AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1147570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1147570 MtrunA17_Chr7g0234481 76.396 555 70 8 59 565 122 663 0.0 774
Msa1147570 MtrunA17_Chr7g0234481 98.780 164 2 0 1 164 1 164 1.56e-105 331
Msa1147570 MtrunA17_Chr8g0338551 76.818 440 61 3 165 564 225 663 0.0 661
Msa1147570 MtrunA17_Chr8g0338551 82.927 164 27 1 1 164 1 163 8.90e-86 280
Msa1147570 MtrunA17_Chr5g0448051 66.990 412 97 4 153 530 215 621 0.0 549
Msa1147570 MtrunA17_Chr5g0448051 51.829 164 77 1 1 164 1 162 1.23e-44 167
Msa1147570 MtrunA17_Chr5g0445111 62.471 429 126 3 163 557 221 648 0.0 537
Msa1147570 MtrunA17_Chr5g0445111 54.268 164 73 1 1 164 1 162 1.88e-45 170
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1147570 AT5G35700.1 53.292 638 201 5 1 544 1 635 0.0 665
Msa1147570 AT5G48460.1 71.167 437 91 3 159 562 220 654 0.0 624
Msa1147570 AT5G48460.1 64.848 165 56 2 1 164 1 164 3.14e-62 217
Msa1147570 AT4G26700.7 63.768 414 110 6 153 532 67 474 5.36e-180 518
Msa1147570 AT2G04750.1 60.771 441 131 4 159 558 212 651 2.58e-178 518
Msa1147570 AT2G04750.1 40.704 199 105 2 1 199 1 186 8.84e-40 154
Msa1147570 AT4G26700.4 63.768 414 110 6 153 532 216 623 5.95e-178 519
Msa1147570 AT4G26700.4 50.000 164 81 1 1 164 1 163 1.10e-46 174
Msa1147570 AT4G26700.2 63.768 414 110 6 153 532 216 623 5.95e-178 519
Msa1147570 AT4G26700.2 50.000 164 81 1 1 164 1 163 1.10e-46 174
Msa1147570 AT4G26700.1 63.768 414 110 6 153 532 216 623 5.95e-178 519
Msa1147570 AT4G26700.1 50.000 164 81 1 1 164 1 163 1.10e-46 174
Msa1147570 AT5G55400.1 62.319 414 116 5 153 532 217 624 4.84e-175 512
Msa1147570 AT5G55400.1 52.410 166 75 3 1 164 1 164 3.37e-45 170
Msa1147570 AT5G55400.2 62.319 414 116 5 153 532 217 624 4.84e-175 512
Msa1147570 AT5G55400.2 52.410 166 75 3 1 164 1 164 3.37e-45 170
Msa1147570 AT5G55400.3 62.319 414 116 5 153 532 217 624 4.84e-175 512
Msa1147570 AT5G55400.3 52.410 166 75 3 1 164 1 164 3.37e-45 170
Msa1147570 AT4G26700.5 61.708 363 99 6 153 481 216 572 3.61e-145 431
Msa1147570 AT4G26700.5 50.000 164 81 1 1 164 1 163 4.13e-47 174
Msa1147570 AT4G26700.6 61.708 363 99 6 153 481 216 572 3.61e-145 431
Msa1147570 AT4G26700.6 50.000 164 81 1 1 164 1 163 4.13e-47 174
Msa1147570 AT4G26700.3 61.708 363 99 6 153 481 216 572 3.61e-145 431
Msa1147570 AT4G26700.3 50.000 164 81 1 1 164 1 163 4.13e-47 174

Find 90 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAACCAAGTTGTGAAAAT+TGG 0.132470 7_4:-26944586 Msa1147570:CDS
ATGGAACAAGGACACCATTT+TGG 0.212285 7_4:+26948798 None:intergenic
ATTATTATTATCACCTGATT+TGG 0.218067 7_4:+26945387 None:intergenic
GTTAAATTAGATACAATTAT+TGG 0.249136 7_4:-26946152 Msa1147570:intron
AAAGAAAACTCCTCAACTTT+TGG 0.252764 7_4:-26946116 Msa1147570:CDS
ATTATGTTACTTCTGTATTT+TGG 0.257711 7_4:+26948671 None:intergenic
TTTGATTTCACAGATTATTA+AGG 0.291528 7_4:-26946286 Msa1147570:intron
TGTCACCTGGGATTGTTAAT+TGG 0.292139 7_4:-26944660 Msa1147570:CDS
GTCATAGTTCAAAGTTGTTT+TGG 0.296144 7_4:+26948835 None:intergenic
TGAACTATGACAGCTCTTTC+CGG 0.298820 7_4:-26948823 Msa1147570:five_prime_UTR
ATACCTTGAAACTATATATA+TGG 0.335185 7_4:+26944139 None:intergenic
TACAACCTAGAGCTGTGAAT+TGG 0.353089 7_4:-26942997 Msa1147570:CDS
CTCTCATATATATGCATTGT+TGG 0.360211 7_4:+26941654 None:intergenic
ATCAAGTGTTGAATTTGATA+TGG 0.364286 7_4:+26941753 None:intergenic
AGCTCTTTCCGGTCCCAAAA+TGG 0.367637 7_4:-26948812 Msa1147570:five_prime_UTR
TGAAACTATATATATGGCTT+TGG 0.379514 7_4:+26944145 None:intergenic
TTTCGATATTTCACCCGTTC+CGG 0.380068 7_4:+26945147 None:intergenic
TATAGCTATGTCAAGTCATT+GGG 0.381643 7_4:-26948616 Msa1147570:exon
GTAACCAAGTTGTGAAAATT+GGG 0.383144 7_4:-26944585 Msa1147570:CDS
ACAACCTAGAGCTGTGAATT+GGG 0.394703 7_4:-26942996 Msa1147570:CDS
CGCCTTTGGATTAATAGTCT+TGG 0.397407 7_4:-26945206 Msa1147570:CDS
TGTAACATACGACGCCTTCT+CGG 0.401302 7_4:+26946991 None:intergenic
ACAAAAGCAAGGTTCAGATT+TGG 0.404910 7_4:+26945422 None:intergenic
GAAGTTCAACTTGTGTAAAC+TGG 0.405591 7_4:+26948562 None:intergenic
ATGTCAAGATTGAAAGTTGT+AGG 0.408316 7_4:-26947875 Msa1147570:CDS
AAATTTCTCCTCCGATGTTA+AGG 0.410735 7_4:-26945892 Msa1147570:intron
ATCAGTATTGCAAGAAAACT+TGG 0.410928 7_4:-26942001 Msa1147570:CDS
ACTACCTCAGTGATGTCTTC+AGG 0.412757 7_4:+26941959 None:intergenic
TGTCGATGGATTAGTGTATT+CGG 0.420155 7_4:+26945550 None:intergenic
CTTGTGACAAAAGGAGTAAC+TGG 0.423464 7_4:-26942971 Msa1147570:intron
TCTTGAACATGCTGAAAAGA+TGG 0.429194 7_4:-26945489 Msa1147570:CDS
CGGATGCAAGAACATTTAGA+AGG 0.432762 7_4:+26945570 None:intergenic
TTTCAGCGTCATTTGGTGCT+TGG 0.433419 7_4:-26946309 Msa1147570:intron
TTATACTTGCTGTTAGTGTA+AGG 0.443705 7_4:+26941836 None:intergenic
TTATAGCTATGTCAAGTCAT+TGG 0.445158 7_4:-26948617 Msa1147570:exon
AACTTGAGATTTCACTCTCA+TGG 0.447009 7_4:-26944231 Msa1147570:CDS
GAGAGTGGGAAGCTTACAAT+TGG 0.450186 7_4:-26947914 Msa1147570:CDS
ATATATCAACAATGTCTTTG+AGG 0.451615 7_4:-26945174 Msa1147570:CDS
ACTGCAAGAGATATAGTTGA+AGG 0.456956 7_4:-26945449 Msa1147570:CDS
GCTTCCTGAGTTTCTCACTT+TGG 0.460272 7_4:+26944167 None:intergenic
AAGCCATATATATAGTTTCA+AGG 0.477750 7_4:-26944142 Msa1147570:intron
TGATTCTGATATTCTGCAAT+GGG 0.477771 7_4:-26944196 Msa1147570:CDS
ACTCTTGACAAGGTGTCACC+TGG 0.480499 7_4:-26944673 Msa1147570:CDS
GTATTATAGTTTCAGATCCA+TGG 0.487713 7_4:-26948593 Msa1147570:CDS
GCTGGTTGGTTGGGATAGTA+AGG 0.490164 7_4:-26946092 Msa1147570:intron
ACAATGTCTTTGAGGATGTC+CGG 0.491002 7_4:-26945166 Msa1147570:CDS
TCTTGCAATACTGATAATGT+AGG 0.492990 7_4:+26942009 None:intergenic
AAGAGTGTTAGAGAAGGAGA+TGG 0.497113 7_4:+26948779 None:intergenic
TCTTTGAGGATGTCCGGAAC+GGG 0.497370 7_4:-26945160 Msa1147570:intron
ACTTGAGATTTCACTCTCAT+GGG 0.506566 7_4:-26944230 Msa1147570:CDS
TTTGGAAAGAGTGTTAGAGA+AGG 0.507870 7_4:+26948773 None:intergenic
TCGAAGAGATCGTTGGTTGA+AGG 0.509178 7_4:+26946911 None:intergenic
TAACAGCAAGTATAATGTAT+TGG 0.514555 7_4:-26941828 Msa1147570:CDS
CACAATAAGCGAATCCGAGA+AGG 0.518667 7_4:-26947005 Msa1147570:CDS
CAGGATAAAAGTTTATCAGA+TGG 0.519978 7_4:-26943049 Msa1147570:CDS
CTCTAGGTTGTACAGAACTA+AGG 0.521248 7_4:+26943008 None:intergenic
ATCTTCCAATTAACAATCCC+AGG 0.521674 7_4:+26944655 None:intergenic
TTCCAAGACTATTAATCCAA+AGG 0.523555 7_4:+26945204 None:intergenic
TTAAATGGCATCTTTATAGG+AGG 0.524199 7_4:+26944622 None:intergenic
CTGATTCTGATATTCTGCAA+TGG 0.530863 7_4:-26944197 Msa1147570:CDS
TGCGATTTCGAAGAGATCGT+TGG 0.536044 7_4:+26946904 None:intergenic
GTCTTTGAGGATGTCCGGAA+CGG 0.548304 7_4:-26945161 Msa1147570:CDS
TATACATAGACTCATTGCAT+TGG 0.561303 7_4:-26948712 Msa1147570:five_prime_UTR
CAAGAGGAAGGTATTTCTTG+AGG 0.564052 7_4:+26946936 None:intergenic
ATGATCATGAGGAGAGAGAG+TGG 0.567935 7_4:-26947929 Msa1147570:CDS
GAGATTTCACTCTCATGGGA+AGG 0.568367 7_4:-26944226 Msa1147570:CDS
CTTGAACATGCTGAAAAGAT+GGG 0.573699 7_4:-26945488 Msa1147570:CDS
AACACCAAAGTGAGAAACTC+AGG 0.580483 7_4:-26944171 Msa1147570:CDS
AGACCCCAATTCACAGCTCT+AGG 0.587212 7_4:+26942992 None:intergenic
AATTGGGGTCTTGTGACAAA+AGG 0.587266 7_4:-26942980 Msa1147570:CDS
AGAAAAGACAAGTTCAGATG+TGG 0.588501 7_4:-26941779 Msa1147570:CDS
CTCTTGACAAGGTGTCACCT+GGG 0.592426 7_4:-26944672 Msa1147570:CDS
CTCTTCGAAATCGCAAAAGA+CGG 0.602850 7_4:-26946896 Msa1147570:CDS
TTAGAGAAGGAGATGGAACA+AGG 0.609993 7_4:+26948786 None:intergenic
TGATCATGAGGAGAGAGAGT+GGG 0.613913 7_4:-26947928 Msa1147570:CDS
AAATATGTGCAACAAAAGCA+AGG 0.619112 7_4:+26945411 None:intergenic
CAACCTAGAGCTGTGAATTG+GGG 0.619563 7_4:-26942995 Msa1147570:CDS
AAACTCATCAGCATTCCTCA+AGG 0.625349 7_4:-26947050 Msa1147570:CDS
AACAGTTACCTTAACATCGG+AGG 0.628403 7_4:+26945884 None:intergenic
CCAACCAGCTCCAAAAGTTG+AGG 0.628409 7_4:+26946106 None:intergenic
CAACAATGCATATATATGAG+AGG 0.630849 7_4:-26941653 Msa1147570:three_prime_UTR
TATTGCAGTTCATGATCATG+AGG 0.630962 7_4:-26947940 Msa1147570:intron
TCGTTGGTTGAAGGATCAAG+AGG 0.643960 7_4:+26946920 None:intergenic
TGTGTGAAGCAATGTTGTAG+TGG 0.648045 7_4:+26947024 None:intergenic
ATAAACAGTTACCTTAACAT+CGG 0.650163 7_4:+26945881 None:intergenic
TATCATCTAGCAATGAGTCA+AGG 0.651529 7_4:+26945258 None:intergenic
TGGTTGAAGGATCAAGAGGA+AGG 0.651670 7_4:+26946924 None:intergenic
ATGTTGTAGTGGCAACCTTG+AGG 0.654723 7_4:+26947035 None:intergenic
ATAGCTATGTCAAGTCATTG+GGG 0.689294 7_4:-26948615 Msa1147570:exon
GCTTCCTGAAGACATCACTG+AGG 0.793102 7_4:-26941963 Msa1147570:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTTTACATTTTGT+AGG - chr7_4:26944134-26944153 Msa1147570:intron 10.0%
!!! TATTTTTTTTTATGTTTTAC+AGG - chr7_4:26945781-26945800 Msa1147570:intron 10.0%
!! AAATCTTATATATAAATGTA+AGG + chr7_4:26947153-26947172 None:intergenic 10.0%
!!! AAAAAATCTCTAAAAAATAT+GGG + chr7_4:26947707-26947726 None:intergenic 10.0%
!!! AAAAAAATCTCTAAAAAATA+TGG + chr7_4:26947708-26947727 None:intergenic 10.0%
!!! ATTTATTATTGTTTTTTTGA+GGG + chr7_4:26948078-26948097 None:intergenic 10.0%
!!! TATCTAAAAGTTGATAAAAA+AGG + chr7_4:26941753-26941772 None:intergenic 15.0%
!!! ATTTAAATCTAGTCTTTATT+TGG + chr7_4:26942338-26942357 None:intergenic 15.0%
!! AAATTAGTAGAAAGTAAAAA+AGG + chr7_4:26942846-26942865 None:intergenic 15.0%
!! GTAAAAATAAAAATAGAGAA+GGG + chr7_4:26944127-26944146 None:intergenic 15.0%
!! TGTAAAAATAAAAATAGAGA+AGG + chr7_4:26944128-26944147 None:intergenic 15.0%
!! GTTAAATTAGATACAATTAT+TGG - chr7_4:26944340-26944359 Msa1147570:intron 15.0%
!! TTCATACTTATTAAAATAAC+AGG - chr7_4:26944483-26944502 Msa1147570:intron 15.0%
!!! TTTTAATCATTCTTTCATTT+AGG - chr7_4:26945698-26945717 Msa1147570:intron 15.0%
!! GGATATAAAAAATTAATACT+AGG - chr7_4:26945981-26946000 Msa1147570:CDS 15.0%
!! AAATAAAAAATCAACCATAA+TGG + chr7_4:26946191-26946210 None:intergenic 15.0%
!!! TTTTTATTTTAGCATATTTG+TGG - chr7_4:26946202-26946221 Msa1147570:intron 15.0%
!! AAAGTTTACAAACTAATAAT+TGG + chr7_4:26946613-26946632 None:intergenic 15.0%
!! AAAAAGTTATTACAAATGTA+TGG + chr7_4:26947333-26947352 None:intergenic 15.0%
!!! TAAAAATTGTTTGAAATTTC+AGG - chr7_4:26947424-26947443 Msa1147570:intron 15.0%
!!! CATTTATTATTGTTTTTTTG+AGG + chr7_4:26948079-26948098 None:intergenic 15.0%
!!! ATAAATGATCCTTTATTTTT+TGG - chr7_4:26948092-26948111 Msa1147570:intron 15.0%
!!! CTGTTTAATTTGATAAATAA+TGG + chr7_4:26948412-26948431 None:intergenic 15.0%
!! TCAATGTATCATATTTATAT+AGG - chr7_4:26948617-26948636 Msa1147570:exon 15.0%
!!! ATTATGTTACTTCTGTATTT+TGG + chr7_4:26941824-26941843 None:intergenic 20.0%
!! ATTAAAAATCCAATCTTTCT+TGG + chr7_4:26942482-26942501 None:intergenic 20.0%
!!! CTTAAATTTTAATTCCCTTA+TGG + chr7_4:26943316-26943335 None:intergenic 20.0%
!! ATTTGAGTGATATGAAATAA+TGG - chr7_4:26943342-26943361 Msa1147570:intron 20.0%
!!! TATTTTTACATTTTGTAGGT+TGG - chr7_4:26944138-26944157 Msa1147570:intron 20.0%
!!! TTTGATTTCACAGATTATTA+AGG - chr7_4:26944206-26944225 Msa1147570:CDS 20.0%
!! CTTATTAAAATAACAGGATA+TGG - chr7_4:26944489-26944508 Msa1147570:intron 20.0%
!!! TATATTCTGTTTTCTTCAAA+TGG + chr7_4:26944567-26944586 None:intergenic 20.0%
!!! GATAGTTATTTTGAAATTGA+GGG + chr7_4:26944696-26944715 None:intergenic 20.0%
!! GTCTCTAAATATATTTAATG+TGG + chr7_4:26944792-26944811 None:intergenic 20.0%
!! ATTAAATATATTTAGAGACG+AGG - chr7_4:26944793-26944812 Msa1147570:intron 20.0%
!! ATTATTATTATCACCTGATT+TGG + chr7_4:26945108-26945127 None:intergenic 20.0%
!! CATATTTCATATGTTAACAA+AGG + chr7_4:26945149-26945168 None:intergenic 20.0%
!!! AGTTTTGTTCAAAAATACTA+TGG + chr7_4:26945485-26945504 None:intergenic 20.0%
!!! TTTTGTTAGAATAGTGATTA+TGG + chr7_4:26945643-26945662 None:intergenic 20.0%
!!! TTTTTTTTATGTTTTACAGG+TGG - chr7_4:26945784-26945803 Msa1147570:intron 20.0%
!!! TTTTTTTATGTTTTACAGGT+GGG - chr7_4:26945785-26945804 Msa1147570:intron 20.0%
!!! TTTTTAAATGGCATCTTTAT+AGG + chr7_4:26945876-26945895 None:intergenic 20.0%
!!! CAATTCTCTACTTTTTTAAA+TGG + chr7_4:26945888-26945907 None:intergenic 20.0%
!! ATACCTTGAAACTATATATA+TGG + chr7_4:26946356-26946375 None:intergenic 20.0%
!! CTAATGAAGTAAGATAATTA+CGG - chr7_4:26946566-26946585 Msa1147570:intron 20.0%
!!! AAATCATTGTTTTCTTATCT+AGG - chr7_4:26946891-26946910 Msa1147570:intron 20.0%
!! ATAAGAAACTTTGATACAAA+TGG - chr7_4:26946992-26947011 Msa1147570:CDS 20.0%
!! TAAAAAAAGAATCTGGAAAA+AGG + chr7_4:26947586-26947605 None:intergenic 20.0%
!! AAATAAAGAATCAAAAGTTG+TGG + chr7_4:26947652-26947671 None:intergenic 20.0%
!!! GTATTATTTGTGTCTTATTT+TGG - chr7_4:26947972-26947991 Msa1147570:intron 20.0%
!! TCATAGTTACCAAAAAATAA+AGG + chr7_4:26948104-26948123 None:intergenic 20.0%
!!! TTTTTTGGTAACTATGATAT+TGG - chr7_4:26948107-26948126 Msa1147570:intron 20.0%
!! AAATTAGTCATCACTAAAAT+CGG + chr7_4:26948146-26948165 None:intergenic 20.0%
!!! ATTTTATTGTTTGTTTCATG+TGG + chr7_4:26948353-26948372 None:intergenic 20.0%
!!! AACTACTTTATTTGAAAACA+TGG - chr7_4:26948374-26948393 Msa1147570:intron 20.0%
!! AATTAAACAGTCTTCATATT+TGG - chr7_4:26948422-26948441 Msa1147570:intron 20.0%
!! TAAACATTTATGATACTTTG+TGG - chr7_4:26948566-26948585 Msa1147570:CDS 20.0%
!!! ATAAAAAAGGTGAAAGTGTT+TGG + chr7_4:26941740-26941759 None:intergenic 25.0%
!!! TTGTTGATCATACTTTTTCT+TGG - chr7_4:26942108-26942127 Msa1147570:intron 25.0%
!!! TGAGTCATGATCATTTTTAA+TGG - chr7_4:26942524-26942543 Msa1147570:intron 25.0%
!!! TGATTTTGAATTGTTTCTCA+AGG - chr7_4:26942709-26942728 Msa1147570:intron 25.0%
!!! TATTGGTTCTTTTTGCTTTT+TGG - chr7_4:26942789-26942808 Msa1147570:intron 25.0%
! AAAGTAAAAAAGGTAACTTG+TGG + chr7_4:26942836-26942855 None:intergenic 25.0%
! CAAAGTTATGAAATTAGTGT+TGG - chr7_4:26942923-26942942 Msa1147570:intron 25.0%
! TTGAATGTAACTACATATGT+CGG - chr7_4:26943071-26943090 Msa1147570:intron 25.0%
! TGTCTAATGTAAAGAAAAAG+TGG + chr7_4:26943180-26943199 None:intergenic 25.0%
! AATGTTTCCAAAAAAAATGC+TGG + chr7_4:26943681-26943700 None:intergenic 25.0%
! TTGCAGTAAACTTATTAATG+TGG - chr7_4:26943722-26943741 Msa1147570:intron 25.0%
! TTTACACTGTGTATATGAAT+TGG - chr7_4:26944035-26944054 Msa1147570:intron 25.0%
! ATAAACAGTTACCTTAACAT+CGG + chr7_4:26944614-26944633 None:intergenic 25.0%
!!! CGATAGTTATTTTGAAATTG+AGG + chr7_4:26944697-26944716 None:intergenic 25.0%
! ATCAACATATATGATTCTTG+TGG - chr7_4:26944871-26944890 Msa1147570:intron 25.0%
!! TAATTCAAGTTCTTTGTAAC+AGG - chr7_4:26945176-26945195 Msa1147570:CDS 25.0%
! ATATATCAACAATGTCTTTG+AGG - chr7_4:26945318-26945337 Msa1147570:intron 25.0%
!!! TTGAATTTGAACTGTTTTTG+TGG - chr7_4:26945401-26945420 Msa1147570:CDS 25.0%
! TTCTATCATGCAAAGAATTA+GGG + chr7_4:26945521-26945540 None:intergenic 25.0%
! TTTCTATCATGCAAAGAATT+AGG + chr7_4:26945522-26945541 None:intergenic 25.0%
! TAACATTGTCTAAACCATTA+TGG - chr7_4:26946174-26946193 Msa1147570:intron 25.0%
! TGAAACTATATATATGGCTT+TGG + chr7_4:26946350-26946369 None:intergenic 25.0%
! AAGCCATATATATAGTTTCA+AGG - chr7_4:26946350-26946369 Msa1147570:intron 25.0%
! CTTTACATCAGATTCTTAAT+TGG + chr7_4:26946405-26946424 None:intergenic 25.0%
! CAATTAAGAATCTGATGTAA+AGG - chr7_4:26946403-26946422 Msa1147570:intron 25.0%
! AATGAATAAGATTAAGAGCT+AGG + chr7_4:26946455-26946474 None:intergenic 25.0%
! TCGCAATTCTATATACATAA+AGG + chr7_4:26946805-26946824 None:intergenic 25.0%
! TGTATATAGAATTGCGATAA+AGG - chr7_4:26946808-26946827 Msa1147570:intron 25.0%
!! AGGCTAACAAAATCTTTTTA+TGG - chr7_4:26946911-26946930 Msa1147570:CDS 25.0%
! TGATTGTTGGATATCATTAA+TGG - chr7_4:26947022-26947041 Msa1147570:CDS 25.0%
!!! GCATTTTAGTAAAAAAACCA+TGG - chr7_4:26947088-26947107 Msa1147570:CDS 25.0%
!!! ATCAGATGGAATATTTTTTC+TGG - chr7_4:26947457-26947476 Msa1147570:intron 25.0%
! TCAAAGATTCAACAAGTAAA+AGG + chr7_4:26947555-26947574 None:intergenic 25.0%
! GTACACATAAAAAAAGAATC+TGG + chr7_4:26947593-26947612 None:intergenic 25.0%
!!! GACTTTTCATCAATTTGTTA+TGG + chr7_4:26947903-26947922 None:intergenic 25.0%
! CAAGTTTATAAAAGCTATCA+TGG - chr7_4:26947945-26947964 Msa1147570:intron 25.0%
!!! TTATTTTGGTTGTGATACAT+GGG - chr7_4:26947986-26948005 Msa1147570:intron 25.0%
! ATTTGACTGACCATATTTAT+TGG - chr7_4:26948175-26948194 Msa1147570:intron 25.0%
!! TAGAAAAAGTGTATTTAAGC+CGG + chr7_4:26948208-26948227 None:intergenic 25.0%
!!! ATACACTTTTTCTATTTGCA+AGG - chr7_4:26948214-26948233 Msa1147570:intron 25.0%
!! ATGATACTTTGTGGTTTTTA+TGG - chr7_4:26948575-26948594 Msa1147570:CDS 25.0%
! TAACAGCAAGTATAATGTAT+TGG - chr7_4:26948664-26948683 Msa1147570:five_prime_UTR 25.0%
!!! ATCAAGTGTTGAATTTGATA+TGG + chr7_4:26948742-26948761 None:intergenic 25.0%
! GTCATAGTTCAAAGTTGTTT+TGG + chr7_4:26941660-26941679 None:intergenic 30.0%
TATACATAGACTCATTGCAT+TGG - chr7_4:26941780-26941799 Msa1147570:CDS 30.0%
TTATAGCTATGTCAAGTCAT+TGG - chr7_4:26941875-26941894 Msa1147570:intron 30.0%
TATAGCTATGTCAAGTCATT+GGG - chr7_4:26941876-26941895 Msa1147570:intron 30.0%
GTATTATAGTTTCAGATCCA+TGG - chr7_4:26941899-26941918 Msa1147570:intron 30.0%
TTTCATTCTAATTCAGCTTC+TGG - chr7_4:26942063-26942082 Msa1147570:intron 30.0%
TTCATTCTAATTCAGCTTCT+GGG - chr7_4:26942064-26942083 Msa1147570:intron 30.0%
TTGTTGAATATCCTATTGCT+TGG - chr7_4:26942254-26942273 Msa1147570:intron 30.0%
!! GTTGATTTTCCAAGAAAGAT+TGG - chr7_4:26942470-26942489 Msa1147570:intron 30.0%
ATGTCAAGATTGAAAGTTGT+AGG - chr7_4:26942617-26942636 Msa1147570:intron 30.0%
!!! TCAAAAGTTGGCTTTTTGAA+AGG + chr7_4:26942765-26942784 None:intergenic 30.0%
AACCAATACACTTCAAAAGT+TGG + chr7_4:26942777-26942796 None:intergenic 30.0%
TAGATCAACAAAAGAAGGAA+AGG + chr7_4:26942959-26942978 None:intergenic 30.0%
TGTTGTAGATCAACAAAAGA+AGG + chr7_4:26942964-26942983 None:intergenic 30.0%
TTACATTAGACACAAAGAAG+AGG - chr7_4:26943188-26943207 Msa1147570:intron 30.0%
TACATTAGACACAAAGAAGA+GGG - chr7_4:26943189-26943208 Msa1147570:intron 30.0%
AATCGAAGAGCTGAAAAATA+TGG + chr7_4:26943273-26943292 None:intergenic 30.0%
TTTAATGCCAAACACCATAA+GGG - chr7_4:26943299-26943318 Msa1147570:intron 30.0%
TTTAATTCCCTTATGGTGTT+TGG + chr7_4:26943309-26943328 None:intergenic 30.0%
GTTGCTATAATAATGATGAC+AGG - chr7_4:26943364-26943383 Msa1147570:intron 30.0%
!!! CATTATGCCAGCATTTTTTT+TGG - chr7_4:26943671-26943690 Msa1147570:intron 30.0%
AAAACGATTACTTAACCCTT+GGG - chr7_4:26943782-26943801 Msa1147570:intron 30.0%
! GATTTTCATTTCTTTCCCAA+GGG + chr7_4:26943800-26943819 None:intergenic 30.0%
! TGATTTTCATTTCTTTCCCA+AGG + chr7_4:26943801-26943820 None:intergenic 30.0%
TCAAGACTTAATTGAAGGAA+GGG - chr7_4:26943878-26943897 Msa1147570:intron 30.0%
! AGAAGGGTTATTTCAGAAAA+TGG + chr7_4:26944111-26944130 None:intergenic 30.0%
!!! GTTTTAATTTCAGCGTCATT+TGG - chr7_4:26944176-26944195 Msa1147570:CDS 30.0%
! AAAGTTGAGGAGTTTTCTTT+AGG + chr7_4:26944376-26944395 None:intergenic 30.0%
! AAAGAAAACTCCTCAACTTT+TGG - chr7_4:26944376-26944395 Msa1147570:intron 30.0%
TAAAAGATAACAGCGAAGAA+CGG + chr7_4:26944433-26944452 None:intergenic 30.0%
!!! CATCTCAACAAGATTTTTTC+TGG + chr7_4:26944535-26944554 None:intergenic 30.0%
CAGAAAAAATCTTGTTGAGA+TGG - chr7_4:26944533-26944552 Msa1147570:intron 30.0%
!!! ACTAGTTTTGCTCTTTCAAA+CGG + chr7_4:26944983-26945002 None:intergenic 30.0%
AAATATGTGCAACAAAAGCA+AGG + chr7_4:26945084-26945103 None:intergenic 30.0%
! TTGCACATATTTTCCAAATC+AGG - chr7_4:26945092-26945111 Msa1147570:intron 30.0%
TTCCAAGACTATTAATCCAA+AGG + chr7_4:26945291-26945310 None:intergenic 30.0%
! TGCATGATAGAAAAGTATAG+CGG - chr7_4:26945529-26945548 Msa1147570:CDS 30.0%
ATCGGAAACATAGTCATAAT+TGG - chr7_4:26945562-26945581 Msa1147570:CDS 30.0%
TTAAATGGCATCTTTATAGG+AGG + chr7_4:26945873-26945892 None:intergenic 30.0%
TGTAACCAAGTTGTGAAAAT+TGG - chr7_4:26945906-26945925 Msa1147570:CDS 30.0%
GTAACCAAGTTGTGAAAATT+GGG - chr7_4:26945907-26945926 Msa1147570:CDS 30.0%
! GAAACAACTTAAGTTTTCCT+TGG - chr7_4:26945929-26945948 Msa1147570:CDS 30.0%
! TTTTCCTTGGTAAATATTGC+TGG - chr7_4:26945942-26945961 Msa1147570:CDS 30.0%
ATTTCCAGCAATATTTACCA+AGG + chr7_4:26945949-26945968 None:intergenic 30.0%
ACAATTGATTGTAACCTTGT+CGG + chr7_4:26946084-26946103 None:intergenic 30.0%
GTTAACACCTTATGAAACTA+AGG + chr7_4:26946158-26946177 None:intergenic 30.0%
! TCAAGTTCTTTAGAAGTTGT+AGG + chr7_4:26946248-26946267 None:intergenic 30.0%
TGATTCTGATATTCTGCAAT+GGG - chr7_4:26946296-26946315 Msa1147570:CDS 30.0%
TTAAGAGCTAGGTAAACTAA+TGG + chr7_4:26946444-26946463 None:intergenic 30.0%
CTATATACATAAAGGCTACA+TGG + chr7_4:26946797-26946816 None:intergenic 30.0%
TGTTGTCACTCTATACATAA+AGG + chr7_4:26946871-26946890 None:intergenic 30.0%
AAACTTTGATACAAATGGCA+TGG - chr7_4:26946997-26947016 Msa1147570:CDS 30.0%
TTATCCACTTGTATGTATTC+AGG - chr7_4:26947374-26947393 Msa1147570:intron 30.0%
TATCCACTTGTATGTATTCA+GGG - chr7_4:26947375-26947394 Msa1147570:intron 30.0%
TGTATGTATTCAGGGATTAA+AGG - chr7_4:26947383-26947402 Msa1147570:intron 30.0%
CAGGATAAAAGTTTATCAGA+TGG - chr7_4:26947443-26947462 Msa1147570:intron 30.0%
! TACTTGTTGAATCTTTGACT+TGG - chr7_4:26947557-26947576 Msa1147570:intron 30.0%
AAAGAATCAAAAGTTGTGGA+GGG + chr7_4:26947648-26947667 None:intergenic 30.0%
TAAAGAATCAAAAGTTGTGG+AGG + chr7_4:26947649-26947668 None:intergenic 30.0%
!! AAAGAGCAAGCTGTTTTAAA+TGG + chr7_4:26947830-26947849 None:intergenic 30.0%
!!! CTTATTTTGGTTGTGATACA+TGG - chr7_4:26947985-26948004 Msa1147570:intron 30.0%
!!! TATTGTTTTTTTGAGGGAGA+AGG + chr7_4:26948072-26948091 None:intergenic 30.0%
! AGAAAAAGTGTATTTAAGCC+GGG + chr7_4:26948207-26948226 None:intergenic 30.0%
AATCATGAAATTCTCTCAAG+TGG - chr7_4:26948304-26948323 Msa1147570:intron 30.0%
ATCATGAAATTCTCTCAAGT+GGG - chr7_4:26948305-26948324 Msa1147570:intron 30.0%
! TCTTGCAATACTGATAATGT+AGG + chr7_4:26948486-26948505 None:intergenic 30.0%
ATCAGTATTGCAAGAAAACT+TGG - chr7_4:26948491-26948510 Msa1147570:intron 30.0%
!! TTATACTTGCTGTTAGTGTA+AGG + chr7_4:26948659-26948678 None:intergenic 30.0%
CTCTCATATATATGCATTGT+TGG + chr7_4:26948841-26948860 None:intergenic 30.0%
CAACAATGCATATATATGAG+AGG - chr7_4:26948839-26948858 Msa1147570:five_prime_UTR 30.0%
!! TTTGGAAAGAGTGTTAGAGA+AGG + chr7_4:26941722-26941741 None:intergenic 35.0%
ATAGCTATGTCAAGTCATTG+GGG - chr7_4:26941877-26941896 Msa1147570:intron 35.0%
GAAGTTCAACTTGTGTAAAC+TGG + chr7_4:26941933-26941952 None:intergenic 35.0%
TTTCATTGCAATTCAGCTTC+TGG - chr7_4:26942209-26942228 Msa1147570:intron 35.0%
TTCATTGCAATTCAGCTTCT+GGG - chr7_4:26942210-26942229 Msa1147570:intron 35.0%
TATCTTGCAAACCAAGCAAT+AGG + chr7_4:26942268-26942287 None:intergenic 35.0%
TTCATTGCAATTCAGCTTCT+TGG - chr7_4:26942210-26942229 Msa1147570:intron 35.0%
TATTGCAGTTCATGATCATG+AGG - chr7_4:26942552-26942571 Msa1147570:intron 35.0%
!!! AGCCAACTTTTGAAGTGTAT+TGG - chr7_4:26942772-26942791 Msa1147570:intron 35.0%
GCACTTACACTTCAAATTGA+GGG + chr7_4:26943114-26943133 None:intergenic 35.0%
AGCACTTACACTTCAAATTG+AGG + chr7_4:26943115-26943134 None:intergenic 35.0%
CATGCTACAGAAAAAATGCA+GGG + chr7_4:26943237-26943256 None:intergenic 35.0%
ACATGCTACAGAAAAAATGC+AGG + chr7_4:26943238-26943257 None:intergenic 35.0%
CTTTAATGCCAAACACCATA+AGG - chr7_4:26943298-26943317 Msa1147570:intron 35.0%
!!! ACTTTTGCAAGTTCTAGAAC+AGG - chr7_4:26943404-26943423 Msa1147570:intron 35.0%
CAAAACGATTACTTAACCCT+TGG - chr7_4:26943781-26943800 Msa1147570:intron 35.0%
CTCAAGACTTAATTGAAGGA+AGG - chr7_4:26943877-26943896 Msa1147570:intron 35.0%
!!! CTCAACAAGATTTTTTCTGG+TGG + chr7_4:26944532-26944551 None:intergenic 35.0%
AAATTTCTCCTCCGATGTTA+AGG - chr7_4:26944600-26944619 Msa1147570:CDS 35.0%
!! TGTCGATGGATTAGTGTATT+CGG + chr7_4:26944945-26944964 None:intergenic 35.0%
! TTTTTCACAGCTAATGTCGA+TGG + chr7_4:26944959-26944978 None:intergenic 35.0%
TCTTGAACATGCTGAAAAGA+TGG - chr7_4:26945003-26945022 Msa1147570:intron 35.0%
CTTGAACATGCTGAAAAGAT+GGG - chr7_4:26945004-26945023 Msa1147570:intron 35.0%
ACTGCAAGAGATATAGTTGA+AGG - chr7_4:26945043-26945062 Msa1147570:intron 35.0%
ACAAAAGCAAGGTTCAGATT+TGG + chr7_4:26945073-26945092 None:intergenic 35.0%
CAAGTTCTTTGTAACAGGAA+TGG - chr7_4:26945181-26945200 Msa1147570:CDS 35.0%
TATCATCTAGCAATGAGTCA+AGG + chr7_4:26945237-26945256 None:intergenic 35.0%
GCTCATATTCGCTTACAAAT+GGG - chr7_4:26945423-26945442 Msa1147570:CDS 35.0%
TCACGAGTAAACTTGTAAAC+TGG - chr7_4:26945458-26945477 Msa1147570:CDS 35.0%
ATCTTCCAATTAACAATCCC+AGG + chr7_4:26945840-26945859 None:intergenic 35.0%
! GTTTCCCAATTTTCACAACT+TGG + chr7_4:26945914-26945933 None:intergenic 35.0%
AACTTGAGATTTCACTCTCA+TGG - chr7_4:26946261-26946280 Msa1147570:intron 35.0%
ACTTGAGATTTCACTCTCAT+GGG - chr7_4:26946262-26946281 Msa1147570:intron 35.0%
CTGATTCTGATATTCTGCAA+TGG - chr7_4:26946295-26946314 Msa1147570:CDS 35.0%
AAATGGCATGGTTTGATTGT+TGG - chr7_4:26947009-26947028 Msa1147570:CDS 35.0%
!!! TTGCATTTTGAAGCCCATAT+GGG - chr7_4:26947064-26947083 Msa1147570:CDS 35.0%
TTACTAAAATGCCCCCATAT+GGG + chr7_4:26947080-26947099 None:intergenic 35.0%
TTTACTAAAATGCCCCCATA+TGG + chr7_4:26947081-26947100 None:intergenic 35.0%
! CCAAACCTAGAGTTTTTCTA+GGG - chr7_4:26947111-26947130 Msa1147570:intron 35.0%
GTAAACCCTAGAAAAACTCT+AGG + chr7_4:26947119-26947138 None:intergenic 35.0%
AATCCCTGAATACATACAAG+TGG + chr7_4:26947381-26947400 None:intergenic 35.0%
TCAGTCTGAAAATCATGTGA+TGG + chr7_4:26947615-26947634 None:intergenic 35.0%
! ACAGTTAGAATCTGAAGCAA+AGG + chr7_4:26947874-26947893 None:intergenic 35.0%
! GAAAAAGTGTATTTAAGCCG+GGG + chr7_4:26948206-26948225 None:intergenic 35.0%
!! ACTCTAACCAAAGCTTTAGA+AGG + chr7_4:26948260-26948279 None:intergenic 35.0%
TCATGAAATTCTCTCAAGTG+GGG - chr7_4:26948306-26948325 Msa1147570:intron 35.0%
! TCTTTTCTTCAACAACAGCA+GGG + chr7_4:26948701-26948720 None:intergenic 35.0%
AGAAAAGACAAGTTCAGATG+TGG - chr7_4:26948713-26948732 Msa1147570:five_prime_UTR 35.0%
TGAACTATGACAGCTCTTTC+CGG - chr7_4:26941669-26941688 Msa1147570:three_prime_UTR 40.0%
! TGGAACAAGGACACCATTTT+GGG + chr7_4:26941696-26941715 None:intergenic 40.0%
! ATGGAACAAGGACACCATTT+TGG + chr7_4:26941697-26941716 None:intergenic 40.0%
TTAGAGAAGGAGATGGAACA+AGG + chr7_4:26941709-26941728 None:intergenic 40.0%
!! AAGAGTGTTAGAGAAGGAGA+TGG + chr7_4:26941716-26941735 None:intergenic 40.0%
!!! GTAAACTGGTTTTGAAGCCA+TGG + chr7_4:26941919-26941938 None:intergenic 40.0%
TTGAAGTGTAAGTGCTTCGT+AGG - chr7_4:26943119-26943138 Msa1147570:intron 40.0%
AAACTCATCAGCATTCCTCA+AGG - chr7_4:26943442-26943461 Msa1147570:intron 40.0%
TGTGTGAAGCAATGTTGTAG+TGG + chr7_4:26943471-26943490 None:intergenic 40.0%
!! CAAGAGGAAGGTATTTCTTG+AGG + chr7_4:26943559-26943578 None:intergenic 40.0%
CTCTTCGAAATCGCAAAAGA+CGG - chr7_4:26943596-26943615 Msa1147570:intron 40.0%
CAAAAGACGGTGTTCTTCTT+TGG - chr7_4:26943609-26943628 Msa1147570:intron 40.0%
CAATTGCTTTAGCAGAGTTG+AGG + chr7_4:26943833-26943852 None:intergenic 40.0%
CTCAACTCTGCTAAAGCAAT+TGG - chr7_4:26943831-26943850 Msa1147570:intron 40.0%
! TTGAGTGCCAATGTTGACTA+CGG + chr7_4:26943862-26943881 None:intergenic 40.0%
GGCACTCAAGACTTAATTGA+AGG - chr7_4:26943873-26943892 Msa1147570:intron 40.0%
AACAGTTACCTTAACATCGG+AGG + chr7_4:26944611-26944630 None:intergenic 40.0%
TATGATTCTTGTGGCGTTGT+AGG - chr7_4:26944880-26944899 Msa1147570:intron 40.0%
CGGATGCAAGAACATTTAGA+AGG + chr7_4:26944925-26944944 None:intergenic 40.0%
! AAGAGAGAGTTTTTCGCCTT+TGG - chr7_4:26945272-26945291 Msa1147570:CDS 40.0%
CGCCTTTGGATTAATAGTCT+TGG - chr7_4:26945286-26945305 Msa1147570:CDS 40.0%
! ACAATGTCTTTGAGGATGTC+CGG - chr7_4:26945326-26945345 Msa1147570:intron 40.0%
TTTCGATATTTCACCCGTTC+CGG + chr7_4:26945348-26945367 None:intergenic 40.0%
GGCTCATATTCGCTTACAAA+TGG - chr7_4:26945422-26945441 Msa1147570:CDS 40.0%
! TATAGCGGCTACTTTGCTAT+CGG - chr7_4:26945544-26945563 Msa1147570:CDS 40.0%
CAATGATCGATCACGATGTT+TGG + chr7_4:26945588-26945607 None:intergenic 40.0%
!! GCTTTTAGAGACTCTTGACA+AGG - chr7_4:26945809-26945828 Msa1147570:intron 40.0%
TGTCACCTGGGATTGTTAAT+TGG - chr7_4:26945832-26945851 Msa1147570:intron 40.0%
CTTCACACTAAAGTCGTGTA+TGG - chr7_4:26946032-26946051 Msa1147570:intron 40.0%
TGTCTGACACAAACACATGT+CGG + chr7_4:26946061-26946080 None:intergenic 40.0%
GTTTGGGCCTTAGTTTCATA+AGG - chr7_4:26946148-26946167 Msa1147570:intron 40.0%
AACACCAAAGTGAGAAACTC+AGG - chr7_4:26946321-26946340 Msa1147570:intron 40.0%
CATATGGGCTTCAAAATGCA+AGG + chr7_4:26947065-26947084 None:intergenic 40.0%
!!! CTTGCATTTTGAAGCCCATA+TGG - chr7_4:26947063-26947082 Msa1147570:CDS 40.0%
!!! TGCATTTTGAAGCCCATATG+GGG - chr7_4:26947065-26947084 Msa1147570:CDS 40.0%
AAAAACTCTAGGTTTGGCCA+TGG + chr7_4:26947108-26947127 None:intergenic 40.0%
! GCCAAACCTAGAGTTTTTCT+AGG - chr7_4:26947110-26947129 Msa1147570:intron 40.0%
CCCTAGAAAAACTCTAGGTT+TGG + chr7_4:26947114-26947133 None:intergenic 40.0%
! TGATCGATTGTAGTTTGTCG+TGG + chr7_4:26947194-26947213 None:intergenic 40.0%
CTCTAGGTTGTACAGAACTA+AGG + chr7_4:26947487-26947506 None:intergenic 40.0%
TACAACCTAGAGCTGTGAAT+TGG - chr7_4:26947495-26947514 Msa1147570:intron 40.0%
ACAACCTAGAGCTGTGAATT+GGG - chr7_4:26947496-26947515 Msa1147570:intron 40.0%
! AATTGGGGTCTTGTGACAAA+AGG - chr7_4:26947512-26947531 Msa1147570:intron 40.0%
CTTGTGACAAAAGGAGTAAC+TGG - chr7_4:26947521-26947540 Msa1147570:intron 40.0%
! CATATTTATTGGTGTCTCCC+CGG - chr7_4:26948186-26948205 Msa1147570:intron 40.0%
! CTTTAGAAGGAACAAGGTCT+CGG + chr7_4:26948247-26948266 None:intergenic 40.0%
!! CCAAAGCTTTAGAAGGAACA+AGG + chr7_4:26948253-26948272 None:intergenic 40.0%
!! CCTTGTTCCTTCTAAAGCTT+TGG - chr7_4:26948250-26948269 Msa1147570:intron 40.0%
! GTCTTTTCTTCAACAACAGC+AGG + chr7_4:26948702-26948721 None:intergenic 40.0%
ATGATCATGAGGAGAGAGAG+TGG - chr7_4:26942563-26942582 Msa1147570:intron 45.0%
TGATCATGAGGAGAGAGAGT+GGG - chr7_4:26942564-26942583 Msa1147570:intron 45.0%
GAGAGTGGGAAGCTTACAAT+TGG - chr7_4:26942578-26942597 Msa1147570:intron 45.0%
ATGTTGTAGTGGCAACCTTG+AGG + chr7_4:26943460-26943479 None:intergenic 45.0%
CACAATAAGCGAATCCGAGA+AGG - chr7_4:26943487-26943506 Msa1147570:intron 45.0%
TGTAACATACGACGCCTTCT+CGG + chr7_4:26943504-26943523 None:intergenic 45.0%
TGGTTGAAGGATCAAGAGGA+AGG + chr7_4:26943571-26943590 None:intergenic 45.0%
! TCGTTGGTTGAAGGATCAAG+AGG + chr7_4:26943575-26943594 None:intergenic 45.0%
! TCGAAGAGATCGTTGGTTGA+AGG + chr7_4:26943584-26943603 None:intergenic 45.0%
TGCGATTTCGAAGAGATCGT+TGG + chr7_4:26943591-26943610 None:intergenic 45.0%
GGATGTACCGTAGTCAACAT+TGG - chr7_4:26943852-26943871 Msa1147570:intron 45.0%
ATGTGTGACGAGGAATCGAA+AGG + chr7_4:26944075-26944094 None:intergenic 45.0%
TCCTCGTCACACATGTAACT+AGG - chr7_4:26944081-26944100 Msa1147570:intron 45.0%
TCCTAGTTACATGTGTGACG+AGG + chr7_4:26944085-26944104 None:intergenic 45.0%
!! TTTCAGCGTCATTTGGTGCT+TGG - chr7_4:26944183-26944202 Msa1147570:CDS 45.0%
!!! AACTCCTCAACTTTTGGAGC+TGG - chr7_4:26944382-26944401 Msa1147570:intron 45.0%
!!! AACTTTTGGAGCTGGTTGGT+TGG - chr7_4:26944390-26944409 Msa1147570:intron 45.0%
!!! ACTTTTGGAGCTGGTTGGTT+GGG - chr7_4:26944391-26944410 Msa1147570:intron 45.0%
GCTGGAAATGACATTGTGCA+AGG - chr7_4:26945960-26945979 Msa1147570:CDS 45.0%
GACGTGTCAATGTCGTGTTT+GGG - chr7_4:26946132-26946151 Msa1147570:CDS 45.0%
GAGATTTCACTCTCATGGGA+AGG - chr7_4:26946266-26946285 Msa1147570:intron 45.0%
GCTTCCTGAGTTTCTCACTT+TGG + chr7_4:26946328-26946347 None:intergenic 45.0%
!!! GCATTTTGAAGCCCATATGG+GGG - chr7_4:26947066-26947085 Msa1147570:CDS 45.0%
CAACCTAGAGCTGTGAATTG+GGG - chr7_4:26947497-26947516 Msa1147570:intron 45.0%
CGGGGAGACACCAATAAATA+TGG + chr7_4:26948188-26948207 None:intergenic 45.0%
ACTACCTCAGTGATGTCTTC+AGG + chr7_4:26948536-26948555 None:intergenic 45.0%
!!! AAATCTAATTTTTTTTTTTT+TGG + chr7_4:26942036-26942055 None:intergenic 5.0%
!!! AAATCTAATTTTATTTTTTT+TGG + chr7_4:26942182-26942201 None:intergenic 5.0%
AGCTCTTTCCGGTCCCAAAA+TGG - chr7_4:26941680-26941699 Msa1147570:three_prime_UTR 50.0%
!!! CAAGGACACCATTTTGGGAC+CGG + chr7_4:26941691-26941710 None:intergenic 50.0%
!! ACTGACTCGAAGCACTGACT+CGG - chr7_4:26942991-26943010 Msa1147570:CDS 50.0%
GCGCGTTCATCGATAGTTGT+CGG + chr7_4:26943753-26943772 None:intergenic 50.0%
CCAACCAGCTCCAAAAGTTG+AGG + chr7_4:26944389-26944408 None:intergenic 50.0%
!!! CCTCAACTTTTGGAGCTGGT+TGG - chr7_4:26944386-26944405 Msa1147570:intron 50.0%
! GCTGGTTGGTTGGGATAGTA+AGG - chr7_4:26944400-26944419 Msa1147570:intron 50.0%
! GTCTTTGAGGATGTCCGGAA+CGG - chr7_4:26945331-26945350 Msa1147570:intron 50.0%
! TCTTTGAGGATGTCCGGAAC+GGG - chr7_4:26945332-26945351 Msa1147570:intron 50.0%
! ACTCTTGACAAGGTGTCACC+TGG - chr7_4:26945819-26945838 Msa1147570:intron 50.0%
! CTCTTGACAAGGTGTCACCT+GGG - chr7_4:26945820-26945839 Msa1147570:intron 50.0%
GTTTGTGTCAGACACCGACA+AGG - chr7_4:26946067-26946086 Msa1147570:intron 50.0%
CGACGTGTCAATGTCGTGTT+TGG - chr7_4:26946131-26946150 Msa1147570:CDS 50.0%
AGACCCCAATTCACAGCTCT+AGG + chr7_4:26947503-26947522 None:intergenic 50.0%
GCTTCCTGAAGACATCACTG+AGG - chr7_4:26948529-26948548 Msa1147570:intron 50.0%
TCATTGACCCGTGCGAAGCA+CGG + chr7_4:26946705-26946724 None:intergenic 55.0%
CATTGACCCGTGCGAAGCAC+GGG + chr7_4:26946704-26946723 None:intergenic 60.0%
TCGCACTCCCGTGCTTCGCA+CGG - chr7_4:26946694-26946713 Msa1147570:intron 65.0%
CGCACTCCCGTGCTTCGCAC+GGG - chr7_4:26946695-26946714 Msa1147570:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 26941635 26948879 26941635 ID=Msa1147570;Name=Msa1147570
chr7_4 mRNA 26941635 26948879 26941635 ID=Msa1147570-mRNA-1;Parent=Msa1147570;Name=Msa1147570-mRNA-1;_AED=0.10;_eAED=0.10;_QI=248|0.83|0.76|1|0.91|0.92|13|79|565
chr7_4 exon 26941635 26941875 26941635 ID=Msa1147570-mRNA-1:exon:6605;Parent=Msa1147570-mRNA-1
chr7_4 exon 26941964 26942055 26941964 ID=Msa1147570-mRNA-1:exon:6604;Parent=Msa1147570-mRNA-1
chr7_4 exon 26942972 26943068 26942972 ID=Msa1147570-mRNA-1:exon:6603;Parent=Msa1147570-mRNA-1
chr7_4 exon 26944143 26944253 26944143 ID=Msa1147570-mRNA-1:exon:6602;Parent=Msa1147570-mRNA-1
chr7_4 exon 26944564 26944711 26944564 ID=Msa1147570-mRNA-1:exon:6601;Parent=Msa1147570-mRNA-1
chr7_4 exon 26945161 26945316 26945161 ID=Msa1147570-mRNA-1:exon:6600;Parent=Msa1147570-mRNA-1
chr7_4 exon 26945401 26945612 26945401 ID=Msa1147570-mRNA-1:exon:6599;Parent=Msa1147570-mRNA-1
chr7_4 exon 26945893 26946009 26945893 ID=Msa1147570-mRNA-1:exon:6598;Parent=Msa1147570-mRNA-1
chr7_4 exon 26946093 26946164 26946093 ID=Msa1147570-mRNA-1:exon:6597;Parent=Msa1147570-mRNA-1
chr7_4 exon 26946287 26946325 26946287 ID=Msa1147570-mRNA-1:exon:6596;Parent=Msa1147570-mRNA-1
chr7_4 exon 26946895 26947128 26946895 ID=Msa1147570-mRNA-1:exon:6595;Parent=Msa1147570-mRNA-1
chr7_4 exon 26947784 26947954 26947784 ID=Msa1147570-mRNA-1:exon:6594;Parent=Msa1147570-mRNA-1
chr7_4 exon 26948545 26948879 26948545 ID=Msa1147570-mRNA-1:exon:6593;Parent=Msa1147570-mRNA-1
chr7_4 five_prime_UTR 26948632 26948879 26948632 ID=Msa1147570-mRNA-1:five_prime_utr;Parent=Msa1147570-mRNA-1
chr7_4 CDS 26948545 26948631 26948545 ID=Msa1147570-mRNA-1:cds;Parent=Msa1147570-mRNA-1
chr7_4 CDS 26947784 26947954 26947784 ID=Msa1147570-mRNA-1:cds;Parent=Msa1147570-mRNA-1
chr7_4 CDS 26946895 26947128 26946895 ID=Msa1147570-mRNA-1:cds;Parent=Msa1147570-mRNA-1
chr7_4 CDS 26946287 26946325 26946287 ID=Msa1147570-mRNA-1:cds;Parent=Msa1147570-mRNA-1
chr7_4 CDS 26946093 26946164 26946093 ID=Msa1147570-mRNA-1:cds;Parent=Msa1147570-mRNA-1
chr7_4 CDS 26945893 26946009 26945893 ID=Msa1147570-mRNA-1:cds;Parent=Msa1147570-mRNA-1
chr7_4 CDS 26945401 26945612 26945401 ID=Msa1147570-mRNA-1:cds;Parent=Msa1147570-mRNA-1
chr7_4 CDS 26945161 26945316 26945161 ID=Msa1147570-mRNA-1:cds;Parent=Msa1147570-mRNA-1
chr7_4 CDS 26944564 26944711 26944564 ID=Msa1147570-mRNA-1:cds;Parent=Msa1147570-mRNA-1
chr7_4 CDS 26944143 26944253 26944143 ID=Msa1147570-mRNA-1:cds;Parent=Msa1147570-mRNA-1
chr7_4 CDS 26942972 26943068 26942972 ID=Msa1147570-mRNA-1:cds;Parent=Msa1147570-mRNA-1
chr7_4 CDS 26941964 26942055 26941964 ID=Msa1147570-mRNA-1:cds;Parent=Msa1147570-mRNA-1
chr7_4 CDS 26941714 26941875 26941714 ID=Msa1147570-mRNA-1:cds;Parent=Msa1147570-mRNA-1
chr7_4 three_prime_UTR 26941635 26941713 26941635 ID=Msa1147570-mRNA-1:three_prime_utr;Parent=Msa1147570-mRNA-1
Gene Sequence

>Msa1147570

ATGTCAAGTCATTGGGGTATTATAGTTTCAGATCCATGGCTTCAAAACCAGTTTACACAAGTTGAACTTCGCAGCTTAAAATCACAATTCATGATCATGAGGAGAGAGAGTGGGAAGCTTACAATTGGAGACTTGTCTTCGAAGATGTCAAGATTGAAAGTTGTAGGAGAAAATCTTAGCGAAGAAGAGAGAGATTCTTATATCAATGATTTGTATACGAAATCAGATGAAGATGTTGATTTTGAATTGTTTCTCAAGGTTTACTTGAAACTGCAAACTTTTGCAAGTTCTAGAACAGGAAGCAATAATGCAAAAAACTCATCAGCATTCCTCAAGGTTGCCACTACAACATTGCTTCACACAATAAGCGAATCCGAGAAGGCGTCGTATGTTACACATATAAATAACTATCTTGCAGAAGATGAATTCCTCAAGAAATACCTTCCTCTTGATCCTTCAACCAACGATCTCTTCGAAATCGCAAAAGACGGTCGTCATTTGGTGCTTGGTTTGATTTCACAGATTATTAAGATACAATTATTGGCGAATCTGAACCTAAAGAAAACTCCTCAACTTTTGGAGCTGGTTGGTTGGGATAGTAAGGATATGGAAGAGTTGATGAGTCTACCACCAGAAAAAATCTTGTTGAGATGGATGAATTTCCATTTGAAGAAAACAGAATATAAGAAGATTGTCGCAAATTTCTCCTCCGATGTTAAGGATGCAGAAGCTTACGCACACCTTCTAAATGTTCTTGCATCCGAATACACTAATCCATCGACATTAGCTGTGAAAAATCCGTTTGAAAGAGCAAAACTAGTTCTTGAACATGCTGAAAAGATGGGTTGCAAGAGATACTTAACTGCAAGAGATATAGTTGAAGGTTCACCAAATCTGAACCTTGCTTTTGTTGCACATATTTTCCAAATCAGGAATGGACTTTCAACTCTAGCAAAACAAAGTTCTCTCCTTGACTCATTGCTAGATGATACTCAAGACTCAAGAGAAGAGAGAGTTTTTCGCCTTTGGATTAATAGTCTTGGAAATTCAACATATATCAACAATGTCTTTGAGGATGTCCGGAACGGGTGGGTGCTTTTAGAGACTCTTGACAAGGTGTCACCTGGGATTGTTAATTGGAAGATTGCAAACAAGCCTCCTATAAAGATGCCATTTAAAAAAGTAGAGAATTGTAACCAAGTTGTGAAAATTGGGAAACAACTTAAGTTTTCCTTGAACTTGAGATTTCACTCTCATGGGAAGGAAATAACTGATTCTGATATTCTGCAATGGGCAAACACCAAAGTGAGAAACTCAGGAAGCCAAAGCCATATATATAGTTTCAAGGATAAAAGTTTATCAGATGGAATATTTTTTCTGGAGCTCCTTAGTTCTGTACAACCTAGAGCTGTGAATTGGGGTCTTGTGACAAAAGGAGTAACTGATCAAGAGAAAATGATGAATGCTACCTACATTATCAGTATTGCAAGAAAACTTGGTTGCTCAATATTCTTGCTTCCTGAAGACATCACTGAGGTAAATCAGAAGATGATCCTTACACTAACAGCAAGTATAATGTATTGGTTCTTAAAACACCCTGCTGTTGTTGAAGAAAAGACAAGTTCAGATGTGGAGACCATATCAAATTCAACACTTGATGATTCTGCTTCTGATTTTTCAGCAGAAGAGAACATGTAA

Protein sequence

>Msa1147570

MSSHWGIIVSDPWLQNQFTQVELRSLKSQFMIMRRESGKLTIGDLSSKMSRLKVVGENLSEEERDSYINDLYTKSDEDVDFELFLKVYLKLQTFASSRTGSNNAKNSSAFLKVATTTLLHTISESEKASYVTHINNYLAEDEFLKKYLPLDPSTNDLFEIAKDGRHLVLGLISQIIKIQLLANLNLKKTPQLLELVGWDSKDMEELMSLPPEKILLRWMNFHLKKTEYKKIVANFSSDVKDAEAYAHLLNVLASEYTNPSTLAVKNPFERAKLVLEHAEKMGCKRYLTARDIVEGSPNLNLAFVAHIFQIRNGLSTLAKQSSLLDSLLDDTQDSREERVFRLWINSLGNSTYINNVFEDVRNGWVLLETLDKVSPGIVNWKIANKPPIKMPFKKVENCNQVVKIGKQLKFSLNLRFHSHGKEITDSDILQWANTKVRNSGSQSHIYSFKDKSLSDGIFFLELLSSVQPRAVNWGLVTKGVTDQEKMMNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMYWFLKHPAVVEEKTSSDVETISNSTLDDSASDFSAEENM*