AlfalfaGEDB | Msa1262750

M. sativa cultivar zhongmu-4 / Msa1262750

KEGG: -
GO: GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
PFAM: PF00481.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1262750	XP_003609537.1	95.489	399	18	0	1	399	1	399	0.0	795

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1262750	sp\|Q7XJ53\|P2C35_ARATH	68.588	347	107	1	1	345	1	347	3.35e-173	490

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1262750	G7JHV5	95.489	399	18	0	1	399	1	399	0.0	795

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006110	Msa1262750	0.813702	2.238754e-51	-8.615850e-47
Msa0056450	Msa1262750	0.801522	8.653315e-49	-8.615850e-47
Msa0065680	Msa1262750	-0.815531	8.813783e-52	-8.615850e-47
Msa0076670	Msa1262750	0.847424	1.166437e-59	-8.615850e-47
Msa0078610	Msa1262750	0.808589	2.875549e-50	-8.615850e-47
Msa0100090	Msa1262750	0.811076	8.387241e-51	-8.615850e-47
Msa0105070	Msa1262750	0.815766	7.813527e-52	-8.615850e-47
Msa0132990	Msa1262750	0.807261	5.509513e-50	-8.615850e-47
Msa0140500	Msa1262750	-0.804908	1.723733e-49	-8.615850e-47
Msa0171250	Msa1262750	0.822139	2.778512e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1262750	MtrunA17_Chr4g0066371	95.489	399	18	0	1	399	1	399	0.0	795
Msa1262750	MtrunA17_Chr2g0286951	69.231	403	118	4	1	399	1	401	0.0	553
Msa1262750	MtrunA17_Chr6g0486661	60.299	335	127	3	12	343	53	384	5.09e-135	412
Msa1262750	MtrunA17_Chr4g0004971	28.421	285	159	6	68	325	60	326	6.18e-31	121
Msa1262750	MtrunA17_Chr7g0243571	27.707	314	163	6	46	323	60	345	7.97e-31	122
Msa1262750	MtrunA17_Chr7g0221691	30.976	297	143	6	68	322	111	387	2.10e-30	121
Msa1262750	MtrunA17_Chr1g0192421	29.032	279	157	6	68	323	71	331	1.31e-29	117
Msa1262750	MtrunA17_Chr7g0249421	26.786	336	175	7	68	350	78	395	7.17e-29	117
Msa1262750	MtrunA17_Chr3g0136711	30.547	311	167	11	44	350	28	293	7.95e-29	114
Msa1262750	MtrunA17_Chr1g0150451	32.331	266	137	10	86	350	108	331	9.34e-29	114

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1262750	AT3G06270.1	68.588	347	107	1	1	345	1	347	3.41e-174	490
Msa1262750	AT2G20050.1	63.636	319	112	1	40	354	97	415	7.49e-140	426
Msa1262750	AT2G20050.2	63.636	319	112	1	40	354	97	415	8.69e-140	426
Msa1262750	AT5G26010.1	33.333	234	126	5	80	301	67	282	1.53e-32	125
Msa1262750	AT5G27930.1	27.273	297	172	6	68	338	74	352	1.00e-30	121
Msa1262750	AT5G27930.2	27.273	297	172	6	68	338	74	352	1.00e-30	121
Msa1262750	AT5G36250.1	27.628	333	173	7	68	350	80	394	1.24e-30	122
Msa1262750	AT5G10740.1	32.155	283	149	10	60	339	36	278	2.20e-29	117
Msa1262750	AT5G10740.2	32.155	283	149	10	60	339	36	278	2.20e-29	117
Msa1262750	AT4G31750.2	32.157	255	132	9	86	339	64	278	7.00e-29	115

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Find 148 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTAGTACCTTTCGTG+GGG	0.692636	8_2:+65617338	None:intergenic
AAACTTTGTTAGAGATAGGT+TGG	0.504480	8_2:-65616588	Msa1262750:CDS
AACATAGAAATGTACCACTT+AGG	0.617985	8_2:+65614002	None:intergenic
AACCCGAATACCCATTTCTT+TGG	0.309531	8_2:-65616650	Msa1262750:CDS
AACTGGGTCCTATTGTCATT+CGG	0.471259	8_2:-65613642	None:intergenic
AAGACAATGAACCTCATACC+CGG	0.647246	8_2:+65613907	None:intergenic
AAGAGCTGTGATAGCTGTTA+AGG	0.361637	8_2:-65616384	Msa1262750:CDS
AAGCCAAACTGTTGTTGATA+TGG	0.388203	8_2:-65616009	Msa1262750:intron
AAGGAAAACCCTAATGAAGA+AGG	0.543390	8_2:+65617399	None:intergenic
AAGGAGTTTAGGGGATAGAT+TGG	0.411034	8_2:-65616138	Msa1262750:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTAGAAACTGTTTGATATTG+GGG	+	chr8_2:65613888-65613907	None:intergenic	30.0%
GGTAGAAACTGTTTGATATT+GGG	+	chr8_2:65613889-65613908	None:intergenic	30.0%
TTGACAACAACAAACAAATG+GGG	+	chr8_2:65614010-65614029	None:intergenic	30.0%
TCCAAAACAAAATTGTGTGA+AGG	+	chr8_2:65614369-65614388	None:intergenic	30.0%
TCCTAATGCAAAAACTATCT+TGG	+	chr8_2:65614446-65614465	None:intergenic	30.0%
CATCAAAAACACCAAAGAAA+TGG	+	chr8_2:65614494-65614513	None:intergenic	30.0%
GTTCAAACTTTGTTAGAGAT+AGG	-	chr8_2:65614538-65614557	Msa1262750:intron	30.0%
AAACTTTGTTAGAGATAGGT+TGG	-	chr8_2:65614542-65614561	Msa1262750:intron	30.0%
TTCTTTATTGTTGCTAGTGA+TGG	-	chr8_2:65615080-65615099	Msa1262750:intron	30.0%
ATACCATATCAACAACAGTT+TGG	+	chr8_2:65615127-65615146	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	65613643	65617509	65613643	ID=Msa1262750;Name=Msa1262750
chr8_2	mRNA	65613643	65617509	65613643	ID=Msa1262750-mRNA-1;Parent=Msa1262750;Name=Msa1262750-mRNA-1;_AED=0.02;_eAED=0.02;_QI=597\|1\|1\|1\|0.66\|0.75\|4\|473\|399
chr8_2	exon	65613643	65614076	65613643	ID=Msa1262750-mRNA-1:exon:21328;Parent=Msa1262750-mRNA-1
chr8_2	exon	65614170	65614370	65614170	ID=Msa1262750-mRNA-1:exon:21327;Parent=Msa1262750-mRNA-1
chr8_2	exon	65614870	65615004	65614870	ID=Msa1262750-mRNA-1:exon:21326;Parent=Msa1262750-mRNA-1
chr8_2	exon	65616010	65617509	65616010	ID=Msa1262750-mRNA-1:exon:21325;Parent=Msa1262750-mRNA-1
chr8_2	five_prime_UTR	65616913	65617509	65616913	ID=Msa1262750-mRNA-1:five_prime_utr;Parent=Msa1262750-mRNA-1
chr8_2	CDS	65616010	65616912	65616010	ID=Msa1262750-mRNA-1:cds;Parent=Msa1262750-mRNA-1
chr8_2	CDS	65614870	65615004	65614870	ID=Msa1262750-mRNA-1:cds;Parent=Msa1262750-mRNA-1
chr8_2	CDS	65614209	65614370	65614209	ID=Msa1262750-mRNA-1:cds;Parent=Msa1262750-mRNA-1
chr8_2	three_prime_UTR	65614170	65614208	65614170	ID=Msa1262750-mRNA-1:three_prime_utr;Parent=Msa1262750-mRNA-1
chr8_2	three_prime_UTR	65613643	65614076	65613643	ID=Msa1262750-mRNA-1:three_prime_utr;Parent=Msa1262750-mRNA-1

Gene Sequence

>Msa1262750

ATGGGTTGTGTTCATGGTAAATGTTGCTGTGTGAAATCTTCGGATGGCGGCTCTAGAAAACTTGGTTATCATCATAGCCATAGGAAGAACATACATGCTCAAAGAGTATTGAAAAATGTTTCTGTTCCTTCACACAATTTTGTTTTGGAGTATACCTTTCTCACACTGCGAGGTTACTACCCTGATTCGCTGGATAAGCAAAACCAAGATAGTTTTTGCATTAGGACGGAAATTCAAGGTAACCCGAATACCCATTTCTTTGGTGTTTTTGATGGGCATGGTCAATTTGGTAGTCAATGTTCAAACTTTGTTAGAGATAGGTTGGTAGAGAAGTTATCTAACGACCCTGAATTGGTGAAGGATCCTGTTCGAGCTTACAATTCTGCGTTCTCGGCAACAAATCACGAATTGCATACTAGTGACATTGATGATTCTATGAGTGGTACAACGGCTATTACAGTGCTTGTTGTTGGAGACACCCTTTATGTTGCTAATGTCGGTGATTCAAGAGCTGTGATAGCTGTTAAGGGTGGGGATCGGATTATTGCGGAGGACTTGTCCTCCGATCAGACACCATTTCGGAGAGATGAATACGAGAGAGTGAAACTTTGTGGAGCAAGGGTGTTGAGTGTTGATCAAGTGGAAGGGATTAAGGATCCAAATATCCAACACTGGGGTAACGAAGAGAGTTGGGATGGTGATCCTCCGAGATTGTGGTTCCCAAATGGGATGTTTCCTGGAACTGCATTTACAAGGAGTTTAGGGGATAGATTGGCGGAGACAATTGGTGTGGTTGCAACTCCAGAGGTGTCAATAGTTCAGCTTACACCTAATCATCTCTTCTTTATTGTTGCTAGTGATGGCATATTTGAATTCTTGTCAAGCCAAACTGTTGTTGATATGGCAGCAAGATATACAGATCCTCGTGATGCATGTGCGGCTATTGCTGAAGAGTCATATAAACTGTGGTCGGAACTTGTGAATCGAACAGATGATATAACAATTATCATTGTCCAGATTAAAGGACTCTCTAATAATTCAAGCACATCTGGAGTTCAATTAAGTGAGGTCAATGTCGGTACTGCTATGAGAACCAGGACAGGAACTTCTGAGATGTCTACTACCACTGAATTTGATGTTTATCATTCTGTGACGAACAGTTTCTCTGATTCACAATCCTGCCAGTCAAAGATCAGTTGA

Protein sequence

>Msa1262750

MGCVHGKCCCVKSSDGGSRKLGYHHSHRKNIHAQRVLKNVSVPSHNFVLEYTFLTLRGYYPDSLDKQNQDSFCIRTEIQGNPNTHFFGVFDGHGQFGSQCSNFVRDRLVEKLSNDPELVKDPVRAYNSAFSATNHELHTSDIDDSMSGTTAITVLVVGDTLYVANVGDSRAVIAVKGGDRIIAEDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGIKDPNIQHWGNEESWDGDPPRLWFPNGMFPGTAFTRSLGDRLAETIGVVATPEVSIVQLTPNHLFFIVASDGIFEFLSSQTVVDMAARYTDPRDACAAIAEESYKLWSELVNRTDDITIIIVQIKGLSNNSSTSGVQLSEVNVGTAMRTRTGTSEMSTTTEFDVYHSVTNSFSDSQSCQSKIS*