AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1000880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1000880 MtrunA17_Chr6g0487171 99.219 1536 12 0 1 1536 1 1536 0.0 3157
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1000880 AT4G29380.1 68.782 1544 424 11 1 1536 1 1494 0.0 2130
Msa1000880 AT4G29380.2 65.533 1323 398 12 222 1536 1 1273 0.0 1707
Msa1000880 AT1G33770.1 28.638 213 121 10 33 236 147 337 2.31e-12 72.4

Find 389 sgRNAs with CRISPR-Local

Find 689 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTCAATAACTTACTTTA+TGG 0.017100 6_4:+84224804 None:intergenic
TATCCATGGGGCAATTTAAA+AGG 0.198468 6_4:+84226396 None:intergenic
CATGAAACTCGCGCTTTCTT+TGG 0.217749 6_4:+84229019 None:intergenic
TTCTAACATGTCCGAGCTTC+TGG 0.218141 6_4:+84227528 None:intergenic
AACTGAATTGGCCAAATTAA+AGG 0.221582 6_4:+84227030 None:intergenic
TTCTGCATCACTGTCATAAT+TGG 0.226064 6_4:+84225667 None:intergenic
TGTTCCAACTGGTTTGTATC+AGG 0.226968 6_4:-84226245 Msa1000880:CDS
ACTTAGCAAGTCCTTTAATT+TGG 0.228682 6_4:-84227041 Msa1000880:CDS
GCTGAAAAGCAACAGGGTTC+TGG 0.236868 6_4:-84227406 Msa1000880:CDS
TCATCATTCTTCCCGGGGTC+TGG 0.241826 6_4:+84228190 None:intergenic
AAGCTTGCGCTCACTGCTTA+TGG 0.250228 6_4:-84228297 Msa1000880:CDS
GTTCATCACAGTCTAAAATA+TGG 0.259563 6_4:-84227483 Msa1000880:CDS
GCCAAGTATTGCACCTTCTT+TGG 0.266844 6_4:+84226418 None:intergenic
AGAACTGTGGCATTCATCTA+TGG 0.268978 6_4:-84226349 Msa1000880:CDS
CATGATCAGTATGAACTTCT+TGG 0.274313 6_4:-84228954 Msa1000880:CDS
TGTGACCTCTGGAGAACTTT+TGG 0.276856 6_4:-84229054 Msa1000880:CDS
CAAAGCAAACGCCAAATATT+AGG 0.280826 6_4:-84228095 Msa1000880:CDS
GTAAATTACTAAAGTTCATT+TGG 0.282289 6_4:-84224873 Msa1000880:exon
ACTATGCCAGAGTGCTTTCC+AGG 0.282997 6_4:-84229123 Msa1000880:CDS
ACGGAGGATTTCGATGATTA+AGG 0.283282 6_4:-84234091 Msa1000880:CDS
CGGACATCCATCCCTGATTC+TGG 0.284166 6_4:-84226791 Msa1000880:CDS
CGAGGTCAAATTCCAATTCT+TGG 0.285843 6_4:-84226322 Msa1000880:CDS
TGCTAATTACGTCCTCAAAT+TGG 0.288641 6_4:-84230867 Msa1000880:CDS
GATCTTCATCATCAATATAT+AGG 0.292293 6_4:+84228541 None:intergenic
AATGTTGTTGAGAAGTATTC+TGG 0.292840 6_4:-84226467 Msa1000880:CDS
CTAATATTTGGCGTTTGCTT+TGG 0.300313 6_4:+84228096 None:intergenic
ATGATCGAGATGAGCAATTA+AGG 0.306269 6_4:-84227978 Msa1000880:CDS
ACTACCCAAGCTGATTTATC+AGG 0.317965 6_4:-84226830 Msa1000880:CDS
ATGACTCAACAGTCAAGATT+TGG 0.319506 6_4:-84226664 Msa1000880:CDS
AAAACTAGATTATACGTTGA+TGG 0.319863 6_4:+84234234 None:intergenic
TGAGTCTAAATTTAGAGATA+TGG 0.323032 6_4:-84227323 Msa1000880:CDS
GCAGCTGCGCGAATTGCCTT+TGG 0.324724 6_4:+84225010 None:intergenic
TGTTAGAGCCTTAGAATGTT+TGG 0.326974 6_4:-84227839 Msa1000880:CDS
AGAAGCGCTCTCCTAATATT+TGG 0.327877 6_4:+84228084 None:intergenic
CTGAAAAGCAACAGGGTTCT+GGG 0.336621 6_4:-84227405 Msa1000880:CDS
TCCATTACAAATGAATTCTC+TGG 0.337807 6_4:-84227098 Msa1000880:CDS
CCAGGTGGTGATTTATTGAC+TGG 0.337844 6_4:-84225494 Msa1000880:CDS
CGGTGATTCTATTAATCTTT+CGG 0.338186 6_4:-84234121 Msa1000880:CDS
GAACCTCCTCCCCGTCTTCC+TGG 0.338704 6_4:-84225539 Msa1000880:CDS
CGTGGCCTCCAACCAGAATC+AGG 0.340011 6_4:+84226779 None:intergenic
TAGAATAGCCAAACATTCTA+AGG 0.343818 6_4:+84227831 None:intergenic
AATTTACTTCCAAACCTTGA+TGG 0.344298 6_4:+84224889 None:intergenic
GTTGCAATGAAGTTTCTCTT+TGG 0.345255 6_4:-84226058 Msa1000880:CDS
TACGAAACAAAATCTAGTTT+TGG 0.348761 6_4:-84225283 Msa1000880:CDS
TGCCCCTCTAAAGCCATCTA+TGG 0.352138 6_4:-84230056 Msa1000880:CDS
CTATTTATCATCATTCTTCC+CGG 0.353071 6_4:+84228183 None:intergenic
CTTATCAACAGGAGACAAAA+AGG 0.354283 6_4:-84225057 Msa1000880:intron
TATTAGTTTCTCTCGAATCT+TGG 0.356418 6_4:-84224657 Msa1000880:three_prime_UTR
TACGTCGATGGGATCATTAC+AGG 0.359928 6_4:-84225454 Msa1000880:intron
ATCTTGCGGATTCCAATATC+TGG 0.363639 6_4:+84229402 None:intergenic
ATTTGTGGACCAAACCTAAA+AGG 0.363752 6_4:-84225325 Msa1000880:CDS
CGAAGGAAAGGGCGTATAAC+AGG 0.363774 6_4:+84227646 None:intergenic
TGCTGCTAGTAGTGAGAGCC+TGG 0.364026 6_4:-84227698 Msa1000880:CDS
TACGCCTTGTCCCTAGCATC+AGG 0.366208 6_4:-84226272 Msa1000880:CDS
TGAAGGATTGGTTCTTGTTA+AGG 0.367435 6_4:-84234157 Msa1000880:CDS
TTCTCTGAAGCAAGAGATAC+AGG 0.372747 6_4:+84227616 None:intergenic
ACAGTCTAAAATATGGGAAA+TGG 0.373545 6_4:-84227476 Msa1000880:CDS
TAAATTACTAAAGTTCATTT+GGG 0.374392 6_4:-84224872 Msa1000880:three_prime_UTR
GTCCGATATGCCTTGGGCCT+TGG 0.374558 6_4:-84225642 Msa1000880:CDS
AGTTGGCTTACTTGAAGGTT+TGG 0.374763 6_4:+84225619 None:intergenic
GACAAAAGCTACTGCATTTG+TGG 0.380454 6_4:-84225340 Msa1000880:CDS
CATCATTCTTCCCGGGGTCT+GGG 0.381427 6_4:+84228191 None:intergenic
GGACTATCTTCTAATAATAA+AGG 0.385809 6_4:-84226878 Msa1000880:CDS
GTGTGCATTTGAAATATGTT+TGG 0.385987 6_4:+84234383 None:intergenic
CAAAGAAAGCGCGAGTTTCA+TGG 0.387216 6_4:-84229018 Msa1000880:CDS
CAGGGGCGTAATTACACTTT+GGG 0.387681 6_4:-84226216 Msa1000880:CDS
TATTGTGTTATCCTAGTGAA+TGG 0.390296 6_4:-84227747 Msa1000880:CDS
AGGAGGAAACTCCCGCACTA+TGG 0.390750 6_4:+84228422 None:intergenic
GAATACTTCCAAGAGTTTAC+AGG 0.390946 6_4:+84226176 None:intergenic
ATAGATGAATGCCACAGTTC+TGG 0.392359 6_4:+84226351 None:intergenic
CTATGGATTTATTTGCTGTT+GGG 0.393028 6_4:-84230039 Msa1000880:intron
TATTAGGAGAGCGCTTCTTC+AGG 0.393075 6_4:-84228079 Msa1000880:CDS
CTACAGCTGAAAGCAGATAT+TGG 0.393719 6_4:+84224622 None:intergenic
CCCAGAGAATTCATTTGTAA+TGG 0.394515 6_4:+84227097 None:intergenic
ATCTTCATCATCAATATATA+GGG 0.396562 6_4:+84228542 None:intergenic
TTTGAAATATGTTTGGGAAT+TGG 0.396775 6_4:+84234390 None:intergenic
GTTGTTCAAGAACTTGTTAT+GGG 0.398737 6_4:-84228120 Msa1000880:CDS
CATCAGGGCCTTGTTCCAAC+TGG 0.399695 6_4:-84226256 Msa1000880:CDS
GGCCTGATGATTTGTCTTGA+GGG 0.403443 6_4:-84224769 Msa1000880:three_prime_UTR
GGTTGTTCAAGAACTTGTTA+TGG 0.404518 6_4:-84228121 Msa1000880:CDS
AATTGTTCGTTGCGCTGCTT+TGG 0.405253 6_4:-84228466 Msa1000880:CDS
CAATAAATCACCACCTGGTA+AGG 0.407242 6_4:+84225499 None:intergenic
TTAGTTTCGTTGAGAAGAAA+TGG 0.408112 6_4:-84231221 Msa1000880:CDS
GTTGCTATCATTATGCATAA+AGG 0.408394 6_4:+84227297 None:intergenic
CACTAGGCCCCTTGTTTATG+TGG 0.408904 6_4:-84226087 Msa1000880:CDS
GAAAGCATTGCAATCACATA+TGG 0.411010 6_4:+84228501 None:intergenic
ATTTCCTCAGCTGCAGAAGC+TGG 0.411788 6_4:+84228154 None:intergenic
TTCTGCTGAAATGTATCTAA+AGG 0.412239 6_4:-84229340 Msa1000880:CDS
TGTACATAATTAGCAATTCC+TGG 0.412970 6_4:-84224843 Msa1000880:three_prime_UTR
GAGCTGGGCTGAAAAGCAAC+AGG 0.414559 6_4:-84227413 Msa1000880:CDS
TTAGTTCATCTGCAATGCCT+TGG 0.415107 6_4:-84227072 Msa1000880:CDS
TCTATGGATTTATTTGCTGT+TGG 0.415411 6_4:-84230040 Msa1000880:CDS
GTTGAAGACAGAGAAGCATT+TGG 0.416553 6_4:+84226110 None:intergenic
TTTGAAGCAATATCCTCTTC+CGG 0.417289 6_4:+84227791 None:intergenic
TCACATCTCATAGTATCCTT+TGG 0.417482 6_4:+84228663 None:intergenic
GTCCTCTCCATTCTGATATG+AGG 0.420610 6_4:-84229251 Msa1000880:CDS
GCTGGTCCTCAGCAAGGAAT+AGG 0.420817 6_4:-84228882 Msa1000880:CDS
CATAATGCTGTTATTATCCA+TGG 0.422172 6_4:+84226382 None:intergenic
TAGTTCATCTGCAATGCCTT+GGG 0.422255 6_4:-84227071 Msa1000880:CDS
GATAGTCAGTCGGATACATT+TGG 0.423026 6_4:-84228705 Msa1000880:CDS
TGACTCAACAGTCAAGATTT+GGG 0.424025 6_4:-84226663 Msa1000880:CDS
TTCTTGTACCTGTAAACTCT+TGG 0.424071 6_4:-84226184 Msa1000880:CDS
CGCACGTTACTTCCCTTACC+AGG 0.424660 6_4:-84225512 Msa1000880:CDS
CAATATCTGCTTTCAGCTGT+AGG 0.427310 6_4:-84224621 Msa1000880:three_prime_UTR
TGAGAAGTTGGCTTACTTGA+AGG 0.429375 6_4:+84225614 None:intergenic
TGTGCATTTGAAATATGTTT+GGG 0.431772 6_4:+84234384 None:intergenic
CTTTGGTGATGGAACTGAAT+TGG 0.432583 6_4:+84227018 None:intergenic
AGGAAGAAGACTCTGTTATC+TGG 0.432695 6_4:-84230758 Msa1000880:CDS
GTCTGGGTGGATGATGTAAA+TGG 0.433578 6_4:+84228207 None:intergenic
ACAGCAAATAAATCCATAGA+TGG 0.435795 6_4:+84230043 None:intergenic
TTATGTGTAGCAATGCTTCC+AGG 0.436550 6_4:-84226569 Msa1000880:CDS
TAGATGAATGCCACAGTTCT+GGG 0.437167 6_4:+84226352 None:intergenic
TCATTTGTTTAAGTATCTCC+TGG 0.437177 6_4:+84229105 None:intergenic
AAATCCATAGATGGCTTTAG+AGG 0.437513 6_4:+84230052 None:intergenic
ACACTTTCCTCAGGATCATC+AGG 0.438546 6_4:+84228348 None:intergenic
AATAGAATCGCGATGGCAAC+CGG 0.439173 6_4:+84224973 None:intergenic
GTATTGATCATCCTCATGTT+TGG 0.439994 6_4:-84234056 Msa1000880:CDS
GATCATATCTCTAGAGGTCT+AGG 0.441679 6_4:-84226491 Msa1000880:CDS
GATGAAATTCAAACCTGAAA+AGG 0.445000 6_4:+84234033 None:intergenic
TTGGAGGCCACGTGGGGTGT+TGG 0.446400 6_4:-84226768 Msa1000880:CDS
GGTGTTGGTTGCACACCTCC+AGG 0.449380 6_4:-84226753 Msa1000880:CDS
GGCAGCTGTACTCTTGTTGA+AGG 0.449481 6_4:-84228571 Msa1000880:CDS
GGTTTGTATCAGGGTCGTCC+AGG 0.449620 6_4:-84226235 Msa1000880:CDS
ATCCGACTGACTATCATATT+CGG 0.451086 6_4:+84228713 None:intergenic
GACAAGGCGTAGCCCTCGTC+AGG 0.452628 6_4:+84226284 None:intergenic
TCCACACTGAAGGAGTATAA+AGG 0.452923 6_4:+84227160 None:intergenic
CTTAAAGCTTGCTCAATGTA+AGG 0.454449 6_4:+84227883 None:intergenic
ACGAACAATTGCTGCTGGAT+CGG 0.455161 6_4:+84228479 None:intergenic
ATTCCTTGCTGAGGACCAGC+TGG 0.455754 6_4:+84228885 None:intergenic
TTCATCACAGTCTAAAATAT+GGG 0.456196 6_4:-84227482 Msa1000880:CDS
TGGAACAAGGCCCTGATGCT+AGG 0.458577 6_4:+84226261 None:intergenic
GCTCAACAAATTGTTGGAAC+TGG 0.458594 6_4:-84227382 Msa1000880:CDS
TGAAAATGGAGGGGAGATGC+AGG 0.459107 6_4:-84230089 Msa1000880:CDS
GAGTCTAAATTTAGAGATAT+GGG 0.459652 6_4:-84227322 Msa1000880:CDS
ATATTTACATGATACGATCA+AGG 0.460940 6_4:+84224690 None:intergenic
CTTGGATCTGACTGAGAAGT+TGG 0.463106 6_4:+84225602 None:intergenic
TCTGGGGCTCAACAAATTGT+TGG 0.463389 6_4:-84227388 Msa1000880:CDS
ACCAAAGAAGGTGCAATACT+TGG 0.463919 6_4:-84226419 Msa1000880:CDS
AGAGTACAGCTGCCCTCCTT+AGG 0.463977 6_4:+84228580 None:intergenic
GCCCCTTGTTTATGTGGCTG+CGG 0.464060 6_4:-84226081 Msa1000880:CDS
CAGAAATGTCCGATATGCCT+TGG 0.464220 6_4:-84225649 Msa1000880:CDS
TTAGTCGATCATGCAAATTA+TGG 0.464265 6_4:+84231259 None:intergenic
TCCATAAAGTAAGTTATTGA+AGG 0.465595 6_4:-84224805 Msa1000880:three_prime_UTR
GAGATGGGGCCATCAAGGTT+TGG 0.469428 6_4:-84224898 Msa1000880:CDS
CCAGGGGCGTAATTACACTT+TGG 0.470525 6_4:-84226217 Msa1000880:CDS
ATCCTTTGGTAATGGTAGAA+AGG 0.470869 6_4:+84228677 None:intergenic
TAAAACAGAGCCACGAGAAG+GGG 0.472703 6_4:-84231062 Msa1000880:CDS
ATTGAAGGTGTTGTCTTGGT+TGG 0.472854 6_4:-84224790 Msa1000880:three_prime_UTR
GTTCCAACTGGTTTGTATCA+GGG 0.473177 6_4:-84226244 Msa1000880:CDS
TCCTTTGGTAATGGTAGAAA+GGG 0.473287 6_4:+84228678 None:intergenic
CAACTTGACATTGCGTATGC+AGG 0.475429 6_4:+84228608 None:intergenic
TAGAAAGACAGAGAAAGATA+TGG 0.477066 6_4:-84227510 Msa1000880:CDS
CTTACTTGAAGGTTTGGCCA+AGG 0.479441 6_4:+84225625 None:intergenic
AAAACCTCCTGTCTCAAGAC+AGG 0.479624 6_4:-84227575 Msa1000880:CDS
CAAATAGTGGTTGGCCCTCA+AGG 0.480696 6_4:+84229609 None:intergenic
GGAAGTAACGTGCGAATACC+AGG 0.484632 6_4:+84225521 None:intergenic
CAGGTGGTGATTTATTGACT+GGG 0.485149 6_4:-84225493 Msa1000880:CDS
AGTTGAGACAGTTCAAATAG+TGG 0.485552 6_4:+84229596 None:intergenic
AATAATAATAAGAGTCCAGC+TGG 0.485791 6_4:-84228900 Msa1000880:CDS
GCGCAACGAACAATTGCTGC+TGG 0.488076 6_4:+84228474 None:intergenic
AGTTGGACTCATTAAAGAGC+TGG 0.488893 6_4:-84227429 Msa1000880:CDS
TGCCCTCAAGACAAATCATC+AGG 0.489138 6_4:+84224767 None:intergenic
TACTCTCAAGTGGTAGAGAT+GGG 0.491239 6_4:-84224913 Msa1000880:CDS
TTATACGCCCTTTCCTTCGT+AGG 0.491421 6_4:-84227642 Msa1000880:CDS
GATTATGTGTGGACTATTTG+CGG 0.493341 6_4:+84234323 None:intergenic
GGAACTGGCATCCAACAGCC+AGG 0.495267 6_4:-84227367 Msa1000880:CDS
CACTTGAGAGTAGAAGTCTC+TGG 0.495465 6_4:+84224924 None:intergenic
CCCCTTGTTTATGTGGCTGC+GGG 0.497055 6_4:-84226080 Msa1000880:CDS
ACTATCACTTGTGCTGAACC+TGG 0.497595 6_4:+84226551 None:intergenic
TATTTATCATCATTCTTCCC+GGG 0.499616 6_4:+84228184 None:intergenic
TGGGTGCAGATACCAGATAT+TGG 0.499956 6_4:-84229414 Msa1000880:intron
TCTGTTGATCATATCTCTAG+AGG 0.500471 6_4:-84226497 Msa1000880:CDS
AAATCCTGATAAATCAGCTT+GGG 0.501210 6_4:+84226826 None:intergenic
CTCATAGTATCCTTTGGTAA+TGG 0.501917 6_4:+84228669 None:intergenic
CTCATCTCGATCATTTAAGA+AGG 0.502367 6_4:+84227987 None:intergenic
AGTGTGGACAGGAGAGGAAT+GGG 0.503355 6_4:-84227145 Msa1000880:CDS
ATTGTGTTATCCTAGTGAAT+GGG 0.506500 6_4:-84227746 Msa1000880:CDS
CATAATGATAGCAACATGTT+GGG 0.506684 6_4:-84227289 Msa1000880:CDS
TGGCCTGATGATTTGTCTTG+AGG 0.507253 6_4:-84224770 Msa1000880:three_prime_UTR
CCATCCCTGATTCTGGTTGG+AGG 0.510475 6_4:-84226784 Msa1000880:CDS
ATAAGTTAGCTTTGACCTGA+AGG 0.511488 6_4:+84226613 None:intergenic
GCATAATGATAGCAACATGT+TGG 0.511936 6_4:-84227290 Msa1000880:CDS
GTTTGTATCAGGGTCGTCCA+GGG 0.512093 6_4:-84226234 Msa1000880:CDS
TTCTCAACGAAACTAAGAAA+AGG 0.512248 6_4:+84231228 None:intergenic
GATGATGCAGGTGTGACCTC+TGG 0.513874 6_4:-84229065 Msa1000880:CDS
AGACAGCTGAACGATGCTCC+TGG 0.514058 6_4:+84226735 None:intergenic
TTTAAGAAGGCGGGAAGGAT+AGG 0.516327 6_4:+84228000 None:intergenic
ATTCTGGTTGGAGGCCACGT+GGG 0.516345 6_4:-84226775 Msa1000880:CDS
TATCAGATAGCCCTGGCTGT+TGG 0.516430 6_4:+84227356 None:intergenic
CGTGCGAATACCAGGAAGAC+GGG 0.516743 6_4:+84225529 None:intergenic
ATAACGCATGGCTTCCCTCC+AGG 0.518260 6_4:+84226588 None:intergenic
TCCTCTCCTGTCCACACTGA+AGG 0.519010 6_4:+84227150 None:intergenic
TTGCGATTAACATTTCGTCT+TGG 0.519920 6_4:+84225584 None:intergenic
TCAATAAGCTTGAGTGAGGC+AGG 0.520118 6_4:-84228261 Msa1000880:CDS
TAGAAAACCTGTCTTGAGAC+AGG 0.520454 6_4:+84227568 None:intergenic
ACAACGTGATCCGCAGTTCT+CGG 0.521046 6_4:-84227266 Msa1000880:CDS
AATCTTGACTGTTGAGTCAT+CGG 0.521532 6_4:+84226667 None:intergenic
GACAGAGAAGCATTTGGAGG+AGG 0.521628 6_4:+84226116 None:intergenic
CCATTACAAATGAATTCTCT+GGG 0.522039 6_4:-84227097 Msa1000880:CDS
TGTGGGACAAAGAAGTGTAG+AGG 0.523366 6_4:-84227917 Msa1000880:CDS
ACTATATCGAATGCATTTCG+AGG 0.523879 6_4:-84228792 Msa1000880:CDS
CAGTGTGGACAGGAGAGGAA+TGG 0.523929 6_4:-84227146 Msa1000880:CDS
TATACTCCTTCAGTGTGGAC+AGG 0.524183 6_4:-84227156 Msa1000880:CDS
AAAATGGGTTCTTCCGGAAG+AGG 0.524474 6_4:-84227804 Msa1000880:CDS
GGTTCAGCACAAGTGATAGT+TGG 0.525339 6_4:-84226548 Msa1000880:CDS
GAAATCCTGATAAATCAGCT+TGG 0.526887 6_4:+84226825 None:intergenic
TCAGCAGAAAATCGAGACTC+TGG 0.527413 6_4:+84229354 None:intergenic
GGCCAAGGCCCAAGGCATAT+CGG 0.527916 6_4:+84225640 None:intergenic
AGTTATTGAAGGTGTTGTCT+TGG 0.528446 6_4:-84224794 Msa1000880:three_prime_UTR
GTGATAGTTGGAGCATCTGA+TGG 0.528648 6_4:-84226536 Msa1000880:CDS
GGAGGAAACTCCCGCACTAT+GGG 0.530973 6_4:+84228423 None:intergenic
CTACTCTCAAGTGGTAGAGA+TGG 0.531681 6_4:-84224914 Msa1000880:CDS
TAGTGAGAGCCTGGGTGCAG+TGG 0.533594 6_4:-84227689 Msa1000880:CDS
AGAAATGTCCGATATGCCTT+GGG 0.533977 6_4:-84225648 Msa1000880:CDS
ATAGTTTGAAGCAGCTCACC+AGG 0.534125 6_4:+84228810 None:intergenic
CCAAAGTGTAATTACGCCCC+TGG 0.534817 6_4:+84226217 None:intergenic
AATCCATAGATGGCTTTAGA+GGG 0.536207 6_4:+84230053 None:intergenic
TACATCAATTTCACTAGAAG+AGG 0.536568 6_4:-84226855 Msa1000880:CDS
ATAATGCTGTTATTATCCAT+GGG 0.537303 6_4:+84226383 None:intergenic
AGAGGTCACACCTGCATCAT+CGG 0.537985 6_4:+84229067 None:intergenic
GCTGCTGCCACTGATTCCGC+CGG 0.537988 6_4:-84224992 Msa1000880:CDS
TGGTAGAGATGGGGCCATCA+AGG 0.539125 6_4:-84224903 Msa1000880:CDS
AGTCCACACATAATCTCGAT+GGG 0.540311 6_4:-84234315 Msa1000880:exon
ACAGGTTGCCTACGAAGGAA+AGG 0.542403 6_4:+84227634 None:intergenic
GGAAATATCTTTGCATCACT+AGG 0.543013 6_4:+84228402 None:intergenic
TCTCGATCATTTAAGAAGGC+GGG 0.543606 6_4:+84227991 None:intergenic
TACATCATCCACCCAGACCC+CGG 0.543850 6_4:-84228202 Msa1000880:CDS
GGTGTCAGCTTGGTTGCAAG+AGG 0.543856 6_4:+84225031 None:intergenic
AACTTCTTGCGTATCGCAGA+GGG 0.544928 6_4:-84229577 Msa1000880:CDS
GGTACATGAACCAGATCCTA+AGG 0.545462 6_4:-84226942 Msa1000880:CDS
ATGTCAAGTTGCCTCACCTA+AGG 0.545488 6_4:-84228596 Msa1000880:CDS
GCATTTCCTATTCCTTGCTG+AGG 0.545696 6_4:+84228876 None:intergenic
AATTGCCTTTGGTGTCAGCT+TGG 0.545967 6_4:+84225021 None:intergenic
GAAGACAGAGAAGCATTTGG+AGG 0.546432 6_4:+84226113 None:intergenic
TCAAGTTGCCTCACCTAAGG+AGG 0.546995 6_4:-84228593 Msa1000880:CDS
GAAGGTTTGGCCAAGGCCCA+AGG 0.547022 6_4:+84225632 None:intergenic
GTGTAAGCACGATGAAGGAT+TGG 0.548974 6_4:-84234169 Msa1000880:CDS
ATTCAGTGTAAGCACGATGA+AGG 0.550505 6_4:-84234174 Msa1000880:CDS
CATATCCTCACACTTTCCTC+AGG 0.552109 6_4:+84228339 None:intergenic
ATCGTCATACGGTATGTATG+TGG 0.552186 6_4:+84230813 None:intergenic
TCCTCTCCATTCTGATATGA+GGG 0.552995 6_4:-84229250 Msa1000880:intron
TTCCCCATCGAGATTATGTG+TGG 0.556567 6_4:+84234312 None:intergenic
GAACTGTGGCATTCATCTAT+GGG 0.556819 6_4:-84226348 Msa1000880:CDS
GGAACAAGGCCCTGATGCTA+GGG 0.556901 6_4:+84226262 None:intergenic
GGACCAAACCTAAAAGGAGT+TGG 0.557868 6_4:-84225319 Msa1000880:CDS
ATGTCCAGCTTCTGCAGCTG+AGG 0.559074 6_4:-84228158 Msa1000880:CDS
CTTCTCTGTCTTCAACCACT+AGG 0.560663 6_4:-84226103 Msa1000880:CDS
AAACAGTCATCCGATGATGC+AGG 0.561024 6_4:-84229077 Msa1000880:CDS
GTAAAACAGAGCCACGAGAA+GGG 0.562102 6_4:-84231063 Msa1000880:CDS
CATCCATCCCTGATTCTGGT+TGG 0.562681 6_4:-84226787 Msa1000880:CDS
TTTCGTTGAGAAGAAATGGT+TGG 0.563110 6_4:-84231217 Msa1000880:CDS
TATTTACATGATACGATCAA+GGG 0.565171 6_4:+84224691 None:intergenic
GTATCTCCTGGAAAGCACTC+TGG 0.566816 6_4:+84229117 None:intergenic
AAATTAAAGGACTTGCTAAG+TGG 0.567374 6_4:+84227043 None:intergenic
TCGCGATTCTATTGTGTCTG+TGG 0.567465 6_4:-84224963 Msa1000880:CDS
TGACATTCTGCCCATAGTGC+GGG 0.567791 6_4:-84228433 Msa1000880:CDS
TTAATCTTTCGGAGTATGAA+CGG 0.567893 6_4:-84234110 Msa1000880:CDS
TGCAACCAAGCTGACACCAA+AGG 0.569821 6_4:-84225026 Msa1000880:CDS
CTTGGAGAACTCCAGAAGCT+CGG 0.570042 6_4:-84227539 Msa1000880:CDS
TACTATGAGATGTGAAGGCA+TGG 0.570884 6_4:-84228655 Msa1000880:CDS
GAGACAGTTCAAATAGTGGT+TGG 0.573964 6_4:+84229600 None:intergenic
TAGTCCACACATAATCTCGA+TGG 0.574572 6_4:-84234316 Msa1000880:exon
CAGGTTGCCTACGAAGGAAA+GGG 0.575396 6_4:+84227635 None:intergenic
TATTGCTGATGTCACAAAGA+AGG 0.576545 6_4:-84226444 Msa1000880:CDS
CATATACCCTCATATCAGAA+TGG 0.576645 6_4:+84229244 None:intergenic
TGAAAAGCAACAGGGTTCTG+GGG 0.578532 6_4:-84227404 Msa1000880:CDS
AATAAATCACCACCTGGTAA+GGG 0.579357 6_4:+84225500 None:intergenic
ACATCATCCACCCAGACCCC+GGG 0.579862 6_4:-84228201 Msa1000880:CDS
AACCCGCAGCCACATAAACA+AGG 0.580342 6_4:+84226078 None:intergenic
AGAGAATGCTAGCTGCCACC+AGG 0.581685 6_4:-84226030 Msa1000880:intron
ATCTCGATCATTTAAGAAGG+CGG 0.582307 6_4:+84227990 None:intergenic
GAGAAGCATTTGGAGGAGGA+AGG 0.583269 6_4:+84226120 None:intergenic
CGACCCTGATACAAACCAGT+TGG 0.584028 6_4:+84226241 None:intergenic
ACGCCTTGTCCCTAGCATCA+GGG 0.585281 6_4:-84226271 Msa1000880:CDS
CTGTTCGCACCACTAAAAGT+TGG 0.586245 6_4:+84227214 None:intergenic
ATGGCAACCGGCGGAATCAG+TGG 0.586327 6_4:+84224985 None:intergenic
AAGGATACTATGAGATGTGA+AGG 0.586946 6_4:-84228660 Msa1000880:CDS
GATTCTGGTTGGAGGCCACG+TGG 0.587663 6_4:-84226776 Msa1000880:CDS
AATGGAGAATCAGAAGCTGC+AGG 0.590111 6_4:+84227115 None:intergenic
AGTCTAAATTTAGAGATATG+GGG 0.591571 6_4:-84227321 Msa1000880:CDS
AAATCAGATGGATCGTCATA+CGG 0.592053 6_4:+84230802 None:intergenic
ACATATGACAAGCCATCTGA+AGG 0.593523 6_4:-84227187 Msa1000880:CDS
GTTGGACTCATTAAAGAGCT+GGG 0.594944 6_4:-84227428 Msa1000880:CDS
TTCTGGTTGGAGGCCACGTG+GGG 0.595661 6_4:-84226774 Msa1000880:CDS
GTCAAAGCTAACTTATCACC+TGG 0.595835 6_4:-84226606 Msa1000880:CDS
GCCCTTTCTACCATTACCAA+AGG 0.596003 6_4:-84228679 Msa1000880:CDS
ATTTATCATCATTCTTCCCG+GGG 0.596131 6_4:+84228185 None:intergenic
CATTCTTCCCGGGGTCTGGG+TGG 0.597763 6_4:+84228194 None:intergenic
ACAAAGAAGGATACCAAAGA+AGG 0.599592 6_4:-84226431 Msa1000880:CDS
ATACCAGGAAGACGGGGAGG+AGG 0.599624 6_4:+84225536 None:intergenic
CAGAGACTTCTACTCTCAAG+TGG 0.600869 6_4:-84224923 Msa1000880:CDS
CACATAAACAAGGGGCCTAG+TGG 0.600997 6_4:+84226088 None:intergenic
TATAAAGGTATGCCTTCAGA+TGG 0.601663 6_4:+84227175 None:intergenic
TGTAAAACAGAGCCACGAGA+AGG 0.602230 6_4:-84231064 Msa1000880:CDS
GTGATATTAATAGCTTACTG+AGG 0.602685 6_4:-84228932 Msa1000880:CDS
AGCAAGGTAAAGCCAATTTG+AGG 0.602848 6_4:+84230855 None:intergenic
GATCTTCGTACCCATTCACT+AGG 0.603575 6_4:+84227736 None:intergenic
GAGATACAGGTTGCCTACGA+AGG 0.603831 6_4:+84227629 None:intergenic
TCGTCATACGGTATGTATGT+GGG 0.605383 6_4:+84230814 None:intergenic
TCAGGAAGCATAGAAAGCAT+AGG 0.606087 6_4:+84228366 None:intergenic
CTGATTTAAAGATACGTCGA+TGG 0.606640 6_4:-84225466 Msa1000880:CDS
TTGTCACTATCAGATAGCCC+TGG 0.606906 6_4:+84227349 None:intergenic
ACGTTGATGGTAACTCGTGT+AGG 0.607943 6_4:+84234247 None:intergenic
GTGGCCTCCAACCAGAATCA+GGG 0.608712 6_4:+84226780 None:intergenic
CCAGTCAATAAATCACCACC+TGG 0.612997 6_4:+84225494 None:intergenic
ACCTGAAAAGGCCAAACATG+AGG 0.613181 6_4:+84234045 None:intergenic
GATACAAACCAGTTGGAACA+AGG 0.614163 6_4:+84226248 None:intergenic
CGAAGGAAAAGAGAGGACAT+AGG 0.614178 6_4:-84228990 Msa1000880:CDS
TGATATTAATAGCTTACTGA+GGG 0.614256 6_4:-84228931 Msa1000880:CDS
TTGAAAGAAGTTCTTGGACG+CGG 0.614994 6_4:-84234213 Msa1000880:CDS
CCCGCAGCCACATAAACAAG+GGG 0.615056 6_4:+84226080 None:intergenic
TATGCTTCCTGATGATCCTG+AGG 0.615595 6_4:-84228355 Msa1000880:CDS
ACCCGCAGCCACATAAACAA+GGG 0.616216 6_4:+84226079 None:intergenic
GCTGCTAGTAGTGAGAGCCT+GGG 0.617575 6_4:-84227697 Msa1000880:CDS
AAAAGAGAGGACATAGGCAA+AGG 0.617802 6_4:-84228984 Msa1000880:CDS
GTGGCAAACTCAGTTCATCA+AGG 0.618389 6_4:+84228235 None:intergenic
AGGCCCTGATGCTAGGGACA+AGG 0.618404 6_4:+84226268 None:intergenic
AGTCCAGCTGGTCCTCAGCA+AGG 0.620870 6_4:-84228888 Msa1000880:CDS
TGAAAGAAGCAAAGTCAGCA+AGG 0.621874 6_4:+84230839 None:intergenic
AATATCTTTGCATCACTAGG+AGG 0.624183 6_4:+84228405 None:intergenic
CTCTTCCAAAAGTTCTCCAG+AGG 0.624820 6_4:+84229049 None:intergenic
TGATTTAAAGATACGTCGAT+GGG 0.625024 6_4:-84225465 Msa1000880:CDS
TCCTTCAGTGTGGACAGGAG+AGG 0.628978 6_4:-84227151 Msa1000880:CDS
GTCTAAATTTAGAGATATGG+GGG 0.631163 6_4:-84227320 Msa1000880:CDS
GGACAGTTCTACTAGCTACC+AGG 0.631927 6_4:+84224825 None:intergenic
ACTCTGTTATCTGGCACCTG+AGG 0.633407 6_4:-84230749 Msa1000880:intron
GATGATGTAAATGGCTTCTG+TGG 0.634236 6_4:+84228216 None:intergenic
CCTCCAACCAGAATCAGGGA+TGG 0.638333 6_4:+84226784 None:intergenic
AGGATAACACAATAAAGCAA+AGG 0.639110 6_4:+84227756 None:intergenic
GTCCGAATATGATAGTCAGT+CGG 0.639328 6_4:-84228715 Msa1000880:CDS
ATAGGTAGGGAATACAACTC+CGG 0.639357 6_4:+84229311 None:intergenic
CAACTTCTTGCGTATCGCAG+AGG 0.641712 6_4:-84229578 Msa1000880:CDS
AGGTGGTGATTTATTGACTG+GGG 0.644637 6_4:-84225492 Msa1000880:CDS
AATGGAGAGGACTCCAGCAA+CGG 0.646565 6_4:+84229262 None:intergenic
TTGCTAAGTGGATTAACCCA+AGG 0.647000 6_4:+84227055 None:intergenic
GTGCGAATACCAGGAAGACG+GGG 0.647039 6_4:+84225530 None:intergenic
GTGACATTCTGCCCATAGTG+CGG 0.647435 6_4:-84228434 Msa1000880:CDS
ACGTGCGAATACCAGGAAGA+CGG 0.654575 6_4:+84225528 None:intergenic
GTACGAACAGGTACTGAGGA+CGG 0.654777 6_4:-84225690 Msa1000880:intron
AACGACGCAAGTGTCAGCGT+CGG 0.656295 6_4:-84234277 Msa1000880:CDS
CAAGTTGCCTCACCTAAGGA+GGG 0.658157 6_4:-84228592 Msa1000880:CDS
AAGCTAACTTATCACCTGGA+GGG 0.659318 6_4:-84226602 Msa1000880:CDS
GTTAAAAGCTACTCCTGACG+AGG 0.661234 6_4:-84226297 Msa1000880:CDS
AAAGCTAACTTATCACCTGG+AGG 0.662204 6_4:-84226603 Msa1000880:CDS
ATCCATAGATGGCTTTAGAG+GGG 0.663630 6_4:+84230054 None:intergenic
GCTGAGGAAATCAATTGCAG+AGG 0.663730 6_4:-84228142 Msa1000880:CDS
TTTGTATCAGGGTCGTCCAG+GGG 0.664588 6_4:-84226233 Msa1000880:CDS
ACAGCTGCCCTCCTTAGGTG+AGG 0.665238 6_4:+84228585 None:intergenic
AAAACAGAGCCACGAGAAGG+GGG 0.666365 6_4:-84231061 Msa1000880:CDS
AGAGCGCTTCTTCAGGACAT+CGG 0.667209 6_4:-84228072 Msa1000880:CDS
GCATTGCTACACATAACGCA+TGG 0.668246 6_4:+84226576 None:intergenic
GATCATTTAAGAAGGCGGGA+AGG 0.668715 6_4:+84227995 None:intergenic
ACCTTTATACTCCTTCAGTG+TGG 0.669124 6_4:-84227161 Msa1000880:CDS
TCATGTGCTGAATCATCTTG+CGG 0.669479 6_4:+84229388 None:intergenic
GGTGGTGATTTATTGACTGG+GGG 0.670049 6_4:-84225491 Msa1000880:CDS
ACACTCAATAAGCTTGAGTG+AGG 0.671057 6_4:-84228265 Msa1000880:CDS
GATCTGGTTCATGTACCACT+CGG 0.671167 6_4:+84226948 None:intergenic
ATGTATAGCACCCAGAACTG+TGG 0.671487 6_4:-84226362 Msa1000880:CDS
CATATGAATCCACTGCACCC+AGG 0.672096 6_4:+84227680 None:intergenic
CAGACACAATAGAATCGCGA+TGG 0.673157 6_4:+84224966 None:intergenic
TCGAGATGAGCAATTAAGGA+CGG 0.673367 6_4:-84227974 Msa1000880:CDS
GAACTGGCATCCAACAGCCA+GGG 0.673489 6_4:-84227366 Msa1000880:CDS
TCTTGTACGAACAGGTACTG+AGG 0.675188 6_4:-84225694 Msa1000880:intron
ATGTATCTAAAGGAATACGC+CGG 0.676608 6_4:-84229330 Msa1000880:CDS
AAATGGAGGGGAGATGCAGG+TGG 0.677641 6_4:-84230086 Msa1000880:CDS
ACTCTCAAGTGGTAGAGATG+GGG 0.678113 6_4:-84224912 Msa1000880:CDS
ATCTTTCGGAGTATGAACGG+AGG 0.678229 6_4:-84234107 Msa1000880:CDS
AAAACCTGTCTTGAGACAGG+AGG 0.678865 6_4:+84227571 None:intergenic
AATAGCACATTTCAAGACGT+CGG 0.681270 6_4:-84226899 Msa1000880:CDS
TACTAAACAGTTCCACCGAG+TGG 0.682037 6_4:-84226963 Msa1000880:CDS
CTGGTTCATGTACCACTCGG+TGG 0.683309 6_4:+84226951 None:intergenic
TGTGCAACCAACACCCCACG+TGG 0.687534 6_4:+84226761 None:intergenic
AGCTGGGCTGAAAAGCAACA+GGG 0.689060 6_4:-84227412 Msa1000880:CDS
GCATTCATCTATGGGATACG+AGG 0.690522 6_4:-84226340 Msa1000880:CDS
TAATGCTGTTATTATCCATG+GGG 0.690611 6_4:+84226384 None:intergenic
GGACTCACGAAGGAAAAGAG+AGG 0.692718 6_4:-84228997 Msa1000880:CDS
AGAATCGCGATGGCAACCGG+CGG 0.693029 6_4:+84224976 None:intergenic
ACGTTACTTCCCTTACCAGG+TGG 0.693744 6_4:-84225509 Msa1000880:CDS
CGAATACCAGGAAGACGGGG+AGG 0.694086 6_4:+84225533 None:intergenic
GGAGAATCAGAAGCTGCAGG+AGG 0.694299 6_4:+84227118 None:intergenic
ACCCTCATATCAGAATGGAG+AGG 0.698946 6_4:+84229249 None:intergenic
GTTAAGGTTTATTTCAAACG+CGG 0.704009 6_4:-84234141 Msa1000880:CDS
TTAAAAGCTACTCCTGACGA+GGG 0.704665 6_4:-84226296 Msa1000880:CDS
CAGCTGAACGATGCTCCTGG+AGG 0.706599 6_4:+84226738 None:intergenic
AAGGGCGTATAACAGGAGCA+AGG 0.709055 6_4:+84227653 None:intergenic
TGTAACTTCTCCGAGAACTG+CGG 0.709396 6_4:+84227256 None:intergenic
CGAGTTTCATGGACTCACGA+AGG 0.717237 6_4:-84229007 Msa1000880:CDS
GTCCACACATAATCTCGATG+GGG 0.720211 6_4:-84234314 Msa1000880:exon
ATGATCCTGAGGAAAGTGTG+AGG 0.756474 6_4:-84228344 Msa1000880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTAGAATTTTATTGTTTT+TGG - chr6_4:84225861-84225880 Msa1000880:intron 10.0%
!!! AATTAGAATTTTATTGTTTT+TGG - chr6_4:84225861-84225880 Msa1000880:intron 10.0%
!! ATTCAAAAATTAAAAACAAT+TGG + chr6_4:84226818-84226837 None:intergenic 10.0%
!! CAAAAAAAAAAAAAAATAAG+TGG + chr6_4:84227898-84227917 None:intergenic 10.0%
!!! ATTTTTTTTTTTCTTTTTGT+TGG - chr6_4:84228724-84228743 Msa1000880:CDS 10.0%
!! TATTCAAAATATTAAAATCT+GGG + chr6_4:84229620-84229639 None:intergenic 10.0%
!!! ATAGTAATACTTTTTAAAAA+GGG + chr6_4:84230310-84230329 None:intergenic 10.0%
!!! TTTAATTTATACAATACTTT+AGG + chr6_4:84233226-84233245 None:intergenic 10.0%
!!! TTTGAATTTGATTTTGATTT+TGG - chr6_4:84225080-84225099 Msa1000880:intron 15.0%
!!! TATTGATTTTAGTTACTTAA+TGG - chr6_4:84225202-84225221 Msa1000880:intron 15.0%
!!! ATTTTGGATTTTGATTTTTT+AGG - chr6_4:84225742-84225761 Msa1000880:intron 15.0%
!!! AGTTAATTTGATTTTGATTT+TGG - chr6_4:84226372-84226391 Msa1000880:CDS 15.0%
!!! CTGAGTAAATTTTATTTTAA+CGG - chr6_4:84226875-84226894 Msa1000880:CDS 15.0%
!!! TGAGTCAATTTTTATATTAA+TGG - chr6_4:84227048-84227067 Msa1000880:CDS 15.0%
!! TTAAAAATCAAAATCAAAAC+AGG + chr6_4:84227342-84227361 None:intergenic 15.0%
!!! TTTGATTTTGATTTTTAAGT+TGG - chr6_4:84227344-84227363 Msa1000880:CDS 15.0%
!! ATACAACATTAAAATCAAAT+GGG + chr6_4:84227408-84227427 None:intergenic 15.0%
!!! AAATTTGCATTATTTTTTGT+AGG - chr6_4:84228156-84228175 Msa1000880:CDS 15.0%
!! AAAAAAAAAAATCTAGAAAG+AGG + chr6_4:84228716-84228735 None:intergenic 15.0%
!! AAAATAAAAAATGCAATTAG+TGG - chr6_4:84228816-84228835 Msa1000880:CDS 15.0%
!!! TATTTCTTTCTTCTTTTTTT+GGG - chr6_4:84228931-84228950 Msa1000880:CDS 15.0%
!! GTATTCAAAATATTAAAATC+TGG + chr6_4:84229621-84229640 None:intergenic 15.0%
!!! CATAGTAATACTTTTTAAAA+AGG + chr6_4:84230311-84230330 None:intergenic 15.0%
!! TAAATTACTAAAGTTCATTT+GGG - chr6_4:84234194-84234213 Msa1000880:CDS 15.0%
!!! ATTGTTGAGTTGAAATTTTT+TGG - chr6_4:84225925-84225944 Msa1000880:intron 20.0%
!!! AATTAGGATTTGATTGTTTT+TGG - chr6_4:84226471-84226490 Msa1000880:CDS 20.0%
!!! AATGTAATTTGGTTTATGTT+TGG - chr6_4:84226603-84226622 Msa1000880:CDS 20.0%
!! CATACAACATTAAAATCAAA+TGG + chr6_4:84227409-84227428 None:intergenic 20.0%
!!! GACTTTTTTTTTTACTTTTC+CGG - chr6_4:84227951-84227970 Msa1000880:CDS 20.0%
!! AAAAGTCGAATAGATATAAA+AGG + chr6_4:84228355-84228374 None:intergenic 20.0%
!!! TCTTTCTTATTTCAATTTGT+TGG - chr6_4:84228382-84228401 Msa1000880:CDS 20.0%
!!! CTTTCTTATTTCAATTTGTT+GGG - chr6_4:84228383-84228402 Msa1000880:CDS 20.0%
!! ATAGTTTAATCAATTCATCA+GGG + chr6_4:84228537-84228556 None:intergenic 20.0%
!! AATAGTTTAATCAATTCATC+AGG + chr6_4:84228538-84228557 None:intergenic 20.0%
!! TAAATTATGAATTAAGCAAG+TGG - chr6_4:84228557-84228576 Msa1000880:CDS 20.0%
!!! CTATTTCTTTCTTCTTTTTT+TGG - chr6_4:84228930-84228949 Msa1000880:CDS 20.0%
!!! ATTTCTTTCTTCTTTTTTTG+GGG - chr6_4:84228932-84228951 Msa1000880:CDS 20.0%
!!! TTAATTAACTGACTTAACAA+TGG - chr6_4:84229146-84229165 Msa1000880:intron 20.0%
!! AAATTTATAGAACAATCAAC+TGG + chr6_4:84229274-84229293 None:intergenic 20.0%
!!! ACTTTTCTATAAAGTAAATC+TGG + chr6_4:84229315-84229334 None:intergenic 20.0%
!!! AAATATTATTTTACTTCCTC+AGG - chr6_4:84229414-84229433 Msa1000880:intron 20.0%
!! AATGGACAGAAAATATATTT+CGG + chr6_4:84229854-84229873 None:intergenic 20.0%
!! AGAAAACATCAAATAATCAA+TGG + chr6_4:84229872-84229891 None:intergenic 20.0%
!!! TTATTTTACCTTGATTTTGT+GGG - chr6_4:84229901-84229920 Msa1000880:intron 20.0%
!! ATCTTCATCATCAATATATA+GGG + chr6_4:84230527-84230546 None:intergenic 20.0%
!!! GAAATGGATTTACTTAAAAA+AGG - chr6_4:84231606-84231625 Msa1000880:intron 20.0%
!! ACTTAAATAAAAACAAAAGG+TGG + chr6_4:84233202-84233221 None:intergenic 20.0%
!! GGTACTTAAATAAAAACAAA+AGG + chr6_4:84233205-84233224 None:intergenic 20.0%
!! AATTAAAATTTATCATGAGC+TGG - chr6_4:84233239-84233258 Msa1000880:intron 20.0%
!! TATATTCTAAACAAATTGGA+AGG + chr6_4:84233964-84233983 None:intergenic 20.0%
!!! TTCCAATTTGTTTAGAATAT+AGG - chr6_4:84233963-84233982 Msa1000880:intron 20.0%
!! GTAAATTACTAAAGTTCATT+TGG - chr6_4:84234193-84234212 Msa1000880:CDS 20.0%
!! TTTGAAATATGTTTGGGAAT+TGG + chr6_4:84224679-84224698 None:intergenic 25.0%
!! TGTGCATTTGAAATATGTTT+GGG + chr6_4:84224685-84224704 None:intergenic 25.0%
! AAAACTAGATTATACGTTGA+TGG + chr6_4:84224835-84224854 None:intergenic 25.0%
!!! TTGCTTTTTTACTATGTGTT+TGG - chr6_4:84225238-84225257 Msa1000880:intron 25.0%
!! CTTTTTGATACATAATGTAG+AGG - chr6_4:84225596-84225615 Msa1000880:CDS 25.0%
! TCAAAATCCAAAATAGAAAG+AGG + chr6_4:84225736-84225755 None:intergenic 25.0%
!!! GATTTTTTAGGTGAAAATTG+TGG - chr6_4:84225754-84225773 Msa1000880:intron 25.0%
!!! TGATTGTTGAGTTGAAATTT+TGG - chr6_4:84225923-84225942 Msa1000880:intron 25.0%
!!! ATTTTTCTAGCTGAAAATTG+TGG - chr6_4:84226063-84226082 Msa1000880:CDS 25.0%
!! TAATATATGCTTAGTGTTGA+TGG - chr6_4:84226097-84226116 Msa1000880:CDS 25.0%
!! TAATGAGTTGGATAGAAATA+TGG - chr6_4:84226272-84226291 Msa1000880:CDS 25.0%
!!! TTGAATGAGAAGTTATTTTG+AGG - chr6_4:84226403-84226422 Msa1000880:CDS 25.0%
! CTTTGTAGTTTGAACTAATT+AGG - chr6_4:84226455-84226474 Msa1000880:CDS 25.0%
!!! GATTGTTTTTGGTTACTTAA+TGG - chr6_4:84226482-84226501 Msa1000880:CDS 25.0%
!! TGAATCTGTAAAATTGATTC+CGG - chr6_4:84226566-84226585 Msa1000880:CDS 25.0%
! AAAGTGAGATGAATGTAATT+TGG - chr6_4:84226592-84226611 Msa1000880:CDS 25.0%
!!! TAAACCTCTAGAATCAATTT+TGG - chr6_4:84226775-84226794 Msa1000880:CDS 25.0%
!!! TGATTTTAGTGTAGAAATTG+TGG - chr6_4:84227001-84227020 Msa1000880:CDS 25.0%
!! ATAAAAATTGACTCAGCAAT+CGG + chr6_4:84227043-84227062 None:intergenic 25.0%
!!! TGATTTTTGAGTTGAAATTG+TGG - chr6_4:84227170-84227189 Msa1000880:CDS 25.0%
!!! CTGAGTCAATTTGATTTTAA+TGG - chr6_4:84227218-84227237 Msa1000880:CDS 25.0%
!! AAACACTATTTTGTAGTTTG+AGG - chr6_4:84227256-84227275 Msa1000880:CDS 25.0%
!! AACACTATTTTGTAGTTTGA+GGG - chr6_4:84227257-84227276 Msa1000880:CDS 25.0%
! TTAATGTTGTATGTAGTTTG+AGG - chr6_4:84227416-84227435 Msa1000880:CDS 25.0%
! TAATGTTGTATGTAGTTTGA+GGG - chr6_4:84227417-84227436 Msa1000880:CDS 25.0%
! GAATTTCCGATTACTATATT+TGG - chr6_4:84227439-84227458 Msa1000880:CDS 25.0%
!! CAACATTTTGTAGTAAAAAG+CGG + chr6_4:84227549-84227568 None:intergenic 25.0%
!!! CATTGATTTGGTTACTTAAA+AGG - chr6_4:84227645-84227664 Msa1000880:CDS 25.0%
! TCTACTTTAAATTACTCATG+TGG - chr6_4:84227714-84227733 Msa1000880:CDS 25.0%
!!! TTTTTTTACTTTTCCGGTTT+TGG - chr6_4:84227957-84227976 Msa1000880:CDS 25.0%
!!! TTTTTTACTTTTCCGGTTTT+GGG - chr6_4:84227958-84227977 Msa1000880:CDS 25.0%
! ACAAACACAATTAGAAAAGT+GGG - chr6_4:84228074-84228093 Msa1000880:CDS 25.0%
! AAGAAAAAAGAGAAATCAGA+TGG + chr6_4:84228279-84228298 None:intergenic 25.0%
!!! TTTCTCTTTTTTCTTTGACA+CGG - chr6_4:84228284-84228303 Msa1000880:CDS 25.0%
! CGAATAGATATAAAAGGAAA+AGG + chr6_4:84228349-84228368 None:intergenic 25.0%
! TAAATTGTGAATTAAGCAAG+TGG - chr6_4:84228511-84228530 Msa1000880:CDS 25.0%
!! AGAGATTTTATGAAAATGGA+GGG - chr6_4:84228967-84228986 Msa1000880:CDS 25.0%
!!! TTGTTTTTCAACCATGTTTT+AGG - chr6_4:84229092-84229111 Msa1000880:CDS 25.0%
!! TCTTATTTAAGCCTAAAACA+TGG + chr6_4:84229106-84229125 None:intergenic 25.0%
! AATAAGAATACTTAATGTGC+AGG - chr6_4:84229119-84229138 Msa1000880:CDS 25.0%
! TTGTAGTAATATAATCTGCA+AGG - chr6_4:84229198-84229217 Msa1000880:intron 25.0%
! CATATTGTGTAATTATGTTG+AGG - chr6_4:84229224-84229243 Msa1000880:intron 25.0%
! TTTGAATACTTCATTCTCTA+TGG - chr6_4:84229632-84229651 Msa1000880:CDS 25.0%
! TTGAATACTTCATTCTCTAT+GGG - chr6_4:84229633-84229652 Msa1000880:CDS 25.0%
!!! CTTATTTTACCTTGATTTTG+TGG - chr6_4:84229900-84229919 Msa1000880:intron 25.0%
! TGATATTAATAGCTTACTGA+GGG - chr6_4:84230135-84230154 Msa1000880:intron 25.0%
!!! ACTTTTTAGATTTTCAGGAA+AGG + chr6_4:84230227-84230246 None:intergenic 25.0%
!! TGCAAACTTTTTAGATTTTC+AGG + chr6_4:84230232-84230251 None:intergenic 25.0%
! GATCTTCATCATCAATATAT+AGG + chr6_4:84230528-84230547 None:intergenic 25.0%
!!! TGTTTATGTTTGCTTTTTTG+TGG - chr6_4:84231131-84231150 Msa1000880:intron 25.0%
!!! GTTTATGTTTGCTTTTTTGT+GGG - chr6_4:84231132-84231151 Msa1000880:intron 25.0%
!! TTCATCACAGTCTAAAATAT+GGG - chr6_4:84231584-84231603 Msa1000880:intron 25.0%
! TAAAAAAGGAATTGATGAGT+TGG - chr6_4:84231620-84231639 Msa1000880:intron 25.0%
! TGAGTCTAAATTTAGAGATA+TGG - chr6_4:84231743-84231762 Msa1000880:intron 25.0%
! GAGTCTAAATTTAGAGATAT+GGG - chr6_4:84231744-84231763 Msa1000880:intron 25.0%
! AGTCTAAATTTAGAGATATG+GGG - chr6_4:84231745-84231764 Msa1000880:intron 25.0%
! GGACTATCTTCTAATAATAA+AGG - chr6_4:84232188-84232207 Msa1000880:intron 25.0%
! ATAATGCTGTTATTATCCAT+GGG + chr6_4:84232686-84232705 None:intergenic 25.0%
!! AAGAGACAAATCTTTTCTAT+AGG + chr6_4:84232926-84232945 None:intergenic 25.0%
! ACAGTATATTTGATAGAACT+AGG + chr6_4:84233118-84233137 None:intergenic 25.0%
! CAACATAGTTATGATCAATT+TGG + chr6_4:84233295-84233314 None:intergenic 25.0%
! CAAATTGATCATAACTATGT+TGG - chr6_4:84233293-84233312 Msa1000880:intron 25.0%
! TACTTCATATTTATAGTACC+CGG - chr6_4:84233342-84233361 Msa1000880:intron 25.0%
!!! TACGAAACAAAATCTAGTTT+TGG - chr6_4:84233783-84233802 Msa1000880:intron 25.0%
! TTTATGAATCAGTGTTTGAA+AGG - chr6_4:84233826-84233845 Msa1000880:intron 25.0%
! TAAAAGTAAAACAATCACTG+GGG + chr6_4:84233883-84233902 None:intergenic 25.0%
! GTAAAAGTAAAACAATCACT+GGG + chr6_4:84233884-84233903 None:intergenic 25.0%
! AGTAAAAGTAAAACAATCAC+TGG + chr6_4:84233885-84233904 None:intergenic 25.0%
! TGCCTATATTCTAAACAAAT+TGG + chr6_4:84233968-84233987 None:intergenic 25.0%
! TCCATAAAGTAAGTTATTGA+AGG - chr6_4:84234261-84234280 Msa1000880:CDS 25.0%
! ACCTTCAATAACTTACTTTA+TGG + chr6_4:84234265-84234284 None:intergenic 25.0%
! TATTTACATGATACGATCAA+GGG + chr6_4:84234378-84234397 None:intergenic 25.0%
! ATATTTACATGATACGATCA+AGG + chr6_4:84234379-84234398 None:intergenic 25.0%
! GTGTGCATTTGAAATATGTT+TGG + chr6_4:84224686-84224705 None:intergenic 30.0%
!!! CTAGTTTTGAAAGAAGTTCT+TGG - chr6_4:84224847-84224866 Msa1000880:three_prime_UTR 30.0%
GTTAAGGTTTATTTCAAACG+CGG - chr6_4:84224925-84224944 Msa1000880:CDS 30.0%
CGGTGATTCTATTAATCTTT+CGG - chr6_4:84224945-84224964 Msa1000880:CDS 30.0%
TTAATCTTTCGGAGTATGAA+CGG - chr6_4:84224956-84224975 Msa1000880:CDS 30.0%
GATGAAATTCAAACCTGAAA+AGG + chr6_4:84225036-84225055 None:intergenic 30.0%
TGTTGTAGTTTGAGCTAATT+AGG - chr6_4:84225126-84225145 Msa1000880:intron 30.0%
!! TAGTTTGAGTTGAGCTAATT+AGG - chr6_4:84225168-84225187 Msa1000880:intron 30.0%
AGCGAATTGATTATGTAGAA+GGG - chr6_4:84225284-84225303 Msa1000880:CDS 30.0%
TCATGTTGCTCAATAACTTA+CGG - chr6_4:84225543-84225562 Msa1000880:CDS 30.0%
!!! TTTTTGGTTACTAAACGTAG+TGG - chr6_4:84225877-84225896 Msa1000880:intron 30.0%
! GACCTATAGATTTTGTAGTA+AGG - chr6_4:84226159-84226178 Msa1000880:CDS 30.0%
CTCCTTACTACAAAATCTAT+AGG + chr6_4:84226164-84226183 None:intergenic 30.0%
! TAGATTTTGTAGTAAGGAGT+AGG - chr6_4:84226165-84226184 Msa1000880:CDS 30.0%
! GTTTCTCTTATAGTTTTCCA+AGG + chr6_4:84226231-84226250 None:intergenic 30.0%
TATCCAACTCATTAATCTCT+AGG + chr6_4:84226266-84226285 None:intergenic 30.0%
TGGTACATGATTGAACATTA+TGG - chr6_4:84226292-84226311 Msa1000880:CDS 30.0%
!!! TTTTGAGGTTTGAGTTGATT+AGG - chr6_4:84226418-84226437 Msa1000880:CDS 30.0%
!! ACATTCATCTCACTTTTAAC+CGG + chr6_4:84226588-84226607 None:intergenic 30.0%
CAAGTTAGAATCAATTGTGA+AGG - chr6_4:84226705-84226724 Msa1000880:CDS 30.0%
!! AGAATCGATTTTGACATGTT+TGG + chr6_4:84226756-84226775 None:intergenic 30.0%
!! AAAACAATTGGTTCCACTTT+TGG + chr6_4:84226806-84226825 None:intergenic 30.0%
! AGACTTTGTTTGTAGTTTGA+GGG - chr6_4:84226913-84226932 Msa1000880:CDS 30.0%
TGGATTAAAACTTGAATGAG+AGG - chr6_4:84227068-84227087 Msa1000880:CDS 30.0%
! TACTGTGTTTGTTAACTGAA+AGG - chr6_4:84227114-84227133 Msa1000880:CDS 30.0%
!!! TGATTTTTAAGTTGGCATTG+TGG - chr6_4:84227352-84227371 Msa1000880:CDS 30.0%
GCTGAACCAAATATAGTAAT+CGG + chr6_4:84227448-84227467 None:intergenic 30.0%
AAATCAATGTTGTCAATCAC+TGG + chr6_4:84227634-84227653 None:intergenic 30.0%
! AGTGATTGACAACATTGATT+TGG - chr6_4:84227633-84227652 Msa1000880:CDS 30.0%
! ATAAAGCAGCTTATCTTTTG+AGG - chr6_4:84227773-84227792 Msa1000880:CDS 30.0%
TTAGTCGATCATGCAAATTA+TGG + chr6_4:84227810-84227829 None:intergenic 30.0%
TTCTCAACGAAACTAAGAAA+AGG + chr6_4:84227841-84227860 None:intergenic 30.0%
TTAGTTTCGTTGAGAAGAAA+TGG - chr6_4:84227845-84227864 Msa1000880:CDS 30.0%
AAAAATAAGTGGACAAGTGA+AGG + chr6_4:84227887-84227906 None:intergenic 30.0%
GACAAACACAATTAGAAAAG+TGG - chr6_4:84228073-84228092 Msa1000880:CDS 30.0%
!!! TTCTCTTTTTTCTTTGACAC+GGG - chr6_4:84228285-84228304 Msa1000880:CDS 30.0%
CGTAAATAAGAAAGACAACT+TGG + chr6_4:84228413-84228432 None:intergenic 30.0%
GATTAAACTAGGACTCATAT+TGG - chr6_4:84228592-84228611 Msa1000880:CDS 30.0%
ATACTACTAATCTGTGCTTT+AGG - chr6_4:84228645-84228664 Msa1000880:CDS 30.0%
!!! ACAGATTTTTTGTTAACCTC+AGG + chr6_4:84228678-84228697 None:intergenic 30.0%
AAATAGGTGTTCTCTAATGT+TGG + chr6_4:84228776-84228795 None:intergenic 30.0%
AAACTACAGAGAGAGAAAAT+AGG + chr6_4:84228792-84228811 None:intergenic 30.0%
! ATTTTCATAAAATCTCTGGC+AGG + chr6_4:84228964-84228983 None:intergenic 30.0%
! TGCCAGAGATTTTATGAAAA+TGG - chr6_4:84228963-84228982 Msa1000880:CDS 30.0%
! CTCCATTTTCATAAAATCTC+TGG + chr6_4:84228968-84228987 None:intergenic 30.0%
! CAGAGATTTTATGAAAATGG+AGG - chr6_4:84228966-84228985 Msa1000880:CDS 30.0%
! GAGATTTTATGAAAATGGAG+GGG - chr6_4:84228968-84228987 Msa1000880:CDS 30.0%
ACAGCAAATAAATCCATAGA+TGG + chr6_4:84229026-84229045 None:intergenic 30.0%
!! TCTATGGATTTATTTGCTGT+TGG - chr6_4:84229026-84229045 Msa1000880:CDS 30.0%
!! CTATGGATTTATTTGCTGTT+GGG - chr6_4:84229027-84229046 Msa1000880:CDS 30.0%
AAAGTAAATCTGGAGACTTT+GGG + chr6_4:84229305-84229324 None:intergenic 30.0%
TAAAGTAAATCTGGAGACTT+TGG + chr6_4:84229306-84229325 None:intergenic 30.0%
TTATAGAAAAGTAACCAGTG+TGG - chr6_4:84229323-84229342 Msa1000880:CDS 30.0%
ATATTTGTACCTTAGCAAGA+AGG + chr6_4:84229400-84229419 None:intergenic 30.0%
!!! ACTTTTTCAAGATGTTGACT+TGG + chr6_4:84229524-84229543 None:intergenic 30.0%
!!! TGTCTTATTTTGTTCTCCAA+TGG - chr6_4:84229556-84229575 Msa1000880:CDS 30.0%
TTCTGCTGAAATGTATCTAA+AGG - chr6_4:84229726-84229745 Msa1000880:intron 30.0%
GAAATGGTGAAAAATAGGTA+GGG + chr6_4:84229771-84229790 None:intergenic 30.0%
AGAAATGGTGAAAAATAGGT+AGG + chr6_4:84229772-84229791 None:intergenic 30.0%
ATGCAGAAATGGTGAAAAAT+AGG + chr6_4:84229776-84229795 None:intergenic 30.0%
TCATTTGTTTAAGTATCTCC+TGG + chr6_4:84229964-84229983 None:intergenic 30.0%
GTGATATTAATAGCTTACTG+AGG - chr6_4:84230134-84230153 Msa1000880:intron 30.0%
AATAATAATAAGAGTCCAGC+TGG - chr6_4:84230166-84230185 Msa1000880:intron 30.0%
AGCATAGGAAAAATATACTC+AGG + chr6_4:84230688-84230707 None:intergenic 30.0%
TATTTATCATCATTCTTCCC+GGG + chr6_4:84230885-84230904 None:intergenic 30.0%
CTATTTATCATCATTCTTCC+CGG + chr6_4:84230886-84230905 None:intergenic 30.0%
!! GTTGTTCAAGAACTTGTTAT+GGG - chr6_4:84230946-84230965 Msa1000880:intron 30.0%
!!! GGTAAACTTTGCTACTTTTT+TGG - chr6_4:84231015-84231034 Msa1000880:intron 30.0%
TAGAATAGCCAAACATTCTA+AGG + chr6_4:84231238-84231257 None:intergenic 30.0%
TTGGCTATTCTATGCAAAAA+TGG - chr6_4:84231246-84231265 Msa1000880:CDS 30.0%
TGGCTATTCTATGCAAAAAT+GGG - chr6_4:84231247-84231266 Msa1000880:CDS 30.0%
AGGATAACACAATAAAGCAA+AGG + chr6_4:84231313-84231332 None:intergenic 30.0%
TATTGTGTTATCCTAGTGAA+TGG - chr6_4:84231319-84231338 Msa1000880:intron 30.0%
ATTGTGTTATCCTAGTGAAT+GGG - chr6_4:84231320-84231339 Msa1000880:intron 30.0%
TAGAAAGACAGAGAAAGATA+TGG - chr6_4:84231556-84231575 Msa1000880:intron 30.0%
! GTTCATCACAGTCTAAAATA+TGG - chr6_4:84231583-84231602 Msa1000880:intron 30.0%
! ACAGTCTAAAATATGGGAAA+TGG - chr6_4:84231590-84231609 Msa1000880:intron 30.0%
GTCTAAATTTAGAGATATGG+GGG - chr6_4:84231746-84231765 Msa1000880:intron 30.0%
GTTGCTATCATTATGCATAA+AGG + chr6_4:84231772-84231791 None:intergenic 30.0%
CATAATGATAGCAACATGTT+GGG - chr6_4:84231777-84231796 Msa1000880:intron 30.0%
! TTTATGTCACCAACTTTTAG+TGG - chr6_4:84231843-84231862 Msa1000880:intron 30.0%
TCCATTACAAATGAATTCTC+TGG - chr6_4:84231968-84231987 Msa1000880:intron 30.0%
CCATTACAAATGAATTCTCT+GGG - chr6_4:84231969-84231988 Msa1000880:intron 30.0%
!! AAATTAAAGGACTTGCTAAG+TGG + chr6_4:84232026-84232045 None:intergenic 30.0%
ACTTAGCAAGTCCTTTAATT+TGG - chr6_4:84232025-84232044 Msa1000880:intron 30.0%
AACTGAATTGGCCAAATTAA+AGG + chr6_4:84232039-84232058 None:intergenic 30.0%
AAAGAACCTGAAAAAAGCTT+TGG + chr6_4:84232068-84232087 None:intergenic 30.0%
TACATCAATTTCACTAGAAG+AGG - chr6_4:84232211-84232230 Msa1000880:intron 30.0%
AAATCCTGATAAATCAGCTT+GGG + chr6_4:84232243-84232262 None:intergenic 30.0%
ACTCACAAAAAAGCTATTGT+CGG + chr6_4:84232375-84232394 None:intergenic 30.0%
! AATGTCTTTTTCCAGCTTTT+TGG + chr6_4:84232432-84232451 None:intergenic 30.0%
!! AATGTTGTTGAGAAGTATTC+TGG - chr6_4:84232599-84232618 Msa1000880:intron 30.0%
TAATGCTGTTATTATCCATG+GGG + chr6_4:84232685-84232704 None:intergenic 30.0%
CATAATGCTGTTATTATCCA+TGG + chr6_4:84232687-84232706 None:intergenic 30.0%
CTATTTATCCAGAGAAGATA+TGG - chr6_4:84233152-84233171 Msa1000880:intron 30.0%
ATAGTTATGATCAATTTGGC+AGG + chr6_4:84233291-84233310 None:intergenic 30.0%
TTCGTACAAGAAAATAATCC+GGG + chr6_4:84233363-84233382 None:intergenic 30.0%
GTTCGTACAAGAAAATAATC+CGG + chr6_4:84233364-84233383 None:intergenic 30.0%
! GATTATTTTCTTGTACGAAC+AGG - chr6_4:84233364-84233383 Msa1000880:intron 30.0%
TGATTTAAAGATACGTCGAT+GGG - chr6_4:84233601-84233620 Msa1000880:intron 30.0%
TTTGTGTTGAACTTCAATCT+CGG - chr6_4:84233636-84233655 Msa1000880:intron 30.0%
AATATCCAACAGCATTTAGA+TGG + chr6_4:84233923-84233942 None:intergenic 30.0%
!! AAACAAATTGGAAGGTATTG+AGG + chr6_4:84233956-84233975 None:intergenic 30.0%
AATTTACTTCCAAACCTTGA+TGG + chr6_4:84234180-84234199 None:intergenic 30.0%
TGTACATAATTAGCAATTCC+TGG - chr6_4:84234223-84234242 Msa1000880:CDS 30.0%
TCAGAACATCTAACAAAAAC+TGG + chr6_4:84234329-84234348 None:intergenic 30.0%
ATCAAGGGTAATTAACTAAC+TGG + chr6_4:84234363-84234382 None:intergenic 30.0%
! TATTAGTTTCTCTCGAATCT+TGG - chr6_4:84234409-84234428 Msa1000880:five_prime_UTR 30.0%
! GATTATGTGTGGACTATTTG+CGG + chr6_4:84224746-84224765 None:intergenic 35.0%
!! TGAAGGATTGGTTCTTGTTA+AGG - chr6_4:84224909-84224928 Msa1000880:CDS 35.0%
! GTATTGATCATCCTCATGTT+TGG - chr6_4:84225010-84225029 Msa1000880:CDS 35.0%
GAGCGAATTGATTATGTAGA+AGG - chr6_4:84225283-84225302 Msa1000880:CDS 35.0%
GCGAATTGATTATGTAGAAG+GGG - chr6_4:84225285-84225304 Msa1000880:CDS 35.0%
! AGTTTTCTCTTCAACTTGAG+TGG + chr6_4:84225355-84225374 None:intergenic 35.0%
! TCAATAACTTACGGTGCTTT+TGG - chr6_4:84225552-84225571 Msa1000880:CDS 35.0%
!!! AGCTGTTTTTAGTAGCTTCT+CGG + chr6_4:84225695-84225714 None:intergenic 35.0%
! AGGTTCACCTCTTTCTATTT+TGG - chr6_4:84225726-84225745 Msa1000880:intron 35.0%
TTAGGTGAAAATTGTGGTTG+CGG - chr6_4:84225760-84225779 Msa1000880:intron 35.0%
!! TATATGCTTAGTGTTGATGG+TGG - chr6_4:84226100-84226119 Msa1000880:CDS 35.0%
AAACTAAGCTTAGGTGGTTT+GGG - chr6_4:84226123-84226142 Msa1000880:CDS 35.0%
AAGCCTAGAGATTAATGAGT+TGG - chr6_4:84226260-84226279 Msa1000880:CDS 35.0%
TTGCTCTGTTAGTGTGTATT+TGG - chr6_4:84226518-84226537 Msa1000880:CDS 35.0%
! GGAACCAAAATTGATTCTAG+AGG + chr6_4:84226782-84226801 None:intergenic 35.0%
!!! AATTTTGGTTCCTCCAAAAG+TGG - chr6_4:84226790-84226809 Msa1000880:CDS 35.0%
! GAGACTTTGTTTGTAGTTTG+AGG - chr6_4:84226912-84226931 Msa1000880:CDS 35.0%
! AATTGACTCAGCATTAAGTG+TGG + chr6_4:84227209-84227228 None:intergenic 35.0%
!! AATGGGCTAAAAGTTCAGTT+AGG + chr6_4:84227391-84227410 None:intergenic 35.0%
!! TTGTAGTAAAAAGCGGATTG+CGG + chr6_4:84227542-84227561 None:intergenic 35.0%
TCATGACACTATAGTGATGT+TGG - chr6_4:84227583-84227602 Msa1000880:CDS 35.0%
CATGACACTATAGTGATGTT+GGG - chr6_4:84227584-84227603 Msa1000880:CDS 35.0%
ACTATAGTGATGTTGGGTAT+TGG - chr6_4:84227590-84227609 Msa1000880:CDS 35.0%
ATGTTGTCAATCACTGGTAA+CGG + chr6_4:84227628-84227647 None:intergenic 35.0%
! TGTCTGTGATTTTGCAGTTT+TGG - chr6_4:84227740-84227759 Msa1000880:CDS 35.0%
TTTCGTTGAGAAGAAATGGT+TGG - chr6_4:84227849-84227868 Msa1000880:CDS 35.0%
TTTACAGCTAAAAGCAACTG+TGG + chr6_4:84227988-84228007 None:intergenic 35.0%
TGCTAATTACGTCCTCAAAT+TGG - chr6_4:84228199-84228218 Msa1000880:CDS 35.0%
AAATCAGATGGATCGTCATA+CGG + chr6_4:84228267-84228286 None:intergenic 35.0%
CCTCTAAGCAGATAATTATC+TGG + chr6_4:84228485-84228504 None:intergenic 35.0%
CCAGATAATTATCTGCTTAG+AGG - chr6_4:84228482-84228501 Msa1000880:CDS 35.0%
CTAGTTTAATCAAGTCAGCA+GGG + chr6_4:84228583-84228602 None:intergenic 35.0%
!! AATCCATAGATGGCTTTAGA+GGG + chr6_4:84229016-84229035 None:intergenic 35.0%
!! AAATCCATAGATGGCTTTAG+AGG + chr6_4:84229017-84229036 None:intergenic 35.0%
GTGTAATTATGTTGAGGTAG+TGG - chr6_4:84229230-84229249 Msa1000880:intron 35.0%
! TTTTGTGTTCCTTCTTGCTA+AGG - chr6_4:84229388-84229407 Msa1000880:CDS 35.0%
AGTTGAGACAGTTCAAATAG+TGG + chr6_4:84229473-84229492 None:intergenic 35.0%
TCCAATGGTCCCATTAATAA+GGG - chr6_4:84229571-84229590 Msa1000880:CDS 35.0%
TAAAATCTGGGTCATGAGTA+TGG + chr6_4:84229608-84229627 None:intergenic 35.0%
ATGTATCTAAAGGAATACGC+CGG - chr6_4:84229736-84229755 Msa1000880:intron 35.0%
CGGTAAAAATCATGCAGAAA+TGG + chr6_4:84229787-84229806 None:intergenic 35.0%
CATATACCCTCATATCAGAA+TGG + chr6_4:84229825-84229844 None:intergenic 35.0%
AGATTGTTCCCACAAAATCA+AGG + chr6_4:84229912-84229931 None:intergenic 35.0%
CATGATCAGTATGAACTTCT+TGG - chr6_4:84230112-84230131 Msa1000880:intron 35.0%
ACTATATCGAATGCATTTCG+AGG - chr6_4:84230274-84230293 Msa1000880:intron 35.0%
ATCCGACTGACTATCATATT+CGG + chr6_4:84230356-84230375 None:intergenic 35.0%
!! TCCTTTGGTAATGGTAGAAA+GGG + chr6_4:84230391-84230410 None:intergenic 35.0%
!! ATCCTTTGGTAATGGTAGAA+AGG + chr6_4:84230392-84230411 None:intergenic 35.0%
CTCATAGTATCCTTTGGTAA+TGG + chr6_4:84230400-84230419 None:intergenic 35.0%
TCACATCTCATAGTATCCTT+TGG + chr6_4:84230406-84230425 None:intergenic 35.0%
AAGGATACTATGAGATGTGA+AGG - chr6_4:84230406-84230425 Msa1000880:intron 35.0%
!! GAAAGCATTGCAATCACATA+TGG + chr6_4:84230568-84230587 None:intergenic 35.0%
AATATCTTTGCATCACTAGG+AGG + chr6_4:84230664-84230683 None:intergenic 35.0%
GGAAATATCTTTGCATCACT+AGG + chr6_4:84230667-84230686 None:intergenic 35.0%
ATTTATCATCATTCTTCCCG+GGG + chr6_4:84230884-84230903 None:intergenic 35.0%
!! GGTTGTTCAAGAACTTGTTA+TGG - chr6_4:84230945-84230964 Msa1000880:intron 35.0%
CTAATATTTGGCGTTTGCTT+TGG + chr6_4:84230973-84230992 None:intergenic 35.0%
CAAAGCAAACGCCAAATATT+AGG - chr6_4:84230971-84230990 Msa1000880:intron 35.0%
ATCTCGATCATTTAAGAAGG+CGG + chr6_4:84231079-84231098 None:intergenic 35.0%
CTCATCTCGATCATTTAAGA+AGG + chr6_4:84231082-84231101 None:intergenic 35.0%
ATGATCGAGATGAGCAATTA+AGG - chr6_4:84231088-84231107 Msa1000880:intron 35.0%
! CTTAAAGCTTGCTCAATGTA+AGG + chr6_4:84231186-84231205 None:intergenic 35.0%
TGTTAGAGCCTTAGAATGTT+TGG - chr6_4:84231227-84231246 Msa1000880:CDS 35.0%
! TATGCAAAAATGGGTTCTTC+CGG - chr6_4:84231256-84231275 Msa1000880:CDS 35.0%
! TTTGAAGCAATATCCTCTTC+CGG + chr6_4:84231278-84231297 None:intergenic 35.0%
! ACAGGTTTTCTATGAAGTCT+TGG - chr6_4:84231509-84231528 Msa1000880:intron 35.0%
GCATAATGATAGCAACATGT+TGG - chr6_4:84231776-84231795 Msa1000880:intron 35.0%
! TATAAAGGTATGCCTTCAGA+TGG + chr6_4:84231894-84231913 None:intergenic 35.0%
CCCAGAGAATTCATTTGTAA+TGG + chr6_4:84231972-84231991 None:intergenic 35.0%
! AAGACTGTCTCATTTTCCTT+AGG + chr6_4:84232143-84232162 None:intergenic 35.0%
AATAGCACATTTCAAGACGT+CGG - chr6_4:84232167-84232186 Msa1000880:intron 35.0%
GAAATCCTGATAAATCAGCT+TGG + chr6_4:84232244-84232263 None:intergenic 35.0%
! CAGGATTTCAATCTTTTGCT+CGG - chr6_4:84232255-84232274 Msa1000880:intron 35.0%
AATCTTGACTGTTGAGTCAT+CGG + chr6_4:84232402-84232421 None:intergenic 35.0%
ATGACTCAACAGTCAAGATT+TGG - chr6_4:84232402-84232421 Msa1000880:intron 35.0%
TGACTCAACAGTCAAGATTT+GGG - chr6_4:84232403-84232422 Msa1000880:intron 35.0%
TGGAAAAAGACATTTCCTTC+AGG - chr6_4:84232438-84232457 Msa1000880:intron 35.0%
!! ATAAGTTAGCTTTGACCTGA+AGG + chr6_4:84232456-84232475 None:intergenic 35.0%
TCTGTTGATCATATCTCTAG+AGG - chr6_4:84232569-84232588 Msa1000880:intron 35.0%
TATTGCTGATGTCACAAAGA+AGG - chr6_4:84232622-84232641 Msa1000880:intron 35.0%
ACAAAGAAGGATACCAAAGA+AGG - chr6_4:84232635-84232654 Msa1000880:intron 35.0%
TATCCATGGGGCAATTTAAA+AGG + chr6_4:84232673-84232692 None:intergenic 35.0%
! AGCTTTTAACGTCCAAGAAT+TGG + chr6_4:84232759-84232778 None:intergenic 35.0%
TTCTTGTACCTGTAAACTCT+TGG - chr6_4:84232882-84232901 Msa1000880:intron 35.0%
GAATACTTCCAAGAGTTTAC+AGG + chr6_4:84232893-84232912 None:intergenic 35.0%
GTTGCAATGAAGTTTCTCTT+TGG - chr6_4:84233008-84233027 Msa1000880:intron 35.0%
AGTTACAAATATCCCATACC+TGG + chr6_4:84233057-84233076 None:intergenic 35.0%
CTAGAAAACCATATCTTCTC+TGG + chr6_4:84233163-84233182 None:intergenic 35.0%
TTCTGCATCACTGTCATAAT+TGG + chr6_4:84233402-84233421 None:intergenic 35.0%
TTGCGATTAACATTTCGTCT+TGG + chr6_4:84233485-84233504 None:intergenic 35.0%
AATAAATCACCACCTGGTAA+GGG + chr6_4:84233569-84233588 None:intergenic 35.0%
CTGATTTAAAGATACGTCGA+TGG - chr6_4:84233600-84233619 Msa1000880:intron 35.0%
ATTTGTGGACCAAACCTAAA+AGG - chr6_4:84233741-84233760 Msa1000880:intron 35.0%
!!! TTTCCAACTCCTTTTAGGTT+TGG + chr6_4:84233753-84233772 None:intergenic 35.0%
! GACCTTTTACTCTTATCAAC+AGG - chr6_4:84233998-84234017 Msa1000880:intron 35.0%
! CTCCTGTTGATAAGAGTAAA+AGG + chr6_4:84234003-84234022 None:intergenic 35.0%
CTTATCAACAGGAGACAAAA+AGG - chr6_4:84234009-84234028 Msa1000880:intron 35.0%
!! AGTTATTGAAGGTGTTGTCT+TGG - chr6_4:84234272-84234291 Msa1000880:CDS 35.0%
TAGTCCACACATAATCTCGA+TGG - chr6_4:84224750-84224769 Msa1000880:three_prime_UTR 40.0%
AGTCCACACATAATCTCGAT+GGG - chr6_4:84224751-84224770 Msa1000880:three_prime_UTR 40.0%
TTGAAAGAAGTTCTTGGACG+CGG - chr6_4:84224853-84224872 Msa1000880:three_prime_UTR 40.0%
ATTCAGTGTAAGCACGATGA+AGG - chr6_4:84224892-84224911 Msa1000880:CDS 40.0%
ACGGAGGATTTCGATGATTA+AGG - chr6_4:84224975-84224994 Msa1000880:CDS 40.0%
GAGAAAACTTTATCAGACCG+CGG - chr6_4:84225366-84225385 Msa1000880:intron 40.0%
GTGGTAAGACTAGATGTGAT+AGG - chr6_4:84225465-84225484 Msa1000880:CDS 40.0%
GACTACATTAGAGAGAGAGT+TGG - chr6_4:84225497-84225516 Msa1000880:CDS 40.0%
! AACTTACGGTGCTTTTGGTA+CGG - chr6_4:84225557-84225576 Msa1000880:CDS 40.0%
GCTACTAAAAACAGCTTCTC+AGG - chr6_4:84225699-84225718 Msa1000880:intron 40.0%
AAAACAGCTTCTCAGGTTCA+AGG - chr6_4:84225706-84225725 Msa1000880:intron 40.0%
CTAGCTGAAAATTGTGGTTG+CGG - chr6_4:84226069-84226088 Msa1000880:CDS 40.0%
!! TGATGGTGGAAACTAAGCTT+AGG - chr6_4:84226114-84226133 Msa1000880:CDS 40.0%
GAAACTAAGCTTAGGTGGTT+TGG - chr6_4:84226122-84226141 Msa1000880:CDS 40.0%
ATTATCCCACTATGTGTGGT+TGG + chr6_4:84226337-84226356 None:intergenic 40.0%
AAGCATTATCCCACTATGTG+TGG + chr6_4:84226341-84226360 None:intergenic 40.0%
!! ACAATTGGTTCCACTTTTGG+AGG + chr6_4:84226803-84226822 None:intergenic 40.0%
! AATTGACTCAGCAATCGGTT+AGG + chr6_4:84227038-84227057 None:intergenic 40.0%
!! GAAAGGACTTGTTGATACTC+TGG - chr6_4:84227131-84227150 Msa1000880:CDS 40.0%
AAATTCCGCTACGCTTTAGT+GGG + chr6_4:84227501-84227520 None:intergenic 40.0%
!!! GAAGAAATGGTTGGCTTTTC+AGG - chr6_4:84227858-84227877 Msa1000880:CDS 40.0%
! AACTGTGGATTACCCAAAAC+CGG + chr6_4:84227973-84227992 None:intergenic 40.0%
CACAATTAGAAAAGTGGGAG+TGG - chr6_4:84228079-84228098 Msa1000880:CDS 40.0%
AGCAAGGTAAAGCCAATTTG+AGG + chr6_4:84228214-84228233 None:intergenic 40.0%
TGAAAGAAGCAAAGTCAGCA+AGG + chr6_4:84228230-84228249 None:intergenic 40.0%
TCGTCATACGGTATGTATGT+GGG + chr6_4:84228255-84228274 None:intergenic 40.0%
ATCGTCATACGGTATGTATG+TGG + chr6_4:84228256-84228275 None:intergenic 40.0%
!!! TCTTTTTTCTTTGACACGGG+AGG - chr6_4:84228288-84228307 Msa1000880:CDS 40.0%
AGGAAGAAGACTCTGTTATC+TGG - chr6_4:84228308-84228327 Msa1000880:CDS 40.0%
CCTAGTTTAATCAAGTCAGC+AGG + chr6_4:84228584-84228603 None:intergenic 40.0%
!! CCTGCTGACTTGATTAAACT+AGG - chr6_4:84228581-84228600 Msa1000880:CDS 40.0%
!! ATCCATAGATGGCTTTAGAG+GGG + chr6_4:84229015-84229034 None:intergenic 40.0%
! AATCGCTGAACTTTTCCTTG+AGG - chr6_4:84229442-84229461 Msa1000880:intron 40.0%
! ATCGCTGAACTTTTCCTTGA+GGG - chr6_4:84229443-84229462 Msa1000880:intron 40.0%
GAGACAGTTCAAATAGTGGT+TGG + chr6_4:84229469-84229488 None:intergenic 40.0%
CTCCAATGGTCCCATTAATA+AGG - chr6_4:84229570-84229589 Msa1000880:CDS 40.0%
CCAATGGTCCCATTAATAAG+GGG - chr6_4:84229572-84229591 Msa1000880:CDS 40.0%
AGGTGGAACCCCTTATTAAT+GGG + chr6_4:84229583-84229602 None:intergenic 40.0%
ATCTTGCGGATTCCAATATC+TGG + chr6_4:84229667-84229686 None:intergenic 40.0%
TCATGTGCTGAATCATCTTG+CGG + chr6_4:84229681-84229700 None:intergenic 40.0%
ATAGGTAGGGAATACAACTC+CGG + chr6_4:84229758-84229777 None:intergenic 40.0%
! TGCATGATTTTTACCGTTGC+TGG - chr6_4:84229791-84229810 Msa1000880:intron 40.0%
TTTGTGGGAACAATCTATGC+AGG - chr6_4:84229916-84229935 Msa1000880:intron 40.0%
!! TGGAGAACTTTTGGAAGAGA+TGG - chr6_4:84230021-84230040 Msa1000880:intron 40.0%
AAAAGAGAGGACATAGGCAA+AGG - chr6_4:84230082-84230101 Msa1000880:CDS 40.0%
CTAAAAAGTTTGCAGTCTCC+TGG - chr6_4:84230238-84230257 Msa1000880:intron 40.0%
GTCCGAATATGATAGTCAGT+CGG - chr6_4:84230351-84230370 Msa1000880:intron 40.0%
GATAGTCAGTCGGATACATT+TGG - chr6_4:84230361-84230380 Msa1000880:intron 40.0%
TACTATGAGATGTGAAGGCA+TGG - chr6_4:84230411-84230430 Msa1000880:intron 40.0%
! TCAGGAAGCATAGAAAGCAT+AGG + chr6_4:84230703-84230722 None:intergenic 40.0%
ACACTCAATAAGCTTGAGTG+AGG - chr6_4:84230801-84230820 Msa1000880:CDS 40.0%
GATGATGTAAATGGCTTCTG+TGG + chr6_4:84230853-84230872 None:intergenic 40.0%
!! AGAAGCGCTCTCCTAATATT+TGG + chr6_4:84230985-84231004 None:intergenic 40.0%
TCTCGATCATTTAAGAAGGC+GGG + chr6_4:84231078-84231097 None:intergenic 40.0%
TCGAGATGAGCAATTAAGGA+CGG - chr6_4:84231092-84231111 Msa1000880:intron 40.0%
!! TTCTCTGAAGCAAGAGATAC+AGG + chr6_4:84231453-84231472 None:intergenic 40.0%
TAGAAAACCTGTCTTGAGAC+AGG + chr6_4:84231501-84231520 None:intergenic 40.0%
AGTTGGACTCATTAAAGAGC+TGG - chr6_4:84231637-84231656 Msa1000880:intron 40.0%
GTTGGACTCATTAAAGAGCT+GGG - chr6_4:84231638-84231657 Msa1000880:intron 40.0%
GCTCAACAAATTGTTGGAAC+TGG - chr6_4:84231684-84231703 Msa1000880:intron 40.0%
! TCGGAGAAGTTACAGTTTTC+AGG - chr6_4:84231819-84231838 Msa1000880:intron 40.0%
ACATATGACAAGCCATCTGA+AGG - chr6_4:84231879-84231898 Msa1000880:intron 40.0%
ACCTTTATACTCCTTCAGTG+TGG - chr6_4:84231905-84231924 Msa1000880:intron 40.0%
! TCCACACTGAAGGAGTATAA+AGG + chr6_4:84231909-84231928 None:intergenic 40.0%
TTAGTTCATCTGCAATGCCT+TGG - chr6_4:84231994-84232013 Msa1000880:intron 40.0%
TAGTTCATCTGCAATGCCTT+GGG - chr6_4:84231995-84232014 Msa1000880:intron 40.0%
!! TTGCTAAGTGGATTAACCCA+AGG + chr6_4:84232014-84232033 None:intergenic 40.0%
!! CTTTGGTGATGGAACTGAAT+TGG + chr6_4:84232051-84232070 None:intergenic 40.0%
! CCTGAAAAAAGCTTTGGTGA+TGG + chr6_4:84232062-84232081 None:intergenic 40.0%
!!! CCATCACCAAAGCTTTTTTC+AGG - chr6_4:84232059-84232078 Msa1000880:intron 40.0%
! GGTTCTTTTAGCATCAGCAA+TGG - chr6_4:84232080-84232099 Msa1000880:intron 40.0%
! GTCTCATTTTCCTTAGGATC+TGG + chr6_4:84232137-84232156 None:intergenic 40.0%
! ACTACCCAAGCTGATTTATC+AGG - chr6_4:84232236-84232255 Msa1000880:intron 40.0%
! GATTTGGGATTCCAAAAAGC+TGG - chr6_4:84232418-84232437 Msa1000880:intron 40.0%
GTCAAAGCTAACTTATCACC+TGG - chr6_4:84232460-84232479 Msa1000880:intron 40.0%
AAAGCTAACTTATCACCTGG+AGG - chr6_4:84232463-84232482 Msa1000880:intron 40.0%
AAGCTAACTTATCACCTGGA+GGG - chr6_4:84232464-84232483 Msa1000880:intron 40.0%
TTATGTGTAGCAATGCTTCC+AGG - chr6_4:84232497-84232516 Msa1000880:intron 40.0%
! GATCATATCTCTAGAGGTCT+AGG - chr6_4:84232575-84232594 Msa1000880:intron 40.0%
! ACCAAAGAAGGTGCAATACT+TGG - chr6_4:84232647-84232666 Msa1000880:intron 40.0%
TAGATGAATGCCACAGTTCT+GGG + chr6_4:84232717-84232736 None:intergenic 40.0%
ATAGATGAATGCCACAGTTC+TGG + chr6_4:84232718-84232737 None:intergenic 40.0%
AGAACTGTGGCATTCATCTA+TGG - chr6_4:84232717-84232736 Msa1000880:intron 40.0%
GAACTGTGGCATTCATCTAT+GGG - chr6_4:84232718-84232737 Msa1000880:intron 40.0%
CGAGGTCAAATTCCAATTCT+TGG - chr6_4:84232744-84232763 Msa1000880:intron 40.0%
TTAAAAGCTACTCCTGACGA+GGG - chr6_4:84232770-84232789 Msa1000880:intron 40.0%
GATACAAACCAGTTGGAACA+AGG + chr6_4:84232821-84232840 None:intergenic 40.0%
!! TGTTCCAACTGGTTTGTATC+AGG - chr6_4:84232821-84232840 Msa1000880:intron 40.0%
!! GTTCCAACTGGTTTGTATCA+GGG - chr6_4:84232822-84232841 Msa1000880:intron 40.0%
!! GTTGAAGACAGAGAAGCATT+TGG + chr6_4:84232959-84232978 None:intergenic 40.0%
TACAAATATCCCATACCTGG+TGG + chr6_4:84233054-84233073 None:intergenic 40.0%
GTTATGATCAATTTGGCAGG+AGG + chr6_4:84233288-84233307 None:intergenic 40.0%
AGAAATGTCCGATATGCCTT+GGG - chr6_4:84233418-84233437 Msa1000880:intron 40.0%
! AGTTGGCTTACTTGAAGGTT+TGG + chr6_4:84233450-84233469 None:intergenic 40.0%
! TGAGAAGTTGGCTTACTTGA+AGG + chr6_4:84233455-84233474 None:intergenic 40.0%
CAATAAATCACCACCTGGTA+AGG + chr6_4:84233570-84233589 None:intergenic 40.0%
! CAGGTGGTGATTTATTGACT+GGG - chr6_4:84233573-84233592 Msa1000880:intron 40.0%
! AGGTGGTGATTTATTGACTG+GGG - chr6_4:84233574-84233593 Msa1000880:intron 40.0%
! CAAATGCAGTAGCTTTTGTC+AGG + chr6_4:84233726-84233745 None:intergenic 40.0%
GACAAAAGCTACTGCATTTG+TGG - chr6_4:84233726-84233745 Msa1000880:intron 40.0%
! CGTCATTTCCAACTCCTTTT+AGG + chr6_4:84233758-84233777 None:intergenic 40.0%
!!! TTTTGGAGTGCAAGTTGTAC+AGG - chr6_4:84233800-84233819 Msa1000880:intron 40.0%
AAAACAATCACTGGGGTAAC+AGG + chr6_4:84233876-84233895 None:intergenic 40.0%
CTGTACCATCTAAATGCTGT+TGG - chr6_4:84233915-84233934 Msa1000880:intron 40.0%
ATCAACAGGAGACAAAAAGG+CGG - chr6_4:84234012-84234031 Msa1000880:intron 40.0%
TACTCTCAAGTGGTAGAGAT+GGG - chr6_4:84234153-84234172 Msa1000880:CDS 40.0%
!! ATTGAAGGTGTTGTCTTGGT+TGG - chr6_4:84234276-84234295 Msa1000880:CDS 40.0%
! GTTAGATGTTCTGAGTCTTG+TGG - chr6_4:84234335-84234354 Msa1000880:five_prime_UTR 40.0%
CTACAGCTGAAAGCAGATAT+TGG + chr6_4:84234447-84234466 None:intergenic 40.0%
CAATATCTGCTTTCAGCTGT+AGG - chr6_4:84234445-84234464 Msa1000880:five_prime_UTR 40.0%
GTCCACACATAATCTCGATG+GGG - chr6_4:84224752-84224771 Msa1000880:three_prime_UTR 45.0%
TTCCCCATCGAGATTATGTG+TGG + chr6_4:84224757-84224776 None:intergenic 45.0%
!! ACGTTGATGGTAACTCGTGT+AGG + chr6_4:84224822-84224841 None:intergenic 45.0%
GTGTAAGCACGATGAAGGAT+TGG - chr6_4:84224897-84224916 Msa1000880:CDS 45.0%
ATCTTTCGGAGTATGAACGG+AGG - chr6_4:84224959-84224978 Msa1000880:CDS 45.0%
!! TCCTCATGTTTGGCCTTTTC+AGG - chr6_4:84225020-84225039 Msa1000880:CDS 45.0%
ACCTGAAAAGGCCAAACATG+AGG + chr6_4:84225024-84225043 None:intergenic 45.0%
CAGAGATGAAGATGTTGCGT+TGG - chr6_4:84225438-84225457 Msa1000880:intron 45.0%
AAGATGTTGCGTTGGATGTG+TGG - chr6_4:84225446-84225465 Msa1000880:intron 45.0%
TGGTGGAAACTAAGCTTAGG+TGG - chr6_4:84226117-84226136 Msa1000880:CDS 45.0%
GTAGTAAGGAGTAGGCTAGA+TGG - chr6_4:84226173-84226192 Msa1000880:CDS 45.0%
TAAGGAGTAGGCTAGATGGA+GGG - chr6_4:84226177-84226196 Msa1000880:CDS 45.0%
GAGGGTAGTCAAATCACTAG+AGG - chr6_4:84226195-84226214 Msa1000880:CDS 45.0%
AGTCAAATCACTAGAGGCAG+AGG - chr6_4:84226201-84226220 Msa1000880:CDS 45.0%
CAAATTCCGCTACGCTTTAG+TGG + chr6_4:84227502-84227521 None:intergenic 45.0%
TGTAAAACAGAGCCACGAGA+AGG - chr6_4:84228002-84228021 Msa1000880:CDS 45.0%
GTAAAACAGAGCCACGAGAA+GGG - chr6_4:84228003-84228022 Msa1000880:CDS 45.0%
TAAAACAGAGCCACGAGAAG+GGG - chr6_4:84228004-84228023 Msa1000880:CDS 45.0%
TTAGAAAAGTGGGAGTGGAG+TGG - chr6_4:84228084-84228103 Msa1000880:CDS 45.0%
AAGGAAAAGGATCCAACCTC+AGG + chr6_4:84228336-84228355 None:intergenic 45.0%
GTATGTCTGCAAAACCACAC+TGG + chr6_4:84229340-84229359 None:intergenic 45.0%
AACTTCTTGCGTATCGCAGA+GGG - chr6_4:84229489-84229508 Msa1000880:intron 45.0%
CCCCTTATTAATGGGACCAT+TGG + chr6_4:84229575-84229594 None:intergenic 45.0%
CAGGTGGAACCCCTTATTAA+TGG + chr6_4:84229584-84229603 None:intergenic 45.0%
CATTAATAAGGGGTTCCACC+TGG - chr6_4:84229582-84229601 Msa1000880:CDS 45.0%
TGGGTGCAGATACCAGATAT+TGG - chr6_4:84229652-84229671 Msa1000880:intron 45.0%
TCAGCAGAAAATCGAGACTC+TGG + chr6_4:84229715-84229734 None:intergenic 45.0%
ACCCTCATATCAGAATGGAG+AGG + chr6_4:84229820-84229839 None:intergenic 45.0%
AAACAGTCATCCGATGATGC+AGG - chr6_4:84229989-84230008 Msa1000880:intron 45.0%
!! TGTGACCTCTGGAGAACTTT+TGG - chr6_4:84230012-84230031 Msa1000880:intron 45.0%
CTCTTCCAAAAGTTCTCCAG+AGG + chr6_4:84230020-84230039 None:intergenic 45.0%
CATGAAACTCGCGCTTTCTT+TGG + chr6_4:84230050-84230069 None:intergenic 45.0%
! CAAAGAAAGCGCGAGTTTCA+TGG - chr6_4:84230048-84230067 Msa1000880:CDS 45.0%
CGAAGGAAAAGAGAGGACAT+AGG - chr6_4:84230076-84230095 Msa1000880:CDS 45.0%
GCATTTCCTATTCCTTGCTG+AGG + chr6_4:84230193-84230212 None:intergenic 45.0%
! ATAGTTTGAAGCAGCTCACC+AGG + chr6_4:84230259-84230278 None:intergenic 45.0%
GCCCTTTCTACCATTACCAA+AGG - chr6_4:84230387-84230406 Msa1000880:intron 45.0%
CAACTTGACATTGCGTATGC+AGG + chr6_4:84230461-84230480 None:intergenic 45.0%
! ATGTCAAGTTGCCTCACCTA+AGG - chr6_4:84230470-84230489 Msa1000880:intron 45.0%
ACGAACAATTGCTGCTGGAT+CGG + chr6_4:84230590-84230609 None:intergenic 45.0%
AATTGTTCGTTGCGCTGCTT+TGG - chr6_4:84230600-84230619 Msa1000880:intron 45.0%
TATGCTTCCTGATGATCCTG+AGG - chr6_4:84230711-84230730 Msa1000880:intron 45.0%
ACACTTTCCTCAGGATCATC+AGG + chr6_4:84230721-84230740 None:intergenic 45.0%
! ATGATCCTGAGGAAAGTGTG+AGG - chr6_4:84230722-84230741 Msa1000880:intron 45.0%
CATATCCTCACACTTTCCTC+AGG + chr6_4:84230730-84230749 None:intergenic 45.0%
TCAATAAGCTTGAGTGAGGC+AGG - chr6_4:84230805-84230824 Msa1000880:CDS 45.0%
GTGGCAAACTCAGTTCATCA+AGG + chr6_4:84230834-84230853 None:intergenic 45.0%
GTCTGGGTGGATGATGTAAA+TGG + chr6_4:84230862-84230881 None:intergenic 45.0%
GCTGAGGAAATCAATTGCAG+AGG - chr6_4:84230924-84230943 Msa1000880:intron 45.0%
!! TATTAGGAGAGCGCTTCTTC+AGG - chr6_4:84230987-84231006 Msa1000880:intron 45.0%
TTTAAGAAGGCGGGAAGGAT+AGG + chr6_4:84231069-84231088 None:intergenic 45.0%
GATCATTTAAGAAGGCGGGA+AGG + chr6_4:84231074-84231093 None:intergenic 45.0%
! TGTGGGACAAAGAAGTGTAG+AGG - chr6_4:84231149-84231168 Msa1000880:intron 45.0%
! AAAATGGGTTCTTCCGGAAG+AGG - chr6_4:84231262-84231281 Msa1000880:CDS 45.0%
GATCTTCGTACCCATTCACT+AGG + chr6_4:84231333-84231352 None:intergenic 45.0%
TTATACGCCCTTTCCTTCGT+AGG - chr6_4:84231424-84231443 Msa1000880:intron 45.0%
AAAACCTCCTGTCTCAAGAC+AGG - chr6_4:84231491-84231510 Msa1000880:intron 45.0%
AAAACCTGTCTTGAGACAGG+AGG + chr6_4:84231498-84231517 None:intergenic 45.0%
TTCTAACATGTCCGAGCTTC+TGG + chr6_4:84231541-84231560 None:intergenic 45.0%
CTGAAAAGCAACAGGGTTCT+GGG - chr6_4:84231661-84231680 Msa1000880:intron 45.0%
TGAAAAGCAACAGGGTTCTG+GGG - chr6_4:84231662-84231681 Msa1000880:intron 45.0%
! TCTGGGGCTCAACAAATTGT+TGG - chr6_4:84231678-84231697 Msa1000880:intron 45.0%
TTGTCACTATCAGATAGCCC+TGG + chr6_4:84231720-84231739 None:intergenic 45.0%
TGTAACTTCTCCGAGAACTG+CGG + chr6_4:84231813-84231832 None:intergenic 45.0%
CTGTTCGCACCACTAAAAGT+TGG + chr6_4:84231855-84231874 None:intergenic 45.0%
TATACTCCTTCAGTGTGGAC+AGG - chr6_4:84231910-84231929 Msa1000880:intron 45.0%
AATGGAGAATCAGAAGCTGC+AGG + chr6_4:84231954-84231973 None:intergenic 45.0%
TACTAAACAGTTCCACCGAG+TGG - chr6_4:84232103-84232122 Msa1000880:intron 45.0%
! GATCTGGTTCATGTACCACT+CGG + chr6_4:84232121-84232140 None:intergenic 45.0%
GGTACATGAACCAGATCCTA+AGG - chr6_4:84232124-84232143 Msa1000880:intron 45.0%
GCATTGCTACACATAACGCA+TGG + chr6_4:84232493-84232512 None:intergenic 45.0%
ACTATCACTTGTGCTGAACC+TGG + chr6_4:84232518-84232537 None:intergenic 45.0%
GGTTCAGCACAAGTGATAGT+TGG - chr6_4:84232518-84232537 Msa1000880:intron 45.0%
! GTGATAGTTGGAGCATCTGA+TGG - chr6_4:84232530-84232549 Msa1000880:intron 45.0%
! GCCAAGTATTGCACCTTCTT+TGG + chr6_4:84232651-84232670 None:intergenic 45.0%
! TGGCCTTTTAAATTGCCCCA+TGG - chr6_4:84232667-84232686 Msa1000880:intron 45.0%
ATGTATAGCACCCAGAACTG+TGG - chr6_4:84232704-84232723 Msa1000880:intron 45.0%
GCATTCATCTATGGGATACG+AGG - chr6_4:84232726-84232745 Msa1000880:intron 45.0%
GTTAAAAGCTACTCCTGACG+AGG - chr6_4:84232769-84232788 Msa1000880:intron 45.0%
! CAGGGGCGTAATTACACTTT+GGG - chr6_4:84232850-84232869 Msa1000880:intron 45.0%
!! GAAGACAGAGAAGCATTTGG+AGG + chr6_4:84232956-84232975 None:intergenic 45.0%
CTTCTCTGTCTTCAACCACT+AGG - chr6_4:84232963-84232982 Msa1000880:intron 45.0%
! TCTTGTACGAACAGGTACTG+AGG - chr6_4:84233372-84233391 Msa1000880:intron 45.0%
CAGAAATGTCCGATATGCCT+TGG - chr6_4:84233417-84233436 Msa1000880:intron 45.0%
CTTACTTGAAGGTTTGGCCA+AGG + chr6_4:84233444-84233463 None:intergenic 45.0%
CTTGGATCTGACTGAGAAGT+TGG + chr6_4:84233467-84233486 None:intergenic 45.0%
CCAGTCAATAAATCACCACC+TGG + chr6_4:84233575-84233594 None:intergenic 45.0%
CCAGGTGGTGATTTATTGAC+TGG - chr6_4:84233572-84233591 Msa1000880:intron 45.0%
! GGTGGTGATTTATTGACTGG+GGG - chr6_4:84233575-84233594 Msa1000880:intron 45.0%
TACGTCGATGGGATCATTAC+AGG - chr6_4:84233612-84233631 Msa1000880:intron 45.0%
GGACCAAACCTAAAAGGAGT+TGG - chr6_4:84233747-84233766 Msa1000880:intron 45.0%
! GGAATCTGTACCTTTTCCAG+TGG - chr6_4:84233847-84233866 Msa1000880:intron 45.0%
TAACAGGAGACCACTGGAAA+AGG + chr6_4:84233860-84233879 None:intergenic 45.0%
!! GGAAGGTATTGAGGAGAAAC+TGG + chr6_4:84233947-84233966 None:intergenic 45.0%
!! AATTGCCTTTGGTGTCAGCT+TGG + chr6_4:84234048-84234067 None:intergenic 45.0%
AATAGAATCGCGATGGCAAC+CGG + chr6_4:84234096-84234115 None:intergenic 45.0%
CAGACACAATAGAATCGCGA+TGG + chr6_4:84234103-84234122 None:intergenic 45.0%
TCGCGATTCTATTGTGTCTG+TGG - chr6_4:84234103-84234122 Msa1000880:CDS 45.0%
CACTTGAGAGTAGAAGTCTC+TGG + chr6_4:84234145-84234164 None:intergenic 45.0%
CAGAGACTTCTACTCTCAAG+TGG - chr6_4:84234143-84234162 Msa1000880:CDS 45.0%
CTACTCTCAAGTGGTAGAGA+TGG - chr6_4:84234152-84234171 Msa1000880:CDS 45.0%
ACTCTCAAGTGGTAGAGATG+GGG - chr6_4:84234154-84234173 Msa1000880:CDS 45.0%
! TGGCCTGATGATTTGTCTTG+AGG - chr6_4:84234296-84234315 Msa1000880:CDS 45.0%
! GGCCTGATGATTTGTCTTGA+GGG - chr6_4:84234297-84234316 Msa1000880:CDS 45.0%
TGCCCTCAAGACAAATCATC+AGG + chr6_4:84234302-84234321 None:intergenic 45.0%
!! ATTAAAAAATTATTTCAATT+AGG + chr6_4:84225659-84225678 None:intergenic 5.0%
TTTATCAGACCGCGGTAGAC+TGG - chr6_4:84225374-84225393 Msa1000880:intron 50.0%
! AGGTGGTTTGGGCATGTAGA+AGG - chr6_4:84226134-84226153 Msa1000880:CDS 50.0%
GTAAGGAGTAGGCTAGATGG+AGG - chr6_4:84226176-84226195 Msa1000880:CDS 50.0%
ATGCGACCAACCACACATAG+TGG - chr6_4:84226328-84226347 Msa1000880:CDS 50.0%
TGCGACCAACCACACATAGT+GGG - chr6_4:84226329-84226348 Msa1000880:CDS 50.0%
!! AGCGGATTGCGGAACAATAG+CGG + chr6_4:84227531-84227550 None:intergenic 50.0%
AAAACAGAGCCACGAGAAGG+GGG - chr6_4:84228005-84228024 Msa1000880:CDS 50.0%
ACTCTGTTATCTGGCACCTG+AGG - chr6_4:84228317-84228336 Msa1000880:CDS 50.0%
TGTTATCTGGCACCTGAGGT+TGG - chr6_4:84228321-84228340 Msa1000880:CDS 50.0%
! TGCTTTAGGCTAGACACCTG+AGG - chr6_4:84228659-84228678 Msa1000880:CDS 50.0%
TAATCCTTCCAGCGTGTCAC+TGG - chr6_4:84228849-84228868 Msa1000880:CDS 50.0%
TGAAAATGGAGGGGAGATGC+AGG - chr6_4:84228977-84228996 Msa1000880:CDS 50.0%
!! TGCCCCTCTAAAGCCATCTA+TGG - chr6_4:84229010-84229029 Msa1000880:CDS 50.0%
GTTCAGCGATTACACACCTG+AGG + chr6_4:84229433-84229452 None:intergenic 50.0%
! CAAATAGTGGTTGGCCCTCA+AGG + chr6_4:84229460-84229479 None:intergenic 50.0%
CAACTTCTTGCGTATCGCAG+AGG - chr6_4:84229488-84229507 Msa1000880:intron 50.0%
! ACTATGCCAGAGTGCTTTCC+AGG - chr6_4:84229943-84229962 Msa1000880:intron 50.0%
!! GTATCTCCTGGAAAGCACTC+TGG + chr6_4:84229952-84229971 None:intergenic 50.0%
AGAGGTCACACCTGCATCAT+CGG + chr6_4:84230002-84230021 None:intergenic 50.0%
CGAGTTTCATGGACTCACGA+AGG - chr6_4:84230059-84230078 Msa1000880:CDS 50.0%
GGACTCACGAAGGAAAAGAG+AGG - chr6_4:84230069-84230088 Msa1000880:CDS 50.0%
! TCAAGTTGCCTCACCTAAGG+AGG - chr6_4:84230473-84230492 Msa1000880:intron 50.0%
CAAGTTGCCTCACCTAAGGA+GGG - chr6_4:84230474-84230493 Msa1000880:intron 50.0%
GGCAGCTGTACTCTTGTTGA+AGG - chr6_4:84230495-84230514 Msa1000880:intron 50.0%
GTGACATTCTGCCCATAGTG+CGG - chr6_4:84230632-84230651 Msa1000880:intron 50.0%
TGACATTCTGCCCATAGTGC+GGG - chr6_4:84230633-84230652 Msa1000880:intron 50.0%
AAGCTTGCGCTCACTGCTTA+TGG - chr6_4:84230769-84230788 Msa1000880:CDS 50.0%
ATTTCCTCAGCTGCAGAAGC+TGG + chr6_4:84230915-84230934 None:intergenic 50.0%
! AGAGCGCTTCTTCAGGACAT+CGG - chr6_4:84230994-84231013 Msa1000880:intron 50.0%
CATATGAATCCACTGCACCC+AGG + chr6_4:84231389-84231408 None:intergenic 50.0%
! AAGGGCGTATAACAGGAGCA+AGG + chr6_4:84231416-84231435 None:intergenic 50.0%
! CGAAGGAAAGGGCGTATAAC+AGG + chr6_4:84231423-84231442 None:intergenic 50.0%
CAGGTTGCCTACGAAGGAAA+GGG + chr6_4:84231434-84231453 None:intergenic 50.0%
ACAGGTTGCCTACGAAGGAA+AGG + chr6_4:84231435-84231454 None:intergenic 50.0%
GAGATACAGGTTGCCTACGA+AGG + chr6_4:84231440-84231459 None:intergenic 50.0%
CTTGGAGAACTCCAGAAGCT+CGG - chr6_4:84231527-84231546 Msa1000880:intron 50.0%
AGCTGGGCTGAAAAGCAACA+GGG - chr6_4:84231654-84231673 Msa1000880:intron 50.0%
GCTGAAAAGCAACAGGGTTC+TGG - chr6_4:84231660-84231679 Msa1000880:intron 50.0%
TATCAGATAGCCCTGGCTGT+TGG + chr6_4:84231713-84231732 None:intergenic 50.0%
ACAACGTGATCCGCAGTTCT+CGG - chr6_4:84231800-84231819 Msa1000880:intron 50.0%
AGTGTGGACAGGAGAGGAAT+GGG - chr6_4:84231921-84231940 Msa1000880:intron 50.0%
CATCCATCCCTGATTCTGGT+TGG - chr6_4:84232279-84232298 Msa1000880:intron 50.0%
CGACCCTGATACAAACCAGT+TGG + chr6_4:84232828-84232847 None:intergenic 50.0%
GTTTGTATCAGGGTCGTCCA+GGG - chr6_4:84232832-84232851 Msa1000880:intron 50.0%
TTTGTATCAGGGTCGTCCAG+GGG - chr6_4:84232833-84232852 Msa1000880:intron 50.0%
CCAAAGTGTAATTACGCCCC+TGG + chr6_4:84232852-84232871 None:intergenic 50.0%
! CCAGGGGCGTAATTACACTT+TGG - chr6_4:84232849-84232868 Msa1000880:intron 50.0%
!! GAGAAGCATTTGGAGGAGGA+AGG + chr6_4:84232949-84232968 None:intergenic 50.0%
!! GACAGAGAAGCATTTGGAGG+AGG + chr6_4:84232953-84232972 None:intergenic 50.0%
CACATAAACAAGGGGCCTAG+TGG + chr6_4:84232981-84233000 None:intergenic 50.0%
! CACTAGGCCCCTTGTTTATG+TGG - chr6_4:84232979-84232998 Msa1000880:intron 50.0%
ACCCGCAGCCACATAAACAA+GGG + chr6_4:84232990-84233009 None:intergenic 50.0%
AACCCGCAGCCACATAAACA+AGG + chr6_4:84232991-84233010 None:intergenic 50.0%
!! GTACGAACAGGTACTGAGGA+CGG - chr6_4:84233376-84233395 Msa1000880:intron 50.0%
ACGTGCGAATACCAGGAAGA+CGG + chr6_4:84233541-84233560 None:intergenic 50.0%
GGAAGTAACGTGCGAATACC+AGG + chr6_4:84233548-84233567 None:intergenic 50.0%
ACGTTACTTCCCTTACCAGG+TGG - chr6_4:84233557-84233576 Msa1000880:intron 50.0%
TGCAACCAAGCTGACACCAA+AGG - chr6_4:84234040-84234059 Msa1000880:intron 50.0%
GGACAGTTCTACTAGCTACC+AGG + chr6_4:84234244-84234263 None:intergenic 50.0%
AACGACGCAAGTGTCAGCGT+CGG - chr6_4:84224789-84224808 Msa1000880:three_prime_UTR 55.0%
ACAACATCGCCAGTCTACCG+CGG + chr6_4:84225386-84225405 None:intergenic 55.0%
CTAGAGGCAGAGGAAGACCT+TGG - chr6_4:84226211-84226230 Msa1000880:CDS 55.0%
GCTGTCCCACTAAAGCGTAG+CGG - chr6_4:84227493-84227512 Msa1000880:CDS 55.0%
CATGACAAACCCCCTTCTCG+TGG + chr6_4:84228017-84228036 None:intergenic 55.0%
CACGAGAAGGGGGTTTGTCA+TGG - chr6_4:84228015-84228034 Msa1000880:CDS 55.0%
AAGTGGGAGTGGAGTGGAGA+AGG - chr6_4:84228090-84228109 Msa1000880:CDS 55.0%
TTCACCAGTGACACGCTGGA+AGG + chr6_4:84228856-84228875 None:intergenic 55.0%
AAATGGAGGGGAGATGCAGG+TGG - chr6_4:84228980-84228999 Msa1000880:CDS 55.0%
TCTGGGTCATGAGTATGGCC+AGG + chr6_4:84229603-84229622 None:intergenic 55.0%
GATGATGCAGGTGTGACCTC+TGG - chr6_4:84230001-84230020 Msa1000880:intron 55.0%
ATTCCTTGCTGAGGACCAGC+TGG + chr6_4:84230184-84230203 None:intergenic 55.0%
GCTGGTCCTCAGCAAGGAAT+AGG - chr6_4:84230184-84230203 Msa1000880:intron 55.0%
AGAGTACAGCTGCCCTCCTT+AGG + chr6_4:84230489-84230508 None:intergenic 55.0%
GCGCAACGAACAATTGCTGC+TGG + chr6_4:84230595-84230614 None:intergenic 55.0%
GGAGGAAACTCCCGCACTAT+GGG + chr6_4:84230646-84230665 None:intergenic 55.0%
AGGAGGAAACTCCCGCACTA+TGG + chr6_4:84230647-84230666 None:intergenic 55.0%
TACATCATCCACCCAGACCC+CGG - chr6_4:84230864-84230883 Msa1000880:CDS 55.0%
CATCATTCTTCCCGGGGTCT+GGG + chr6_4:84230878-84230897 None:intergenic 55.0%
TCATCATTCTTCCCGGGGTC+TGG + chr6_4:84230879-84230898 None:intergenic 55.0%
ATGTCCAGCTTCTGCAGCTG+AGG - chr6_4:84230908-84230927 Msa1000880:intron 55.0%
TGCTGCTAGTAGTGAGAGCC+TGG - chr6_4:84231368-84231387 Msa1000880:intron 55.0%
GCTGCTAGTAGTGAGAGCCT+GGG - chr6_4:84231369-84231388 Msa1000880:intron 55.0%
GAGCTGGGCTGAAAAGCAAC+AGG - chr6_4:84231653-84231672 Msa1000880:intron 55.0%
GAACTGGCATCCAACAGCCA+GGG - chr6_4:84231700-84231719 Msa1000880:intron 55.0%
TCCTTCAGTGTGGACAGGAG+AGG - chr6_4:84231915-84231934 Msa1000880:intron 55.0%
TCCTCTCCTGTCCACACTGA+AGG + chr6_4:84231919-84231938 None:intergenic 55.0%
CAGTGTGGACAGGAGAGGAA+TGG - chr6_4:84231920-84231939 Msa1000880:intron 55.0%
GGAGAATCAGAAGCTGCAGG+AGG + chr6_4:84231951-84231970 None:intergenic 55.0%
CTGGTTCATGTACCACTCGG+TGG + chr6_4:84232118-84232137 None:intergenic 55.0%
CGGACATCCATCCCTGATTC+TGG - chr6_4:84232275-84232294 Msa1000880:intron 55.0%
CCTCCAACCAGAATCAGGGA+TGG + chr6_4:84232285-84232304 None:intergenic 55.0%
! CCATCCCTGATTCTGGTTGG+AGG - chr6_4:84232282-84232301 Msa1000880:intron 55.0%
GTGGCCTCCAACCAGAATCA+GGG + chr6_4:84232289-84232308 None:intergenic 55.0%
! ATTCTGGTTGGAGGCCACGT+GGG - chr6_4:84232291-84232310 Msa1000880:intron 55.0%
AGACAGCTGAACGATGCTCC+TGG + chr6_4:84232334-84232353 None:intergenic 55.0%
ATAACGCATGGCTTCCCTCC+AGG + chr6_4:84232481-84232500 None:intergenic 55.0%
TACGCCTTGTCCCTAGCATC+AGG - chr6_4:84232794-84232813 Msa1000880:intron 55.0%
ACGCCTTGTCCCTAGCATCA+GGG - chr6_4:84232795-84232814 Msa1000880:intron 55.0%
GGAACAAGGCCCTGATGCTA+GGG + chr6_4:84232807-84232826 None:intergenic 55.0%
TGGAACAAGGCCCTGATGCT+AGG + chr6_4:84232808-84232827 None:intergenic 55.0%
!! CATCAGGGCCTTGTTCCAAC+TGG - chr6_4:84232810-84232829 Msa1000880:intron 55.0%
GGTTTGTATCAGGGTCGTCC+AGG - chr6_4:84232831-84232850 Msa1000880:intron 55.0%
! GCCCCTTGTTTATGTGGCTG+CGG - chr6_4:84232985-84233004 Msa1000880:intron 55.0%
CCCGCAGCCACATAAACAAG+GGG + chr6_4:84232989-84233008 None:intergenic 55.0%
! CCCCTTGTTTATGTGGCTGC+GGG - chr6_4:84232986-84233005 Msa1000880:intron 55.0%
AGAGAATGCTAGCTGCCACC+AGG - chr6_4:84233036-84233055 Msa1000880:intron 55.0%
ATGCTAGCTGCCACCAGGTA+TGG - chr6_4:84233041-84233060 Msa1000880:intron 55.0%
TGCTAGCTGCCACCAGGTAT+GGG - chr6_4:84233042-84233061 Msa1000880:intron 55.0%
GTGCGAATACCAGGAAGACG+GGG + chr6_4:84233539-84233558 None:intergenic 55.0%
CGTGCGAATACCAGGAAGAC+GGG + chr6_4:84233540-84233559 None:intergenic 55.0%
CGCACGTTACTTCCCTTACC+AGG - chr6_4:84233554-84233573 Msa1000880:intron 55.0%
GGTGTCAGCTTGGTTGCAAG+AGG + chr6_4:84234038-84234057 None:intergenic 55.0%
TGGTAGAGATGGGGCCATCA+AGG - chr6_4:84234163-84234182 Msa1000880:CDS 55.0%
GAGATGGGGCCATCAAGGTT+TGG - chr6_4:84234168-84234187 Msa1000880:CDS 55.0%
GCACTTCACCAGTGACACGC+TGG + chr6_4:84228860-84228879 None:intergenic 60.0%
GGGTCATGAGTATGGCCAGG+TGG + chr6_4:84229600-84229619 None:intergenic 60.0%
AGTCCAGCTGGTCCTCAGCA+AGG - chr6_4:84230178-84230197 Msa1000880:intron 60.0%
ACAGCTGCCCTCCTTAGGTG+AGG + chr6_4:84230484-84230503 None:intergenic 60.0%
ACATCATCCACCCAGACCCC+GGG - chr6_4:84230865-84230884 Msa1000880:CDS 60.0%
TAGTGAGAGCCTGGGTGCAG+TGG - chr6_4:84231377-84231396 Msa1000880:intron 60.0%
GGAACTGGCATCCAACAGCC+AGG - chr6_4:84231699-84231718 Msa1000880:intron 60.0%
CGTGGCCTCCAACCAGAATC+AGG + chr6_4:84232290-84232309 None:intergenic 60.0%
! GATTCTGGTTGGAGGCCACG+TGG - chr6_4:84232290-84232309 Msa1000880:intron 60.0%
! TTCTGGTTGGAGGCCACGTG+GGG - chr6_4:84232292-84232311 Msa1000880:intron 60.0%
TGTGCAACCAACACCCCACG+TGG + chr6_4:84232308-84232327 None:intergenic 60.0%
!! GGTGTTGGTTGCACACCTCC+AGG - chr6_4:84232313-84232332 Msa1000880:intron 60.0%
CAGCTGAACGATGCTCCTGG+AGG + chr6_4:84232331-84232350 None:intergenic 60.0%
AGGCCCTGATGCTAGGGACA+AGG + chr6_4:84232801-84232820 None:intergenic 60.0%
GTCCGATATGCCTTGGGCCT+TGG - chr6_4:84233424-84233443 Msa1000880:intron 60.0%
GGCCAAGGCCCAAGGCATAT+CGG + chr6_4:84233429-84233448 None:intergenic 60.0%
GAAGGTTTGGCCAAGGCCCA+AGG + chr6_4:84233437-84233456 None:intergenic 60.0%
ATACCAGGAAGACGGGGAGG+AGG + chr6_4:84233533-84233552 None:intergenic 60.0%
CGAATACCAGGAAGACGGGG+AGG + chr6_4:84233536-84233555 None:intergenic 60.0%
CTGGGGTAACAGGAGACCAC+TGG + chr6_4:84233866-84233885 None:intergenic 60.0%
GCAGCTGCGCGAATTGCCTT+TGG + chr6_4:84234059-84234078 None:intergenic 60.0%
ATGGCAACCGGCGGAATCAG+TGG + chr6_4:84234084-84234103 None:intergenic 60.0%
AGAATCGCGATGGCAACCGG+CGG + chr6_4:84234093-84234112 None:intergenic 60.0%
CATTCTTCCCGGGGTCTGGG+TGG + chr6_4:84230875-84230894 None:intergenic 65.0%
TTGGAGGCCACGTGGGGTGT+TGG - chr6_4:84232298-84232317 Msa1000880:intron 65.0%
GACAAGGCGTAGCCCTCGTC+AGG + chr6_4:84232785-84232804 None:intergenic 65.0%
GAACCTCCTCCCCGTCTTCC+TGG - chr6_4:84233527-84233546 Msa1000880:intron 65.0%
!! GCTGCTGCCACTGATTCCGC+CGG - chr6_4:84234074-84234093 Msa1000880:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 84224617 84234471 84224617 ID=Msa1000880;Name=Msa1000880
chr6_4 mRNA 84224617 84234471 84224617 ID=Msa1000880-mRNA-1;Parent=Msa1000880;Name=Msa1000880-mRNA-1;_AED=0.05;_eAED=0.05;_QI=152|1|1|1|0.90|0.83|12|253|1536
chr6_4 exon 84224617 84224724 84224617 ID=Msa1000880-mRNA-1:exon:16400;Parent=Msa1000880-mRNA-1
chr6_4 exon 84224747 84225068 84224747 ID=Msa1000880-mRNA-1:exon:16399;Parent=Msa1000880-mRNA-1
chr6_4 exon 84225267 84225366 84225267 ID=Msa1000880-mRNA-1:exon:16398;Parent=Msa1000880-mRNA-1
chr6_4 exon 84225455 84225702 84225455 ID=Msa1000880-mRNA-1:exon:16397;Parent=Msa1000880-mRNA-1
chr6_4 exon 84226031 84229150 84226031 ID=Msa1000880-mRNA-1:exon:16396;Parent=Msa1000880-mRNA-1
chr6_4 exon 84229251 84229427 84229251 ID=Msa1000880-mRNA-1:exon:16395;Parent=Msa1000880-mRNA-1
chr6_4 exon 84229547 84229652 84229547 ID=Msa1000880-mRNA-1:exon:16394;Parent=Msa1000880-mRNA-1
chr6_4 exon 84230040 84230119 84230040 ID=Msa1000880-mRNA-1:exon:16393;Parent=Msa1000880-mRNA-1
chr6_4 exon 84230750 84230910 84230750 ID=Msa1000880-mRNA-1:exon:16392;Parent=Msa1000880-mRNA-1
chr6_4 exon 84231052 84231097 84231052 ID=Msa1000880-mRNA-1:exon:16391;Parent=Msa1000880-mRNA-1
chr6_4 exon 84231209 84231331 84231209 ID=Msa1000880-mRNA-1:exon:16390;Parent=Msa1000880-mRNA-1
chr6_4 exon 84234047 84234471 84234047 ID=Msa1000880-mRNA-1:exon:16389;Parent=Msa1000880-mRNA-1
chr6_4 five_prime_UTR 84234320 84234471 84234320 ID=Msa1000880-mRNA-1:five_prime_utr;Parent=Msa1000880-mRNA-1
chr6_4 CDS 84234047 84234319 84234047 ID=Msa1000880-mRNA-1:cds;Parent=Msa1000880-mRNA-1
chr6_4 CDS 84231209 84231331 84231209 ID=Msa1000880-mRNA-1:cds;Parent=Msa1000880-mRNA-1
chr6_4 CDS 84231052 84231097 84231052 ID=Msa1000880-mRNA-1:cds;Parent=Msa1000880-mRNA-1
chr6_4 CDS 84230750 84230910 84230750 ID=Msa1000880-mRNA-1:cds;Parent=Msa1000880-mRNA-1
chr6_4 CDS 84230040 84230119 84230040 ID=Msa1000880-mRNA-1:cds;Parent=Msa1000880-mRNA-1
chr6_4 CDS 84229547 84229652 84229547 ID=Msa1000880-mRNA-1:cds;Parent=Msa1000880-mRNA-1
chr6_4 CDS 84229251 84229427 84229251 ID=Msa1000880-mRNA-1:cds;Parent=Msa1000880-mRNA-1
chr6_4 CDS 84226031 84229150 84226031 ID=Msa1000880-mRNA-1:cds;Parent=Msa1000880-mRNA-1
chr6_4 CDS 84225455 84225702 84225455 ID=Msa1000880-mRNA-1:cds;Parent=Msa1000880-mRNA-1
chr6_4 CDS 84225267 84225366 84225267 ID=Msa1000880-mRNA-1:cds;Parent=Msa1000880-mRNA-1
chr6_4 CDS 84224892 84225068 84224892 ID=Msa1000880-mRNA-1:cds;Parent=Msa1000880-mRNA-1
chr6_4 three_prime_UTR 84224747 84224891 84224747 ID=Msa1000880-mRNA-1:three_prime_utr;Parent=Msa1000880-mRNA-1
chr6_4 three_prime_UTR 84224617 84224724 84224617 ID=Msa1000880-mRNA-1:three_prime_utr;Parent=Msa1000880-mRNA-1
Gene Sequence

>Msa1000880

ATGGGGAACAAAATCGCGCGAACGACGCAAGTGTCAGCGTCGGAGTATTACCTACACGAGTTACCATCAACGTATAATCTAGTTTTGAAAGAAGTTCTTGGACGCGGTCGATTCTTCAAATCGATTCAGTGTAAGCACGATGAAGGATTGGTTCTTGTTAAGGTTTATTTCAAACGCGGTGATTCTATTAATCTTTCGGAGTATGAACGGAGGATTTCGATGATTAAGGAGATTTTTAGTAGTATTGATCATCCTCATGTTTGGCCTTTTCAGTTTTGGCAAGAAACAGATAAAGCAGCTTATCTTTTGAGGCAATATTTCTTCCATAATTTGCATGATCGACTAAGCACTCGACCTTTTCTTAGTTTCGTTGAGAAGAAATGGTTGGCTTTTCAGTTGCTTTTAGCTGTAAAACAGAGCCACGAGAAGGGGGTTTGTCATGGTGATATCAAGTGTGAAAATGTGCTAATTACGTCCTCAAATTGGCTTTACCTTGCTGACTTTGCTTCTTTCAAACCCACATACATACCGTATGACGATCCATCTGATTTCTCTTTTTTCTTTGACACGGGAGGAAGAAGACTCTGTTATCTGGCACCTGAGAGATTTTATGAAAATGGAGGGGAGATGCAGGTGGCACAAGATGCCCCTCTAAAGCCATCTATGGATTTATTTGCTGTTGGGTGTGTAATCGCTGAACTTTTCCTTGAGGGCCAACCACTATTTGAACTGTCTCAACTTCTTGCGTATCGCAGAGGGCAACATGATCCAAGTCAACATCTTGAAAAAATACCAGATATTGGAATCCGCAAGATGATTCAGCACATGATTCAGTTAGAACCAGAGTCTCGATTTTCTGCTGAAATGTATCTAAAGGAATACGCCGGAGTTGTATTCCCTACCTATTTTTCACCATTTCTGCATGATTTTTACCGTTGCTGGAGTCCTCTCCATTCTGATATGAGGGTTTTACTATGCCAGAGTGCTTTCCAGGAGATACTTAAACAAATGATGAACAAACAGTCATCCGATGATGCAGGTGTGACCTCTGGAGAACTTTTGGAAGAGATGGTTGCCAAAGAAAGCGCGAGTTTCATGGACTCACGAAGGAAAAGAGAGGACATAGGCAAAGGCTTAGTTCATGATCAGTATGAACTTCTTGGTGATATTAATAGCTTACTGAGGGATGCTAAAAATAATAATAAGAGTCCAGCTGGTCCTCAGCAAGGAATAGGAAATGCAGAGAATTCAACCTTTCCTGAAAATCTAAAAAGTTTGCAGTCTCCTGGTGAGCTGCTTCAAACTATATCGAATGCATTTCGAGGAAATGATCATCCCTTTTTAAAAAGTATTACTATGAAAGACTTAAATTCATTGATGTCCGAATATGATAGTCAGTCGGATACATTTGGAACGCCCTTTCTACCATTACCAAAGGATACTATGAGATGTGAAGGCATGGTTTTGATAACTTCTTTGCTCTGCTCCTGCATACGCAATGTCAAGTTGCCTCACCTAAGGAGGGCAGCTGTACTCTTGTTGAAGGCTTCTGCCCTATATATTGATGATGAAGATCGTTTGCAGCGTGTGATTCCATATGTGATTGCAATGCTTTCCGATCCAGCAGCAATTGTTCGTTGCGCTGCTTTGGAGACTTTGTGTGACATTCTGCCCATAGTGCGGGAGTTTCCTCCTAGTGATGCAAAGATATTTCCTGAGTATATTTTTCCTATGCTTTCTATGCTTCCTGATGATCCTGAGGAAAGTGTGAGGATATGTTATGCTAGCAACATAGCTAAGCTTGCGCTCACTGCTTATGGATTCTTGATACACTCAATAAGCTTGAGTGAGGCAGGTGTCCTTGATGAACTGAGTTTGCCACAGAAGCCATTTACATCATCCACCCAGACCCCGGGAAGAATGATGATAAATAGTGATGTCCAGCTTCTGCAGCTGAGGAAATCAATTGCAGAGGTTGTTCAAGAACTTGTTATGGGTCCAAAGCAAACGCCAAATATTAGGAGAGCGCTTCTTCAGGACATCGGTAAACTTTGCTACTTTTTTGGTGTGAGACAGAGTAATGACACTCTCTTACCTATCCTTCCCGCCTTCTTAAATGATCGAGATGAGCAATTAAGGACGGTATTCTATGAGAAGATTGTTTATGTTTGCTTTTTTGTGGGACAAAGAAGTGTAGAGGAATATCTATTACCTTACATTGAGCAAGCTTTAAGTGACATGACAGAAGCTGTCATTGTTAGAGCCTTAGAATGTTTGGCTATTCTATGCAAAAATGGGTTCTTCCGGAAGAGGATATTGCTTCAAATGATAGAGCGCGCCTTTGCTTTATTGTGTTATCCTAGTGAATGGGTACGAAGATCAGTTGTGTCTTTCATTGCTGCTAGTAGTGAGAGCCTGGGTGCAGTGGATTCATATGTTTTCCTTGCTCCTGTTATACGCCCTTTCCTTCGTAGGCAACCTGTATCTCTTGCTTCAGAGAAAGCTCTTTTGTCATGTTTAAAACCTCCTGTCTCAAGACAGGTTTTCTATGAAGTCTTGGAGAACTCCAGAAGCTCGGACATGTTAGAAAGACAGAGAAAGATATGGTATAGTTCATCACAGTCTAAAATATGGGAAATGGATTTACTTAAAAAAGGAATTGATGAGTTGGACTCATTAAAGAGCTGGGCTGAAAAGCAACAGGGTTCTGGGGCTCAACAAATTGTTGGAACTGGCATCCAACAGCCAGGGCTATCTGATAGTGACAAAGCTGAGTCTAAATTTAGAGATATGGGGGCCTTTATGCATAATGATAGCAACATGTTGGGACAACGTGATCCGCAGTTCTCGGAGAAGTTACAGTTTTCAGGATTTATGTCACCAACTTTTAGTGGTGCGAACAGTTTGACATATGACAAGCCATCTGAAGGCATACCTTTATACTCCTTCAGTGTGGACAGGAGAGGAATGGGAATACCTCCTGCAGCTTCTGATTCTCCATTACAAATGAATTCTCTGGGTGTTAGTTCATCTGCAATGCCTTGGGTTAATCCACTTAGCAAGTCCTTTAATTTGGCCAATTCAGTTCCATCACCAAAGCTTTTTTCAGGTTCTTTTAGCATCAGCAATGGTACTAAACAGTTCCACCGAGTGGTACATGAACCAGATCCTAAGGAAAATGAGACAGTCTTTCTCAATAGCACATTTCAAGACGTCGGACTATCTTCTAATAATAAAGGTACATCAATTTCACTAGAAGAGGCTACTACCCAAGCTGATTTATCAGGATTTCAATCTTTTGCTCGGACATCCATCCCTGATTCTGGTTGGAGGCCACGTGGGGTGTTGGTTGCACACCTCCAGGAGCATCGTTCAGCTGTCTGCGACATAGCTGTTTCTTCCGACAATAGCTTTTTTGTGAGTGCATCCGATGACTCAACAGTCAAGATTTGGGATTCCAAAAAGCTGGAAAAAGACATTTCCTTCAGGTCAAAGCTAACTTATCACCTGGAGGGAAGCCATGCGTTATGTGTAGCAATGCTTCCAGGTTCAGCACAAGTGATAGTTGGAGCATCTGATGGATTTATTCATATGTTTTCTGTTGATCATATCTCTAGAGGTCTAGGAAATGTTGTTGAGAAGTATTCTGGTATTGCTGATGTCACAAAGAAGGATACCAAAGAAGGTGCAATACTTGGCCTTTTAAATTGCCCCATGGATAATAACAGCATTATGTATAGCACCCAGAACTGTGGCATTCATCTATGGGATACGAGGTCAAATTCCAATTCTTGGACGTTAAAAGCTACTCCTGACGAGGGCTACGCCTTGTCCCTAGCATCAGGGCCTTGTTCCAACTGGTTTGTATCAGGGTCGTCCAGGGGCGTAATTACACTTTGGGATCTGAGATTTCTTGTACCTGTAAACTCTTGGAAGTATTCTCTTGCTTGTCCTATAGAAAAGATTTGTCTCTTCCTTCCTCCTCCAAATGCTTCTCTGTCTTCAACCACTAGGCCCCTTGTTTATGTGGCTGCGGGTTGCAATGAAGTTTCTCTTTGGAATGCAGAGAATGCTAGCTGCCACCAGGTACTGAGGACGGCCAATTATGACAGTGATGCAGAAATGTCCGATATGCCTTGGGCCTTGGCCAAACCTTCAAGTAAGCCAACTTCTCAGTCAGATCCAAGACGAAATGTTAATCGCAAGTACAGAGTTGATGAGCTAAATGAACCTCCTCCCCGTCTTCCTGGTATTCGCACGTTACTTCCCTTACCAGGTGGTGATTTATTGACTGGGGGCACTGATTTAAAGATACGTCGATGGGATCATTACAGTCCTGACAAAAGCTACTGCATTTGTGGACCAAACCTAAAAGGAGTTGGAAATGACGACTTTTACGAAACAAAATCTAGTTTTGGAGTGCAAGTTGTACAGGAGACAAAAAGGCGGCCTCTTGCAACCAAGCTGACACCAAAGGCAATTCGCGCAGCTGCTGCCACTGATTCCGCCGGTTGCCATCGCGATTCTATTGTGTCTGTGGCTTCAGTTAAGTTAAACCAGAGACTTCTACTCTCAAGTGGTAGAGATGGGGCCATCAAGGTTTGGAAGTAA
Protein sequence

>Msa1000880

MGNKIARTTQVSASEYYLHELPSTYNLVLKEVLGRGRFFKSIQCKHDEGLVLVKVYFKRGDSINLSEYERRISMIKEIFSSIDHPHVWPFQFWQETDKAAYLLRQYFFHNLHDRLSTRPFLSFVEKKWLAFQLLLAVKQSHEKGVCHGDIKCENVLITSSNWLYLADFASFKPTYIPYDDPSDFSFFFDTGGRRLCYLAPERFYENGGEMQVAQDAPLKPSMDLFAVGCVIAELFLEGQPLFELSQLLAYRRGQHDPSQHLEKIPDIGIRKMIQHMIQLEPESRFSAEMYLKEYAGVVFPTYFSPFLHDFYRCWSPLHSDMRVLLCQSAFQEILKQMMNKQSSDDAGVTSGELLEEMVAKESASFMDSRRKREDIGKGLVHDQYELLGDINSLLRDAKNNNKSPAGPQQGIGNAENSTFPENLKSLQSPGELLQTISNAFRGNDHPFLKSITMKDLNSLMSEYDSQSDTFGTPFLPLPKDTMRCEGMVLITSLLCSCIRNVKLPHLRRAAVLLLKASALYIDDEDRLQRVIPYVIAMLSDPAAIVRCAALETLCDILPIVREFPPSDAKIFPEYIFPMLSMLPDDPEESVRICYASNIAKLALTAYGFLIHSISLSEAGVLDELSLPQKPFTSSTQTPGRMMINSDVQLLQLRKSIAEVVQELVMGPKQTPNIRRALLQDIGKLCYFFGVRQSNDTLLPILPAFLNDRDEQLRTVFYEKIVYVCFFVGQRSVEEYLLPYIEQALSDMTEAVIVRALECLAILCKNGFFRKRILLQMIERAFALLCYPSEWVRRSVVSFIAASSESLGAVDSYVFLAPVIRPFLRRQPVSLASEKALLSCLKPPVSRQVFYEVLENSRSSDMLERQRKIWYSSSQSKIWEMDLLKKGIDELDSLKSWAEKQQGSGAQQIVGTGIQQPGLSDSDKAESKFRDMGAFMHNDSNMLGQRDPQFSEKLQFSGFMSPTFSGANSLTYDKPSEGIPLYSFSVDRRGMGIPPAASDSPLQMNSLGVSSSAMPWVNPLSKSFNLANSVPSPKLFSGSFSISNGTKQFHRVVHEPDPKENETVFLNSTFQDVGLSSNNKGTSISLEEATTQADLSGFQSFARTSIPDSGWRPRGVLVAHLQEHRSAVCDIAVSSDNSFFVSASDDSTVKIWDSKKLEKDISFRSKLTYHLEGSHALCVAMLPGSAQVIVGASDGFIHMFSVDHISRGLGNVVEKYSGIADVTKKDTKEGAILGLLNCPMDNNSIMYSTQNCGIHLWDTRSNSNSWTLKATPDEGYALSLASGPCSNWFVSGSSRGVITLWDLRFLVPVNSWKYSLACPIEKICLFLPPPNASLSSTTRPLVYVAAGCNEVSLWNAENASCHQVLRTANYDSDAEMSDMPWALAKPSSKPTSQSDPRRNVNRKYRVDELNEPPPRLPGIRTLLPLPGGDLLTGGTDLKIRRWDHYSPDKSYCICGPNLKGVGNDDFYETKSSFGVQVVQETKRRPLATKLTPKAIRAAAATDSAGCHRDSIVSVASVKLNQRLLLSSGRDGAIKVWK*