Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0533990 | XP_013454867.1 | 99.555 | 449 | 2 | 0 | 1 | 449 | 1 | 449 | 0.0 | 942 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0533990 | sp|P29500|TBB1_PEA | 99.333 | 450 | 2 | 1 | 1 | 449 | 1 | 450 | 0.0 | 936 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0533990 | A0A072USS0 | 99.555 | 449 | 2 | 0 | 1 | 449 | 1 | 449 | 0.0 | 942 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044780 | Msa0533990 | -0.823893 | 1.084019e-53 | -8.615850e-47 |
| Msa0080370 | Msa0533990 | 0.800448 | 1.434554e-48 | -8.615850e-47 |
| Msa0106540 | Msa0533990 | 0.802874 | 4.559945e-49 | -8.615850e-47 |
| Msa0108630 | Msa0533990 | 0.824068 | 9.862924e-54 | -8.615850e-47 |
| Msa0168380 | Msa0533990 | 0.805521 | 1.282277e-49 | -8.615850e-47 |
| Msa0183710 | Msa0533990 | 0.801736 | 7.823619e-49 | -8.615850e-47 |
| Msa0206370 | Msa0533990 | 0.821007 | 5.074630e-53 | -8.615850e-47 |
| Msa0211460 | Msa0533990 | 0.801136 | 1.038363e-48 | -8.615850e-47 |
| Msa0369040 | Msa0533990 | 0.805887 | 1.074211e-49 | -8.615850e-47 |
| Msa0401060 | Msa0533990 | 0.823528 | 1.319519e-53 | -8.615850e-47 |
| Msa0276800 | Msa0533990 | -0.816024 | 6.845019e-52 | -8.615850e-47 |
| Msa0284800 | Msa0533990 | 0.810658 | 1.033020e-50 | -8.615850e-47 |
| Msa0316720 | Msa0533990 | -0.813739 | 2.197680e-51 | -8.615850e-47 |
| Msa0336460 | Msa0533990 | 0.806003 | 1.015835e-49 | -8.615850e-47 |
| Msa0533990 | Msa0567330 | 0.835295 | 1.824072e-56 | -8.615850e-47 |
| Msa0533990 | Msa0567570 | 0.836405 | 9.538319e-57 | -8.615850e-47 |
| Msa0533990 | Msa0576320 | 0.832517 | 9.034059e-56 | -8.615850e-47 |
| Msa0533990 | Msa0590000 | 0.994689 | 2.366594e-209 | -8.615850e-47 |
| Msa0533990 | Msa0630440 | 0.853399 | 2.451628e-61 | -8.615850e-47 |
| Msa0533990 | Msa0642550 | 0.800741 | 1.249924e-48 | -8.615850e-47 |
| Msa0533990 | Msa0713080 | 0.813954 | 1.970191e-51 | -8.615850e-47 |
| Msa0533990 | Msa0772220 | 0.809542 | 1.797269e-50 | -8.615850e-47 |
| Msa0533990 | Msa0870020 | 0.812117 | 4.982376e-51 | -8.615850e-47 |
| Msa0533990 | Msa0903340 | 0.806188 | 9.287411e-50 | -8.615850e-47 |
| Msa0533990 | Msa0909260 | 0.802739 | 4.861936e-49 | -8.615850e-47 |
| Msa0533990 | Msa1111910 | 0.800948 | 1.134251e-48 | -8.615850e-47 |
| Msa0533990 | Msa1147700 | 0.819404 | 1.182343e-52 | -8.615850e-47 |
| Msa0533990 | Msa1149910 | 0.802329 | 5.907801e-49 | -8.615850e-47 |
| Msa0533990 | Msa1183910 | 0.800256 | 1.569245e-48 | -8.615850e-47 |
| Msa0533990 | Msa1192360 | 0.804115 | 2.521540e-49 | -8.615850e-47 |
| Msa0533990 | Msa1206040 | 0.826180 | 3.124379e-54 | -8.615850e-47 |
| Msa0533990 | Msa1240940 | 0.817270 | 3.597930e-52 | -8.615850e-47 |
| Msa0533990 | Msa1250610 | 0.805229 | 1.476638e-49 | -8.615850e-47 |
| Msa0533990 | Msa1254100 | 0.809121 | 2.212501e-50 | -8.615850e-47 |
| Msa0533990 | Msa1282300 | 0.812526 | 4.055708e-51 | -8.615850e-47 |
| Msa0533990 | Msa1288070 | 0.806103 | 9.678120e-50 | -8.615850e-47 |
| Msa0533990 | Msa1297070 | 0.813051 | 3.112979e-51 | -8.615850e-47 |
| Msa0533990 | Msa1326680 | 0.801652 | 8.140059e-49 | -8.615850e-47 |
| Msa0533990 | Msa1328870 | 0.821379 | 4.165920e-53 | -8.615850e-47 |
| Msa0533990 | Msa1389820 | 0.801005 | 1.104099e-48 | -8.615850e-47 |
| Msa0533990 | Msa1405830 | 0.802755 | 4.826012e-49 | -8.615850e-47 |
| Msa0533990 | Msa1407810 | 0.840106 | 1.061936e-57 | -8.615850e-47 |
| Msa0533990 | Msa1433360 | 0.830026 | 3.702895e-55 | -8.615850e-47 |
| Msa0533990 | Msa1437780 | 0.839675 | 1.375056e-57 | -8.615850e-47 |
| Msa0533990 | Msa1447100 | 0.801244 | 9.867639e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0533990 | MtrunA17_Chr4g0007371 | 99.113 | 451 | 2 | 1 | 1 | 449 | 1 | 451 | 0.0 | 936 |
| Msa0533990 | MtrunA17_Chr4g0008401 | 96.047 | 430 | 17 | 0 | 1 | 430 | 1 | 430 | 0.0 | 850 |
| Msa0533990 | MtrunA17_Chr4g0008361 | 95.814 | 430 | 18 | 0 | 1 | 430 | 1 | 430 | 0.0 | 848 |
| Msa0533990 | MtrunA17_Chr1g0203181 | 95.814 | 430 | 18 | 0 | 1 | 430 | 1 | 430 | 0.0 | 848 |
| Msa0533990 | MtrunA17_Chr4g0051631 | 95.116 | 430 | 21 | 0 | 1 | 430 | 1 | 430 | 0.0 | 842 |
| Msa0533990 | MtrunA17_Chr2g0292921 | 94.884 | 430 | 22 | 0 | 1 | 430 | 1 | 430 | 0.0 | 841 |
| Msa0533990 | MtrunA17_Chr7g0255791 | 94.419 | 430 | 24 | 0 | 1 | 430 | 1 | 430 | 0.0 | 837 |
| Msa0533990 | MtrunA17_Chr3g0142731 | 93.056 | 432 | 28 | 1 | 1 | 430 | 1 | 432 | 0.0 | 825 |
| Msa0533990 | MtrunA17_Chr8g0386781 | 90.698 | 430 | 40 | 0 | 1 | 430 | 1 | 430 | 0.0 | 816 |
| Msa0533990 | MtrunA17_Chr8g0393021 | 90.271 | 442 | 40 | 2 | 1 | 439 | 1 | 442 | 0.0 | 814 |
| Msa0533990 | MtrunA17_Chr8g0378821 | 41.705 | 434 | 243 | 2 | 1 | 424 | 1 | 434 | 8.66e-126 | 372 |
| Msa0533990 | MtrunA17_Chr3g0140821 | 41.705 | 434 | 243 | 2 | 1 | 424 | 1 | 434 | 1.35e-124 | 369 |
| Msa0533990 | MtrunA17_Chr1g0206881 | 41.203 | 449 | 251 | 3 | 1 | 439 | 1 | 446 | 3.70e-124 | 368 |
| Msa0533990 | MtrunA17_Chr7g0253411 | 40.783 | 434 | 247 | 2 | 1 | 424 | 1 | 434 | 7.16e-124 | 367 |
| Msa0533990 | MtrunA17_Chr4g0054511 | 41.244 | 434 | 245 | 2 | 1 | 424 | 1 | 434 | 1.49e-122 | 364 |
| Msa0533990 | MtrunA17_Chr6g0461281 | 40.393 | 458 | 252 | 3 | 1 | 447 | 1 | 448 | 1.94e-122 | 363 |
| Msa0533990 | MtrunA17_Chr2g0300671 | 37.727 | 440 | 261 | 4 | 1 | 431 | 1 | 436 | 2.59e-101 | 309 |
| Msa0533990 | MtrunA17_Chr2g0300491 | 36.889 | 450 | 273 | 3 | 1 | 442 | 1 | 447 | 1.53e-99 | 306 |
| Msa0533990 | MtrunA17_Chr7g0275431 | 36.073 | 438 | 263 | 7 | 2 | 423 | 3 | 439 | 4.53e-99 | 305 |
| Msa0533990 | MtrunA17_Chr3g0109241 | 32.593 | 135 | 83 | 1 | 269 | 395 | 4 | 138 | 1.01e-21 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0533990 | AT5G62690.1 | 96.744 | 430 | 14 | 0 | 1 | 430 | 1 | 430 | 0.0 | 854 |
| Msa0533990 | AT5G62700.1 | 96.744 | 430 | 14 | 0 | 1 | 430 | 1 | 430 | 0.0 | 854 |
| Msa0533990 | AT5G23860.2 | 96.047 | 430 | 17 | 0 | 1 | 430 | 1 | 430 | 0.0 | 848 |
| Msa0533990 | AT5G23860.1 | 96.047 | 430 | 17 | 0 | 1 | 430 | 1 | 430 | 0.0 | 848 |
| Msa0533990 | AT2G29550.1 | 95.360 | 431 | 20 | 0 | 1 | 431 | 1 | 431 | 0.0 | 843 |
| Msa0533990 | AT1G75780.1 | 94.432 | 431 | 23 | 1 | 1 | 430 | 1 | 431 | 0.0 | 838 |
| Msa0533990 | AT5G12250.1 | 93.953 | 430 | 26 | 0 | 1 | 430 | 1 | 430 | 0.0 | 836 |
| Msa0533990 | AT4G20890.1 | 94.186 | 430 | 25 | 0 | 1 | 430 | 1 | 430 | 0.0 | 834 |
| Msa0533990 | AT5G44340.1 | 93.953 | 430 | 26 | 0 | 1 | 430 | 1 | 430 | 0.0 | 831 |
| Msa0533990 | AT1G20010.1 | 93.271 | 431 | 28 | 1 | 1 | 430 | 1 | 431 | 0.0 | 828 |
| Msa0533990 | AT1G64740.1 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 5.53e-126 | 373 |
| Msa0533990 | AT5G19780.1 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 2.01e-125 | 372 |
| Msa0533990 | AT5G19770.1 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 2.01e-125 | 372 |
| Msa0533990 | AT4G14960.2 | 41.781 | 438 | 242 | 3 | 1 | 428 | 1 | 435 | 2.22e-122 | 364 |
| Msa0533990 | AT1G50010.1 | 41.553 | 438 | 243 | 3 | 1 | 428 | 1 | 435 | 1.45e-121 | 362 |
| Msa0533990 | AT1G04820.1 | 41.553 | 438 | 243 | 3 | 1 | 428 | 1 | 435 | 1.45e-121 | 362 |
| Msa0533990 | AT4G14960.1 | 41.710 | 386 | 215 | 2 | 1 | 376 | 1 | 386 | 4.29e-104 | 316 |
| Msa0533990 | AT3G61650.1 | 35.011 | 457 | 278 | 8 | 2 | 442 | 3 | 456 | 5.63e-98 | 302 |
| Msa0533990 | AT5G05620.1 | 35.616 | 438 | 265 | 7 | 2 | 423 | 3 | 439 | 9.04e-98 | 301 |
Find 142 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATGCTGTAAAATTGATTT+TGG | 0.164016 | 4_1:+9295697 | Msa0533990:three_prime_UTR |
| AAGAAGGTTGAAATGAAATT+TGG | 0.190671 | 4_1:-9293091 | None:intergenic |
| ATCAAATCGGAGCAAAATTC+TGG | 0.214456 | 4_1:+9293205 | Msa0533990:CDS |
| CACTCACTTGGTGGAGGAAC+TGG | 0.264774 | 4_1:+9294586 | Msa0533990:CDS |
| TGGAATCCATTCCACAAAAT+AGG | 0.297243 | 4_1:-9295292 | None:intergenic |
| ACAGTAGACTTGACATTGTT+TGG | 0.300254 | 4_1:-9295312 | None:intergenic |
| AGAGTGGTGCTGGGAATAAC+TGG | 0.311077 | 4_1:+9293445 | Msa0533990:CDS |
| ACTGCTTCAGCCATGTTTAG+AGG | 0.311640 | 4_1:+9295210 | Msa0533990:CDS |
| AAAATGGCTTCAACATTCAT+TGG | 0.324788 | 4_1:+9295360 | Msa0533990:CDS |
| AGAAGGTTGAAATGAAATTT+GGG | 0.333106 | 4_1:-9293090 | None:intergenic |
| GGATCTTGAACCGGGTACTA+TGG | 0.338256 | 4_1:+9293362 | Msa0533990:CDS |
| TGTTCCGAGAGCGGTTCTTA+TGG | 0.339518 | 4_1:+9293341 | Msa0533990:CDS |
| TGGAAACTCCACATCCATTC+AGG | 0.349700 | 4_1:+9295380 | Msa0533990:CDS |
| GTGTTTGGTCAGAGTGGTGC+TGG | 0.360890 | 4_1:+9293435 | Msa0533990:CDS |
| TGAGAATTGTGATTGCTTGC+AGG | 0.369709 | 4_1:+9293536 | Msa0533990:CDS |
| CACTGCTATGTTCAGGAGAA+AGG | 0.380989 | 4_1:+9295431 | Msa0533990:CDS |
| GTCAGCTTAACTCTGATCTT+AGG | 0.393922 | 4_1:+9295007 | Msa0533990:CDS |
| AATAGGAGGAGTTCTTGTTC+TGG | 0.394999 | 4_1:-9295275 | None:intergenic |
| CACTTAGAGTCCTGTACTGC+TGG | 0.395756 | 4_1:-9295110 | None:intergenic |
| CTTGGTGGAGGAACTGGGTC+TGG | 0.396498 | 4_1:+9294592 | Msa0533990:CDS |
| TGTGAGTGTGAGAGAGGGTT+TGG | 0.397717 | 4_1:-9293045 | None:intergenic |
| AGCAGCACACATCATGTTCT+TGG | 0.404220 | 4_1:-9295163 | None:intergenic |
| ACCTGTTGTTTGAGGTTCCC+TGG | 0.407604 | 4_1:+9294985 | Msa0533990:CDS |
| GGTTCTTATGGATCTTGAAC+CGG | 0.408619 | 4_1:+9293353 | Msa0533990:CDS |
| ATTCTGTTCTTGATGTTGTT+AGG | 0.411260 | 4_1:+9293505 | Msa0533990:CDS |
| GGATGAGTATGGAGAGGAAG+AGG | 0.417641 | 4_1:+9295572 | Msa0533990:CDS |
| AAAGTAAGCATCATCCTGTC+TGG | 0.418443 | 4_1:-9294655 | None:intergenic |
| GAAATGAAAATTTGTGAAGA+AGG | 0.419340 | 4_1:-9293107 | None:intergenic |
| GGTTGGATCGATTCCATGTT+CGG | 0.419355 | 4_1:-9293241 | None:intergenic |
| CATTTGTTCATCAACCTCCT+TGG | 0.421209 | 4_1:-9295244 | None:intergenic |
| CTCCGATTTGATTACCGCAT+TGG | 0.423800 | 4_1:-9293194 | None:intergenic |
| GCTGGGAATAACTGGGCAAA+AGG | 0.423808 | 4_1:+9293453 | Msa0533990:CDS |
| CACATTTGTTGAGTGAGCTC+AGG | 0.431352 | 4_1:-9295135 | None:intergenic |
| AACAATTCACTGCTATGTTC+AGG | 0.434258 | 4_1:+9295424 | Msa0533990:CDS |
| CCTCATCAGCGGTGGCATCT+TGG | 0.436615 | 4_1:-9295551 | None:intergenic |
| ACCGCTGATGAGGATGAGTA+TGG | 0.442177 | 4_1:+9295561 | Msa0533990:CDS |
| AACAGAGAGGGTAGCATTGT+AGG | 0.442752 | 4_1:-9294722 | None:intergenic |
| CTGATATCAGCAACCATGTC+TGG | 0.452086 | 4_1:+9294958 | Msa0533990:CDS |
| GGAGGAACTGGGTCTGGAAT+GGG | 0.456477 | 4_1:+9294598 | Msa0533990:CDS |
| CTGGTGTCACCTGTTGTTTG+AGG | 0.465900 | 4_1:+9294977 | Msa0533990:CDS |
| TCCTGTACTGCTGGGAGCCA+CGG | 0.467863 | 4_1:-9295101 | None:intergenic |
| TGGAGAGGAAGAGGGTGAAG+AGG | 0.473975 | 4_1:+9295581 | Msa0533990:CDS |
| GGAGAAAGGCTTTCTTGCAT+TGG | 0.478824 | 4_1:+9295445 | Msa0533990:CDS |
| TGAATCACCGGTGTAGCGTC+CGG | 0.479982 | 4_1:-9293262 | None:intergenic |
| ACCAGGGAACCTCAAACAAC+AGG | 0.480075 | 4_1:-9294986 | None:intergenic |
| GGCCAATGCGGTAATCAAAT+CGG | 0.484414 | 4_1:+9293192 | Msa0533990:CDS |
| GTGAGGTATCGCCCATGCCT+AGG | 0.488888 | 4_1:-9295189 | None:intergenic |
| CGGAGCAAAATTCTGGGAAG+TGG | 0.489877 | 4_1:+9293212 | Msa0533990:CDS |
| CCCGTGGCTCCCAGCAGTAC+AGG | 0.489965 | 4_1:+9295100 | Msa0533990:CDS |
| TTGATGTGACCTGTTGGTAG+TGG | 0.497914 | 4_1:+9295730 | Msa0533990:three_prime_UTR |
| GATGAGTATGGAGAGGAAGA+GGG | 0.503164 | 4_1:+9295573 | Msa0533990:CDS |
| ACTCACTTGGTGGAGGAACT+GGG | 0.505509 | 4_1:+9294587 | Msa0533990:CDS |
| GCTTTCTTGCATTGGTACAC+TGG | 0.506815 | 4_1:+9295453 | Msa0533990:CDS |
| CCTGTACTGCTGGGAGCCAC+GGG | 0.507415 | 4_1:-9295100 | None:intergenic |
| CAGAAGAACATGTCACAAGA+TGG | 0.507580 | 4_1:-9295893 | None:intergenic |
| TGGAGGAACTGGGTCTGGAA+TGG | 0.508835 | 4_1:+9294597 | Msa0533990:CDS |
| TGTGCTGCTGACCCTAGGCA+TGG | 0.509772 | 4_1:+9295177 | Msa0533990:CDS |
| TGTCTTTCTCCACTACCAAC+AGG | 0.510299 | 4_1:-9295739 | None:intergenic |
| TGACCAAACACAAAATTATC+CGG | 0.511815 | 4_1:-9293423 | None:intergenic |
| CAAGTATGCCACTCACTTGG+TGG | 0.517337 | 4_1:+9294577 | Msa0533990:CDS |
| TCAAATCGGAGCAAAATTCT+GGG | 0.518022 | 4_1:+9293206 | Msa0533990:CDS |
| TGAGAGTGTGAGTGTGAGAG+AGG | 0.522101 | 4_1:-9293051 | None:intergenic |
| AGATCAGAGTTAAGCTGACC+AGG | 0.523471 | 4_1:-9295003 | None:intergenic |
| CCTACGGAACATTTCCTGAA+TGG | 0.523804 | 4_1:-9295394 | None:intergenic |
| TTGCATTGGTACACTGGTGA+AGG | 0.524227 | 4_1:+9295459 | Msa0533990:CDS |
| TTTCAAGTATGCCACTCACT+TGG | 0.530375 | 4_1:+9294574 | Msa0533990:CDS |
| CGGGTACTATGGATAGTATC+CGG | 0.537467 | 4_1:+9293373 | Msa0533990:CDS |
| GAAGTGGTTTGCGCCGAACA+TGG | 0.540201 | 4_1:+9293228 | Msa0533990:CDS |
| ACTATGGATAGTATCCGGTC+TGG | 0.540371 | 4_1:+9293378 | Msa0533990:CDS |
| CTGAGCTCACTCAACAAATG+TGG | 0.540387 | 4_1:+9295136 | Msa0533990:CDS |
| GCTCATCTTGCCTCTAAACA+TGG | 0.543181 | 4_1:-9295220 | None:intergenic |
| GAACATTTCCTGAATGGATG+TGG | 0.547117 | 4_1:-9295388 | None:intergenic |
| CTGGGAATAACTGGGCAAAA+GGG | 0.547182 | 4_1:+9293454 | Msa0533990:CDS |
| ACAGAGAGGGTAGCATTGTA+GGG | 0.548602 | 4_1:-9294721 | None:intergenic |
| ATCGTAGAATTTATTAACTG+TGG | 0.549899 | 4_1:+9295824 | Msa0533990:three_prime_UTR |
| CCAAGATGCCACCGCTGATG+AGG | 0.550130 | 4_1:+9295551 | Msa0533990:CDS |
| ATTCAGATCTTCAACTTGAA+CGG | 0.550491 | 4_1:+9293280 | Msa0533990:CDS |
| AGTATCCGGTCTGGACCGTA+TGG | 0.551849 | 4_1:+9293387 | Msa0533990:CDS |
| TGAGAGCAACATGAATGATC+TGG | 0.551963 | 4_1:+9295509 | Msa0533990:CDS |
| GAACATGGAATCGATCCAAC+CGG | 0.551983 | 4_1:+9293243 | Msa0533990:CDS |
| GAGAGTGTGAGTGTGAGAGA+GGG | 0.556844 | 4_1:-9293050 | None:intergenic |
| GTTCTTATGGATCTTGAACC+GGG | 0.556874 | 4_1:+9293354 | Msa0533990:CDS |
| GTGTCAGAAACCTTAGGAGA+AGG | 0.556885 | 4_1:-9294688 | None:intergenic |
| TGAGGTATCGCCCATGCCTA+GGG | 0.558978 | 4_1:-9295188 | None:intergenic |
| TGGTGAAGGCATGGACGAGA+TGG | 0.560351 | 4_1:+9295473 | Msa0533990:CDS |
| TGATGTGTGCTGCTGACCCT+AGG | 0.561458 | 4_1:+9295172 | Msa0533990:CDS |
| GAGAATTGTGATTGCTTGCA+GGG | 0.561746 | 4_1:+9293537 | Msa0533990:CDS |
| CCATTCAGGAAATGTTCCGT+AGG | 0.563699 | 4_1:+9295394 | Msa0533990:CDS |
| TGTTTGGTCAGAGTGGTGCT+GGG | 0.566395 | 4_1:+9293436 | Msa0533990:CDS |
| TCAGGGAAGAATACCCAGAC+AGG | 0.570015 | 4_1:+9294641 | Msa0533990:CDS |
| ACATTTGTTGAGTGAGCTCA+GGG | 0.571976 | 4_1:-9295134 | None:intergenic |
| GATTACCGCATTGGCCACCT+TGG | 0.572205 | 4_1:-9293185 | None:intergenic |
| TCACCGGTGTAGCGTCCGGT+TGG | 0.574212 | 4_1:-9293258 | None:intergenic |
| GCGGAAGCAAATGTCATACA+AGG | 0.580969 | 4_1:-9294794 | None:intergenic |
| AGATCCATAAGAACCGCTCT+CGG | 0.582689 | 4_1:-9293345 | None:intergenic |
| CGTCAAATTCTTCACATCCA+AGG | 0.585397 | 4_1:+9293168 | Msa0533990:CDS |
| TGAGCTCACTCAACAAATGT+GGG | 0.585971 | 4_1:+9295137 | Msa0533990:CDS |
| AAGTAAGCATCATCCTGTCT+GGG | 0.586190 | 4_1:-9294654 | None:intergenic |
| ACCACGGTGTCAGAAACCTT+AGG | 0.586612 | 4_1:-9294694 | None:intergenic |
| TGGAAGATTTGTTCCGAGAG+CGG | 0.586683 | 4_1:+9293332 | Msa0533990:CDS |
| TTTGCTCCGTTGACTTCCCG+TGG | 0.590682 | 4_1:+9295084 | Msa0533990:CDS |
| TCCTAAGGTTTCTGACACCG+TGG | 0.591848 | 4_1:+9294693 | Msa0533990:CDS |
| AGAAGAACATGTCACAAGAT+GGG | 0.594643 | 4_1:-9295892 | None:intergenic |
| AACAAGCTGGTGAACAGAGA+GGG | 0.596692 | 4_1:-9294734 | None:intergenic |
| TGTCAGAAACCTTAGGAGAA+GGG | 0.599265 | 4_1:-9294687 | None:intergenic |
| TGGGAGCCACGGGAAGTCAA+CGG | 0.600459 | 4_1:-9295090 | None:intergenic |
| GATTGCTGAGCTTCAAAATG+CGG | 0.606039 | 4_1:-9294813 | None:intergenic |
| AAGTTGAAGATCTGAATCAC+CGG | 0.607154 | 4_1:-9293274 | None:intergenic |
| TGAATTGTTCACTCACCCTA+CGG | 0.607184 | 4_1:-9295410 | None:intergenic |
| TTGGTACACTGGTGAAGGCA+TGG | 0.610557 | 4_1:+9295464 | Msa0533990:CDS |
| AATCCATTCCACAAAATAGG+AGG | 0.611691 | 4_1:-9295289 | None:intergenic |
| TCTGACCATACGGTCCAGAC+CGG | 0.612759 | 4_1:-9293392 | None:intergenic |
| CATTCAGGAAATGTTCCGTA+GGG | 0.612874 | 4_1:+9295395 | Msa0533990:CDS |
| ACTTAGAGTCCTGTACTGCT+GGG | 0.613311 | 4_1:-9295109 | None:intergenic |
| GCTTGTTGAAAATGCAGATG+AGG | 0.614968 | 4_1:+9294750 | Msa0533990:CDS |
| GATCCAACCGGACGCTACAC+CGG | 0.618066 | 4_1:+9293255 | Msa0533990:CDS |
| GTATGGTCAGATCTTTAGAC+CGG | 0.619894 | 4_1:+9293404 | Msa0533990:CDS |
| GCAAAAGGGCATTATACTGA+AGG | 0.620923 | 4_1:+9293468 | Msa0533990:CDS |
| GGTCTAAAGATCTGACCATA+CGG | 0.621130 | 4_1:-9293402 | None:intergenic |
| CACATCCAAGGTGGCCAATG+CGG | 0.624440 | 4_1:+9293180 | Msa0533990:CDS |
| GTGCTGCTGACCCTAGGCAT+GGG | 0.624521 | 4_1:+9295178 | Msa0533990:CDS |
| GAGTGGTGCTGGGAATAACT+GGG | 0.624747 | 4_1:+9293446 | Msa0533990:CDS |
| CAGTTCCTCCACCAAGTGAG+TGG | 0.625629 | 4_1:-9294585 | None:intergenic |
| CGGATACTATCCATAGTACC+CGG | 0.627540 | 4_1:-9293372 | None:intergenic |
| TGAAAATGCAGATGAGGTCA+TGG | 0.629240 | 4_1:+9294756 | Msa0533990:CDS |
| GTATGCCACTCACTTGGTGG+AGG | 0.629569 | 4_1:+9294580 | Msa0533990:CDS |
| TCCATACTCATCCTCATCAG+CGG | 0.637103 | 4_1:-9295562 | None:intergenic |
| CAACAAGCTGGTGAACAGAG+AGG | 0.644239 | 4_1:-9294735 | None:intergenic |
| TGACATGTGATCTTGAATGA+AGG | 0.644561 | 4_1:+9295617 | Msa0533990:exon |
| ACAACAGGTGACACCAGACA+TGG | 0.645746 | 4_1:-9294971 | None:intergenic |
| ATACTCATCCTCATCAGCGG+TGG | 0.651736 | 4_1:-9295559 | None:intergenic |
| ACAGTTAATAAATTCTACGA+TGG | 0.654518 | 4_1:-9295822 | None:intergenic |
| TATTACAATGAAGCAAGTGG+TGG | 0.660724 | 4_1:+9293312 | Msa0533990:CDS |
| GATCAGAGTTAAGCTGACCA+GGG | 0.663223 | 4_1:-9295002 | None:intergenic |
| TGATGAGGATGAGTATGGAG+AGG | 0.668397 | 4_1:+9295566 | Msa0533990:CDS |
| TAGAGGCAAGATGAGCACCA+AGG | 0.693808 | 4_1:+9295227 | Msa0533990:CDS |
| CAAATTCTTCACATCCAAGG+TGG | 0.706919 | 4_1:+9293171 | Msa0533990:CDS |
| TAAACATGGCTGAAGCAGTG+AGG | 0.710604 | 4_1:-9295206 | None:intergenic |
| AGGCAAGATGAGCACCAAGG+AGG | 0.712769 | 4_1:+9295230 | Msa0533990:CDS |
| GTGTATTACAATGAAGCAAG+TGG | 0.718256 | 4_1:+9293309 | Msa0533990:CDS |
| AGCATTGTAGGGTTCAACCA+CGG | 0.721451 | 4_1:-9294710 | None:intergenic |
| GGACGAGATGGAATTCACTG+AGG | 0.754042 | 4_1:+9295485 | Msa0533990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAACTTGTTTTGAAATTT+AGG | + | chr4_1:9293674-9293693 | Msa0533990:intron | 15.0% |
| !!! | TTAACTTGTTTTGAAATTTA+GGG | + | chr4_1:9293675-9293694 | Msa0533990:intron | 15.0% |
| !!! | ATTTGTTTCTGATTTATTTA+TGG | + | chr4_1:9293907-9293926 | Msa0533990:intron | 15.0% |
| !!! | TTTGTTTCTGATTTATTTAT+GGG | + | chr4_1:9293908-9293927 | Msa0533990:intron | 15.0% |
| !!! | TTTTGAACTTTTGTGATTTT+AGG | + | chr4_1:9293574-9293593 | Msa0533990:intron | 20.0% |
| !!! | TTTGAACTTTTGTGATTTTA+GGG | + | chr4_1:9293575-9293594 | Msa0533990:intron | 20.0% |
| !!! | TGTTGATTTTTTTGGATTTA+TGG | + | chr4_1:9293818-9293837 | Msa0533990:intron | 20.0% |
| !!! | TCTAACTTGTTTTGAAATTT+AGG | + | chr4_1:9293947-9293966 | Msa0533990:intron | 20.0% |
| !!! | TTGGTTTTTATAGAGGAAAT+GGG | - | chr4_1:9293029-9293048 | None:intergenic | 25.0% |
| !!! | TTTGGTTTTTATAGAGGAAA+TGG | - | chr4_1:9293030-9293049 | None:intergenic | 25.0% |
| ! | AGAAGGTTGAAATGAAATTT+GGG | - | chr4_1:9293093-9293112 | None:intergenic | 25.0% |
| ! | AAGAAGGTTGAAATGAAATT+TGG | - | chr4_1:9293094-9293113 | None:intergenic | 25.0% |
| ! | GAAATGAAAATTTGTGAAGA+AGG | - | chr4_1:9293110-9293129 | None:intergenic | 25.0% |
| !! | CTTCACAAATTTTCATTTCT+AGG | + | chr4_1:9293111-9293130 | Msa0533990:five_prime_UTR | 25.0% |
| !!! | ATTTGACGCATTTTGAAAAA+GGG | - | chr4_1:9293156-9293175 | None:intergenic | 25.0% |
| !!! | AATTTGACGCATTTTGAAAA+AGG | - | chr4_1:9293157-9293176 | None:intergenic | 25.0% |
| !!! | TAGGGTTTTGTTGATTTTTT+TGG | + | chr4_1:9293810-9293829 | Msa0533990:intron | 25.0% |
| !!! | TTTGTTGATTTATGTGTTGA+TGG | + | chr4_1:9294124-9294143 | Msa0533990:intron | 25.0% |
| !!! | ATGTGTTTTTATACAGTTGT+GGG | + | chr4_1:9294194-9294213 | Msa0533990:intron | 25.0% |
| ! | AGTTAACAATTAACAGTTCA+TGG | - | chr4_1:9294429-9294448 | None:intergenic | 25.0% |
| !!! | GTTAACTTGTCTTTGAAATT+TGG | + | chr4_1:9294442-9294461 | Msa0533990:intron | 25.0% |
| !!! | TGTCTTTGAAATTTGGTTTT+AGG | + | chr4_1:9294449-9294468 | Msa0533990:intron | 25.0% |
| !!! | GTCTTTGAAATTTGGTTTTA+GGG | + | chr4_1:9294450-9294469 | Msa0533990:intron | 25.0% |
| !!! | TTGTGTGCTTTTTTTATGTA+AGG | + | chr4_1:9294483-9294502 | Msa0533990:intron | 25.0% |
| !!! | TGTGTGCTTTTTTTATGTAA+GGG | + | chr4_1:9294484-9294503 | Msa0533990:intron | 25.0% |
| !!! | TCTTTTGATTTCAAAGATCA+GGG | + | chr4_1:9294624-9294643 | Msa0533990:CDS | 25.0% |
| !!! | CTATGCTGTAAAATTGATTT+TGG | + | chr4_1:9295697-9295716 | Msa0533990:three_prime_UTR | 25.0% |
| ! | ACAGTTAATAAATTCTACGA+TGG | - | chr4_1:9295825-9295844 | None:intergenic | 25.0% |
| ! | ATCGTAGAATTTATTAACTG+TGG | + | chr4_1:9295824-9295843 | Msa0533990:three_prime_UTR | 25.0% |
| ! | TGGTTTTTATAGAGGAAATG+GGG | - | chr4_1:9293028-9293047 | None:intergenic | 30.0% |
| !! | ATTTGGGTTTTCGATTTCTA+GGG | - | chr4_1:9293077-9293096 | None:intergenic | 30.0% |
| !! | AATTTGGGTTTTCGATTTCT+AGG | - | chr4_1:9293078-9293097 | None:intergenic | 30.0% |
| ATTCAGATCTTCAACTTGAA+CGG | + | chr4_1:9293280-9293299 | Msa0533990:CDS | 30.0% | |
| TGACCAAACACAAAATTATC+CGG | - | chr4_1:9293426-9293445 | None:intergenic | 30.0% | |
| ATTCTGTTCTTGATGTTGTT+AGG | + | chr4_1:9293505-9293524 | Msa0533990:CDS | 30.0% | |
| !! | GTGTTTTTGTAGTGTTTTGT+CGG | + | chr4_1:9293616-9293635 | Msa0533990:intron | 30.0% |
| ! | TTTGTGGGTGATTTTTGTAA+TGG | + | chr4_1:9293774-9293793 | Msa0533990:intron | 30.0% |
| ! | TTGTGGGTGATTTTTGTAAT+GGG | + | chr4_1:9293775-9293794 | Msa0533990:intron | 30.0% |
| !!! | TGATTTTTGTAATGGGTATG+TGG | + | chr4_1:9293782-9293801 | Msa0533990:intron | 30.0% |
| !! | TGCTTTTCATAGAGTTTTGT+GGG | + | chr4_1:9294048-9294067 | Msa0533990:intron | 30.0% |
| ! | TTTGTGGGTGATTTTTGTAA+TGG | + | chr4_1:9293774-9293793 | Msa0533990:intron | 30.0% |
| ! | TTGTGGGTGATTTTTGTAAT+GGG | + | chr4_1:9293775-9293794 | Msa0533990:intron | 30.0% |
| !! | CATGTGTTTTTATACAGTTG+TGG | + | chr4_1:9294193-9294212 | Msa0533990:intron | 30.0% |
| ! | TTGTGGGTGATTTTTGTAAT+GGG | + | chr4_1:9293775-9293794 | Msa0533990:intron | 30.0% |
| !!! | GTGATTTTTGTAATGGGTAT+GGG | + | chr4_1:9293781-9293800 | Msa0533990:intron | 30.0% |
| !! | AAAGTGCTGATAGATTTGTT+AGG | + | chr4_1:9294283-9294302 | Msa0533990:intron | 30.0% |
| !! | AAGTGCTGATAGATTTGTTA+GGG | + | chr4_1:9294284-9294303 | Msa0533990:intron | 30.0% |
| !! | TAGATTTGTTAGGGTTTGTT+TGG | + | chr4_1:9294293-9294312 | Msa0533990:intron | 30.0% |
| !!! | GTGTGCTTTTTTTATGTAAG+GGG | + | chr4_1:9294485-9294504 | Msa0533990:intron | 30.0% |
| !!! | CTCTTTTGATTTCAAAGATC+AGG | + | chr4_1:9294623-9294642 | Msa0533990:CDS | 30.0% |
| ! | TGTTTGTTGAGTAATGTGTT+TGG | + | chr4_1:9294900-9294919 | Msa0533990:intron | 30.0% |
| !!! | GTAATGTGTTTGGTTTTATG+TGG | + | chr4_1:9294910-9294929 | Msa0533990:intron | 30.0% |
| AAAATGGCTTCAACATTCAT+TGG | + | chr4_1:9295360-9295379 | Msa0533990:CDS | 30.0% | |
| !!! | TAAGCATCACTTTTTGTTGT+TGG | + | chr4_1:9295778-9295797 | Msa0533990:three_prime_UTR | 30.0% |
| !!! | AGAGGGTTTGGTTTTTATAG+AGG | - | chr4_1:9293036-9293055 | None:intergenic | 35.0% |
| ATCAAATCGGAGCAAAATTC+TGG | + | chr4_1:9293205-9293224 | Msa0533990:CDS | 35.0% | |
| TCAAATCGGAGCAAAATTCT+GGG | + | chr4_1:9293206-9293225 | Msa0533990:CDS | 35.0% | |
| AAGTTGAAGATCTGAATCAC+CGG | - | chr4_1:9293277-9293296 | None:intergenic | 35.0% | |
| GTGTATTACAATGAAGCAAG+TGG | + | chr4_1:9293309-9293328 | Msa0533990:CDS | 35.0% | |
| TATTACAATGAAGCAAGTGG+TGG | + | chr4_1:9293312-9293331 | Msa0533990:CDS | 35.0% | |
| ! | AGACCGGATAATTTTGTGTT+TGG | + | chr4_1:9293420-9293439 | Msa0533990:CDS | 35.0% |
| ! | AATTTTGTGTTTGGTCAGAG+TGG | + | chr4_1:9293429-9293448 | Msa0533990:CDS | 35.0% |
| ! | TTTTTGTAGTGTTTTGTCGG+TGG | + | chr4_1:9293619-9293638 | Msa0533990:intron | 35.0% |
| ! | TTTGTCGGTGGTTTTTGTAA+TGG | + | chr4_1:9293631-9293650 | Msa0533990:intron | 35.0% |
| ! | TTGTCGGTGGTTTTTGTAAT+GGG | + | chr4_1:9293632-9293651 | Msa0533990:intron | 35.0% |
| !! | CATTGATTGAGAAGTGTTGA+TGG | + | chr4_1:9293701-9293720 | Msa0533990:intron | 35.0% |
| !!! | GAAGTGTTGAAGTGTTTTTG+TGG | + | chr4_1:9293748-9293767 | Msa0533990:intron | 35.0% |
| !! | AGTGTTTTTGTGGAGTTTTG+TGG | + | chr4_1:9293758-9293777 | Msa0533990:intron | 35.0% |
| !! | GTGTTTTTGTGGAGTTTTGT+GGG | + | chr4_1:9293759-9293778 | Msa0533990:intron | 35.0% |
| ! | TAATGGGTATGTGGTCATTT+AGG | + | chr4_1:9293791-9293810 | Msa0533990:intron | 35.0% |
| AATGGGTATGTGGTCATTTA+GGG | + | chr4_1:9293792-9293811 | Msa0533990:intron | 35.0% | |
| ! | TTTGAAGTGATGAAGTCTTG+TGG | + | chr4_1:9293856-9293875 | Msa0533990:intron | 35.0% |
| !!! | TGTACGTTTTGAAGTGTTGA+TGG | + | chr4_1:9293974-9293993 | Msa0533990:intron | 35.0% |
| ! | GTGCTTTTCATAGAGTTTTG+TGG | + | chr4_1:9294047-9294066 | Msa0533990:intron | 35.0% |
| ! | GTTGTGGGTGATTTTTGTAA+TGG | + | chr4_1:9294209-9294228 | Msa0533990:intron | 35.0% |
| !!! | GGTGATTTTTGTAATGGGTA+TGG | + | chr4_1:9293780-9293799 | Msa0533990:intron | 35.0% |
| TTGTAGTTGAACTTTCTGTG+TGG | + | chr4_1:9294337-9294356 | Msa0533990:intron | 35.0% | |
| ! | AACTTTCTGTGTGGTTTTCT+AGG | + | chr4_1:9294346-9294365 | Msa0533990:intron | 35.0% |
| ! | ACTTTCTGTGTGGTTTTCTA+GGG | + | chr4_1:9294347-9294366 | Msa0533990:intron | 35.0% |
| !! | GGTTAACTTTGATAGTGTTG+TGG | + | chr4_1:9294506-9294525 | Msa0533990:intron | 35.0% |
| GTTGTGGCTGATTATGAAAT+TGG | + | chr4_1:9294522-9294541 | Msa0533990:intron | 35.0% | |
| GGCTGATTATGAAATTGGTT+TGG | + | chr4_1:9294527-9294546 | Msa0533990:intron | 35.0% | |
| !! | TGTGTTTTATTGTTGTGTGC+AGG | + | chr4_1:9294550-9294569 | Msa0533990:intron | 35.0% |
| AAATAGCAAAGCTTACAGCT+TGG | - | chr4_1:9294838-9294857 | None:intergenic | 35.0% | |
| !!! | ATGTGTTTGGTTTTATGTGG+TGG | + | chr4_1:9294913-9294932 | Msa0533990:intron | 35.0% |
| AATCCATTCCACAAAATAGG+AGG | - | chr4_1:9295292-9295311 | None:intergenic | 35.0% | |
| TGGAATCCATTCCACAAAAT+AGG | - | chr4_1:9295295-9295314 | None:intergenic | 35.0% | |
| ACAGTAGACTTGACATTGTT+TGG | - | chr4_1:9295315-9295334 | None:intergenic | 35.0% | |
| AACAATTCACTGCTATGTTC+AGG | + | chr4_1:9295424-9295443 | Msa0533990:CDS | 35.0% | |
| TGACATGTGATCTTGAATGA+AGG | + | chr4_1:9295617-9295636 | Msa0533990:exon | 35.0% | |
| AGAAGAACATGTCACAAGAT+GGG | - | chr4_1:9295895-9295914 | None:intergenic | 35.0% | |
| !! | GTCATTGATCTTTTGCTGTA+TGG | + | chr4_1:9295923-9295942 | Msa0533990:three_prime_UTR | 35.0% |
| CGTCAAATTCTTCACATCCA+AGG | + | chr4_1:9293168-9293187 | Msa0533990:CDS | 40.0% | |
| CAAATTCTTCACATCCAAGG+TGG | + | chr4_1:9293171-9293190 | Msa0533990:CDS | 40.0% | |
| GGTTCTTATGGATCTTGAAC+CGG | + | chr4_1:9293353-9293372 | Msa0533990:CDS | 40.0% | |
| GTTCTTATGGATCTTGAACC+GGG | + | chr4_1:9293354-9293373 | Msa0533990:CDS | 40.0% | |
| GGTCTAAAGATCTGACCATA+CGG | - | chr4_1:9293405-9293424 | None:intergenic | 40.0% | |
| GTATGGTCAGATCTTTAGAC+CGG | + | chr4_1:9293404-9293423 | Msa0533990:CDS | 40.0% | |
| !! | GCAAAAGGGCATTATACTGA+AGG | + | chr4_1:9293468-9293487 | Msa0533990:CDS | 40.0% |
| TGAGAATTGTGATTGCTTGC+AGG | + | chr4_1:9293536-9293555 | Msa0533990:CDS | 40.0% | |
| GAGAATTGTGATTGCTTGCA+GGG | + | chr4_1:9293537-9293556 | Msa0533990:CDS | 40.0% | |
| ACCCTGCAAGCAATAACAAA+GGG | - | chr4_1:9294251-9294270 | None:intergenic | 40.0% | |
| TACCCTGCAAGCAATAACAA+AGG | - | chr4_1:9294252-9294271 | None:intergenic | 40.0% | |
| ! | TTGTTATTGCTTGCAGGGTA+TGG | + | chr4_1:9294252-9294271 | Msa0533990:intron | 40.0% |
| ! | TTTCAAGTATGCCACTCACT+TGG | + | chr4_1:9294574-9294593 | Msa0533990:CDS | 40.0% |
| AAGTAAGCATCATCCTGTCT+GGG | - | chr4_1:9294657-9294676 | None:intergenic | 40.0% | |
| AAAGTAAGCATCATCCTGTC+TGG | - | chr4_1:9294658-9294677 | None:intergenic | 40.0% | |
| TGTCAGAAACCTTAGGAGAA+GGG | - | chr4_1:9294690-9294709 | None:intergenic | 40.0% | |
| ! | CATCTGCATTTTCAACAAGC+TGG | - | chr4_1:9294750-9294769 | None:intergenic | 40.0% |
| ! | GCTTGTTGAAAATGCAGATG+AGG | + | chr4_1:9294750-9294769 | Msa0533990:CDS | 40.0% |
| TGAAAATGCAGATGAGGTCA+TGG | + | chr4_1:9294756-9294775 | Msa0533990:CDS | 40.0% | |
| GATTGCTGAGCTTCAAAATG+CGG | - | chr4_1:9294816-9294835 | None:intergenic | 40.0% | |
| GTCAGCTTAACTCTGATCTT+AGG | + | chr4_1:9295007-9295026 | Msa0533990:CDS | 40.0% | |
| ACCATGAAAAAGTGAAGACG+CGG | - | chr4_1:9295060-9295079 | None:intergenic | 40.0% | |
| !!! | CGTCTTCACTTTTTCATGGT+TGG | + | chr4_1:9295060-9295079 | Msa0533990:CDS | 40.0% |
| ! | ACATTTGTTGAGTGAGCTCA+GGG | - | chr4_1:9295137-9295156 | None:intergenic | 40.0% |
| TGAGCTCACTCAACAAATGT+GGG | + | chr4_1:9295137-9295156 | Msa0533990:CDS | 40.0% | |
| CATTTGTTCATCAACCTCCT+TGG | - | chr4_1:9295247-9295266 | None:intergenic | 40.0% | |
| AATAGGAGGAGTTCTTGTTC+TGG | - | chr4_1:9295278-9295297 | None:intergenic | 40.0% | |
| ! | CAAGAACTCCTCCTATTTTG+TGG | + | chr4_1:9295281-9295300 | Msa0533990:CDS | 40.0% |
| ! | ACTCCTCCTATTTTGTGGAA+TGG | + | chr4_1:9295286-9295305 | Msa0533990:CDS | 40.0% |
| !! | AAGCCATTTTCAACCCTGTT+GGG | - | chr4_1:9295350-9295369 | None:intergenic | 40.0% |
| GAACATTTCCTGAATGGATG+TGG | - | chr4_1:9295391-9295410 | None:intergenic | 40.0% | |
| CATTCAGGAAATGTTCCGTA+GGG | + | chr4_1:9295395-9295414 | Msa0533990:CDS | 40.0% | |
| TGAATTGTTCACTCACCCTA+CGG | - | chr4_1:9295413-9295432 | None:intergenic | 40.0% | |
| TGAGAGCAACATGAATGATC+TGG | + | chr4_1:9295509-9295528 | Msa0533990:CDS | 40.0% | |
| !!! | TCTGTTTTGATGTGACCTGT+TGG | + | chr4_1:9295724-9295743 | Msa0533990:three_prime_UTR | 40.0% |
| CAGAAGAACATGTCACAAGA+TGG | - | chr4_1:9295896-9295915 | None:intergenic | 40.0% | |
| GGCCAATGCGGTAATCAAAT+CGG | + | chr4_1:9293192-9293211 | Msa0533990:CDS | 45.0% | |
| ! | CTCCGATTTGATTACCGCAT+TGG | - | chr4_1:9293197-9293216 | None:intergenic | 45.0% |
| ! | GGTTGGATCGATTCCATGTT+CGG | - | chr4_1:9293244-9293263 | None:intergenic | 45.0% |
| GAACATGGAATCGATCCAAC+CGG | + | chr4_1:9293243-9293262 | Msa0533990:CDS | 45.0% | |
| ! | TGGAAGATTTGTTCCGAGAG+CGG | + | chr4_1:9293332-9293351 | Msa0533990:CDS | 45.0% |
| AGATCCATAAGAACCGCTCT+CGG | - | chr4_1:9293348-9293367 | None:intergenic | 45.0% | |
| CGGATACTATCCATAGTACC+CGG | - | chr4_1:9293375-9293394 | None:intergenic | 45.0% | |
| CGGGTACTATGGATAGTATC+CGG | + | chr4_1:9293373-9293392 | Msa0533990:CDS | 45.0% | |
| ACTATGGATAGTATCCGGTC+TGG | + | chr4_1:9293378-9293397 | Msa0533990:CDS | 45.0% | |
| CTGGGAATAACTGGGCAAAA+GGG | + | chr4_1:9293454-9293473 | Msa0533990:CDS | 45.0% | |
| !! | GTCTTGTGGTTGAAGTGTTG+AGG | + | chr4_1:9293870-9293889 | Msa0533990:intron | 45.0% |
| !! | AGCCCTTTGTTATTGCTTGC+AGG | + | chr4_1:9294246-9294265 | Msa0533990:intron | 45.0% |
| !! | GCCCTTTGTTATTGCTTGCA+GGG | + | chr4_1:9294247-9294266 | Msa0533990:intron | 45.0% |
| ! | CTCTGTTTTCCCTTCTCCTA+AGG | + | chr4_1:9294678-9294697 | Msa0533990:CDS | 45.0% |
| GTGTCAGAAACCTTAGGAGA+AGG | - | chr4_1:9294691-9294710 | None:intergenic | 45.0% | |
| AGCATTGTAGGGTTCAACCA+CGG | - | chr4_1:9294713-9294732 | None:intergenic | 45.0% | |
| ACAGAGAGGGTAGCATTGTA+GGG | - | chr4_1:9294724-9294743 | None:intergenic | 45.0% | |
| AACAGAGAGGGTAGCATTGT+AGG | - | chr4_1:9294725-9294744 | None:intergenic | 45.0% | |
| AACAAGCTGGTGAACAGAGA+GGG | - | chr4_1:9294737-9294756 | None:intergenic | 45.0% | |
| GCGGAAGCAAATGTCATACA+AGG | - | chr4_1:9294797-9294816 | None:intergenic | 45.0% | |
| !! | GTTTTATGTGGTGGTGCAGT+TGG | + | chr4_1:9294922-9294941 | Msa0533990:intron | 45.0% |
| CTGATATCAGCAACCATGTC+TGG | + | chr4_1:9294958-9294977 | Msa0533990:CDS | 45.0% | |
| GATCAGAGTTAAGCTGACCA+GGG | - | chr4_1:9295005-9295024 | None:intergenic | 45.0% | |
| AGATCAGAGTTAAGCTGACC+AGG | - | chr4_1:9295006-9295025 | None:intergenic | 45.0% | |
| AAAAAGTGAAGACGCGGGAA+TGG | - | chr4_1:9295054-9295073 | None:intergenic | 45.0% | |
| CCATGAAAAAGTGAAGACGC+GGG | - | chr4_1:9295059-9295078 | None:intergenic | 45.0% | |
| ACTTAGAGTCCTGTACTGCT+GGG | - | chr4_1:9295112-9295131 | None:intergenic | 45.0% | |
| ! | CACATTTGTTGAGTGAGCTC+AGG | - | chr4_1:9295138-9295157 | None:intergenic | 45.0% |
| CTGAGCTCACTCAACAAATG+TGG | + | chr4_1:9295136-9295155 | Msa0533990:CDS | 45.0% | |
| AGCAGCACACATCATGTTCT+TGG | - | chr4_1:9295166-9295185 | None:intergenic | 45.0% | |
| TAAACATGGCTGAAGCAGTG+AGG | - | chr4_1:9295209-9295228 | None:intergenic | 45.0% | |
| ACTGCTTCAGCCATGTTTAG+AGG | + | chr4_1:9295210-9295229 | Msa0533990:CDS | 45.0% | |
| GCTCATCTTGCCTCTAAACA+TGG | - | chr4_1:9295223-9295242 | None:intergenic | 45.0% | |
| !! | AGCCATTTTCAACCCTGTTG+GGG | - | chr4_1:9295349-9295368 | None:intergenic | 45.0% |
| !! | GAAGCCATTTTCAACCCTGT+TGG | - | chr4_1:9295351-9295370 | None:intergenic | 45.0% |
| TGGAAACTCCACATCCATTC+AGG | + | chr4_1:9295380-9295399 | Msa0533990:CDS | 45.0% | |
| CCTACGGAACATTTCCTGAA+TGG | - | chr4_1:9295397-9295416 | None:intergenic | 45.0% | |
| CCATTCAGGAAATGTTCCGT+AGG | + | chr4_1:9295394-9295413 | Msa0533990:CDS | 45.0% | |
| CACTGCTATGTTCAGGAGAA+AGG | + | chr4_1:9295431-9295450 | Msa0533990:CDS | 45.0% | |
| GGAGAAAGGCTTTCTTGCAT+TGG | + | chr4_1:9295445-9295464 | Msa0533990:CDS | 45.0% | |
| ! | GCTTTCTTGCATTGGTACAC+TGG | + | chr4_1:9295453-9295472 | Msa0533990:CDS | 45.0% |
| ! | TTGCATTGGTACACTGGTGA+AGG | + | chr4_1:9295459-9295478 | Msa0533990:CDS | 45.0% |
| TCCATACTCATCCTCATCAG+CGG | - | chr4_1:9295565-9295584 | None:intergenic | 45.0% | |
| TGATGAGGATGAGTATGGAG+AGG | + | chr4_1:9295566-9295585 | Msa0533990:CDS | 45.0% | |
| GATGAGTATGGAGAGGAAGA+GGG | + | chr4_1:9295573-9295592 | Msa0533990:CDS | 45.0% | |
| ! | TTGATGTGACCTGTTGGTAG+TGG | + | chr4_1:9295730-9295749 | Msa0533990:three_prime_UTR | 45.0% |
| TGTCTTTCTCCACTACCAAC+AGG | - | chr4_1:9295742-9295761 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTTTTTTTGTT+TGG | - | chr4_1:9293005-9293024 | None:intergenic | 5.0% |
| TGTGAGTGTGAGAGAGGGTT+TGG | - | chr4_1:9293048-9293067 | None:intergenic | 50.0% | |
| ! | GAGAGTGTGAGTGTGAGAGA+GGG | - | chr4_1:9293053-9293072 | None:intergenic | 50.0% |
| ! | TGAGAGTGTGAGTGTGAGAG+AGG | - | chr4_1:9293054-9293073 | None:intergenic | 50.0% |
| ! | CGGAGCAAAATTCTGGGAAG+TGG | + | chr4_1:9293212-9293231 | Msa0533990:CDS | 50.0% |
| TGTTCCGAGAGCGGTTCTTA+TGG | + | chr4_1:9293341-9293360 | Msa0533990:CDS | 50.0% | |
| GGATCTTGAACCGGGTACTA+TGG | + | chr4_1:9293362-9293381 | Msa0533990:CDS | 50.0% | |
| TGTTTGGTCAGAGTGGTGCT+GGG | + | chr4_1:9293436-9293455 | Msa0533990:CDS | 50.0% | |
| ! | AGAGTGGTGCTGGGAATAAC+TGG | + | chr4_1:9293445-9293464 | Msa0533990:CDS | 50.0% |
| ! | GAGTGGTGCTGGGAATAACT+GGG | + | chr4_1:9293446-9293465 | Msa0533990:CDS | 50.0% |
| GCTGGGAATAACTGGGCAAA+AGG | + | chr4_1:9293453-9293472 | Msa0533990:CDS | 50.0% | |
| CAAGTATGCCACTCACTTGG+TGG | + | chr4_1:9294577-9294596 | Msa0533990:CDS | 50.0% | |
| ! | ACTCACTTGGTGGAGGAACT+GGG | + | chr4_1:9294587-9294606 | Msa0533990:CDS | 50.0% |
| TCAGGGAAGAATACCCAGAC+AGG | + | chr4_1:9294641-9294660 | Msa0533990:CDS | 50.0% | |
| TCCTAAGGTTTCTGACACCG+TGG | + | chr4_1:9294693-9294712 | Msa0533990:CDS | 50.0% | |
| ! | ACCACGGTGTCAGAAACCTT+AGG | - | chr4_1:9294697-9294716 | None:intergenic | 50.0% |
| CAACAAGCTGGTGAACAGAG+AGG | - | chr4_1:9294738-9294757 | None:intergenic | 50.0% | |
| ACAACAGGTGACACCAGACA+TGG | - | chr4_1:9294974-9294993 | None:intergenic | 50.0% | |
| !! | CTGGTGTCACCTGTTGTTTG+AGG | + | chr4_1:9294977-9294996 | Msa0533990:CDS | 50.0% |
| ! | ACCTGTTGTTTGAGGTTCCC+TGG | + | chr4_1:9294985-9295004 | Msa0533990:CDS | 50.0% |
| ACCAGGGAACCTCAAACAAC+AGG | - | chr4_1:9294989-9295008 | None:intergenic | 50.0% | |
| !!! | CCCGCGTCTTCACTTTTTCA+TGG | + | chr4_1:9295056-9295075 | Msa0533990:CDS | 50.0% |
| CACTTAGAGTCCTGTACTGC+TGG | - | chr4_1:9295113-9295132 | None:intergenic | 50.0% | |
| TAGAGGCAAGATGAGCACCA+AGG | + | chr4_1:9295227-9295246 | Msa0533990:CDS | 50.0% | |
| TCTGTGATATCCCCCCAACA+GGG | + | chr4_1:9295334-9295353 | Msa0533990:CDS | 50.0% | |
| ! | CCATTTTCAACCCTGTTGGG+GGG | - | chr4_1:9295347-9295366 | None:intergenic | 50.0% |
| !! | GCCATTTTCAACCCTGTTGG+GGG | - | chr4_1:9295348-9295367 | None:intergenic | 50.0% |
| TTGGTACACTGGTGAAGGCA+TGG | + | chr4_1:9295464-9295483 | Msa0533990:CDS | 50.0% | |
| GGACGAGATGGAATTCACTG+AGG | + | chr4_1:9295485-9295504 | Msa0533990:CDS | 50.0% | |
| ATACTCATCCTCATCAGCGG+TGG | - | chr4_1:9295562-9295581 | None:intergenic | 50.0% | |
| ACCGCTGATGAGGATGAGTA+TGG | + | chr4_1:9295561-9295580 | Msa0533990:CDS | 50.0% | |
| GGATGAGTATGGAGAGGAAG+AGG | + | chr4_1:9295572-9295591 | Msa0533990:CDS | 50.0% | |
| CACATCCAAGGTGGCCAATG+CGG | + | chr4_1:9293180-9293199 | Msa0533990:CDS | 55.0% | |
| ! | GATTACCGCATTGGCCACCT+TGG | - | chr4_1:9293188-9293207 | None:intergenic | 55.0% |
| ! | GAAGTGGTTTGCGCCGAACA+TGG | + | chr4_1:9293228-9293247 | Msa0533990:CDS | 55.0% |
| TGAATCACCGGTGTAGCGTC+CGG | - | chr4_1:9293265-9293284 | None:intergenic | 55.0% | |
| AGTATCCGGTCTGGACCGTA+TGG | + | chr4_1:9293387-9293406 | Msa0533990:CDS | 55.0% | |
| TCTGACCATACGGTCCAGAC+CGG | - | chr4_1:9293395-9293414 | None:intergenic | 55.0% | |
| GTGTTTGGTCAGAGTGGTGC+TGG | + | chr4_1:9293435-9293454 | Msa0533990:CDS | 55.0% | |
| ! | GTATGCCACTCACTTGGTGG+AGG | + | chr4_1:9294580-9294599 | Msa0533990:CDS | 55.0% |
| CAGTTCCTCCACCAAGTGAG+TGG | - | chr4_1:9294588-9294607 | None:intergenic | 55.0% | |
| ! | CACTCACTTGGTGGAGGAAC+TGG | + | chr4_1:9294586-9294605 | Msa0533990:CDS | 55.0% |
| TGGAGGAACTGGGTCTGGAA+TGG | + | chr4_1:9294597-9294616 | Msa0533990:CDS | 55.0% | |
| ! | GGAGGAACTGGGTCTGGAAT+GGG | + | chr4_1:9294598-9294617 | Msa0533990:CDS | 55.0% |
| !! | TTTGCTCCGTTGACTTCCCG+TGG | + | chr4_1:9295084-9295103 | Msa0533990:CDS | 55.0% |
| ! | TGATGTGTGCTGCTGACCCT+AGG | + | chr4_1:9295172-9295191 | Msa0533990:CDS | 55.0% |
| !! | TGAGGTATCGCCCATGCCTA+GGG | - | chr4_1:9295191-9295210 | None:intergenic | 55.0% |
| AGGCAAGATGAGCACCAAGG+AGG | + | chr4_1:9295230-9295249 | Msa0533990:CDS | 55.0% | |
| GTCTGTGATATCCCCCCAAC+AGG | + | chr4_1:9295333-9295352 | Msa0533990:CDS | 55.0% | |
| CCCCCCAACAGGGTTGAAAA+TGG | + | chr4_1:9295344-9295363 | Msa0533990:CDS | 55.0% | |
| ! | TGGTGAAGGCATGGACGAGA+TGG | + | chr4_1:9295473-9295492 | Msa0533990:CDS | 55.0% |
| TGGAGAGGAAGAGGGTGAAG+AGG | + | chr4_1:9295581-9295600 | Msa0533990:CDS | 55.0% | |
| GATCCAACCGGACGCTACAC+CGG | + | chr4_1:9293255-9293274 | Msa0533990:CDS | 60.0% | |
| CTTGGTGGAGGAACTGGGTC+TGG | + | chr4_1:9294592-9294611 | Msa0533990:CDS | 60.0% | |
| TGGGAGCCACGGGAAGTCAA+CGG | - | chr4_1:9295093-9295112 | None:intergenic | 60.0% | |
| TCCTGTACTGCTGGGAGCCA+CGG | - | chr4_1:9295104-9295123 | None:intergenic | 60.0% | |
| ! | TGTGCTGCTGACCCTAGGCA+TGG | + | chr4_1:9295177-9295196 | Msa0533990:CDS | 60.0% |
| ! | GTGCTGCTGACCCTAGGCAT+GGG | + | chr4_1:9295178-9295197 | Msa0533990:CDS | 60.0% |
| !! | GTGAGGTATCGCCCATGCCT+AGG | - | chr4_1:9295192-9295211 | None:intergenic | 60.0% |
| CCTCATCAGCGGTGGCATCT+TGG | - | chr4_1:9295554-9295573 | None:intergenic | 60.0% | |
| CCAAGATGCCACCGCTGATG+AGG | + | chr4_1:9295551-9295570 | Msa0533990:CDS | 60.0% | |
| TCACCGGTGTAGCGTCCGGT+TGG | - | chr4_1:9293261-9293280 | None:intergenic | 65.0% | |
| CCTGTACTGCTGGGAGCCAC+GGG | - | chr4_1:9295103-9295122 | None:intergenic | 65.0% | |
| CCCGTGGCTCCCAGCAGTAC+AGG | + | chr4_1:9295100-9295119 | Msa0533990:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 9292996 | 9295960 | 9292996 | ID=Msa0533990;Name=Msa0533990 |
| chr4_1 | mRNA | 9292996 | 9295960 | 9292996 | ID=Msa0533990-mRNA-1;Parent=Msa0533990;Name=Msa0533990-mRNA-1;_AED=0.03;_eAED=0.03;_QI=169|1|1|1|1|1|3|334|449 |
| chr4_1 | exon | 9292996 | 9293558 | 9292996 | ID=Msa0533990-mRNA-1:exon:3041;Parent=Msa0533990-mRNA-1 |
| chr4_1 | exon | 9294572 | 9294841 | 9294572 | ID=Msa0533990-mRNA-1:exon:3042;Parent=Msa0533990-mRNA-1 |
| chr4_1 | exon | 9294941 | 9295960 | 9294941 | ID=Msa0533990-mRNA-1:exon:3043;Parent=Msa0533990-mRNA-1 |
| chr4_1 | five_prime_UTR | 9292996 | 9293164 | 9292996 | ID=Msa0533990-mRNA-1:five_prime_utr;Parent=Msa0533990-mRNA-1 |
| chr4_1 | CDS | 9293165 | 9293558 | 9293165 | ID=Msa0533990-mRNA-1:cds;Parent=Msa0533990-mRNA-1 |
| chr4_1 | CDS | 9294572 | 9294841 | 9294572 | ID=Msa0533990-mRNA-1:cds;Parent=Msa0533990-mRNA-1 |
| chr4_1 | CDS | 9294941 | 9295626 | 9294941 | ID=Msa0533990-mRNA-1:cds;Parent=Msa0533990-mRNA-1 |
| chr4_1 | three_prime_UTR | 9295627 | 9295960 | 9295627 | ID=Msa0533990-mRNA-1:three_prime_utr;Parent=Msa0533990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
