AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1147270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1147270 MtrunA17_Chr7g0234251 99.065 107 0 1 1 106 1 107 5.81e-75 216
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1147270 AT4G12970.1 64.557 79 23 2 30 105 26 102 1.80e-30 104

Find 46 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCATTACGGTCTCCATTA+TGG 0.235411 7_4:+26420199 Msa1147270:five_prime_UTR
ATAGTGATTGATTTGGTATT+TGG 0.269964 7_4:-26420179 None:intergenic
AAGAGTAGCATGAGTACTTT+TGG 0.271602 7_4:-26420500 None:intergenic
GGCAATCTAGTAATTCTAAT+TGG 0.288153 7_4:+26420221 Msa1147270:five_prime_UTR
AACTTTAGCTGCAAGAATTA+AGG 0.311122 7_4:-26420525 None:intergenic
GAAAATGAAACTTAACAAAT+AGG 0.322820 7_4:-26421664 None:intergenic
GATTGATTTGGTATTTGGTT+TGG 0.337786 7_4:-26420174 None:intergenic
GCTAACTCATAGGAAATTCT+AGG 0.342513 7_4:-26420245 None:intergenic
GTATTTGGTTTGGGTAATAA+TGG 0.363120 7_4:-26420164 None:intergenic
ATCATTACGGTCTCCATTAT+GGG 0.363194 7_4:+26420200 Msa1147270:five_prime_UTR
AATTACTAGATTGCCCATAA+TGG 0.364394 7_4:-26420213 None:intergenic
TTCAAACTTAGTTCTCTTTG+AGG 0.370756 7_4:-26421160 None:intergenic
TTCAATAGTAAAGAATCATT+TGG 0.376505 7_4:-26420138 None:intergenic
ATTGATTTGGTATTTGGTTT+GGG 0.382485 7_4:-26420173 None:intergenic
AGATAAAGATGAGGAAAGAT+AGG 0.392912 7_4:-26420380 None:intergenic
CGTAATGATAGTGATTGATT+TGG 0.395034 7_4:-26420186 None:intergenic
TTTGCAGGAATTGAAACAAA+AGG 0.418042 7_4:+26421115 Msa1147270:intron
AATTCTAGAAGATTGATGAT+TGG 0.426618 7_4:+26421315 Msa1147270:CDS
CAAACACATCTGTAGTGATA+AGG 0.436257 7_4:-26421438 None:intergenic
CAAATCAATCACTATCATTA+CGG 0.442614 7_4:+26420187 Msa1147270:five_prime_UTR
TCAAAGAGAACTAAGTTTGA+AGG 0.442646 7_4:+26421162 Msa1147270:CDS
AAACACATCTGTAGTGATAA+GGG 0.464798 7_4:-26421437 None:intergenic
GACTATAGTGGCTAACTCAT+AGG 0.467910 7_4:-26420255 None:intergenic
CTTGCAGCTAAAGTTATACA+AGG 0.476292 7_4:+26420533 Msa1147270:CDS
GTAGTGATAAGGGCTATTGA+TGG 0.486853 7_4:-26421427 None:intergenic
ACTAACAACTAATTAGAAGA+AGG 0.491013 7_4:-26421570 None:intergenic
TTGCAGGAATTGAAACAAAA+GGG 0.500483 7_4:+26421116 Msa1147270:intron
ATGGGGTCATTTCCCTCCAC+AGG 0.517268 7_4:-26421408 None:intergenic
TAGTGATAAGGGCTATTGAT+GGG 0.522192 7_4:-26421426 None:intergenic
AGTGACCATAAGAGATAGAC+TGG 0.525935 7_4:-26420330 None:intergenic
GAAAGATAGGTAAGATAATG+TGG 0.529328 7_4:-26420367 None:intergenic
TAGTAAAGAATCATTTGGAA+TGG 0.550429 7_4:-26420133 None:intergenic
TAGTTCTCTTTGAGGTTGTG+AGG 0.552834 7_4:-26421152 None:intergenic
CATTCATTGTAAGTACAAGT+TGG 0.566084 7_4:-26421348 None:intergenic
CTAACAACTAATTAGAAGAA+GGG 0.576382 7_4:-26421569 None:intergenic
TTCAGGGTAGCAATGAAGCA+TGG 0.580977 7_4:+26421283 Msa1147270:intron
GTACTGAATGCTGACTATAG+TGG 0.596322 7_4:-26420267 None:intergenic
AGCTGAGCAAGTTCCTGTGG+AGG 0.603576 7_4:+26421395 Msa1147270:CDS
CAAAATCTGCACTAAGACAG+AGG 0.612880 7_4:-26420307 None:intergenic
GCTGAGCAAGTTCCTGTGGA+GGG 0.617680 7_4:+26421396 Msa1147270:CDS
CAGAGCTGAGCAAGTTCCTG+TGG 0.618590 7_4:+26421392 Msa1147270:CDS
GGTAAGATAATGTGGTGTTG+TGG 0.618860 7_4:-26420359 None:intergenic
CAGGAATTGAAACAAAAGGG+TGG 0.635486 7_4:+26421119 Msa1147270:intron
TGTACTTACAATGAATGTAG+AGG 0.646526 7_4:+26421354 Msa1147270:CDS
GTAAGTACAAGTTGGTGCTG+TGG 0.653282 7_4:-26421340 None:intergenic
AGTGATAAGGGCTATTGATG+GGG 0.679066 7_4:-26421425 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACAAAAAAAAAAAAAAG+AGG + chr7_4:26420456-26420475 Msa1147270:five_prime_UTR 10.0%
!! ATAACAAAAAAAAAAAAAAG+AGG + chr7_4:26420456-26420475 Msa1147270:five_prime_UTR 10.0%
!!! TAAGATAAAAAATGTGTTTT+TGG - chr7_4:26420408-26420427 None:intergenic 15.0%
!!! ATGTAATTTTGTAAAACTTA+TGG - chr7_4:26420873-26420892 None:intergenic 15.0%
!!! TAAGTTTTACAAAATTACAT+TGG + chr7_4:26420873-26420892 Msa1147270:intron 15.0%
!!! ATAATCTTAATTTTGTGTTT+TGG + chr7_4:26421525-26421544 Msa1147270:three_prime_UTR 15.0%
!!! TAAGATAAAAAATGTGTTTT+TGG - chr7_4:26420408-26420427 None:intergenic 15.0%
!!! ATGTAATTTTGTAAAACTTA+TGG - chr7_4:26420873-26420892 None:intergenic 15.0%
!!! TAAGTTTTACAAAATTACAT+TGG + chr7_4:26420873-26420892 Msa1147270:intron 15.0%
!!! ATAATCTTAATTTTGTGTTT+TGG + chr7_4:26421525-26421544 Msa1147270:three_prime_UTR 15.0%
!! TTCAATAGTAAAGAATCATT+TGG - chr7_4:26420141-26420160 None:intergenic 20.0%
!! AAAAAAAAAAAAGAGGAGAA+TGG + chr7_4:26420463-26420482 Msa1147270:exon 20.0%
!! AAAAAAAAAAAGAGGAGAAT+GGG + chr7_4:26420464-26420483 Msa1147270:exon 20.0%
!! TCTTTCAATTGTATATAGTT+TGG + chr7_4:26420703-26420722 Msa1147270:intron 20.0%
!! CATATTATACCTTACTTAAT+TGG + chr7_4:26420787-26420806 Msa1147270:intron 20.0%
!! AAAAATACACCAATTAAGTA+AGG - chr7_4:26420799-26420818 None:intergenic 20.0%
!! ATCAATTTGAATTAATTGCT+TGG + chr7_4:26421205-26421224 Msa1147270:intron 20.0%
!!! TTTTTGTGTCTATTATTTTC+AGG + chr7_4:26421266-26421285 Msa1147270:intron 20.0%
!!! TTTTGTGTCTATTATTTTCA+GGG + chr7_4:26421267-26421286 Msa1147270:intron 20.0%
!! GAAAATGAAACTTAACAAAT+AGG - chr7_4:26421667-26421686 None:intergenic 20.0%
!! TTCAATAGTAAAGAATCATT+TGG - chr7_4:26420141-26420160 None:intergenic 20.0%
!! AAAAAAAAAAAAGAGGAGAA+TGG + chr7_4:26420463-26420482 Msa1147270:exon 20.0%
!! AAAAAAAAAAAGAGGAGAAT+GGG + chr7_4:26420464-26420483 Msa1147270:exon 20.0%
!! TCTTTCAATTGTATATAGTT+TGG + chr7_4:26420703-26420722 Msa1147270:intron 20.0%
!! CATATTATACCTTACTTAAT+TGG + chr7_4:26420787-26420806 Msa1147270:intron 20.0%
!! AAAAATACACCAATTAAGTA+AGG - chr7_4:26420799-26420818 None:intergenic 20.0%
!! ATCAATTTGAATTAATTGCT+TGG + chr7_4:26421205-26421224 Msa1147270:intron 20.0%
!!! TTTTTGTGTCTATTATTTTC+AGG + chr7_4:26421266-26421285 Msa1147270:intron 20.0%
!!! TTTTGTGTCTATTATTTTCA+GGG + chr7_4:26421267-26421286 Msa1147270:intron 20.0%
!! GAAAATGAAACTTAACAAAT+AGG - chr7_4:26421667-26421686 None:intergenic 20.0%
! TAGTAAAGAATCATTTGGAA+TGG - chr7_4:26420136-26420155 None:intergenic 25.0%
!!! ATTGATTTGGTATTTGGTTT+GGG - chr7_4:26420176-26420195 None:intergenic 25.0%
!!! ATAGTGATTGATTTGGTATT+TGG - chr7_4:26420182-26420201 None:intergenic 25.0%
! CAAATCAATCACTATCATTA+CGG + chr7_4:26420187-26420206 Msa1147270:five_prime_UTR 25.0%
!!! TTTTTGGAAAGATAAAGATG+AGG - chr7_4:26420392-26420411 None:intergenic 25.0%
! GAATCATAGTATCATTAAGT+AGG - chr7_4:26420578-26420597 None:intergenic 25.0%
! AGAATTCATTGGAACTTTAT+AGG - chr7_4:26420608-26420627 None:intergenic 25.0%
!! TGAAAAAAAGAAAGAGTGTA+AGG - chr7_4:26420646-26420665 None:intergenic 25.0%
!!! TTTCTTTTTTTCACTTCTCT+TGG + chr7_4:26420653-26420672 Msa1147270:intron 25.0%
! TTGTAAAACTTATGGCAATT+TGG - chr7_4:26420865-26420884 None:intergenic 25.0%
! TTAAAACTTCAACAAAATCG+TGG - chr7_4:26420901-26420920 None:intergenic 25.0%
! AAATTAGTGCATGCTTAAAT+TGG - chr7_4:26420975-26420994 None:intergenic 25.0%
! GCAAAGAATGTTACAAATTT+AGG - chr7_4:26421100-26421119 None:intergenic 25.0%
! AAATTTGTAACATTCTTTGC+AGG + chr7_4:26421100-26421119 Msa1147270:intron 25.0%
!! AATTCTAGAAGATTGATGAT+TGG + chr7_4:26421315-26421334 Msa1147270:CDS 25.0%
! CTAACAACTAATTAGAAGAA+GGG - chr7_4:26421572-26421591 None:intergenic 25.0%
! ACTAACAACTAATTAGAAGA+AGG - chr7_4:26421573-26421592 None:intergenic 25.0%
! TAGTAAAGAATCATTTGGAA+TGG - chr7_4:26420136-26420155 None:intergenic 25.0%
!!! ATTGATTTGGTATTTGGTTT+GGG - chr7_4:26420176-26420195 None:intergenic 25.0%
!!! ATAGTGATTGATTTGGTATT+TGG - chr7_4:26420182-26420201 None:intergenic 25.0%
! CAAATCAATCACTATCATTA+CGG + chr7_4:26420187-26420206 Msa1147270:five_prime_UTR 25.0%
!!! TTTTTGGAAAGATAAAGATG+AGG - chr7_4:26420392-26420411 None:intergenic 25.0%
! GAATCATAGTATCATTAAGT+AGG - chr7_4:26420578-26420597 None:intergenic 25.0%
! AGAATTCATTGGAACTTTAT+AGG - chr7_4:26420608-26420627 None:intergenic 25.0%
!! TGAAAAAAAGAAAGAGTGTA+AGG - chr7_4:26420646-26420665 None:intergenic 25.0%
!!! TTTCTTTTTTTCACTTCTCT+TGG + chr7_4:26420653-26420672 Msa1147270:intron 25.0%
! TTGTAAAACTTATGGCAATT+TGG - chr7_4:26420865-26420884 None:intergenic 25.0%
! TTAAAACTTCAACAAAATCG+TGG - chr7_4:26420901-26420920 None:intergenic 25.0%
! AAATTAGTGCATGCTTAAAT+TGG - chr7_4:26420975-26420994 None:intergenic 25.0%
! GCAAAGAATGTTACAAATTT+AGG - chr7_4:26421100-26421119 None:intergenic 25.0%
! AAATTTGTAACATTCTTTGC+AGG + chr7_4:26421100-26421119 Msa1147270:intron 25.0%
!! AATTCTAGAAGATTGATGAT+TGG + chr7_4:26421315-26421334 Msa1147270:CDS 25.0%
! CTAACAACTAATTAGAAGAA+GGG - chr7_4:26421572-26421591 None:intergenic 25.0%
! ACTAACAACTAATTAGAAGA+AGG - chr7_4:26421573-26421592 None:intergenic 25.0%
!! GTATTTGGTTTGGGTAATAA+TGG - chr7_4:26420167-26420186 None:intergenic 30.0%
!! GATTGATTTGGTATTTGGTT+TGG - chr7_4:26420177-26420196 None:intergenic 30.0%
! CGTAATGATAGTGATTGATT+TGG - chr7_4:26420189-26420208 None:intergenic 30.0%
AATTACTAGATTGCCCATAA+TGG - chr7_4:26420216-26420235 None:intergenic 30.0%
GGCAATCTAGTAATTCTAAT+TGG + chr7_4:26420221-26420240 Msa1147270:five_prime_UTR 30.0%
AGAGGAACATGATCAAAAAA+AGG - chr7_4:26420292-26420311 None:intergenic 30.0%
GAAAGATAGGTAAGATAATG+TGG - chr7_4:26420370-26420389 None:intergenic 30.0%
AGATAAAGATGAGGAAAGAT+AGG - chr7_4:26420383-26420402 None:intergenic 30.0%
AACTTTAGCTGCAAGAATTA+AGG - chr7_4:26420528-26420547 None:intergenic 30.0%
AGCACTTCTCTAAATTATCA+AGG + chr7_4:26421002-26421021 Msa1147270:intron 30.0%
TTTGCAGGAATTGAAACAAA+AGG + chr7_4:26421115-26421134 Msa1147270:intron 30.0%
TTGCAGGAATTGAAACAAAA+GGG + chr7_4:26421116-26421135 Msa1147270:intron 30.0%
! TTCAAACTTAGTTCTCTTTG+AGG - chr7_4:26421163-26421182 None:intergenic 30.0%
TCAAAGAGAACTAAGTTTGA+AGG + chr7_4:26421162-26421181 Msa1147270:CDS 30.0%
CATTCATTGTAAGTACAAGT+TGG - chr7_4:26421351-26421370 None:intergenic 30.0%
TGTACTTACAATGAATGTAG+AGG + chr7_4:26421354-26421373 Msa1147270:CDS 30.0%
AAACACATCTGTAGTGATAA+GGG - chr7_4:26421440-26421459 None:intergenic 30.0%
!! GTATTTGGTTTGGGTAATAA+TGG - chr7_4:26420167-26420186 None:intergenic 30.0%
!! GATTGATTTGGTATTTGGTT+TGG - chr7_4:26420177-26420196 None:intergenic 30.0%
! CGTAATGATAGTGATTGATT+TGG - chr7_4:26420189-26420208 None:intergenic 30.0%
AATTACTAGATTGCCCATAA+TGG - chr7_4:26420216-26420235 None:intergenic 30.0%
GGCAATCTAGTAATTCTAAT+TGG + chr7_4:26420221-26420240 Msa1147270:five_prime_UTR 30.0%
AGAGGAACATGATCAAAAAA+AGG - chr7_4:26420292-26420311 None:intergenic 30.0%
GAAAGATAGGTAAGATAATG+TGG - chr7_4:26420370-26420389 None:intergenic 30.0%
AGATAAAGATGAGGAAAGAT+AGG - chr7_4:26420383-26420402 None:intergenic 30.0%
AACTTTAGCTGCAAGAATTA+AGG - chr7_4:26420528-26420547 None:intergenic 30.0%
AGCACTTCTCTAAATTATCA+AGG + chr7_4:26421002-26421021 Msa1147270:intron 30.0%
TTTGCAGGAATTGAAACAAA+AGG + chr7_4:26421115-26421134 Msa1147270:intron 30.0%
TTGCAGGAATTGAAACAAAA+GGG + chr7_4:26421116-26421135 Msa1147270:intron 30.0%
! TTCAAACTTAGTTCTCTTTG+AGG - chr7_4:26421163-26421182 None:intergenic 30.0%
TCAAAGAGAACTAAGTTTGA+AGG + chr7_4:26421162-26421181 Msa1147270:CDS 30.0%
CATTCATTGTAAGTACAAGT+TGG - chr7_4:26421351-26421370 None:intergenic 30.0%
TGTACTTACAATGAATGTAG+AGG + chr7_4:26421354-26421373 Msa1147270:CDS 30.0%
AAACACATCTGTAGTGATAA+GGG - chr7_4:26421440-26421459 None:intergenic 30.0%
TATCATTACGGTCTCCATTA+TGG + chr7_4:26420199-26420218 Msa1147270:five_prime_UTR 35.0%
ATCATTACGGTCTCCATTAT+GGG + chr7_4:26420200-26420219 Msa1147270:five_prime_UTR 35.0%
GCTAACTCATAGGAAATTCT+AGG - chr7_4:26420248-26420267 None:intergenic 35.0%
! TTTTGCCAGTCTATCTCTTA+TGG + chr7_4:26420325-26420344 Msa1147270:five_prime_UTR 35.0%
! AGAGTAGCATGAGTACTTTT+GGG - chr7_4:26420502-26420521 None:intergenic 35.0%
! AAGAGTAGCATGAGTACTTT+TGG - chr7_4:26420503-26420522 None:intergenic 35.0%
CTTGCAGCTAAAGTTATACA+AGG + chr7_4:26420533-26420552 Msa1147270:CDS 35.0%
AGAAGAAGGTGAGAATTCAT+TGG - chr7_4:26420619-26420638 None:intergenic 35.0%
TTAGTGCATGCTTAAATTGG+TGG - chr7_4:26420972-26420991 None:intergenic 35.0%
TAGTGATAAGGGCTATTGAT+GGG - chr7_4:26421429-26421448 None:intergenic 35.0%
CAAACACATCTGTAGTGATA+AGG - chr7_4:26421441-26421460 None:intergenic 35.0%
TATCATTACGGTCTCCATTA+TGG + chr7_4:26420199-26420218 Msa1147270:five_prime_UTR 35.0%
ATCATTACGGTCTCCATTAT+GGG + chr7_4:26420200-26420219 Msa1147270:five_prime_UTR 35.0%
GCTAACTCATAGGAAATTCT+AGG - chr7_4:26420248-26420267 None:intergenic 35.0%
! TTTTGCCAGTCTATCTCTTA+TGG + chr7_4:26420325-26420344 Msa1147270:five_prime_UTR 35.0%
! AGAGTAGCATGAGTACTTTT+GGG - chr7_4:26420502-26420521 None:intergenic 35.0%
! AAGAGTAGCATGAGTACTTT+TGG - chr7_4:26420503-26420522 None:intergenic 35.0%
CTTGCAGCTAAAGTTATACA+AGG + chr7_4:26420533-26420552 Msa1147270:CDS 35.0%
AGAAGAAGGTGAGAATTCAT+TGG - chr7_4:26420619-26420638 None:intergenic 35.0%
TTAGTGCATGCTTAAATTGG+TGG - chr7_4:26420972-26420991 None:intergenic 35.0%
TAGTGATAAGGGCTATTGAT+GGG - chr7_4:26421429-26421448 None:intergenic 35.0%
CAAACACATCTGTAGTGATA+AGG - chr7_4:26421441-26421460 None:intergenic 35.0%
GACTATAGTGGCTAACTCAT+AGG - chr7_4:26420258-26420277 None:intergenic 40.0%
! GTACTGAATGCTGACTATAG+TGG - chr7_4:26420270-26420289 None:intergenic 40.0%
CAAAATCTGCACTAAGACAG+AGG - chr7_4:26420310-26420329 None:intergenic 40.0%
AGTGACCATAAGAGATAGAC+TGG - chr7_4:26420333-26420352 None:intergenic 40.0%
! GGTAAGATAATGTGGTGTTG+TGG - chr7_4:26420362-26420381 None:intergenic 40.0%
!! CATGAGTACTTTTGGGAGTT+TGG - chr7_4:26420495-26420514 None:intergenic 40.0%
GAGTGTAAGGACTAAGAAGA+AGG - chr7_4:26420633-26420652 None:intergenic 40.0%
! TGCATGCTTAAATTGGTGGT+GGG - chr7_4:26420968-26420987 None:intergenic 40.0%
CAGGAATTGAAACAAAAGGG+TGG + chr7_4:26421119-26421138 Msa1147270:intron 40.0%
!! TAGTTCTCTTTGAGGTTGTG+AGG - chr7_4:26421155-26421174 None:intergenic 40.0%
AGTGATAAGGGCTATTGATG+GGG - chr7_4:26421428-26421447 None:intergenic 40.0%
GTAGTGATAAGGGCTATTGA+TGG - chr7_4:26421430-26421449 None:intergenic 40.0%
GACTATAGTGGCTAACTCAT+AGG - chr7_4:26420258-26420277 None:intergenic 40.0%
! GTACTGAATGCTGACTATAG+TGG - chr7_4:26420270-26420289 None:intergenic 40.0%
CAAAATCTGCACTAAGACAG+AGG - chr7_4:26420310-26420329 None:intergenic 40.0%
AGTGACCATAAGAGATAGAC+TGG - chr7_4:26420333-26420352 None:intergenic 40.0%
! GGTAAGATAATGTGGTGTTG+TGG - chr7_4:26420362-26420381 None:intergenic 40.0%
!! CATGAGTACTTTTGGGAGTT+TGG - chr7_4:26420495-26420514 None:intergenic 40.0%
GAGTGTAAGGACTAAGAAGA+AGG - chr7_4:26420633-26420652 None:intergenic 40.0%
! TGCATGCTTAAATTGGTGGT+GGG - chr7_4:26420968-26420987 None:intergenic 40.0%
CAGGAATTGAAACAAAAGGG+TGG + chr7_4:26421119-26421138 Msa1147270:intron 40.0%
!! TAGTTCTCTTTGAGGTTGTG+AGG - chr7_4:26421155-26421174 None:intergenic 40.0%
AGTGATAAGGGCTATTGATG+GGG - chr7_4:26421428-26421447 None:intergenic 40.0%
GTAGTGATAAGGGCTATTGA+TGG - chr7_4:26421430-26421449 None:intergenic 40.0%
GTGCATGCTTAAATTGGTGG+TGG - chr7_4:26420969-26420988 None:intergenic 45.0%
TTCAGGGTAGCAATGAAGCA+TGG + chr7_4:26421283-26421302 Msa1147270:intron 45.0%
!! GTAAGTACAAGTTGGTGCTG+TGG - chr7_4:26421343-26421362 None:intergenic 45.0%
GTGCATGCTTAAATTGGTGG+TGG - chr7_4:26420969-26420988 None:intergenic 45.0%
TTCAGGGTAGCAATGAAGCA+TGG + chr7_4:26421283-26421302 Msa1147270:intron 45.0%
!! GTAAGTACAAGTTGGTGCTG+TGG - chr7_4:26421343-26421362 None:intergenic 45.0%
CAGAGCTGAGCAAGTTCCTG+TGG + chr7_4:26421392-26421411 Msa1147270:CDS 55.0%
AGCTGAGCAAGTTCCTGTGG+AGG + chr7_4:26421395-26421414 Msa1147270:CDS 55.0%
GCTGAGCAAGTTCCTGTGGA+GGG + chr7_4:26421396-26421415 Msa1147270:CDS 55.0%
ATGGGGTCATTTCCCTCCAC+AGG - chr7_4:26421411-26421430 None:intergenic 55.0%
CAGAGCTGAGCAAGTTCCTG+TGG + chr7_4:26421392-26421411 Msa1147270:CDS 55.0%
AGCTGAGCAAGTTCCTGTGG+AGG + chr7_4:26421395-26421414 Msa1147270:CDS 55.0%
GCTGAGCAAGTTCCTGTGGA+GGG + chr7_4:26421396-26421415 Msa1147270:CDS 55.0%
ATGGGGTCATTTCCCTCCAC+AGG - chr7_4:26421411-26421430 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 26420095 26421702 26420095 ID=Msa1147270;Name=Msa1147270
chr7_4 mRNA 26420095 26421702 26420095 ID=Msa1147270-mRNA-1;Parent=Msa1147270;Name=Msa1147270-mRNA-1;_AED=0.19;_eAED=0.19;_QI=387|1|1|1|1|1|3|229|106
chr7_4 exon 26420095 26420554 26420095 ID=Msa1147270-mRNA-1:exon:6477;Parent=Msa1147270-mRNA-1
chr7_4 exon 26421122 26421183 26421122 ID=Msa1147270-mRNA-1:exon:6478;Parent=Msa1147270-mRNA-1
chr7_4 exon 26421288 26421702 26421288 ID=Msa1147270-mRNA-1:exon:6479;Parent=Msa1147270-mRNA-1
chr7_4 five_prime_UTR 26420095 26420481 26420095 ID=Msa1147270-mRNA-1:five_prime_utr;Parent=Msa1147270-mRNA-1
chr7_4 CDS 26420482 26420554 26420482 ID=Msa1147270-mRNA-1:cds;Parent=Msa1147270-mRNA-1
chr7_4 CDS 26421122 26421183 26421122 ID=Msa1147270-mRNA-1:cds;Parent=Msa1147270-mRNA-1
chr7_4 CDS 26421288 26421473 26421288 ID=Msa1147270-mRNA-1:cds;Parent=Msa1147270-mRNA-1
chr7_4 three_prime_UTR 26421474 26421702 26421474 ID=Msa1147270-mRNA-1:three_prime_utr;Parent=Msa1147270-mRNA-1
Gene Sequence

>Msa1147270

ATGGGTAACACCAAACTCCCAAAAGTACTCATGCTACTCTTGACCTTAATTCTTGCAGCTAAAGTTATACAAGGAATTGAAACAAAAGGGTGGATATCACAATCCTCACAACCTCAAAGAGAACTAAGTTTGAAGGGTAGCAATGAAGCATGGAAACAAAGAAATTCTAGAAGATTGATGATTGGATCCACAGCACCAACTTGTACTTACAATGAATGTAGAGGCTGCAAATATAGATGCAGAGCTGAGCAAGTTCCTGTGGAGGGAAATGACCCCATCAATAGCCCTTATCACTACAGATGTGTTTGTCATAGATCATGA

Protein sequence

>Msa1147270

MGNTKLPKVLMLLLTLILAAKVIQGIETKGWISQSSQPQRELSLKGSNEAWKQRNSRRLMIGSTAPTCTYNECRGCKYRCRAEQVPVEGNDPINSPYHYRCVCHRS*