMNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMYWFLKHPAVVEEKTSSDVETISNSTLDDSASDFSAEENM*