AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1262750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1262750 MtrunA17_Chr4g0066371 95.489 399 18 0 1 399 1 399 0.0 795
Msa1262750 MtrunA17_Chr2g0286951 69.231 403 118 4 1 399 1 401 0.0 553
Msa1262750 MtrunA17_Chr6g0486661 60.299 335 127 3 12 343 53 384 5.09e-135 412
Msa1262750 MtrunA17_Chr4g0004971 28.421 285 159 6 68 325 60 326 6.18e-31 121
Msa1262750 MtrunA17_Chr7g0243571 27.707 314 163 6 46 323 60 345 7.97e-31 122
Msa1262750 MtrunA17_Chr7g0221691 30.976 297 143 6 68 322 111 387 2.10e-30 121
Msa1262750 MtrunA17_Chr1g0192421 29.032 279 157 6 68 323 71 331 1.31e-29 117
Msa1262750 MtrunA17_Chr7g0249421 26.786 336 175 7 68 350 78 395 7.17e-29 117
Msa1262750 MtrunA17_Chr3g0136711 30.547 311 167 11 44 350 28 293 7.95e-29 114
Msa1262750 MtrunA17_Chr1g0150451 32.331 266 137 10 86 350 108 331 9.34e-29 114
Msa1262750 MtrunA17_Chr2g0295401 28.527 319 175 8 44 336 58 349 1.71e-28 114
Msa1262750 MtrunA17_Chr7g0272061 26.557 305 172 6 68 338 73 359 6.82e-27 110
Msa1262750 MtrunA17_Chr1g0151781 28.125 256 143 6 68 301 51 287 8.36e-27 109
Msa1262750 MtrunA17_Chr4g0067711 28.470 281 158 6 68 324 73 334 1.02e-26 109
Msa1262750 MtrunA17_Chr2g0324061 26.923 312 172 7 68 342 73 365 1.46e-26 110
Msa1262750 MtrunA17_Chr3g0105351 28.472 288 148 12 66 341 74 315 1.59e-26 108
Msa1262750 MtrunA17_Chr3g0105371 28.571 287 149 12 66 341 98 339 4.89e-26 107
Msa1262750 MtrunA17_Chr8g0342431 26.687 326 161 9 68 338 68 370 1.03e-25 107
Msa1262750 MtrunA17_Chr4g0022171 26.332 319 178 7 68 348 79 378 3.06e-25 107
Msa1262750 MtrunA17_Chr1g0212961 31.102 254 132 10 86 339 126 336 4.64e-25 104
Msa1262750 MtrunA17_Chr5g0430481 29.181 281 149 12 69 341 137 375 1.09e-24 104
Msa1262750 MtrunA17_Chr2g0317021 28.623 276 152 10 69 341 100 333 3.29e-24 102
Msa1262750 MtrunA17_Chr3g0126511 29.304 273 152 9 69 340 108 340 7.06e-24 101
Msa1262750 MtrunA17_Chr4g0065141 31.461 267 127 12 86 338 124 348 2.66e-23 100
Msa1262750 MtrunA17_Chr1g0150781 26.220 328 161 12 49 341 263 544 3.92e-22 98.2
Msa1262750 MtrunA17_Chr5g0407161 28.626 262 136 10 86 338 124 343 4.41e-22 97.1
Msa1262750 MtrunA17_Chr3g0135961 28.992 238 116 8 85 304 285 487 5.39e-21 95.1
Msa1262750 MtrunA17_Chr2g0293811 27.957 279 140 9 86 345 100 336 3.21e-20 91.3
Msa1262750 MtrunA17_Chr4g0070871 28.692 237 118 8 82 304 249 448 4.90e-20 92.0
Msa1262750 MtrunA17_Chr5g0426141 25.298 336 194 13 7 341 3 282 1.00e-19 88.6
Msa1262750 MtrunA17_Chr4g0051661 30.588 255 133 13 86 338 183 395 3.58e-19 88.6
Msa1262750 MtrunA17_Chr8g0360351 27.451 255 144 9 86 339 66 280 1.54e-18 85.1
Msa1262750 MtrunA17_Chr1g0194191 28.369 282 141 11 86 348 118 357 1.68e-18 86.7
Msa1262750 MtrunA17_Chr3g0138281 28.679 265 135 10 86 338 121 343 3.49e-18 85.5
Msa1262750 MtrunA17_Chr8g0389921 25.912 274 151 8 85 341 197 435 3.47e-17 83.2
Msa1262750 MtrunA17_Chr3g0144111 27.481 262 118 10 86 338 27 225 7.72e-16 77.0
Msa1262750 MtrunA17_Chr1g0185141 27.778 252 104 9 147 349 225 447 5.49e-14 73.9
Msa1262750 MtrunA17_Chr5g0435721 26.255 259 134 9 66 304 203 424 6.43e-14 73.2
Msa1262750 MtrunA17_Chr1g0171571 27.972 286 158 11 69 344 401 648 6.97e-14 73.6
Msa1262750 MtrunA17_Chr7g0225501 27.907 258 135 12 59 296 54 280 1.09e-12 69.3
Msa1262750 MtrunA17_Chr1g0209451 28.041 296 151 14 66 340 43 297 1.36e-12 68.9
Msa1262750 MtrunA17_Chr7g0271971 28.283 297 153 14 64 340 41 297 2.76e-12 67.8
Msa1262750 MtrunA17_Chr1g0192471 28.896 308 147 17 59 340 36 297 3.17e-12 67.8
Msa1262750 MtrunA17_Chr1g0175381 25.191 262 150 11 76 313 69 308 3.07e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1262750 AT3G06270.1 68.588 347 107 1 1 345 1 347 3.41e-174 490
Msa1262750 AT2G20050.1 63.636 319 112 1 40 354 97 415 7.49e-140 426
Msa1262750 AT2G20050.2 63.636 319 112 1 40 354 97 415 8.69e-140 426
Msa1262750 AT5G26010.1 33.333 234 126 5 80 301 67 282 1.53e-32 125
Msa1262750 AT5G27930.1 27.273 297 172 6 68 338 74 352 1.00e-30 121
Msa1262750 AT5G27930.2 27.273 297 172 6 68 338 74 352 1.00e-30 121
Msa1262750 AT5G36250.1 27.628 333 173 7 68 350 80 394 1.24e-30 122
Msa1262750 AT5G10740.1 32.155 283 149 10 60 339 36 278 2.20e-29 117
Msa1262750 AT5G10740.2 32.155 283 149 10 60 339 36 278 2.20e-29 117
Msa1262750 AT4G31750.2 32.157 255 132 9 86 339 64 278 7.00e-29 115
Msa1262750 AT4G31750.1 32.157 255 132 9 86 339 64 278 8.70e-29 114
Msa1262750 AT4G31750.3 32.157 255 132 9 86 339 64 278 8.70e-29 114
Msa1262750 AT4G32950.1 30.496 282 167 9 68 340 55 316 8.76e-29 115
Msa1262750 AT3G05640.2 29.818 275 157 6 68 324 75 331 1.36e-28 115
Msa1262750 AT3G05640.1 29.818 275 157 6 68 324 75 331 1.36e-28 115
Msa1262750 AT3G05640.3 29.818 275 157 6 68 324 75 331 1.36e-28 115
Msa1262750 AT5G01700.1 26.733 303 167 6 68 340 11 288 5.59e-28 113
Msa1262750 AT4G03415.1 27.187 320 175 8 68 348 80 380 6.20e-28 115
Msa1262750 AT4G03415.3 27.187 320 175 8 68 348 80 380 6.20e-28 115
Msa1262750 AT4G03415.2 27.187 320 175 8 68 348 80 380 6.20e-28 115
Msa1262750 AT5G01700.2 26.733 303 167 6 68 340 60 337 8.69e-28 113
Msa1262750 AT5G24940.1 32.692 260 124 10 86 339 64 278 9.68e-28 114
Msa1262750 AT5G36250.2 26.513 347 173 8 68 350 80 408 2.72e-27 113
Msa1262750 AT1G16220.1 26.347 334 180 7 68 356 77 389 3.02e-26 110
Msa1262750 AT1G03590.1 27.974 311 169 8 68 342 73 364 5.34e-26 109
Msa1262750 AT5G27930.3 29.070 258 139 6 68 299 74 313 6.56e-26 107
Msa1262750 AT1G78200.1 29.492 295 164 13 49 341 31 283 1.71e-25 105
Msa1262750 AT1G78200.3 29.492 295 164 13 49 341 31 283 1.71e-25 105
Msa1262750 AT1G78200.2 29.492 295 164 13 49 341 31 283 1.71e-25 105
Msa1262750 AT5G36250.3 28.889 270 126 6 68 289 80 331 4.11e-25 105
Msa1262750 AT3G02750.2 29.091 275 164 7 110 379 177 425 1.25e-24 105
Msa1262750 AT3G02750.1 29.091 275 164 7 110 379 177 425 1.25e-24 105
Msa1262750 AT1G78200.5 30.597 268 145 12 76 341 10 238 2.87e-24 100
Msa1262750 AT1G78200.4 30.597 268 145 12 76 341 10 238 2.87e-24 100
Msa1262750 AT3G16800.2 27.241 290 174 6 68 338 75 346 5.44e-24 102
Msa1262750 AT3G16800.1 27.241 290 174 6 68 338 75 346 5.44e-24 102
Msa1262750 AT3G16800.3 27.241 290 174 6 68 338 75 346 5.44e-24 102
Msa1262750 AT3G51470.2 29.252 294 153 13 58 338 30 281 6.73e-24 101
Msa1262750 AT5G53140.1 28.016 257 144 9 86 341 132 348 7.15e-24 102
Msa1262750 AT5G53140.2 28.016 257 144 9 86 341 132 348 7.15e-24 102
Msa1262750 AT3G51470.1 29.252 294 153 13 58 338 74 325 1.13e-23 101
Msa1262750 AT4G32950.2 33.188 229 126 8 68 289 55 263 1.49e-23 99.8
Msa1262750 AT1G07160.1 28.470 281 152 9 69 340 136 376 3.58e-23 100
Msa1262750 AT1G79630.1 30.000 200 119 4 142 338 216 397 2.10e-22 99.4
Msa1262750 AT1G79630.8 30.000 200 119 4 142 338 212 393 2.12e-22 99.4
Msa1262750 AT1G79630.2 30.000 200 119 4 142 338 146 327 2.24e-22 98.6
Msa1262750 AT1G79630.7 30.000 200 119 4 142 338 146 327 2.24e-22 98.6
Msa1262750 AT1G79630.6 30.000 200 119 4 142 338 106 287 2.85e-22 97.8
Msa1262750 AT1G79630.3 30.000 200 119 4 142 338 106 287 2.85e-22 97.8
Msa1262750 AT1G79630.4 30.000 200 119 4 142 338 106 287 2.85e-22 97.8
Msa1262750 AT1G79630.5 30.000 200 119 4 142 338 106 287 2.85e-22 97.8
Msa1262750 AT3G16800.4 27.509 269 158 6 89 338 1 251 2.92e-22 95.5
Msa1262750 AT3G16800.6 27.509 269 158 6 89 338 1 251 2.92e-22 95.5
Msa1262750 AT1G43900.1 28.467 274 154 9 69 341 137 369 2.21e-21 95.1
Msa1262750 AT2G40180.1 30.545 275 135 13 80 341 155 386 3.33e-19 89.0
Msa1262750 AT3G02750.3 28.188 298 172 10 110 379 177 460 4.18e-19 89.7
Msa1262750 AT1G17550.1 26.557 305 142 13 84 342 235 503 1.02e-18 88.2
Msa1262750 AT1G17550.2 26.557 305 142 13 84 342 235 503 1.02e-18 88.2
Msa1262750 AT1G72770.4 26.885 305 138 11 85 342 237 503 1.20e-18 88.2
Msa1262750 AT1G72770.1 26.885 305 138 11 85 342 237 503 1.20e-18 88.2
Msa1262750 AT1G72770.3 26.885 305 138 11 85 342 237 503 1.20e-18 88.2
Msa1262750 AT1G34750.2 26.966 267 153 11 76 341 57 282 1.25e-18 85.9
Msa1262750 AT1G34750.1 26.966 267 153 11 76 341 57 282 1.25e-18 85.9
Msa1262750 AT1G34750.3 26.966 267 153 11 76 341 57 282 1.25e-18 85.9
Msa1262750 AT3G15260.2 27.132 258 145 9 86 341 73 289 2.00e-18 85.5
Msa1262750 AT3G15260.1 27.132 258 145 9 86 341 73 289 2.00e-18 85.5
Msa1262750 AT1G22280.1 25.681 257 150 9 86 341 65 281 2.44e-18 85.1
Msa1262750 AT2G30020.1 27.972 286 148 11 69 341 153 393 2.82e-18 86.3
Msa1262750 AT2G20630.1 26.848 257 147 9 86 341 63 279 3.77e-18 84.3
Msa1262750 AT2G33700.1 27.037 270 146 9 78 338 115 342 7.01e-18 85.1
Msa1262750 AT4G28400.3 27.059 255 145 9 86 339 45 259 1.83e-17 82.0
Msa1262750 AT4G28400.1 27.059 255 145 9 86 339 67 281 1.88e-17 82.4
Msa1262750 AT2G20630.2 26.877 253 144 9 86 337 63 275 2.81e-17 82.0
Msa1262750 AT3G17250.1 26.812 276 137 10 86 338 158 391 1.26e-16 81.6
Msa1262750 AT1G09160.2 31.788 302 146 19 59 340 36 297 1.51e-16 81.3
Msa1262750 AT1G09160.1 31.788 302 146 19 59 340 36 297 1.51e-16 81.3
Msa1262750 AT1G22280.3 25.475 263 149 10 86 341 65 287 1.74e-16 79.7
Msa1262750 AT5G51760.2 29.412 255 118 8 75 302 103 322 2.27e-16 80.5
Msa1262750 AT5G51760.1 29.412 255 118 8 75 302 133 352 2.34e-16 80.9
Msa1262750 AT2G34740.1 25.000 272 161 10 69 338 102 332 1.58e-15 77.4
Msa1262750 AT2G29380.1 25.952 289 144 13 85 341 111 361 9.45e-15 75.5
Msa1262750 AT1G68410.4 30.928 291 149 15 66 340 48 302 5.65e-14 73.6
Msa1262750 AT1G68410.3 30.928 291 149 15 66 340 48 302 5.65e-14 73.6
Msa1262750 AT1G68410.1 30.928 291 149 15 66 340 48 302 5.65e-14 73.6
Msa1262750 AT1G68410.2 30.928 291 149 15 66 340 48 302 5.65e-14 73.6
Msa1262750 AT3G11410.1 27.347 245 117 11 83 302 134 342 2.29e-13 71.6
Msa1262750 AT2G34740.2 26.222 225 128 9 69 291 116 304 1.76e-12 68.2
Msa1262750 AT2G34740.3 26.222 225 128 9 69 291 98 286 2.16e-12 67.8
Msa1262750 AT1G72770.2 32.026 153 70 6 85 209 237 383 4.17e-12 67.8
Msa1262750 AT1G72770.5 32.026 153 70 6 85 209 237 383 4.17e-12 67.8
Msa1262750 AT1G47380.1 26.846 298 170 14 66 349 39 302 5.22e-11 64.3

Find 148 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTCGAGCCTTCTGAAATTT+TGG 0.145346 8_2:+65617042 None:intergenic
TCTCCAGGTGAGATTCTTTA+TGG 0.170664 8_2:+65613753 None:intergenic
TTTACCGGTCACTATATATT+TGG 0.177630 8_2:-65613943 Msa1262750:three_prime_UTR
TTGACTCTTCCTTCTTCATT+AGG 0.181058 8_2:-65617408 Msa1262750:five_prime_UTR
ATTATCATTGTCCAGATTAA+AGG 0.182707 8_2:-65614883 Msa1262750:CDS
CAAGTTGACGTGAAGAATTT+TGG 0.184990 8_2:+65617435 None:intergenic
TTACCCCAGTGTTGGATATT+TGG 0.226477 8_2:+65616233 None:intergenic
ACAGGATCCTTCACCAATTC+AGG 0.227180 8_2:+65616545 None:intergenic
TGACTCTTCCTTCTTCATTA+GGG 0.259340 8_2:-65617407 Msa1262750:five_prime_UTR
CTGCATTTACAAGGAGTTTA+GGG 0.266150 8_2:-65616148 Msa1262750:CDS
GGTAGAAACTGTTTGATATT+GGG 0.270066 8_2:+65617244 None:intergenic
TTGGGGTGACTTTGAGAAAA+AGG 0.276575 8_2:+65617262 None:intergenic
AGCTTACAATTCTGCGTTCT+CGG 0.277270 8_2:-65616519 Msa1262750:CDS
CATTGCTCCTGTACATTTAC+CGG 0.278853 8_2:-65613958 Msa1262750:three_prime_UTR
ACTGCATTTACAAGGAGTTT+AGG 0.296176 8_2:-65616149 Msa1262750:CDS
GGGTAGAAACTGTTTGATAT+TGG 0.298469 8_2:+65617243 None:intergenic
AACCCGAATACCCATTTCTT+TGG 0.309531 8_2:-65616650 Msa1262750:CDS
ACACCAAAGAAATGGGTATT+CGG 0.310857 8_2:+65616647 None:intergenic
TTCCCAAATGGGATGTTTCC+TGG 0.311843 8_2:-65616173 Msa1262750:CDS
GAAAATGCAATGAAGGTTCT+AGG 0.330257 8_2:+65617305 None:intergenic
TATTAGAGAGTCCTTTAATC+TGG 0.331443 8_2:+65614872 None:intergenic
TGATCAAGTGGAAGGGATTA+AGG 0.333034 8_2:-65616258 Msa1262750:CDS
TTTGATGGGCATGGTCAATT+TGG 0.349419 8_2:-65616623 Msa1262750:CDS
ACTTTGGAGTTACAATATAA+AGG 0.357621 8_2:-65617022 Msa1262750:five_prime_UTR
TTCTTTATTGTTGCTAGTGA+TGG 0.360065 8_2:-65616050 Msa1262750:CDS
AAGAGCTGTGATAGCTGTTA+AGG 0.361637 8_2:-65616384 Msa1262750:CDS
CACCAAAGAAATGGGTATTC+GGG 0.365530 8_2:+65616648 None:intergenic
GAACCCTAGAGCAACAAAAT+AGG 0.366174 8_2:+65617211 None:intergenic
GTTCCAGGAAACATCCCATT+TGG 0.370982 8_2:+65616170 None:intergenic
CACCGACATTAGCAACATAA+AGG 0.371740 8_2:+65616411 None:intergenic
CTCCTTGTAAATGCAGTTCC+AGG 0.374803 8_2:+65616155 None:intergenic
GTTCAAACTTTGTTAGAGAT+AGG 0.377026 8_2:-65616592 Msa1262750:CDS
ACATTGTAGTCAAGCACATC+TGG 0.378787 8_2:-65614357 Msa1262750:intron
ATTTGACAACAACAAACAAA+TGG 0.384968 8_2:+65617121 None:intergenic
AAGCCAAACTGTTGTTGATA+TGG 0.388203 8_2:-65616009 Msa1262750:intron
TGAAACATGGGTTGTGTTCA+TGG 0.388527 8_2:-65616896 Msa1262750:exon
TTTGACAACAACAAACAAAT+GGG 0.390923 8_2:+65617122 None:intergenic
ACAATAAAGAAGAGATGATT+AGG 0.391372 8_2:+65616062 None:intergenic
TTGTTTAGCCATACCCTCTC+TGG 0.391835 8_2:-65613797 Msa1262750:three_prime_UTR
CCTCTGTTTCTCTTCTCTGA+AGG 0.396265 8_2:-65617370 Msa1262750:five_prime_UTR
GAGTCAAATTTGAGGTCAAT+AGG 0.400805 8_2:+65617176 None:intergenic
AAGGAGTTTAGGGGATAGAT+TGG 0.411034 8_2:-65616138 Msa1262750:CDS
GTTATCTAACGACCCTGAAT+TGG 0.416488 8_2:-65616558 Msa1262750:CDS
GAGCATGTATGTTCTTCCTA+TGG 0.417871 8_2:+65616813 None:intergenic
CCTCCGATCAGACACCATTT+CGG 0.418476 8_2:-65616331 Msa1262750:CDS
CGAGATTGTGGTTCCCAAAT+GGG 0.427237 8_2:-65616184 Msa1262750:CDS
TGCAAAAGACTCAGAAAAGT+TGG 0.428627 8_2:+65613979 None:intergenic
TACGAGAGAGTGAAACTTTG+TGG 0.431653 8_2:-65616299 Msa1262750:CDS
CCGAGATTGTGGTTCCCAAA+TGG 0.432081 8_2:-65616185 Msa1262750:CDS
CACACAAGAAAATGCAATGA+AGG 0.433404 8_2:+65617298 None:intergenic
GCTATTACAGTGCTTGTTGT+TGG 0.438993 8_2:-65616440 Msa1262750:CDS
AATTTCAGAAGGCTCGACTT+TGG 0.440178 8_2:-65617038 Msa1262750:five_prime_UTR
TCCTTGTAGTTTCTCCTAAG+TGG 0.444679 8_2:-65614016 Msa1262750:three_prime_UTR
TCAACTGATCTTTGACTGGC+AGG 0.446192 8_2:+65614209 None:intergenic
TTCCAGGAAACATCCCATTT+GGG 0.447799 8_2:+65616171 None:intergenic
ATACCATATCAACAACAGTT+TGG 0.450437 8_2:+65616006 None:intergenic
ACTATATATTTGGTTGTTCA+AGG 0.453908 8_2:-65613933 Msa1262750:three_prime_UTR
GGGTATGAGGTTCATTGTCT+TGG 0.470077 8_2:-65613905 Msa1262750:three_prime_UTR
AACTGGGTCCTATTGTCATT+CGG 0.471259 8_2:-65613642 None:intergenic
GATAGATTGGCGGAGACAAT+TGG 0.474209 8_2:-65616125 Msa1262750:CDS
CTGGGGTAACGAAGAGAGTT+GGG 0.475410 8_2:-65616219 Msa1262750:CDS
GTAGAAACTGTTTGATATTG+GGG 0.476708 8_2:+65617245 None:intergenic
CATATCACCTGTTTGAAACA+TGG 0.489365 8_2:-65616909 Msa1262750:exon
GTTCAAGGCAGCCGGGTATG+AGG 0.489981 8_2:-65613918 Msa1262750:three_prime_UTR
ATTTGGTTGTTCAAGGCAGC+CGG 0.490140 8_2:-65613926 Msa1262750:three_prime_UTR
TCGTATTCATCTCTCCGAAA+TGG 0.490543 8_2:+65616317 None:intergenic
TTCCTGGAACTGCATTTACA+AGG 0.492066 8_2:-65616157 Msa1262750:CDS
TGCATTAGGACGGAAATTCA+AGG 0.496046 8_2:-65616674 Msa1262750:CDS
AATGAGAGAGACAGAAGAAG+TGG 0.499175 8_2:+65617458 None:intergenic
AGAGCTGTGATAGCTGTTAA+GGG 0.501730 8_2:-65616383 Msa1262750:CDS
ACCGACATTAGCAACATAAA+GGG 0.501992 8_2:+65616412 None:intergenic
GCAGAATTGTAAGCTCGAAC+AGG 0.504003 8_2:+65616527 None:intergenic
AAACTTTGTTAGAGATAGGT+TGG 0.504480 8_2:-65616588 Msa1262750:CDS
ACACAACCCATGTTTCAAAC+AGG 0.505574 8_2:+65616902 None:intergenic
AGCTGAACTATTGACACCTC+TGG 0.506076 8_2:+65616089 None:intergenic
GAGTGAAACTTTGTGGAGCA+AGG 0.507109 8_2:-65616292 Msa1262750:CDS
CAGAAAGTAGAAATTAGAGT+TGG 0.507926 8_2:-65613862 Msa1262750:three_prime_UTR
TTATTCAACTGATCTTTGAC+TGG 0.530616 8_2:+65614205 None:intergenic
CATCTCAGAAGTTCCTGTCC+TGG 0.530672 8_2:+65614293 None:intergenic
ACTGGGGTAACGAAGAGAGT+TGG 0.535227 8_2:-65616220 Msa1262750:CDS
GATGGCGGCTCTAGAAAACT+TGG 0.535769 8_2:-65616848 Msa1262750:CDS
GTAACCTCGCAGTGTGAGAA+AGG 0.536584 8_2:+65616736 None:intergenic
TGTGATAGCTGTTAAGGGTG+GGG 0.542620 8_2:-65616378 Msa1262750:CDS
AAGGAAAACCCTAATGAAGA+AGG 0.543390 8_2:+65617399 None:intergenic
CCATTTGGGAACCACAATCT+CGG 0.544156 8_2:+65616185 None:intergenic
CTGTGATAGCTGTTAAGGGT+GGG 0.544181 8_2:-65616379 Msa1262750:CDS
ACCCTTTATGTTGCTAATGT+CGG 0.544876 8_2:-65616413 Msa1262750:CDS
TTTGGTTGTTCAAGGCAGCC+GGG 0.547435 8_2:-65613925 Msa1262750:three_prime_UTR
ATAGTGACCGGTAAATGTAC+AGG 0.552466 8_2:+65613951 None:intergenic
AGGATCCAAATATCCAACAC+TGG 0.555282 8_2:-65616238 Msa1262750:CDS
TCTCCGAAATGGTGTCTGAT+CGG 0.558732 8_2:+65616328 None:intergenic
GAGTTTAGGGGATAGATTGG+CGG 0.561902 8_2:-65616135 Msa1262750:CDS
TCTCTTCGTTACCCCAGTGT+TGG 0.563931 8_2:+65616225 None:intergenic
ATATCACCTGTTTGAAACAT+GGG 0.564125 8_2:-65616908 Msa1262750:exon
GGATCCAAATATCCAACACT+GGG 0.565827 8_2:-65616237 Msa1262750:CDS
TCTTTACAGGGAACAAAGAG+AGG 0.567828 8_2:-65614063 Msa1262750:intron
CTTTACAGGGAACAAAGAGA+GGG 0.574860 8_2:-65614062 Msa1262750:intron
GATACAATAAAACATTCTCC+AGG 0.580533 8_2:+65613738 None:intergenic
TTGGTTATCATCATAGCCAT+AGG 0.581172 8_2:-65616829 Msa1262750:CDS
TAATTTCTACTTTCTGAACA+AGG 0.582956 8_2:+65613869 None:intergenic
GGGTGGGGATCGGATTATTG+CGG 0.585455 8_2:-65616363 Msa1262750:CDS
TCCAAAACAAAATTGTGTGA+AGG 0.592993 8_2:+65616764 None:intergenic
AGAGAAACAGAGGAACATGA+AGG 0.596213 8_2:+65617380 None:intergenic
AGTGAAACTTTGTGGAGCAA+GGG 0.598564 8_2:-65616291 Msa1262750:CDS
ACAACCAAATATATAGTGAC+CGG 0.600585 8_2:+65613939 None:intergenic
ACCACTTAGGAGAAACTACA+AGG 0.602100 8_2:+65614015 None:intergenic
CAGGATCCTTCACCAATTCA+GGG 0.602285 8_2:+65616546 None:intergenic
GGTGCACTGCACCCCACGAA+AGG 0.605517 8_2:-65617349 Msa1262750:five_prime_UTR
TTGACAACAACAAACAAATG+GGG 0.606410 8_2:+65617123 None:intergenic
TTTGCTTATCCAGCGAATCA+GGG 0.607172 8_2:+65616711 None:intergenic
ATGATCCCCAAAATTTCAGA+AGG 0.608023 8_2:-65617049 Msa1262750:five_prime_UTR
GCTGTGATAGCTGTTAAGGG+TGG 0.610038 8_2:-65616380 Msa1262750:CDS
CAATTAAGTGAGGTCAATGT+CGG 0.610601 8_2:-65614330 Msa1262750:CDS
TTGAGTGTTGATCAAGTGGA+AGG 0.612271 8_2:-65616266 Msa1262750:CDS
TAACGACCCTGAATTGGTGA+AGG 0.614068 8_2:-65616552 Msa1262750:CDS
ATGATAAACATCAAATTCAG+TGG 0.614811 8_2:+65614263 None:intergenic
TGCATTTACAAGGAGTTTAG+GGG 0.615174 8_2:-65616147 Msa1262750:CDS
AACATAGAAATGTACCACTT+AGG 0.617985 8_2:+65614002 None:intergenic
TCGGTACTGCTATGAGAACC+AGG 0.619300 8_2:-65614311 Msa1262750:CDS
AGAGTCATATAAACTGTGGT+CGG 0.621691 8_2:-65614935 Msa1262750:CDS
TAGCTGTTAAGGGTGGGGAT+CGG 0.622651 8_2:-65616373 Msa1262750:CDS
GGTGTTGAGTGTTGATCAAG+TGG 0.623023 8_2:-65616270 Msa1262750:CDS
ATGTTGCTGTGTGAAATCTT+CGG 0.625984 8_2:-65616870 Msa1262750:CDS
CCGAAATGGTGTCTGATCGG+AGG 0.627091 8_2:+65616331 None:intergenic
ACTGCTATGAGAACCAGGAC+AGG 0.627745 8_2:-65614306 Msa1262750:CDS
TGCTGTGTGAAATCTTCGGA+TGG 0.628217 8_2:-65616866 Msa1262750:CDS
AGATCCTCGTGATGCATGTG+CGG 0.629182 8_2:-65614968 Msa1262750:CDS
TAACCATAAAGAATCTCACC+TGG 0.646025 8_2:-65613756 Msa1262750:three_prime_UTR
GACATTGATGATTCTATGAG+TGG 0.646804 8_2:-65616470 Msa1262750:CDS
TGAGTGTTGATCAAGTGGAA+GGG 0.646966 8_2:-65616265 Msa1262750:CDS
AAGACAATGAACCTCATACC+CGG 0.647246 8_2:+65613907 None:intergenic
ATGGTGATCCTCCGAGATTG+TGG 0.650626 8_2:-65616196 Msa1262750:CDS
TGGGGATCGGATTATTGCGG+AGG 0.654548 8_2:-65616360 Msa1262750:CDS
GGTAACGAAGAGAGTTGGGA+TGG 0.656385 8_2:-65616215 Msa1262750:CDS
TGATTCTATGAGTGGTACAA+CGG 0.665201 8_2:-65616462 Msa1262750:CDS
GGAGAAACTACAAGGAGACC+TGG 0.666616 8_2:+65614023 None:intergenic
CCTTCAGAGAAGAGAAACAG+AGG 0.667033 8_2:+65617370 None:intergenic
ATCTGGAGTTCAATTAAGTG+AGG 0.669700 8_2:-65614340 Msa1262750:CDS
TTTACAGGGAACAAAGAGAG+GGG 0.669983 8_2:-65614061 Msa1262750:intron
CTGAAGAGTCATATAAACTG+TGG 0.672383 8_2:-65614939 Msa1262750:CDS
TGGTGTGGTTGCAACTCCAG+AGG 0.684152 8_2:-65616105 Msa1262750:CDS
TATACCTTTCTCACACTGCG+AGG 0.685306 8_2:-65616740 Msa1262750:CDS
AAAAGGTAGTACCTTTCGTG+GGG 0.692636 8_2:+65617338 None:intergenic
TGTGTGAAATCTTCGGATGG+CGG 0.698876 8_2:-65616863 Msa1262750:CDS
ATAGCCGCACATGCATCACG+AGG 0.723344 8_2:+65614964 None:intergenic
ATTGGCGGAGACAATTGGTG+TGG 0.737589 8_2:-65616120 Msa1262750:CDS
TTTGGGAACCACAATCTCGG+AGG 0.737719 8_2:+65616188 None:intergenic
GATCCAAATATCCAACACTG+GGG 0.772205 8_2:-65616236 Msa1262750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATCAATTATAAAGTAAAAT+TGG + chr8_2:65615596-65615615 None:intergenic 10.0%
!!! TTTTAGATTTGTATTATTAA+TGG - chr8_2:65616360-65616379 Msa1262750:CDS 10.0%
!!! CAATATATAATTTCTATTTT+TGG + chr8_2:65616511-65616530 None:intergenic 10.0%
!! CAAAAATAGAAATTATATAT+TGG - chr8_2:65616509-65616528 Msa1262750:CDS 10.0%
!! ATTTCTAATAAGTAGATAAT+AGG + chr8_2:65615401-65615420 None:intergenic 15.0%
!! ATTATAAAGTAAAATTGGAA+TGG + chr8_2:65615591-65615610 None:intergenic 15.0%
!! AAGTTAATACAAATGATAAA+TGG + chr8_2:65615870-65615889 None:intergenic 15.0%
!!! TTATCATTTGTATTAACTTT+TGG - chr8_2:65615871-65615890 Msa1262750:intron 15.0%
!!! TATTTTATATTGTTTGATCA+TGG - chr8_2:65617010-65617029 Msa1262750:five_prime_UTR 15.0%
!! AACAAAATAGGTAGAAAAAA+GGG + chr8_2:65613910-65613929 None:intergenic 20.0%
!!! AAGTTACTAATTTTGTAACT+AGG - chr8_2:65614050-65614069 Msa1262750:three_prime_UTR 20.0%
!!! AGTTACTAATTTTGTAACTA+GGG - chr8_2:65614051-65614070 Msa1262750:three_prime_UTR 20.0%
!! GAAAAAAAACAAAACTTTAC+AGG + chr8_2:65614145-65614164 None:intergenic 20.0%
!! TAGAAAAAAAAAACTAAGAG+AGG + chr8_2:65615159-65615178 None:intergenic 20.0%
!!! GAAGAAAAATCTTTACATTT+TGG - chr8_2:65615287-65615306 Msa1262750:intron 20.0%
!! CATTTAGATAATATCATCTT+AGG - chr8_2:65615345-65615364 Msa1262750:intron 20.0%
!! TATATATATATATATCCCCA+TGG - chr8_2:65615676-65615695 Msa1262750:intron 20.0%
!! ATATATATATATATCCCCAT+GGG - chr8_2:65615677-65615696 Msa1262750:intron 20.0%
!!! CTAAAATTTTAAAACAAGCT+TGG + chr8_2:65616346-65616365 None:intergenic 20.0%
!! AAAAAAATTCCTAAAGTCTA+TGG + chr8_2:65616460-65616479 None:intergenic 20.0%
!!! TCAATAAATACTTGCTATTT+GGG - chr8_2:65616577-65616596 Msa1262750:CDS 20.0%
!!! AAGTAACTAGAATTTTCTTT+TGG + chr8_2:65617315-65617334 None:intergenic 20.0%
!! AGCAAACAATAATTAAAAAC+TGG - chr8_2:65617471-65617490 Msa1262750:five_prime_UTR 20.0%
!! GCAAACAATAATTAAAAACT+GGG - chr8_2:65617472-65617491 Msa1262750:five_prime_UTR 20.0%
! CAACAAAATAGGTAGAAAAA+AGG + chr8_2:65613911-65613930 None:intergenic 25.0%
! CAAAAAAAGAGTCAAATTTG+AGG + chr8_2:65613965-65613984 None:intergenic 25.0%
!!! CTCAAATTTGACTCTTTTTT+TGG - chr8_2:65613963-65613982 Msa1262750:three_prime_UTR 25.0%
! TTTGACAACAACAAACAAAT+GGG + chr8_2:65614011-65614030 None:intergenic 25.0%
! ATTTGACAACAACAAACAAA+TGG + chr8_2:65614012-65614031 None:intergenic 25.0%
!!! ACTTTGGAGTTACAATATAA+AGG - chr8_2:65614108-65614127 Msa1262750:intron 25.0%
! ATCAAAAACACCAAAGAAAT+GGG + chr8_2:65614493-65614512 None:intergenic 25.0%
!!! ATTTCTTTGGTGTTTTTGAT+GGG - chr8_2:65614493-65614512 Msa1262750:intron 25.0%
! ACAATAAAGAAGAGATGATT+AGG + chr8_2:65615071-65615090 None:intergenic 25.0%
! GCAATTATGTTAATGGTTTA+TGG - chr8_2:65615501-65615520 Msa1262750:intron 25.0%
! GTTAATGGTTTATGGTTATT+CGG - chr8_2:65615509-65615528 Msa1262750:intron 25.0%
! TATATATATATATCCCCATG+GGG - chr8_2:65615678-65615697 Msa1262750:intron 25.0%
! GTAATATACAAACATAGGTT+AGG - chr8_2:65615700-65615719 Msa1262750:intron 25.0%
! AATTGTTTGTCACAATCATA+TGG - chr8_2:65615799-65615818 Msa1262750:intron 25.0%
! ATTGTTTGTCACAATCATAT+GGG - chr8_2:65615800-65615819 Msa1262750:intron 25.0%
! TAACTTCCAATTAAACGAAT+TGG + chr8_2:65615947-65615966 None:intergenic 25.0%
! ATATTCATCAAGATAAGAAG+GGG + chr8_2:65616107-65616126 None:intergenic 25.0%
! CATATTCATCAAGATAAGAA+GGG + chr8_2:65616108-65616127 None:intergenic 25.0%
! ACATATTCATCAAGATAAGA+AGG + chr8_2:65616109-65616128 None:intergenic 25.0%
!!! TGTGTTTTATTTGATTCTGT+AGG - chr8_2:65616126-65616145 Msa1262750:CDS 25.0%
! ATTATCATTGTCCAGATTAA+AGG - chr8_2:65616247-65616266 Msa1262750:CDS 25.0%
!! TAAAAGGAAAATGGTAATGA+AGG + chr8_2:65616311-65616330 None:intergenic 25.0%
! AACTACACATAAAAGGAAAA+TGG + chr8_2:65616320-65616339 None:intergenic 25.0%
!!! GATAATACCTTGTTTTTCAT+GGG + chr8_2:65616396-65616415 None:intergenic 25.0%
!!! AGATAATACCTTGTTTTTCA+TGG + chr8_2:65616397-65616416 None:intergenic 25.0%
!!! CTCAATAAATACTTGCTATT+TGG - chr8_2:65616576-65616595 Msa1262750:CDS 25.0%
!!! CAATAAATACTTGCTATTTG+GGG - chr8_2:65616578-65616597 Msa1262750:CDS 25.0%
!! CTCTACATGTTTTTCTTTTT+GGG + chr8_2:65616643-65616662 None:intergenic 25.0%
! AATTTGAATCAACTCATCAT+TGG - chr8_2:65616722-65616741 Msa1262750:CDS 25.0%
! ATGATAAACATCAAATTCAG+TGG + chr8_2:65616870-65616889 None:intergenic 25.0%
! ACTATATATTTGGTTGTTCA+AGG - chr8_2:65617197-65617216 Msa1262750:five_prime_UTR 25.0%
! TAATTTCTACTTTCTGAACA+AGG + chr8_2:65617264-65617283 None:intergenic 25.0%
!!! TTTTTTTTTCTTTCCAGAGA+GGG + chr8_2:65617349-65617368 None:intergenic 25.0%
!!! ATTTTTTTTTCTTTCCAGAG+AGG + chr8_2:65617350-65617369 None:intergenic 25.0%
! TTCTAGGAAAGAGACAAAAA+AGG + chr8_2:65613812-65613831 None:intergenic 30.0%
GTAGAAACTGTTTGATATTG+GGG + chr8_2:65613888-65613907 None:intergenic 30.0%
GGTAGAAACTGTTTGATATT+GGG + chr8_2:65613889-65613908 None:intergenic 30.0%
TTGACAACAACAAACAAATG+GGG + chr8_2:65614010-65614029 None:intergenic 30.0%
! ATATCACCTGTTTGAAACAT+GGG - chr8_2:65614222-65614241 Msa1262750:CDS 30.0%
!! TCCTTCACACAATTTTGTTT+TGG - chr8_2:65614365-65614384 Msa1262750:intron 30.0%
TCCAAAACAAAATTGTGTGA+AGG + chr8_2:65614369-65614388 None:intergenic 30.0%
! ACCAAGATAGTTTTTGCATT+AGG - chr8_2:65614442-65614461 Msa1262750:intron 30.0%
TCCTAATGCAAAAACTATCT+TGG + chr8_2:65614446-65614465 None:intergenic 30.0%
! AGATAGTTTTTGCATTAGGA+CGG - chr8_2:65614446-65614465 Msa1262750:intron 30.0%
CATCAAAAACACCAAAGAAA+TGG + chr8_2:65614494-65614513 None:intergenic 30.0%
!!! CATTTCTTTGGTGTTTTTGA+TGG - chr8_2:65614492-65614511 Msa1262750:intron 30.0%
GTTCAAACTTTGTTAGAGAT+AGG - chr8_2:65614538-65614557 Msa1262750:intron 30.0%
AAACTTTGTTAGAGATAGGT+TGG - chr8_2:65614542-65614561 Msa1262750:intron 30.0%
TTCTTTATTGTTGCTAGTGA+TGG - chr8_2:65615080-65615099 Msa1262750:intron 30.0%
ATACCATATCAACAACAGTT+TGG + chr8_2:65615127-65615146 None:intergenic 30.0%
!! TTACATTTTGGCCACAATTA+TGG - chr8_2:65615299-65615318 Msa1262750:intron 30.0%
GAAATCGTATCATCTATCAA+TGG - chr8_2:65615416-65615435 Msa1262750:intron 30.0%
!! AAGACTTTGACTTGAAAATC+AGG - chr8_2:65615456-65615475 Msa1262750:intron 30.0%
TCTGTGTGCAATTATGTTAA+TGG - chr8_2:65615494-65615513 Msa1262750:intron 30.0%
AATTGGAATGGTATTTAGCT+TGG + chr8_2:65615579-65615598 None:intergenic 30.0%
ATGTTTGTATATTACCCCAT+GGG + chr8_2:65615695-65615714 None:intergenic 30.0%
TATGTTTGTATATTACCCCA+TGG + chr8_2:65615696-65615715 None:intergenic 30.0%
ATGGGGTAATATACAAACAT+AGG - chr8_2:65615695-65615714 Msa1262750:intron 30.0%
! TTCCTTGTTTAGCATAACTA+TGG - chr8_2:65615723-65615742 Msa1262750:intron 30.0%
AACCATAGTTATGCTAAACA+AGG + chr8_2:65615728-65615747 None:intergenic 30.0%
ATAACTATGGTTCATTTACC+AGG - chr8_2:65615736-65615755 Msa1262750:intron 30.0%
AATATATTTGCACAACTACC+TGG + chr8_2:65615757-65615776 None:intergenic 30.0%
CCTAATTAACAGATGGAATT+TGG + chr8_2:65615842-65615861 None:intergenic 30.0%
CCAAATTCCATCTGTTAATT+AGG - chr8_2:65615839-65615858 Msa1262750:intron 30.0%
CAATTGCCAATTCGTTTAAT+TGG - chr8_2:65615938-65615957 Msa1262750:intron 30.0%
!!! ACTGTGTAGAATTTTAACTC+TGG - chr8_2:65616074-65616093 Msa1262750:CDS 30.0%
TATTAGAGAGTCCTTTAATC+TGG + chr8_2:65616261-65616280 None:intergenic 30.0%
AAGGACTCTCTAATAATGTA+TGG - chr8_2:65616266-65616285 Msa1262750:CDS 30.0%
TTGGAGAAACTACACATAAA+AGG + chr8_2:65616327-65616346 None:intergenic 30.0%
TTCTTATCCCATGAAAAACA+AGG - chr8_2:65616386-65616405 Msa1262750:CDS 30.0%
! ACAAGGTATTATCTCATCAA+AGG - chr8_2:65616403-65616422 Msa1262750:CDS 30.0%
! CAAGGTATTATCTCATCAAA+GGG - chr8_2:65616404-65616423 Msa1262750:CDS 30.0%
! AAGGTATTATCTCATCAAAG+GGG - chr8_2:65616405-65616424 Msa1262750:CDS 30.0%
ATTAATCAAAGTTATTCCCC+TGG + chr8_2:65616432-65616451 None:intergenic 30.0%
TAATTCACTCCATAGACTTT+AGG - chr8_2:65616448-65616467 Msa1262750:CDS 30.0%
! GCTCTACATGTTTTTCTTTT+TGG + chr8_2:65616644-65616663 None:intergenic 30.0%
CAAAATCAAAATCTTGCTAC+TGG - chr8_2:65616690-65616709 Msa1262750:CDS 30.0%
TTATTCAACTGATCTTTGAC+TGG + chr8_2:65616928-65616947 None:intergenic 30.0%
GTAAAGAAAATAGGAGGAAA+AGG + chr8_2:65617054-65617073 None:intergenic 30.0%
! TTTCCTCCTATTTTCTTTAC+AGG - chr8_2:65617054-65617073 Msa1262750:five_prime_UTR 30.0%
! TTCCTCCTATTTTCTTTACA+GGG - chr8_2:65617055-65617074 Msa1262750:five_prime_UTR 30.0%
TTGTTCCCTGTAAAGAAAAT+AGG + chr8_2:65617063-65617082 None:intergenic 30.0%
AACATAGAAATGTACCACTT+AGG + chr8_2:65617131-65617150 None:intergenic 30.0%
TTTACCGGTCACTATATATT+TGG - chr8_2:65617187-65617206 Msa1262750:five_prime_UTR 30.0%
ACAACCAAATATATAGTGAC+CGG + chr8_2:65617194-65617213 None:intergenic 30.0%
CAGAAAGTAGAAATTAGAGT+TGG - chr8_2:65617268-65617287 Msa1262750:five_prime_UTR 30.0%
GATACAATAAAACATTCTCC+AGG + chr8_2:65617395-65617414 None:intergenic 30.0%
!! CAAGTTGACGTGAAGAATTT+TGG + chr8_2:65613698-65613717 None:intergenic 35.0%
TTGACTCTTCCTTCTTCATT+AGG - chr8_2:65613722-65613741 Msa1262750:three_prime_UTR 35.0%
TGACTCTTCCTTCTTCATTA+GGG - chr8_2:65613723-65613742 Msa1262750:three_prime_UTR 35.0%
AAGGAAAACCCTAATGAAGA+AGG + chr8_2:65613734-65613753 None:intergenic 35.0%
AAAAAGGTAGTACCTTTCGT+GGG + chr8_2:65613796-65613815 None:intergenic 35.0%
AAAAAAGGTAGTACCTTTCG+TGG + chr8_2:65613797-65613816 None:intergenic 35.0%
GAAAATGCAATGAAGGTTCT+AGG + chr8_2:65613828-65613847 None:intergenic 35.0%
CACACAAGAAAATGCAATGA+AGG + chr8_2:65613835-65613854 None:intergenic 35.0%
! TTTGAGAAAAAGGTGCAAGT+GGG + chr8_2:65613861-65613880 None:intergenic 35.0%
GGGTAGAAACTGTTTGATAT+TGG + chr8_2:65613890-65613909 None:intergenic 35.0%
! TCTACCTATTTTGTTGCTCT+AGG - chr8_2:65613915-65613934 Msa1262750:three_prime_UTR 35.0%
! CTACCTATTTTGTTGCTCTA+GGG - chr8_2:65613916-65613935 Msa1262750:three_prime_UTR 35.0%
! GAGTCAAATTTGAGGTCAAT+AGG + chr8_2:65613957-65613976 None:intergenic 35.0%
ATGATCCCCAAAATTTCAGA+AGG - chr8_2:65614081-65614100 Msa1262750:intron 35.0%
! CATATCACCTGTTTGAAACA+TGG - chr8_2:65614221-65614240 Msa1262750:CDS 35.0%
ATGTTGCTGTGTGAAATCTT+CGG - chr8_2:65614260-65614279 Msa1262750:CDS 35.0%
TTGGTTATCATCATAGCCAT+AGG - chr8_2:65614301-65614320 Msa1262750:CDS 35.0%
ACACCAAAGAAATGGGTATT+CGG + chr8_2:65614486-65614505 None:intergenic 35.0%
! GACATTGATGATTCTATGAG+TGG - chr8_2:65614660-65614679 Msa1262750:intron 35.0%
TGATTCTATGAGTGGTACAA+CGG - chr8_2:65614668-65614687 Msa1262750:intron 35.0%
ACCCTTTATGTTGCTAATGT+CGG - chr8_2:65614717-65614736 Msa1262750:intron 35.0%
ACCGACATTAGCAACATAAA+GGG + chr8_2:65614721-65614740 None:intergenic 35.0%
ACTGCATTTACAAGGAGTTT+AGG - chr8_2:65614981-65615000 Msa1262750:CDS 35.0%
CTGCATTTACAAGGAGTTTA+GGG - chr8_2:65614982-65615001 Msa1262750:CDS 35.0%
TGCATTTACAAGGAGTTTAG+GGG - chr8_2:65614983-65615002 Msa1262750:CDS 35.0%
AAGCCAAACTGTTGTTGATA+TGG - chr8_2:65615121-65615140 Msa1262750:intron 35.0%
GTTGATATTGTGAATGACTG+TGG - chr8_2:65615219-65615238 Msa1262750:intron 35.0%
! TTTGGCCACAATTATGGTTT+TGG - chr8_2:65615305-65615324 Msa1262750:intron 35.0%
TGTTTGTATATTACCCCATG+GGG + chr8_2:65615694-65615713 None:intergenic 35.0%
GGATAGACCTAATTAACAGA+TGG + chr8_2:65615849-65615868 None:intergenic 35.0%
!!! TGTAGAATTTTAACTCTGGC+AGG - chr8_2:65616078-65616097 Msa1262750:CDS 35.0%
CTGAAGAGTCATATAAACTG+TGG - chr8_2:65616191-65616210 Msa1262750:CDS 35.0%
AGAGTCATATAAACTGTGGT+CGG - chr8_2:65616195-65616214 Msa1262750:CDS 35.0%
AGGTATTATCTCATCAAAGG+GGG - chr8_2:65616406-65616425 Msa1262750:CDS 35.0%
AATCCTTAACATGTGTCCTT+AGG - chr8_2:65616601-65616620 Msa1262750:CDS 35.0%
ATCCTTAACATGTGTCCTTA+GGG - chr8_2:65616602-65616621 Msa1262750:CDS 35.0%
! ATCTGGAGTTCAATTAAGTG+AGG - chr8_2:65616790-65616809 Msa1262750:CDS 35.0%
CAATTAAGTGAGGTCAATGT+CGG - chr8_2:65616800-65616819 Msa1262750:CDS 35.0%
TTCCCTGTAAAGAAAATAGG+AGG + chr8_2:65617060-65617079 None:intergenic 35.0%
TGCAAAAGACTCAGAAAAGT+TGG + chr8_2:65617154-65617173 None:intergenic 35.0%
!!! TCTTTTGGTTTCATGTGTCT+TGG + chr8_2:65617300-65617319 None:intergenic 35.0%
TAACCATAAAGAATCTCACC+TGG - chr8_2:65617374-65617393 Msa1262750:five_prime_UTR 35.0%
AATGAGAGAGACAGAAGAAG+TGG + chr8_2:65613675-65613694 None:intergenic 40.0%
AGAGAAACAGAGGAACATGA+AGG + chr8_2:65613753-65613772 None:intergenic 40.0%
AAAAGGTAGTACCTTTCGTG+GGG + chr8_2:65613795-65613814 None:intergenic 40.0%
! CTTTGAGAAAAAGGTGCAAG+TGG + chr8_2:65613862-65613881 None:intergenic 40.0%
! TTGGGGTGACTTTGAGAAAA+AGG + chr8_2:65613871-65613890 None:intergenic 40.0%
GAACCCTAGAGCAACAAAAT+AGG + chr8_2:65613922-65613941 None:intergenic 40.0%
!!! TCGAGCCTTCTGAAATTTTG+GGG + chr8_2:65614089-65614108 None:intergenic 40.0%
!!! GTCGAGCCTTCTGAAATTTT+GGG + chr8_2:65614090-65614109 None:intergenic 40.0%
!!! AGTCGAGCCTTCTGAAATTT+TGG + chr8_2:65614091-65614110 None:intergenic 40.0%
AATTTCAGAAGGCTCGACTT+TGG - chr8_2:65614092-65614111 Msa1262750:intron 40.0%
ACACAACCCATGTTTCAAAC+AGG + chr8_2:65614231-65614250 None:intergenic 40.0%
! TGAAACATGGGTTGTGTTCA+TGG - chr8_2:65614234-65614253 Msa1262750:CDS 40.0%
GAGCATGTATGTTCTTCCTA+TGG + chr8_2:65614320-65614339 None:intergenic 40.0%
TTTGCTTATCCAGCGAATCA+GGG + chr8_2:65614422-65614441 None:intergenic 40.0%
! TTTTGCTTATCCAGCGAATC+AGG + chr8_2:65614423-65614442 None:intergenic 40.0%
TGCATTAGGACGGAAATTCA+AGG - chr8_2:65614456-65614475 Msa1262750:intron 40.0%
AACCCGAATACCCATTTCTT+TGG - chr8_2:65614480-65614499 Msa1262750:intron 40.0%
CACCAAAGAAATGGGTATTC+GGG + chr8_2:65614485-65614504 None:intergenic 40.0%
!!! TTTGGTGTTTTTGATGGGCA+TGG - chr8_2:65614498-65614517 Msa1262750:intron 40.0%
! TTTGATGGGCATGGTCAATT+TGG - chr8_2:65614507-65614526 Msa1262750:intron 40.0%
GTTATCTAACGACCCTGAAT+TGG - chr8_2:65614572-65614591 Msa1262750:intron 40.0%
AGCTTACAATTCTGCGTTCT+CGG - chr8_2:65614611-65614630 Msa1262750:intron 40.0%
!! GCTATTACAGTGCTTGTTGT+TGG - chr8_2:65614690-65614709 Msa1262750:intron 40.0%
CACCGACATTAGCAACATAA+AGG + chr8_2:65614722-65614741 None:intergenic 40.0%
AAGAGCTGTGATAGCTGTTA+AGG - chr8_2:65614746-65614765 Msa1262750:intron 40.0%
AGAGCTGTGATAGCTGTTAA+GGG - chr8_2:65614747-65614766 Msa1262750:intron 40.0%
TCGTATTCATCTCTCCGAAA+TGG + chr8_2:65614816-65614835 None:intergenic 40.0%
TACGAGAGAGTGAAACTTTG+TGG - chr8_2:65614831-65614850 Msa1262750:intron 40.0%
AGTGAAACTTTGTGGAGCAA+GGG - chr8_2:65614839-65614858 Msa1262750:intron 40.0%
!! TTGAGTGTTGATCAAGTGGA+AGG - chr8_2:65614864-65614883 Msa1262750:intron 40.0%
!! TGAGTGTTGATCAAGTGGAA+GGG - chr8_2:65614865-65614884 Msa1262750:intron 40.0%
TGATCAAGTGGAAGGGATTA+AGG - chr8_2:65614872-65614891 Msa1262750:CDS 40.0%
AGGATCCAAATATCCAACAC+TGG - chr8_2:65614892-65614911 Msa1262750:CDS 40.0%
GGATCCAAATATCCAACACT+GGG - chr8_2:65614893-65614912 Msa1262750:CDS 40.0%
GATCCAAATATCCAACACTG+GGG - chr8_2:65614894-65614913 Msa1262750:CDS 40.0%
! TTACCCCAGTGTTGGATATT+TGG + chr8_2:65614900-65614919 None:intergenic 40.0%
TTCCAGGAAACATCCCATTT+GGG + chr8_2:65614962-65614981 None:intergenic 40.0%
TTCCTGGAACTGCATTTACA+AGG - chr8_2:65614973-65614992 Msa1262750:CDS 40.0%
AAGGAGTTTAGGGGATAGAT+TGG - chr8_2:65614992-65615011 Msa1262750:intron 40.0%
TTGTGAATGACTGTGGACAA+AGG - chr8_2:65615226-65615245 Msa1262750:intron 40.0%
TGTCTGATGCTGCCAAATTA+TGG - chr8_2:65615249-65615268 Msa1262750:intron 40.0%
GCAGTCCAAAACCATAATTG+TGG + chr8_2:65615313-65615332 None:intergenic 40.0%
!! TACAGTATTGCAACGGGTTA+GGG + chr8_2:65616019-65616038 None:intergenic 40.0%
AGTGTCTACAGTATTGCAAC+GGG + chr8_2:65616025-65616044 None:intergenic 40.0%
CAGTGTCTACAGTATTGCAA+CGG + chr8_2:65616026-65616045 None:intergenic 40.0%
TTCTACACAGTAATGCAGCA+GGG + chr8_2:65616065-65616084 None:intergenic 40.0%
ATTCTACACAGTAATGCAGC+AGG + chr8_2:65616066-65616085 None:intergenic 40.0%
ACATTGTAGTCAAGCACATC+TGG - chr8_2:65616773-65616792 Msa1262750:CDS 40.0%
TCTTTACAGGGAACAAAGAG+AGG - chr8_2:65617067-65617086 Msa1262750:five_prime_UTR 40.0%
CTTTACAGGGAACAAAGAGA+GGG - chr8_2:65617068-65617087 Msa1262750:five_prime_UTR 40.0%
TTTACAGGGAACAAAGAGAG+GGG - chr8_2:65617069-65617088 Msa1262750:five_prime_UTR 40.0%
! GAACAAAGAGAGGGGTTTTA+CGG - chr8_2:65617077-65617096 Msa1262750:five_prime_UTR 40.0%
TCCTTGTAGTTTCTCCTAAG+TGG - chr8_2:65617114-65617133 Msa1262750:five_prime_UTR 40.0%
ACCACTTAGGAGAAACTACA+AGG + chr8_2:65617118-65617137 None:intergenic 40.0%
CATTGCTCCTGTACATTTAC+CGG - chr8_2:65617172-65617191 Msa1262750:five_prime_UTR 40.0%
ATAGTGACCGGTAAATGTAC+AGG + chr8_2:65617182-65617201 None:intergenic 40.0%
AAGACAATGAACCTCATACC+CGG + chr8_2:65617226-65617245 None:intergenic 40.0%
CATTGTCTTGGCAGCAAAAA+TGG - chr8_2:65617237-65617256 Msa1262750:five_prime_UTR 40.0%
! TTTTCTTTCCAGAGAGGGTA+TGG + chr8_2:65617344-65617363 None:intergenic 40.0%
TCTCCAGGTGAGATTCTTTA+TGG + chr8_2:65617380-65617399 None:intergenic 40.0%
CCTTCAGAGAAGAGAAACAG+AGG + chr8_2:65613763-65613782 None:intergenic 45.0%
! CCTCTGTTTCTCTTCTCTGA+AGG - chr8_2:65613760-65613779 Msa1262750:three_prime_UTR 45.0%
TGCTGTGTGAAATCTTCGGA+TGG - chr8_2:65614264-65614283 Msa1262750:CDS 45.0%
TGTGTGAAATCTTCGGATGG+CGG - chr8_2:65614267-65614286 Msa1262750:CDS 45.0%
TATACCTTTCTCACACTGCG+AGG - chr8_2:65614390-65614409 Msa1262750:intron 45.0%
TAACGACCCTGAATTGGTGA+AGG - chr8_2:65614578-65614597 Msa1262750:intron 45.0%
CAGGATCCTTCACCAATTCA+GGG + chr8_2:65614587-65614606 None:intergenic 45.0%
ACAGGATCCTTCACCAATTC+AGG + chr8_2:65614588-65614607 None:intergenic 45.0%
GCAGAATTGTAAGCTCGAAC+AGG + chr8_2:65614606-65614625 None:intergenic 45.0%
CTGTGATAGCTGTTAAGGGT+GGG - chr8_2:65614751-65614770 Msa1262750:intron 45.0%
TGTGATAGCTGTTAAGGGTG+GGG - chr8_2:65614752-65614771 Msa1262750:intron 45.0%
TCTCCGAAATGGTGTCTGAT+CGG + chr8_2:65614805-65614824 None:intergenic 45.0%
GAGTGAAACTTTGTGGAGCA+AGG - chr8_2:65614838-65614857 Msa1262750:intron 45.0%
!! GGTGTTGAGTGTTGATCAAG+TGG - chr8_2:65614860-65614879 Msa1262750:intron 45.0%
CCATTTGGGAACCACAATCT+CGG + chr8_2:65614948-65614967 None:intergenic 45.0%
CGAGATTGTGGTTCCCAAAT+GGG - chr8_2:65614946-65614965 Msa1262750:CDS 45.0%
TTCCCAAATGGGATGTTTCC+TGG - chr8_2:65614957-65614976 Msa1262750:CDS 45.0%
GTTCCAGGAAACATCCCATT+TGG + chr8_2:65614963-65614982 None:intergenic 45.0%
CTCCTTGTAAATGCAGTTCC+AGG + chr8_2:65614978-65614997 None:intergenic 45.0%
GAGTTTAGGGGATAGATTGG+CGG - chr8_2:65614995-65615014 Msa1262750:intron 45.0%
GATAGATTGGCGGAGACAAT+TGG - chr8_2:65615005-65615024 Msa1262750:intron 45.0%
AGCTGAACTATTGACACCTC+TGG + chr8_2:65615044-65615063 None:intergenic 45.0%
ATGCTGCCAAATTATGGCTG+TGG - chr8_2:65615255-65615274 Msa1262750:intron 45.0%
ACCACACCACAGCCATAATT+TGG + chr8_2:65615264-65615283 None:intergenic 45.0%
! CTACAGTATTGCAACGGGTT+AGG + chr8_2:65616020-65616039 None:intergenic 45.0%
AGCCCTAAGGACACATGTTA+AGG + chr8_2:65616607-65616626 None:intergenic 45.0%
TCAACTGATCTTTGACTGGC+AGG + chr8_2:65616924-65616943 None:intergenic 45.0%
ATTTGGTTGTTCAAGGCAGC+CGG - chr8_2:65617204-65617223 Msa1262750:five_prime_UTR 45.0%
GGGTATGAGGTTCATTGTCT+TGG - chr8_2:65617225-65617244 Msa1262750:five_prime_UTR 45.0%
TTGTTTAGCCATACCCTCTC+TGG - chr8_2:65617333-65617352 Msa1262750:five_prime_UTR 45.0%
!!! TAATACATAATTTTTTTTAT+TGG + chr8_2:65616488-65616507 None:intergenic 5.0%
!! GATGGCGGCTCTAGAAAACT+TGG - chr8_2:65614282-65614301 Msa1262750:CDS 50.0%
GTAACCTCGCAGTGTGAGAA+AGG + chr8_2:65614397-65614416 None:intergenic 50.0%
! AGGTTACTACCCTGATTCGC+TGG - chr8_2:65614410-65614429 Msa1262750:intron 50.0%
GCTGTGATAGCTGTTAAGGG+TGG - chr8_2:65614750-65614769 Msa1262750:intron 50.0%
TAGCTGTTAAGGGTGGGGAT+CGG - chr8_2:65614757-65614776 Msa1262750:intron 50.0%
CCTCCGATCAGACACCATTT+CGG - chr8_2:65614799-65614818 Msa1262750:intron 50.0%
TCTCTTCGTTACCCCAGTGT+TGG + chr8_2:65614908-65614927 None:intergenic 50.0%
ACTGGGGTAACGAAGAGAGT+TGG - chr8_2:65614910-65614929 Msa1262750:CDS 50.0%
CTGGGGTAACGAAGAGAGTT+GGG - chr8_2:65614911-65614930 Msa1262750:CDS 50.0%
GGTAACGAAGAGAGTTGGGA+TGG - chr8_2:65614915-65614934 Msa1262750:CDS 50.0%
ATGGTGATCCTCCGAGATTG+TGG - chr8_2:65614934-65614953 Msa1262750:CDS 50.0%
TTTGGGAACCACAATCTCGG+AGG + chr8_2:65614945-65614964 None:intergenic 50.0%
CCGAGATTGTGGTTCCCAAA+TGG - chr8_2:65614945-65614964 Msa1262750:CDS 50.0%
ATTGGCGGAGACAATTGGTG+TGG - chr8_2:65615010-65615029 Msa1262750:intron 50.0%
GCCAAATTATGGCTGTGGTG+TGG - chr8_2:65615260-65615279 Msa1262750:intron 50.0%
AGATCCTCGTGATGCATGTG+CGG - chr8_2:65616162-65616181 Msa1262750:CDS 50.0%
TTATCTCATCAAAGGGGGCC+AGG - chr8_2:65616411-65616430 Msa1262750:CDS 50.0%
TATCTCATCAAAGGGGGCCA+GGG - chr8_2:65616412-65616431 Msa1262750:CDS 50.0%
CCATGCTAACATGAGCCCTA+AGG + chr8_2:65616620-65616639 None:intergenic 50.0%
CCTTAGGGCTCATGTTAGCA+TGG - chr8_2:65616617-65616636 Msa1262750:CDS 50.0%
TCGGTACTGCTATGAGAACC+AGG - chr8_2:65616819-65616838 Msa1262750:CDS 50.0%
ACTGCTATGAGAACCAGGAC+AGG - chr8_2:65616824-65616843 Msa1262750:CDS 50.0%
CATCTCAGAAGTTCCTGTCC+TGG + chr8_2:65616840-65616859 None:intergenic 50.0%
GGAGAAACTACAAGGAGACC+TGG + chr8_2:65617110-65617129 None:intergenic 50.0%
TTTGGTTGTTCAAGGCAGCC+GGG - chr8_2:65617205-65617224 Msa1262750:five_prime_UTR 50.0%
GGGTGGGGATCGGATTATTG+CGG - chr8_2:65614767-65614786 Msa1262750:intron 55.0%
TGGGGATCGGATTATTGCGG+AGG - chr8_2:65614770-65614789 Msa1262750:intron 55.0%
CCGAAATGGTGTCTGATCGG+AGG + chr8_2:65614802-65614821 None:intergenic 55.0%
TGGTGTGGTTGCAACTCCAG+AGG - chr8_2:65615025-65615044 Msa1262750:intron 55.0%
! AAACTTGCCCTGCTTGCTGC+TGG - chr8_2:65615989-65616008 Msa1262750:intron 55.0%
ATAGCCGCACATGCATCACG+AGG + chr8_2:65616169-65616188 None:intergenic 55.0%
ATCTCATCAAAGGGGGCCAG+GGG - chr8_2:65616413-65616432 Msa1262750:CDS 55.0%
! GGGTTTTACGGAAGCTCACC+AGG - chr8_2:65617089-65617108 Msa1262750:five_prime_UTR 55.0%
GGGATGACCAGCAGCAAGCA+GGG + chr8_2:65615999-65616018 None:intergenic 60.0%
AGGGATGACCAGCAGCAAGC+AGG + chr8_2:65616000-65616019 None:intergenic 60.0%
GTTCAAGGCAGCCGGGTATG+AGG - chr8_2:65617212-65617231 Msa1262750:five_prime_UTR 60.0%
GGTGCACTGCACCCCACGAA+AGG - chr8_2:65613781-65613800 Msa1262750:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 65613643 65617509 65613643 ID=Msa1262750;Name=Msa1262750
chr8_2 mRNA 65613643 65617509 65613643 ID=Msa1262750-mRNA-1;Parent=Msa1262750;Name=Msa1262750-mRNA-1;_AED=0.02;_eAED=0.02;_QI=597|1|1|1|0.66|0.75|4|473|399
chr8_2 exon 65613643 65614076 65613643 ID=Msa1262750-mRNA-1:exon:21328;Parent=Msa1262750-mRNA-1
chr8_2 exon 65614170 65614370 65614170 ID=Msa1262750-mRNA-1:exon:21327;Parent=Msa1262750-mRNA-1
chr8_2 exon 65614870 65615004 65614870 ID=Msa1262750-mRNA-1:exon:21326;Parent=Msa1262750-mRNA-1
chr8_2 exon 65616010 65617509 65616010 ID=Msa1262750-mRNA-1:exon:21325;Parent=Msa1262750-mRNA-1
chr8_2 five_prime_UTR 65616913 65617509 65616913 ID=Msa1262750-mRNA-1:five_prime_utr;Parent=Msa1262750-mRNA-1
chr8_2 CDS 65616010 65616912 65616010 ID=Msa1262750-mRNA-1:cds;Parent=Msa1262750-mRNA-1
chr8_2 CDS 65614870 65615004 65614870 ID=Msa1262750-mRNA-1:cds;Parent=Msa1262750-mRNA-1
chr8_2 CDS 65614209 65614370 65614209 ID=Msa1262750-mRNA-1:cds;Parent=Msa1262750-mRNA-1
chr8_2 three_prime_UTR 65614170 65614208 65614170 ID=Msa1262750-mRNA-1:three_prime_utr;Parent=Msa1262750-mRNA-1
chr8_2 three_prime_UTR 65613643 65614076 65613643 ID=Msa1262750-mRNA-1:three_prime_utr;Parent=Msa1262750-mRNA-1
Gene Sequence

>Msa1262750

ATGGGTTGTGTTCATGGTAAATGTTGCTGTGTGAAATCTTCGGATGGCGGCTCTAGAAAACTTGGTTATCATCATAGCCATAGGAAGAACATACATGCTCAAAGAGTATTGAAAAATGTTTCTGTTCCTTCACACAATTTTGTTTTGGAGTATACCTTTCTCACACTGCGAGGTTACTACCCTGATTCGCTGGATAAGCAAAACCAAGATAGTTTTTGCATTAGGACGGAAATTCAAGGTAACCCGAATACCCATTTCTTTGGTGTTTTTGATGGGCATGGTCAATTTGGTAGTCAATGTTCAAACTTTGTTAGAGATAGGTTGGTAGAGAAGTTATCTAACGACCCTGAATTGGTGAAGGATCCTGTTCGAGCTTACAATTCTGCGTTCTCGGCAACAAATCACGAATTGCATACTAGTGACATTGATGATTCTATGAGTGGTACAACGGCTATTACAGTGCTTGTTGTTGGAGACACCCTTTATGTTGCTAATGTCGGTGATTCAAGAGCTGTGATAGCTGTTAAGGGTGGGGATCGGATTATTGCGGAGGACTTGTCCTCCGATCAGACACCATTTCGGAGAGATGAATACGAGAGAGTGAAACTTTGTGGAGCAAGGGTGTTGAGTGTTGATCAAGTGGAAGGGATTAAGGATCCAAATATCCAACACTGGGGTAACGAAGAGAGTTGGGATGGTGATCCTCCGAGATTGTGGTTCCCAAATGGGATGTTTCCTGGAACTGCATTTACAAGGAGTTTAGGGGATAGATTGGCGGAGACAATTGGTGTGGTTGCAACTCCAGAGGTGTCAATAGTTCAGCTTACACCTAATCATCTCTTCTTTATTGTTGCTAGTGATGGCATATTTGAATTCTTGTCAAGCCAAACTGTTGTTGATATGGCAGCAAGATATACAGATCCTCGTGATGCATGTGCGGCTATTGCTGAAGAGTCATATAAACTGTGGTCGGAACTTGTGAATCGAACAGATGATATAACAATTATCATTGTCCAGATTAAAGGACTCTCTAATAATTCAAGCACATCTGGAGTTCAATTAAGTGAGGTCAATGTCGGTACTGCTATGAGAACCAGGACAGGAACTTCTGAGATGTCTACTACCACTGAATTTGATGTTTATCATTCTGTGACGAACAGTTTCTCTGATTCACAATCCTGCCAGTCAAAGATCAGTTGA

Protein sequence

>Msa1262750

MGCVHGKCCCVKSSDGGSRKLGYHHSHRKNIHAQRVLKNVSVPSHNFVLEYTFLTLRGYYPDSLDKQNQDSFCIRTEIQGNPNTHFFGVFDGHGQFGSQCSNFVRDRLVEKLSNDPELVKDPVRAYNSAFSATNHELHTSDIDDSMSGTTAITVLVVGDTLYVANVGDSRAVIAVKGGDRIIAEDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGIKDPNIQHWGNEESWDGDPPRLWFPNGMFPGTAFTRSLGDRLAETIGVVATPEVSIVQLTPNHLFFIVASDGIFEFLSSQTVVDMAARYTDPRDACAAIAEESYKLWSELVNRTDDITIIIVQIKGLSNNSSTSGVQLSEVNVGTAMRTRTGTSEMSTTTEFDVYHSVTNSFSDSQSCQSKIS*