AlfalfaGEDB | Msa1105290

M. sativa cultivar zhongmu-4 / Msa1105290

KEGG: -
GO: -
PFAM: PF12452.11

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1105290	XP_003622954.1	97.476	515	13	0	1	515	1	515	0.0	1042

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1105290	G7L1B6	97.476	515	13	0	1	515	1	515	0.0	1042

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa1105290	0.831277	1.828362e-55	-8.615850e-47
Msa0000780	Msa1105290	0.837917	3.916923e-57	-8.615850e-47
Msa0001460	Msa1105290	0.865587	5.301792e-65	-8.615850e-47
Msa0001950	Msa1105290	0.832715	8.068751e-56	-8.615850e-47
Msa0003470	Msa1105290	0.835964	1.234463e-56	-8.615850e-47
Msa0004350	Msa1105290	0.815165	1.063306e-51	-8.615850e-47
Msa0008850	Msa1105290	0.817845	2.669000e-52	-8.615850e-47
Msa0010460	Msa1105290	-0.801995	6.920096e-49	-8.615850e-47
Msa0012460	Msa1105290	0.869205	3.686749e-66	-8.615850e-47
Msa0015370	Msa1105290	0.824068	9.862210e-54	-8.615850e-47

Showing 1 to 10 of 1,233 entries

Previous1 2 3 4 5…124Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1105290	MtrunA17_Chr7g0237421	97.476	515	13	0	1	515	1	515	0.0	1042

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1105290	AT5G48830.1	43.200	500	271	6	23	515	18	511	1.06e-133	397
Msa1105290	AT5G48830.2	42.604	507	270	8	23	515	18	517	5.48e-129	385

Showing 1 to 2 of 2 entries

Previous1Next

Find 112 sgRNAs with CRISPR-Local

Find 778 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAACTGATTAACAAC+TGG	0.461741	7_3:+43724401	None:intergenic
AAAATAGCATTGCTTTCGGT+TGG	0.463344	7_3:-43714656	Msa1105290:three_prime_UTR
AAACTGACAAACAAAGTTGG+TGG	0.594439	7_3:-43716007	Msa1105290:CDS
AAAGTTGTGACATAAATGAG+GGG	0.686374	7_3:+43714700	None:intergenic
AAATTCAAGCCGAGTGTATT+TGG	0.164191	7_3:-43724530	Msa1105290:CDS
AAATTGGCTTGATCTCAATA+TGG	0.390813	7_3:+43714586	None:intergenic
AACTGTTCTAACAATCGGCA+TGG	0.578091	7_3:+43714861	None:intergenic
AAGGAATTAAGAGCCCTTAC+AGG	0.396255	7_3:-43715894	Msa1105290:CDS
AAGTAAAACAAATAGCTTGG+AGG	0.590770	7_3:-43721223	Msa1105290:CDS
AAGTATATTGCTCACTTATA+TGG	0.317130	7_3:-43724372	Msa1105290:CDS

Showing 1 to 10 of 112 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GAGAAAAAGGATGAGAAATT+AGG	+	chr7_3:43714567-43714586	None:intergenic	30.0%
CTCTTCAATTGTCATAAATG+CGG	-	chr7_3:43715819-43715838	Msa1105290:intron	30.0%
GTTCGATGATATTAAACATG+AGG	+	chr7_3:43715874-43715893	None:intergenic	30.0%
TGGTGCAAAACTTAAATATG+AGG	-	chr7_3:43716382-43716401	Msa1105290:intron	30.0%
GGTGCAAAACTTAAATATGA+GGG	-	chr7_3:43716383-43716402	Msa1105290:intron	30.0%
GTGCAAAACTTAAATATGAG+GGG	-	chr7_3:43716384-43716403	Msa1105290:intron	30.0%
AGAGAAAAAAAGATTGAGAG+TGG	-	chr7_3:43716655-43716674	Msa1105290:intron	30.0%
ACAACACAAACATGAAATCT+TGG	+	chr7_3:43716850-43716869	None:intergenic	30.0%
TTGTTAAATAGCTGTCATAG+CGG	-	chr7_3:43716866-43716885	Msa1105290:intron	30.0%
ATTATAACACAGTTGCATAG+TGG	-	chr7_3:43716985-43717004	Msa1105290:intron	30.0%

Showing 1 to 10 of 778 entries

Previous1 2 3 4 5…78Next

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	43714444	43727422	43714444	ID=Msa1105290;Name=Msa1105290
chr7_3	mRNA	43714444	43727422	43714444	ID=Msa1105290-mRNA-1;Parent=Msa1105290;Name=Msa1105290-mRNA-1;_AED=0.02;_eAED=0.02;_QI=169\|1\|1\|1\|0.87\|0.77\|9\|312\|515
chr7_3	exon	43714444	43714924	43714444	ID=Msa1105290-mRNA-1:exon:8996;Parent=Msa1105290-mRNA-1
chr7_3	exon	43715891	43716144	43715891	ID=Msa1105290-mRNA-1:exon:8995;Parent=Msa1105290-mRNA-1
chr7_3	exon	43721173	43721377	43721173	ID=Msa1105290-mRNA-1:exon:8994;Parent=Msa1105290-mRNA-1
chr7_3	exon	43722050	43722174	43722050	ID=Msa1105290-mRNA-1:exon:8993;Parent=Msa1105290-mRNA-1
chr7_3	exon	43723335	43723481	43723335	ID=Msa1105290-mRNA-1:exon:8992;Parent=Msa1105290-mRNA-1
chr7_3	exon	43723976	43724186	43723976	ID=Msa1105290-mRNA-1:exon:8991;Parent=Msa1105290-mRNA-1
chr7_3	exon	43724278	43724601	43724278	ID=Msa1105290-mRNA-1:exon:8990;Parent=Msa1105290-mRNA-1
chr7_3	exon	43727023	43727192	43727023	ID=Msa1105290-mRNA-1:exon:8989;Parent=Msa1105290-mRNA-1
chr7_3	exon	43727311	43727422	43727311	ID=Msa1105290-mRNA-1:exon:8988;Parent=Msa1105290-mRNA-1
chr7_3	five_prime_UTR	43727311	43727422	43727311	ID=Msa1105290-mRNA-1:five_prime_utr;Parent=Msa1105290-mRNA-1
chr7_3	five_prime_UTR	43727136	43727192	43727136	ID=Msa1105290-mRNA-1:five_prime_utr;Parent=Msa1105290-mRNA-1
chr7_3	CDS	43727023	43727135	43727023	ID=Msa1105290-mRNA-1:cds;Parent=Msa1105290-mRNA-1
chr7_3	CDS	43724278	43724601	43724278	ID=Msa1105290-mRNA-1:cds;Parent=Msa1105290-mRNA-1
chr7_3	CDS	43723976	43724186	43723976	ID=Msa1105290-mRNA-1:cds;Parent=Msa1105290-mRNA-1
chr7_3	CDS	43723335	43723481	43723335	ID=Msa1105290-mRNA-1:cds;Parent=Msa1105290-mRNA-1
chr7_3	CDS	43722050	43722174	43722050	ID=Msa1105290-mRNA-1:cds;Parent=Msa1105290-mRNA-1
chr7_3	CDS	43721173	43721377	43721173	ID=Msa1105290-mRNA-1:cds;Parent=Msa1105290-mRNA-1
chr7_3	CDS	43715891	43716144	43715891	ID=Msa1105290-mRNA-1:cds;Parent=Msa1105290-mRNA-1
chr7_3	CDS	43714756	43714924	43714756	ID=Msa1105290-mRNA-1:cds;Parent=Msa1105290-mRNA-1
chr7_3	three_prime_UTR	43714444	43714755	43714444	ID=Msa1105290-mRNA-1:three_prime_utr;Parent=Msa1105290-mRNA-1

Gene Sequence

>Msa1105290

ATGGCGGAATGTGTAACTTCCCCATTCTGTGTTAAGCTGCATATGCAGCACAAAAGGCCTTTTACACATTCACCCTTCCTACATCAGACTACGAATTTCAAGACTGCTCCAAGAAAGTATTTCAGAAATGAATGTGAATTTTTTCACTTCCTTACACAGAAAAAATTCAAGCCGAGTGTATTTGGGGCTGCAGATTTAAAAATTACTCACCGTCTTCGGGCATTCCCTTTAAATTGCATTGGCATAGGAGCTTTGGTTGACTCTGATGGTGGAACAGCATCTAATTTGGTGCCAGTTGTTAATCAGTTTCTTTTGATGGGAAGTATATTGCTCACTTATATGGCTGGAGTAATTCCTGTTGACAAATCTTATACCCGTGATCAAAAGAACAATTCTGTAAAAAATGCATTACGTGACAGCTCAGACATTTCTGGTAGTGCGGTGCAGCAAAAGGATCAAGTTGAGTCAAATTATGTATTAGATGTGGTGAGAGAAAAACTTTTGAATTCTCTAAATGCATTAGAGAAAGAGGCTTATGCGGGGGACATCATCCTTCAATCTGCAAAAAGACCCTTGAGTTTAAAAGCTGTTGCCGAGGGTCCAAAGTTAAGGTTACTTTGGGCTGCTTTTCTGCAAGTTGAGGAAGAGGTTAATAATATGTCAAGCGTTTCGAGTTCTGTTGGTATGGATGATCCAGTCAAAGTTTTTTCTGAAGTTATTCAAAGATCATGTCATTCTATCTGTGCTACATGGCTGGAAAAGGAGTTTTTCCTTGTAAAAGGCAACACTCACCAGGAATTTGTTTCTATGATGCTTGAAAAAGTGAAAGGGGATAATGTTATTGTACAGAACATTACAAGGTCTGGCAAGAAAGATCTGTATTCAGAATTACTTTGGTATCTTACTTTTGGTTTGGTCAGGGATGATTGCTGTTATGATTCCCGTATATTTGCTACCCATGGTGTTTCCATTTTAGAAGATTTAGTTATAGCTCTGGCAGATGGGGTTGCAAGCCTCTATCTGGAGTTTATTTCTGTTGATAGTGATGTGTCAAGTAAAACAAATAGCTTGGAGGTGTCATTCTGTGCTTTATCCACCAGAGAACTCCAAAAATTACGTAATGAGGTGGCTTTGAACCAGTGGTTGTACCACAACATGGACACAGTTGTGTCAATGTATGAGGATCGCTTTGACTTGTGTACACTTGAGAGCCAACCCATTGATTTACCGGACAGCAGTCAAACTGACAAACAAAGTTGGTGGAAGAATCTTACCCAGCAACATTCAAAAACCATGTCACATGAGTTATATTGTATTGCGATAAACCATTTCTCAATGCCCATAAAACGGACAAAGGAATTAAGAGCCCTTACAGGATGGAGGTATTACTTCAGCCTTCTTCTTGAGCTGTCTGACATCACCATGCCGATTGTTAGAACAGTTATTAATAAAGCAAGTGAAGCTATCTCATTCTTTTTGGTTAGCTTGATTGGCAGGTCTTTAGGACTCATTTATACAGGCATTAGGCAGTCCCTCAAATGGAAGTGA

Protein sequence

>Msa1105290

MAECVTSPFCVKLHMQHKRPFTHSPFLHQTTNFKTAPRKYFRNECEFFHFLTQKKFKPSVFGAADLKITHRLRAFPLNCIGIGALVDSDGGTASNLVPVVNQFLLMGSILLTYMAGVIPVDKSYTRDQKNNSVKNALRDSSDISGSAVQQKDQVESNYVLDVVREKLLNSLNALEKEAYAGDIILQSAKRPLSLKAVAEGPKLRLLWAAFLQVEEEVNNMSSVSSSVGMDDPVKVFSEVIQRSCHSICATWLEKEFFLVKGNTHQEFVSMMLEKVKGDNVIVQNITRSGKKDLYSELLWYLTFGLVRDDCCYDSRIFATHGVSILEDLVIALADGVASLYLEFISVDSDVSSKTNSLEVSFCALSTRELQKLRNEVALNQWLYHNMDTVVSMYEDRFDLCTLESQPIDLPDSSQTDKQSWWKNLTQQHSKTMSHELYCIAINHFSMPIKRTKELRALTGWRYYFSLLLELSDITMPIVRTVINKASEAISFFLVSLIGRSLGLIYTGIRQSLKWK*