AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0080370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0080370 MtrunA17_Chr1g0192661 99.057 424 2 2 27 449 1 423 0.0 838
Msa0080370 MtrunA17_Chr7g0249551 57.212 416 173 2 36 449 9 421 2.98e-171 487
Msa0080370 MtrunA17_Chr4g0033731 61.538 351 135 0 27 377 1 351 4.66e-166 474
Msa0080370 MtrunA17_Chr8g0385501 38.795 415 185 14 27 379 1 408 2.95e-62 211
Msa0080370 MtrunA17_Chr3g0131441 36.408 412 196 14 27 379 1 405 5.10e-60 204
Msa0080370 MtrunA17_Chr3g0130481 86.000 50 4 3 401 449 29 76 3.73e-13 64.7
Msa0080370 MtrunA17_Chr3g0130491 85.294 34 5 0 350 383 16 49 1.69e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0080370 AT1G09210.1 80.907 419 77 2 34 449 6 424 0.0 627
Msa0080370 AT1G56340.2 84.958 359 54 0 33 391 5 363 0.0 620
Msa0080370 AT1G56340.1 84.533 375 58 0 33 407 5 379 0.0 618
Msa0080370 AT1G08450.1 58.197 366 153 0 36 401 14 379 4.57e-165 472
Msa0080370 AT1G08450.3 52.732 366 148 1 36 401 14 354 2.22e-143 416
Msa0080370 AT1G08450.2 43.243 370 148 3 36 401 14 325 2.01e-104 315
Msa0080370 AT5G61790.1 38.384 396 185 12 36 379 13 401 1.10e-71 236
Msa0080370 AT5G07340.1 37.046 413 191 14 45 402 22 420 3.80e-57 197
Msa0080370 AT5G07340.2 37.811 402 181 14 56 402 41 428 6.86e-57 197

Find 151 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTCTGGCTTCTTGTCTTC+AGG 0.169701 1_2:+58640676 None:intergenic
TTCCATGGTCCCTTGTACTC+TGG 0.182700 1_2:+58640381 None:intergenic
GTTCATGCTTGACAGAAAAT+TGG 0.241397 1_2:+58641287 None:intergenic
GCTACTTTAAGCTAATTCTT+TGG 0.257839 1_2:+58639095 None:intergenic
TTATCCTTGTTGCTGAATTC+AGG 0.265305 1_2:+58641322 None:intergenic
ATGTACGTCGTCCTCTTTAT+TGG 0.266525 1_2:+58639498 None:intergenic
TTCCACTTTCCACTGTAGTT+GGG 0.290555 1_2:+58640251 None:intergenic
TCAGGATCAGCAACCTCTTT+AGG 0.312415 1_2:+58640549 None:intergenic
TTCCATTGCAATGGCGATTA+GGG 0.314157 1_2:-58642605 Msa0080370:CDS
AGAACGAGAGAGAGAAGGTT+AGG 0.314409 1_2:+58642574 None:intergenic
CTTCCACTTTCCACTGTAGT+TGG 0.316605 1_2:+58640250 None:intergenic
GATGTTGATCAGAAGAAATT+TGG 0.323562 1_2:-58641220 Msa0080370:CDS
GTTGCTAAGTCAGTTGAATT+AGG 0.324855 1_2:-58638897 Msa0080370:three_prime_UTR
CCTCTGGCTTCTTGTCTTCA+GGG 0.335164 1_2:+58640677 None:intergenic
ATTCCATTGCAATGGCGATT+AGG 0.335328 1_2:-58642606 Msa0080370:CDS
CTACTTTAAGCTAATTCTTT+GGG 0.344293 1_2:+58639096 None:intergenic
CAAGGACCCAGAGGCCAAAA+AGG 0.346525 1_2:-58640832 Msa0080370:intron
GGCTTCTTGTCTTCAGGGTC+AGG 0.351167 1_2:+58640682 None:intergenic
TCCTTATCATCCCAATCTTC+TGG 0.358229 1_2:+58640712 None:intergenic
GTACTGTAACCACAGATATC+TGG 0.359127 1_2:+58641056 None:intergenic
TGCTGATCCTGATGCCAAAA+AGG 0.359945 1_2:-58640538 Msa0080370:intron
TTTCAACGGTCTGCTTATCT+AGG 0.361099 1_2:+58639278 None:intergenic
TCCATGGTCCCTTGTACTCT+GGG 0.365819 1_2:+58640382 None:intergenic
TCGCAGAAGCGATGGATAGA+AGG 0.367240 1_2:+58642545 None:intergenic
AATCAGCTGAAACAGTCTAA+TGG 0.374016 1_2:+58639221 None:intergenic
TTAACTTTGCAGGTGAAATC+TGG 0.376979 1_2:-58639967 Msa0080370:intron
TTGTTTGCAGGATGAGCTCT+AGG 0.388195 1_2:-58639396 Msa0080370:intron
ATCAGCTGAAACAGTCTAAT+GGG 0.397211 1_2:+58639222 None:intergenic
TATATATTTACCAGACTTCA+AGG 0.404034 1_2:-58640124 Msa0080370:intron
AGCAACTTGCTTAGCATACT+CGG 0.412572 1_2:+58639909 None:intergenic
AATACTTACAGCCAGAAGAT+TGG 0.416134 1_2:-58640723 Msa0080370:intron
ACGATTTACAGATTCATAAT+CGG 0.416157 1_2:+58639132 None:intergenic
GAACATCCTTCTTGATTAAG+TGG 0.416832 1_2:+58640994 None:intergenic
ATGCCAACATACTTCAACTT+GGG 0.437777 1_2:+58640078 None:intergenic
ATACTTACAGCCAGAAGATT+GGG 0.440491 1_2:-58640722 Msa0080370:intron
TATCCTTGTTGCTGAATTCA+GGG 0.448897 1_2:+58641323 None:intergenic
ATAAAATCTGTAATCTTCAC+TGG 0.449401 1_2:+58641363 None:intergenic
AAACAAACCTTTGGCTTCCA+TGG 0.453885 1_2:+58640366 None:intergenic
AGAGTCATGGCTAACTTCAT+TGG 0.454725 1_2:+58639561 None:intergenic
GAACGAGAGAGAGAAGGTTA+GGG 0.456719 1_2:+58642575 None:intergenic
TAAGTGGTTTGTGTCATTGT+AGG 0.461585 1_2:+58641010 None:intergenic
GCCAGAAGATTGGGATGATA+AGG 0.462026 1_2:-58640713 Msa0080370:CDS
CATTGCCAACCCAGAGTACA+AGG 0.463149 1_2:-58640391 Msa0080370:CDS
TCCACTTTCCACTGTAGTTG+GGG 0.465244 1_2:+58640252 None:intergenic
CTGGTAGTCTTTACTCTGAC+TGG 0.467326 1_2:-58640878 Msa0080370:CDS
CGTTGATTCTGATGCGGAAG+AGG 0.469655 1_2:-58639596 Msa0080370:CDS
TACAACAGTAGCAAGTTAAG+AGG 0.470157 1_2:-58638799 Msa0080370:three_prime_UTR
TTGGGGAAAACATAGATGTC+AGG 0.470534 1_2:+58640096 None:intergenic
GATAATGTGGAGAAGCAAAC+TGG 0.475988 1_2:-58640897 Msa0080370:CDS
AGAAACATGGGGCAAGCAAA+AGG 0.486201 1_2:-58639884 Msa0080370:CDS
AGAAGGATGAGAACTTGGCC+GGG 0.487362 1_2:-58641554 Msa0080370:CDS
ATGAGAACTTGGCCGGGGAG+TGG 0.492077 1_2:-58641548 Msa0080370:CDS
AAAATGCTGTAGGTTGCATC+AGG 0.493543 1_2:+58640924 None:intergenic
CGCAGAAGCGATGGATAGAA+GGG 0.494372 1_2:+58642546 None:intergenic
TCCTCATCATCCCAGTCCTC+AGG 0.495577 1_2:+58640438 None:intergenic
TTCCCCAAGTTGAAGTATGT+TGG 0.497182 1_2:-58640081 Msa0080370:CDS
CTTGTACTCTGGGTTGGCAA+TGG 0.498402 1_2:+58640392 None:intergenic
TAGGGAGTTTGCAAAGCATA+TGG 0.499383 1_2:-58639377 Msa0080370:three_prime_UTR
GAAAACCTTCGCAGAAGCGA+TGG 0.502839 1_2:+58642537 None:intergenic
AGCAAGTTGCTGAAGAAACA+TGG 0.506018 1_2:-58639897 Msa0080370:CDS
TATGTTCTTGCAGGCTGAGA+AGG 0.508527 1_2:-58639782 Msa0080370:intron
TTCTTCGAAGAGCGCTTCGA+AGG 0.509596 1_2:-58642517 Msa0080370:intron
TTCTGATGCGGAAGAGGATG+AGG 0.510129 1_2:-58639590 Msa0080370:CDS
ATGGAAGAAGGATGAGAACT+TGG 0.515979 1_2:-58641559 Msa0080370:CDS
TCTATCCATCGCTTCTGCGA+AGG 0.516389 1_2:-58642542 Msa0080370:CDS
AAGAAGGATGAGAACTTGGC+CGG 0.516801 1_2:-58641555 Msa0080370:CDS
AAAAGATATAACTTCGACTC+CGG 0.516839 1_2:+58639326 None:intergenic
AATGCCAACATACTTCAACT+TGG 0.516939 1_2:+58640077 None:intergenic
GGAACTACACCTCTGGTCAA+TGG 0.518922 1_2:-58641527 Msa0080370:CDS
GATGAGTCAAAGGCAGAAGC+TGG 0.519873 1_2:-58639538 Msa0080370:CDS
CTCTTCCGCATCAGAATCAA+CGG 0.521513 1_2:+58639597 None:intergenic
TTCAGGGAACTCAGCAGAGA+TGG 0.522780 1_2:+58641339 None:intergenic
GGTAAAATCTGAATGGAAGA+AGG 0.524814 1_2:-58641571 Msa0080370:CDS
TGGTCCCTTGTACTCTGGGT+TGG 0.525060 1_2:+58640386 None:intergenic
AAACCTGGGTTGTCAATCAA+TGG 0.532475 1_2:+58640224 None:intergenic
ATTGGGTGAGTGCCACGTAC+GGG 0.532537 1_2:+58642803 None:intergenic
TGTTGTGTAGCCTGAGGACT+GGG 0.537049 1_2:-58640448 Msa0080370:intron
CATTGGGTGAGTGCCACGTA+CGG 0.539643 1_2:+58642802 None:intergenic
AACCCTAATCGCCATTGCAA+TGG 0.540276 1_2:+58642603 None:intergenic
TGTGGCAGATTGTGGCCATT+GGG 0.544843 1_2:+58642786 None:intergenic
TCTTCCGCATCAGAATCAAC+GGG 0.545764 1_2:+58639598 None:intergenic
CACAAACCACTTAATCAAGA+AGG 0.545807 1_2:-58641000 Msa0080370:CDS
GGGGAGTGGAACTACACCTC+TGG 0.546989 1_2:-58641534 Msa0080370:CDS
ATGTGGCAGATTGTGGCCAT+TGG 0.547859 1_2:+58642785 None:intergenic
GCAACTTGCTTAGCATACTC+GGG 0.550973 1_2:+58639910 None:intergenic
GAATTAGCTTAAAGTAGCTA+TGG 0.551620 1_2:-58639090 Msa0080370:three_prime_UTR
CTAAAGATGGATGGGAAAGC+CGG 0.553813 1_2:-58641596 Msa0080370:intron
GCCGGTGGGTAAAATCTGAA+TGG 0.553831 1_2:-58641578 Msa0080370:CDS
TGTTTGCAGGATGAGCTCTA+GGG 0.555016 1_2:-58639395 Msa0080370:intron
TGTTGAATGCTAAAGATGGA+TGG 0.555665 1_2:-58641605 Msa0080370:intron
CCATGACTCTGATGAGTCAA+AGG 0.556573 1_2:-58639548 Msa0080370:CDS
ACCCCAACTACAGTGGAAAG+TGG 0.558201 1_2:-58640253 Msa0080370:CDS
TTGGCGGTGACACTCCCTAC+AGG 0.559321 1_2:-58641201 Msa0080370:intron
ATTATCAATCAAAATGCTGT+AGG 0.565497 1_2:+58640914 None:intergenic
TTGTTGTGTAGCCTGAGGAC+TGG 0.566755 1_2:-58640449 Msa0080370:intron
ACGTACGGGAAGATTGTCAT+TGG 0.566797 1_2:+58642817 None:intergenic
CAGCGATGAAACCAATAAAG+AGG 0.572191 1_2:-58639509 Msa0080370:CDS
CTTAGCATACTCGGGATCAT+CGG 0.572247 1_2:+58639918 None:intergenic
AGAAAAGAACGAGAGAGAGA+AGG 0.573982 1_2:+58642569 None:intergenic
ATACGATGACATTCCTAAAG+AGG 0.576967 1_2:-58640562 Msa0080370:CDS
GATATTATAAATCACCTGTA+GGG 0.577404 1_2:+58641187 None:intergenic
TCTCCCACCAAAGAAAATCA+AGG 0.577520 1_2:-58640850 Msa0080370:CDS
GTTGAATGCTAAAGATGGAT+GGG 0.579079 1_2:-58641604 Msa0080370:intron
CAGAAACTTGACTGTGGTGG+TGG 0.579680 1_2:-58641265 Msa0080370:CDS
GTTGATCAGAAGAAATTTGG+CGG 0.581881 1_2:-58641217 Msa0080370:CDS
GGAATATTTCCAGCTAGCAA+TGG 0.582398 1_2:-58638851 Msa0080370:three_prime_UTR
AGAGGTGTAGTTCCACTCCC+CGG 0.582515 1_2:+58641536 None:intergenic
AACTCATTGTCAGGAAACAA+AGG 0.583402 1_2:-58639626 Msa0080370:intron
AGCTGAGAAGAAGAAAGAAG+AGG 0.584374 1_2:-58639746 Msa0080370:CDS
GGTTACATGAAGTTGCTTAG+CGG 0.587170 1_2:-58641244 Msa0080370:CDS
GCAAGTTGCTGAAGAAACAT+GGG 0.587236 1_2:-58639896 Msa0080370:CDS
TGCTGTAGGTTGCATCAGGA+CGG 0.587388 1_2:+58640928 None:intergenic
GACTGGGATGATGAGGAAGA+TGG 0.589626 1_2:-58640432 Msa0080370:CDS
AGCGAGCGATTCCATTGCAA+TGG 0.589635 1_2:-58642614 Msa0080370:CDS
CCTTTGACTCATCAGAGTCA+TGG 0.591313 1_2:+58639548 None:intergenic
TGTTGGCATTGAATTGTGGC+AGG 0.591537 1_2:-58640064 Msa0080370:intron
GAAGGATGAGAACTTGGCCG+GGG 0.593588 1_2:-58641553 Msa0080370:CDS
GGACAATATGTGGCAGATTG+TGG 0.594348 1_2:+58642778 None:intergenic
TACTCTGGGTTGGCAATGGT+AGG 0.604644 1_2:+58640396 None:intergenic
TACACCTCTGGTCAATGGAA+TGG 0.606107 1_2:-58641522 Msa0080370:CDS
CGTACGTGGCACTCACCCAA+TGG 0.606462 1_2:-58642801 Msa0080370:CDS
TGCCAACATACTTCAACTTG+GGG 0.607807 1_2:+58640079 None:intergenic
AAGATGGATGGGAAAGCCGG+TGG 0.610833 1_2:-58641593 Msa0080370:CDS
TTGCTTACGTGGACAATATG+TGG 0.610903 1_2:+58642768 None:intergenic
TGCAAAGCATATGGCATATG+CGG 0.612393 1_2:-58639368 Msa0080370:three_prime_UTR
TGAGAAGAAGAAAGAAGAGG+AGG 0.621039 1_2:-58639743 Msa0080370:intron
GCCTGAGGACTGGGATGATG+AGG 0.621427 1_2:-58640439 Msa0080370:CDS
CAACTACAGTGGAAAGTGGA+AGG 0.622242 1_2:-58640249 Msa0080370:CDS
TGGGGAAAACATAGATGTCA+GGG 0.628802 1_2:+58640097 None:intergenic
ATGTGTAAACATGAGTAAGC+TGG 0.631281 1_2:+58640958 None:intergenic
ATCAAGAACCCCAACTACAG+TGG 0.637028 1_2:-58640260 Msa0080370:CDS
ACCCAGAGTACAAGGGACCA+TGG 0.641246 1_2:-58640383 Msa0080370:CDS
GTAAGCTGGTCAGTCTCACA+AGG 0.646980 1_2:+58640972 None:intergenic
AGTATGTTGGCATTGAATTG+TGG 0.647006 1_2:-58640068 Msa0080370:CDS
ATGATGAGGAAGATGGTGAG+TGG 0.647034 1_2:-58640425 Msa0080370:CDS
AATGGTGACGCTAATGACAA+AGG 0.650029 1_2:-58641504 Msa0080370:intron
ATGTTTGGTCCAGATATCTG+TGG 0.653875 1_2:-58641065 Msa0080370:CDS
AATGACAATCTTCCCGTACG+TGG 0.655653 1_2:-58642815 Msa0080370:CDS
CAAGGGACCATGGAAGCCAA+AGG 0.658097 1_2:-58640373 Msa0080370:intron
TAATTCAACTGACTTAGCAA+CGG 0.662594 1_2:+58638899 None:intergenic
TGATCCCGTTGATTCTGATG+CGG 0.665412 1_2:-58639602 Msa0080370:CDS
GCACCATTGATTGACAACCC+AGG 0.669589 1_2:-58640227 Msa0080370:intron
AAAGAAAATCAAGGACCCAG+AGG 0.673165 1_2:-58640841 Msa0080370:CDS
GTTCCCTGAATTCAGCAACA+AGG 0.674436 1_2:-58641326 Msa0080370:CDS
AGATGGATGGGAAAGCCGGT+GGG 0.676998 1_2:-58641592 Msa0080370:CDS
CCCTGAAGACAAGAAGCCAG+AGG 0.683823 1_2:-58640677 Msa0080370:intron
CAAGTTGCTGAAGAAACATG+GGG 0.696192 1_2:-58639895 Msa0080370:CDS
GTCACCATTCCATTGACCAG+AGG 0.697163 1_2:+58641518 None:intergenic
ATTGCCAACCCAGAGTACAA+GGG 0.731176 1_2:-58640390 Msa0080370:CDS
GAACAGAAACTTGACTGTGG+TGG 0.776860 1_2:-58641268 Msa0080370:CDS
CATGAACAGAAACTTGACTG+TGG 0.796573 1_2:-58641271 Msa0080370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTATATTTGATTTTTTCAA+AGG - chr1_2:58642736-58642755 Msa0080370:intron 15.0%
!! ATGAAATGAAAAAAGAGATA+TGG + chr1_2:58639131-58639150 None:intergenic 20.0%
!! ACATTCATGTTTGTAATTTA+TGG - chr1_2:58639183-58639202 Msa0080370:three_prime_UTR 20.0%
!! AATTTGCAGTGATAATATTA+TGG + chr1_2:58639839-58639858 None:intergenic 20.0%
!! ATGATTAGAAATTAGAAAGT+AGG + chr1_2:58640859-58640878 None:intergenic 20.0%
!! ATAATATAATGAGAGATGAA+TGG + chr1_2:58641119-58641138 None:intergenic 20.0%
!! ATTCATCTCTCATTATATTA+TGG - chr1_2:58641118-58641137 Msa0080370:intron 20.0%
!! TGATATATTGCAATATGTTT+AGG - chr1_2:58641281-58641300 Msa0080370:CDS 20.0%
!!! TTGATTTGTTTACTAACTTT+TGG - chr1_2:58641306-58641325 Msa0080370:CDS 20.0%
! TGAAAAAAGAGATATGGAAA+TGG + chr1_2:58639125-58639144 None:intergenic 25.0%
!! TGTGATTGAATTTTCATGAT+CGG - chr1_2:58639248-58639267 Msa0080370:three_prime_UTR 25.0%
! GGTTAATTAATCTTTGATCA+TGG - chr1_2:58639414-58639433 Msa0080370:intron 25.0%
! GGATTGTAAACAAAATGAAA+TGG + chr1_2:58639486-58639505 None:intergenic 25.0%
!! CAATCCTTTTAATCTCATTT+CGG - chr1_2:58639500-58639519 Msa0080370:CDS 25.0%
! AAAACTAGCATTCTTTAATC+CGG + chr1_2:58639559-58639578 None:intergenic 25.0%
! AATTTGATCTAATCCAAACA+AGG - chr1_2:58639813-58639832 Msa0080370:intron 25.0%
! ATACTAAATAAACTCGAACA+TGG + chr1_2:58639908-58639927 None:intergenic 25.0%
! TCAAAACACAAGTTAGAAAA+GGG + chr1_2:58639976-58639995 None:intergenic 25.0%
! ATCAAAACACAAGTTAGAAA+AGG + chr1_2:58639977-58639996 None:intergenic 25.0%
! ATTATGTTGAATGCTAAAGA+TGG - chr1_2:58639999-58640018 Msa0080370:intron 25.0%
! ATAAAATCTGTAATCTTCAC+TGG + chr1_2:58640248-58640267 None:intergenic 25.0%
! GATATTATAAATCACCTGTA+GGG + chr1_2:58640424-58640443 None:intergenic 25.0%
! TGAAAGAGATAAAACTAGAA+GGG + chr1_2:58640446-58640465 None:intergenic 25.0%
!! TAATTTTGCAGTATCATGTT+TGG - chr1_2:58640528-58640547 Msa0080370:intron 25.0%
! ATTATCAATCAAAATGCTGT+AGG + chr1_2:58640697-58640716 None:intergenic 25.0%
! TACATAAAACAAAAGGAATC+TGG + chr1_2:58640834-58640853 None:intergenic 25.0%
! GTAGGAATACATAAAACAAA+AGG + chr1_2:58640841-58640860 None:intergenic 25.0%
! ATACAAAAGCTTAGAGTAAA+AGG + chr1_2:58640962-58640981 None:intergenic 25.0%
! TATCTAATACACAACATAGT+AGG + chr1_2:58640998-58641017 None:intergenic 25.0%
! TATATATTTACCAGACTTCA+AGG - chr1_2:58641484-58641503 Msa0080370:intron 25.0%
!! TTTCTATTCACTCAATCTTT+TGG - chr1_2:58641758-58641777 Msa0080370:intron 25.0%
!!! CCATTAAGTTTTATTCCTTA+AGG + chr1_2:58641784-58641803 None:intergenic 25.0%
! CCTTAAGGAATAAAACTTAA+TGG - chr1_2:58641781-58641800 Msa0080370:intron 25.0%
! ACGATTTACAGATTCATAAT+CGG + chr1_2:58642479-58642498 None:intergenic 25.0%
! CTACTTTAAGCTAATTCTTT+GGG + chr1_2:58642515-58642534 None:intergenic 25.0%
! TGTTTGGTTAAATCATAACA+TGG + chr1_2:58642620-58642639 None:intergenic 25.0%
! GTTATGATTTAACCAAACAA+CGG - chr1_2:58642621-58642640 Msa0080370:intron 25.0%
! TGTTTGCTTAAATCATAACA+TGG + chr1_2:58642671-58642690 None:intergenic 25.0%
! GGTAAATTTGGTAATTTACG+TGG + chr1_2:58638869-58638888 None:intergenic 30.0%
AATTACACAACAATGCACAA+AGG + chr1_2:58639221-58639240 None:intergenic 30.0%
!! ATGTTGGTTTGAAAACGATT+TGG - chr1_2:58639380-58639399 Msa0080370:exon 30.0%
TCTTCCGAAATGAGATTAAA+AGG + chr1_2:58639507-58639526 None:intergenic 30.0%
ACAATCAGTTCATTAAAAGC+TGG + chr1_2:58639657-58639676 None:intergenic 30.0%
!! GATAATATTATGGCCTTGTT+TGG + chr1_2:58639829-58639848 None:intergenic 30.0%
!!! TTTCTTTCCTTTTTTCGTTG+AGG - chr1_2:58639877-58639896 Msa0080370:intron 30.0%
!! AAGGGGAAAATATTGATTTG+AGG + chr1_2:58639958-58639977 None:intergenic 30.0%
CAAAACACAAGTTAGAAAAG+GGG + chr1_2:58639975-58639994 None:intergenic 30.0%
AAACCAGCAACAATAAAACA+AGG + chr1_2:58640155-58640174 None:intergenic 30.0%
TGAATTGAAAGATGATACTG+AGG - chr1_2:58640181-58640200 Msa0080370:intron 30.0%
GATGTTGATCAGAAGAAATT+TGG - chr1_2:58640388-58640407 Msa0080370:CDS 30.0%
GGATATTATAAATCACCTGT+AGG + chr1_2:58640425-58640444 None:intergenic 30.0%
GTGAAAGAGATAAAACTAGA+AGG + chr1_2:58640447-58640466 None:intergenic 30.0%
!!! CAGCATTTTGATTGATAATG+TGG - chr1_2:58640698-58640717 Msa0080370:CDS 30.0%
ACTATAAACGTAGGTGAAAA+GGG + chr1_2:58640804-58640823 None:intergenic 30.0%
AACTATAAACGTAGGTGAAA+AGG + chr1_2:58640805-58640824 None:intergenic 30.0%
GGCAATTAAACTATAAACGT+AGG + chr1_2:58640813-58640832 None:intergenic 30.0%
TCTGACATTCTGTATTTGTA+GGG - chr1_2:58641023-58641042 Msa0080370:CDS 30.0%
TAACTTCAACTGCAAAAACA+AGG + chr1_2:58641419-58641438 None:intergenic 30.0%
ACTAAAATGCTCAAATCAAG+TGG + chr1_2:58641597-58641616 None:intergenic 30.0%
! TTAATGGATGTTGATCTCTT+TGG - chr1_2:58641797-58641816 Msa0080370:intron 30.0%
!!! AGTGAGCAAAAGTTTTATTC+CGG - chr1_2:58642263-58642282 Msa0080370:intron 30.0%
AAAAGATATAACTTCGACTC+CGG + chr1_2:58642285-58642304 None:intergenic 30.0%
! AACAGACAACAATGTCTTTT+TGG - chr1_2:58642412-58642431 Msa0080370:intron 30.0%
! GCTACTTTAAGCTAATTCTT+TGG + chr1_2:58642516-58642535 None:intergenic 30.0%
! GAATTAGCTTAAAGTAGCTA+TGG - chr1_2:58642518-58642537 Msa0080370:CDS 30.0%
! ATGATTTTCTTTCCGTTGTT+TGG + chr1_2:58642636-58642655 None:intergenic 30.0%
! TAATTCAACTGACTTAGCAA+CGG + chr1_2:58642712-58642731 None:intergenic 30.0%
! ATTGTTTCTTTCAGTGCTGT+GGG + chr1_2:58638890-58638909 None:intergenic 35.0%
!!! AACGATTTGGCACGTTTTTT+TGG - chr1_2:58639393-58639412 Msa0080370:intron 35.0%
TTTGAATTGTGTTGTGTGTC+CGG - chr1_2:58639537-58639556 Msa0080370:CDS 35.0%
TTTGTCTCTGTTTGTGTGTA+AGG - chr1_2:58639600-58639619 Msa0080370:CDS 35.0%
ATGCTATAAGCTGTGACTTA+CGG + chr1_2:58639785-58639804 None:intergenic 35.0%
TGTTGAATGCTAAAGATGGA+TGG - chr1_2:58640003-58640022 Msa0080370:intron 35.0%
GTTGAATGCTAAAGATGGAT+GGG - chr1_2:58640004-58640023 Msa0080370:intron 35.0%
GGTAAAATCTGAATGGAAGA+AGG - chr1_2:58640037-58640056 Msa0080370:intron 35.0%
!!! CAACCTTGTTTTATTGTTGC+TGG - chr1_2:58640149-58640168 Msa0080370:intron 35.0%
TTGAAAGATGATACTGAGGT+TGG - chr1_2:58640185-58640204 Msa0080370:intron 35.0%
CAAATGTTTGATATCTCCAC+AGG - chr1_2:58640214-58640233 Msa0080370:intron 35.0%
TATCCTTGTTGCTGAATTCA+GGG + chr1_2:58640288-58640307 None:intergenic 35.0%
TTATCCTTGTTGCTGAATTC+AGG + chr1_2:58640289-58640308 None:intergenic 35.0%
GTTCATGCTTGACAGAAAAT+TGG + chr1_2:58640324-58640343 None:intergenic 35.0%
GTTGATCAGAAGAAATTTGG+CGG - chr1_2:58640391-58640410 Msa0080370:CDS 35.0%
!!! CAGAATAGCGTGTACTTTTT+TGG + chr1_2:58640577-58640596 None:intergenic 35.0%
! TAAGTGGTTTGTGTCATTGT+AGG + chr1_2:58640601-58640620 None:intergenic 35.0%
CACAAACCACTTAATCAAGA+AGG - chr1_2:58640608-58640627 Msa0080370:intron 35.0%
GAACATCCTTCTTGATTAAG+TGG + chr1_2:58640617-58640636 None:intergenic 35.0%
ATGTGTAAACATGAGTAAGC+TGG + chr1_2:58640653-58640672 None:intergenic 35.0%
AATACTTACAGCCAGAAGAT+TGG - chr1_2:58640885-58640904 Msa0080370:CDS 35.0%
ATACTTACAGCCAGAAGATT+GGG - chr1_2:58640886-58640905 Msa0080370:CDS 35.0%
!! AGAGTAAAAGGTATTACCTC+TGG + chr1_2:58640950-58640969 None:intergenic 35.0%
CTAATACACAACATAGTAGG+TGG + chr1_2:58640995-58641014 None:intergenic 35.0%
CTCTGACATTCTGTATTTGT+AGG - chr1_2:58641022-58641041 Msa0080370:CDS 35.0%
ATACGATGACATTCCTAAAG+AGG - chr1_2:58641046-58641065 Msa0080370:CDS 35.0%
! TGGGAAACAACTAACCTTTT+TGG + chr1_2:58641087-58641106 None:intergenic 35.0%
AATAATTGTTGTGTAGCCTG+AGG - chr1_2:58641154-58641173 Msa0080370:intron 35.0%
TTTCCACACAAACAAACCTT+TGG + chr1_2:58641254-58641273 None:intergenic 35.0%
!!! TAACTTTTGGTGTTACGTCT+TGG - chr1_2:58641319-58641338 Msa0080370:CDS 35.0%
ATGCCAACATACTTCAACTT+GGG + chr1_2:58641533-58641552 None:intergenic 35.0%
AATGCCAACATACTTCAACT+TGG + chr1_2:58641534-58641553 None:intergenic 35.0%
! AGTATGTTGGCATTGAATTG+TGG - chr1_2:58641540-58641559 Msa0080370:CDS 35.0%
TTAACTTTGCAGGTGAAATC+TGG - chr1_2:58641641-58641660 Msa0080370:intron 35.0%
TGGTGAATATATGTTCTTGC+AGG - chr1_2:58641817-58641836 Msa0080370:intron 35.0%
AACTTCCTTAACTCATTGTC+AGG - chr1_2:58641973-58641992 Msa0080370:intron 35.0%
TGTTTCCTGACAATGAGTTA+AGG + chr1_2:58641981-58642000 None:intergenic 35.0%
AACTCATTGTCAGGAAACAA+AGG - chr1_2:58641982-58642001 Msa0080370:intron 35.0%
! TTTTCGCTTGCAGTTTTCAA+CGG + chr1_2:58642347-58642366 None:intergenic 35.0%
ATCAGCTGAAACAGTCTAAT+GGG + chr1_2:58642389-58642408 None:intergenic 35.0%
AATCAGCTGAAACAGTCTAA+TGG + chr1_2:58642390-58642409 None:intergenic 35.0%
GTTGCTAAGTCAGTTGAATT+AGG - chr1_2:58642711-58642730 Msa0080370:intron 35.0%
TAGCAATGGATGAGAAAAAG+TGG - chr1_2:58642771-58642790 Msa0080370:intron 35.0%
TACAACAGTAGCAAGTTAAG+AGG - chr1_2:58642809-58642828 Msa0080370:CDS 35.0%
TTGCTTACGTGGACAATATG+TGG + chr1_2:58638843-58638862 None:intergenic 40.0%
TTCAGTGCTGTGGGTAAATT+TGG + chr1_2:58638881-58638900 None:intergenic 40.0%
! CATTGTTTCTTTCAGTGCTG+TGG + chr1_2:58638891-58638910 None:intergenic 40.0%
AATGAGAGTGAGAGCTACTT+TGG + chr1_2:58638956-58638975 None:intergenic 40.0%
ATTCCATTGCAATGGCGATT+AGG - chr1_2:58639002-58639021 Msa0080370:intron 40.0%
TTCCATTGCAATGGCGATTA+GGG - chr1_2:58639003-58639022 Msa0080370:intron 40.0%
AGAAAAGAACGAGAGAGAGA+AGG + chr1_2:58639042-58639061 None:intergenic 40.0%
CAAACCAACATCATCACGTT+CGG + chr1_2:58639371-58639390 None:intergenic 40.0%
GGACTATCCTCAACGAAAAA+AGG + chr1_2:58639887-58639906 None:intergenic 40.0%
! TCCATTCAGATTTTACCCAC+CGG + chr1_2:58640034-58640053 None:intergenic 40.0%
ATGGAAGAAGGATGAGAACT+TGG - chr1_2:58640049-58640068 Msa0080370:intron 40.0%
! AATGGTGACGCTAATGACAA+AGG - chr1_2:58640104-58640123 Msa0080370:CDS 40.0%
!! TTCACTGGTTTGAATACCTG+TGG + chr1_2:58640233-58640252 None:intergenic 40.0%
CATGAACAGAAACTTGACTG+TGG - chr1_2:58640337-58640356 Msa0080370:intron 40.0%
GGTTACATGAAGTTGCTTAG+CGG - chr1_2:58640364-58640383 Msa0080370:intron 40.0%
AGCTAACATGTGTCATGTCT+TGG - chr1_2:58640467-58640486 Msa0080370:intron 40.0%
ATGTTTGGTCCAGATATCTG+TGG - chr1_2:58640543-58640562 Msa0080370:CDS 40.0%
GTACTGTAACCACAGATATC+TGG + chr1_2:58640555-58640574 None:intergenic 40.0%
AAAATGCTGTAGGTTGCATC+AGG + chr1_2:58640687-58640706 None:intergenic 40.0%
GATAATGTGGAGAAGCAAAC+TGG - chr1_2:58640711-58640730 Msa0080370:CDS 40.0%
TCTCCCACCAAAGAAAATCA+AGG - chr1_2:58640758-58640777 Msa0080370:intron 40.0%
! GGTCCTTGATTTTCTTTGGT+GGG + chr1_2:58640764-58640783 None:intergenic 40.0%
! TCTGGGTCCTTGATTTTCTT+TGG + chr1_2:58640768-58640787 None:intergenic 40.0%
AAAGAAAATCAAGGACCCAG+AGG - chr1_2:58640767-58640786 Msa0080370:intron 40.0%
!!! AGGTGAAAAGGGTACCTTTT+TGG + chr1_2:58640793-58640812 None:intergenic 40.0%
TCCTTATCATCCCAATCTTC+TGG + chr1_2:58640899-58640918 None:intergenic 40.0%
!! CAACTAACCTTTTTGGCATC+AGG + chr1_2:58641080-58641099 None:intergenic 40.0%
AGATGAATGGACACAGCAAT+GGG + chr1_2:58641106-58641125 None:intergenic 40.0%
! AAACAAACCTTTGGCTTCCA+TGG + chr1_2:58641245-58641264 None:intergenic 40.0%
! AAGCCAAAGGTTTGTTTGTG+TGG - chr1_2:58641248-58641267 Msa0080370:CDS 40.0%
TTCCACTTTCCACTGTAGTT+GGG + chr1_2:58641360-58641379 None:intergenic 40.0%
AAACCTGGGTTGTCAATCAA+TGG + chr1_2:58641387-58641406 None:intergenic 40.0%
CAAGGATGAAAAGCAAACCT+GGG + chr1_2:58641401-58641420 None:intergenic 40.0%
ACAAGGATGAAAAGCAAACC+TGG + chr1_2:58641402-58641421 None:intergenic 40.0%
TGGGGAAAACATAGATGTCA+GGG + chr1_2:58641514-58641533 None:intergenic 40.0%
TTGGGGAAAACATAGATGTC+AGG + chr1_2:58641515-58641534 None:intergenic 40.0%
! TTCCCCAAGTTGAAGTATGT+TGG - chr1_2:58641527-58641546 Msa0080370:CDS 40.0%
TGCCAACATACTTCAACTTG+GGG + chr1_2:58641532-58641551 None:intergenic 40.0%
! TGCAAAGTTAAGTAGCTTGC+TGG + chr1_2:58641632-58641651 None:intergenic 40.0%
AGCAAGCTACTTAACTTTGC+AGG - chr1_2:58641631-58641650 Msa0080370:intron 40.0%
! AGCAACTTGCTTAGCATACT+CGG + chr1_2:58641702-58641721 None:intergenic 40.0%
AGCAAGTTGCTGAAGAAACA+TGG - chr1_2:58641711-58641730 Msa0080370:intron 40.0%
GCAAGTTGCTGAAGAAACAT+GGG - chr1_2:58641712-58641731 Msa0080370:intron 40.0%
CAAGTTGCTGAAGAAACATG+GGG - chr1_2:58641713-58641732 Msa0080370:intron 40.0%
!!! CACTCAATCTTTTGGCCTTA+AGG - chr1_2:58641766-58641785 Msa0080370:intron 40.0%
AGCTGAGAAGAAGAAAGAAG+AGG - chr1_2:58641862-58641881 Msa0080370:intron 40.0%
TGAGAAGAAGAAAGAAGAGG+AGG - chr1_2:58641865-58641884 Msa0080370:intron 40.0%
AGAGTCATGGCTAACTTCAT+TGG + chr1_2:58642050-58642069 None:intergenic 40.0%
CAGCGATGAAACCAATAAAG+AGG - chr1_2:58642099-58642118 Msa0080370:intron 40.0%
ATGTACGTCGTCCTCTTTAT+TGG + chr1_2:58642113-58642132 None:intergenic 40.0%
TCATCCTGCAAACAAAAGGA+GGG + chr1_2:58642207-58642226 None:intergenic 40.0%
TAGGGAGTTTGCAAAGCATA+TGG - chr1_2:58642231-58642250 Msa0080370:intron 40.0%
TGCAAAGCATATGGCATATG+CGG - chr1_2:58642240-58642259 Msa0080370:intron 40.0%
TTTCAACGGTCTGCTTATCT+AGG + chr1_2:58642333-58642352 None:intergenic 40.0%
GGAATATTTCCAGCTAGCAA+TGG - chr1_2:58642757-58642776 Msa0080370:intron 40.0%
! TTTTCTCATCCATTGCTAGC+TGG + chr1_2:58642769-58642788 None:intergenic 40.0%
GGACAATATGTGGCAGATTG+TGG + chr1_2:58638833-58638852 None:intergenic 45.0%
! TTACGTGGATGTTGCTTACG+TGG + chr1_2:58638854-58638873 None:intergenic 45.0%
AACCCTAATCGCCATTGCAA+TGG + chr1_2:58639008-58639027 None:intergenic 45.0%
GAACGAGAGAGAGAAGGTTA+GGG + chr1_2:58639036-58639055 None:intergenic 45.0%
AGAACGAGAGAGAGAAGGTT+AGG + chr1_2:58639037-58639056 None:intergenic 45.0%
TGATCTGAACTGTCGTTGTC+TGG - chr1_2:58639323-58639342 Msa0080370:three_prime_UTR 45.0%
TAAGCACCTGTGAGACTCTA+TGG - chr1_2:58639706-58639725 Msa0080370:intron 45.0%
GTTCTTCCATAGAGTCTCAC+AGG + chr1_2:58639715-58639734 None:intergenic 45.0%
CTAAAGATGGATGGGAAAGC+CGG - chr1_2:58640012-58640031 Msa0080370:intron 45.0%
AAGAAGGATGAGAACTTGGC+CGG - chr1_2:58640053-58640072 Msa0080370:intron 45.0%
TACACCTCTGGTCAATGGAA+TGG - chr1_2:58640086-58640105 Msa0080370:CDS 45.0%
GTTCCCTGAATTCAGCAACA+AGG - chr1_2:58640282-58640301 Msa0080370:intron 45.0%
GAACAGAAACTTGACTGTGG+TGG - chr1_2:58640340-58640359 Msa0080370:intron 45.0%
CTGGTAGTCTTTACTCTGAC+TGG - chr1_2:58640730-58640749 Msa0080370:intron 45.0%
! GGGTCCTTGATTTTCTTTGG+TGG + chr1_2:58640765-58640784 None:intergenic 45.0%
GCCAGAAGATTGGGATGATA+AGG - chr1_2:58640895-58640914 Msa0080370:CDS 45.0%
TCAGGATCAGCAACCTCTTT+AGG + chr1_2:58641062-58641081 None:intergenic 45.0%
TGCTGATCCTGATGCCAAAA+AGG - chr1_2:58641070-58641089 Msa0080370:CDS 45.0%
GAGATGAATGGACACAGCAA+TGG + chr1_2:58641107-58641126 None:intergenic 45.0%
ATGATGAGGAAGATGGTGAG+TGG - chr1_2:58641183-58641202 Msa0080370:intron 45.0%
ATTGCCAACCCAGAGTACAA+GGG - chr1_2:58641218-58641237 Msa0080370:CDS 45.0%
ATCAAGAACCCCAACTACAG+TGG - chr1_2:58641348-58641367 Msa0080370:CDS 45.0%
TCCACTTTCCACTGTAGTTG+GGG + chr1_2:58641359-58641378 None:intergenic 45.0%
CTTCCACTTTCCACTGTAGT+TGG + chr1_2:58641361-58641380 None:intergenic 45.0%
CAACTACAGTGGAAAGTGGA+AGG - chr1_2:58641359-58641378 Msa0080370:CDS 45.0%
! TGTTGGCATTGAATTGTGGC+AGG - chr1_2:58641544-58641563 Msa0080370:CDS 45.0%
CTTAGCATACTCGGGATCAT+CGG + chr1_2:58641693-58641712 None:intergenic 45.0%
! GCAACTTGCTTAGCATACTC+GGG + chr1_2:58641701-58641720 None:intergenic 45.0%
AGAAACATGGGGCAAGCAAA+AGG - chr1_2:58641724-58641743 Msa0080370:intron 45.0%
TATGTTCTTGCAGGCTGAGA+AGG - chr1_2:58641826-58641845 Msa0080370:intron 45.0%
!! TGATCCCGTTGATTCTGATG+CGG - chr1_2:58642006-58642025 Msa0080370:intron 45.0%
TCTTCCGCATCAGAATCAAC+GGG + chr1_2:58642013-58642032 None:intergenic 45.0%
CTCTTCCGCATCAGAATCAA+CGG + chr1_2:58642014-58642033 None:intergenic 45.0%
CCTTTGACTCATCAGAGTCA+TGG + chr1_2:58642063-58642082 None:intergenic 45.0%
CCATGACTCTGATGAGTCAA+AGG - chr1_2:58642060-58642079 Msa0080370:intron 45.0%
!! TTTCCCCTCCTTTTGTTTGC+AGG - chr1_2:58642200-58642219 Msa0080370:intron 45.0%
CATCCTGCAAACAAAAGGAG+GGG + chr1_2:58642206-58642225 None:intergenic 45.0%
CTCATCCTGCAAACAAAAGG+AGG + chr1_2:58642208-58642227 None:intergenic 45.0%
GAGCTCATCCTGCAAACAAA+AGG + chr1_2:58642211-58642230 None:intergenic 45.0%
TTGTTTGCAGGATGAGCTCT+AGG - chr1_2:58642212-58642231 Msa0080370:intron 45.0%
TGTTTGCAGGATGAGCTCTA+GGG - chr1_2:58642213-58642232 Msa0080370:intron 45.0%
TGTGGCAGATTGTGGCCATT+GGG + chr1_2:58638825-58638844 None:intergenic 50.0%
ATGTGGCAGATTGTGGCCAT+TGG + chr1_2:58638826-58638845 None:intergenic 50.0%
AGCGAGCGATTCCATTGCAA+TGG - chr1_2:58638994-58639013 Msa0080370:intron 50.0%
CGCAGAAGCGATGGATAGAA+GGG + chr1_2:58639065-58639084 None:intergenic 50.0%
TCGCAGAAGCGATGGATAGA+AGG + chr1_2:58639066-58639085 None:intergenic 50.0%
TCTATCCATCGCTTCTGCGA+AGG - chr1_2:58639066-58639085 Msa0080370:three_prime_UTR 50.0%
GAAAACCTTCGCAGAAGCGA+TGG + chr1_2:58639074-58639093 None:intergenic 50.0%
!! TTCTTCGAAGAGCGCTTCGA+AGG - chr1_2:58639091-58639110 Msa0080370:three_prime_UTR 50.0%
! TGCACCGAACGTGATGATGT+TGG - chr1_2:58639364-58639383 Msa0080370:three_prime_UTR 50.0%
GCCGGTGGGTAAAATCTGAA+TGG - chr1_2:58640030-58640049 Msa0080370:intron 50.0%
AGAAGGATGAGAACTTGGCC+GGG - chr1_2:58640054-58640073 Msa0080370:intron 50.0%
GGAACTACACCTCTGGTCAA+TGG - chr1_2:58640081-58640100 Msa0080370:CDS 50.0%
GTCACCATTCCATTGACCAG+AGG + chr1_2:58640093-58640112 None:intergenic 50.0%
TTCAGGGAACTCAGCAGAGA+TGG + chr1_2:58640272-58640291 None:intergenic 50.0%
CAGAAACTTGACTGTGGTGG+TGG - chr1_2:58640343-58640362 Msa0080370:intron 50.0%
GTAAGCTGGTCAGTCTCACA+AGG + chr1_2:58640639-58640658 None:intergenic 50.0%
TGCTGTAGGTTGCATCAGGA+CGG + chr1_2:58640683-58640702 None:intergenic 50.0%
!! AGGGTACCTTTTTGGCCTCT+GGG + chr1_2:58640785-58640804 None:intergenic 50.0%
!!! AAGGGTACCTTTTTGGCCTC+TGG + chr1_2:58640786-58640805 None:intergenic 50.0%
! CCTCTGGCTTCTTGTCTTCA+GGG + chr1_2:58640934-58640953 None:intergenic 50.0%
! ACCTCTGGCTTCTTGTCTTC+AGG + chr1_2:58640935-58640954 None:intergenic 50.0%
TTGTTGTGTAGCCTGAGGAC+TGG - chr1_2:58641159-58641178 Msa0080370:intron 50.0%
TGTTGTGTAGCCTGAGGACT+GGG - chr1_2:58641160-58641179 Msa0080370:intron 50.0%
GACTGGGATGATGAGGAAGA+TGG - chr1_2:58641176-58641195 Msa0080370:intron 50.0%
!! TACTCTGGGTTGGCAATGGT+AGG + chr1_2:58641215-58641234 None:intergenic 50.0%
!! CTTGTACTCTGGGTTGGCAA+TGG + chr1_2:58641219-58641238 None:intergenic 50.0%
CATTGCCAACCCAGAGTACA+AGG - chr1_2:58641217-58641236 Msa0080370:CDS 50.0%
TCCATGGTCCCTTGTACTCT+GGG + chr1_2:58641229-58641248 None:intergenic 50.0%
TTCCATGGTCCCTTGTACTC+TGG + chr1_2:58641230-58641249 None:intergenic 50.0%
ACCCCAACTACAGTGGAAAG+TGG - chr1_2:58641355-58641374 Msa0080370:CDS 50.0%
! GCACCATTGATTGACAACCC+AGG - chr1_2:58641381-58641400 Msa0080370:intron 50.0%
!! GTAGCTTGCTGGTCAGAGTT+TGG + chr1_2:58641621-58641640 None:intergenic 50.0%
!! CGTTGATTCTGATGCGGAAG+AGG - chr1_2:58642012-58642031 Msa0080370:intron 50.0%
TTCTGATGCGGAAGAGGATG+AGG - chr1_2:58642018-58642037 Msa0080370:intron 50.0%
GATGAGTCAAAGGCAGAAGC+TGG - chr1_2:58642070-58642089 Msa0080370:intron 50.0%
ATTGGGTGAGTGCCACGTAC+GGG + chr1_2:58638808-58638827 None:intergenic 55.0%
CATTGGGTGAGTGCCACGTA+CGG + chr1_2:58638809-58638828 None:intergenic 55.0%
AAGATGGATGGGAAAGCCGG+TGG - chr1_2:58640015-58640034 Msa0080370:intron 55.0%
AGATGGATGGGAAAGCCGGT+GGG - chr1_2:58640016-58640035 Msa0080370:intron 55.0%
GAAGGATGAGAACTTGGCCG+GGG - chr1_2:58640055-58640074 Msa0080370:intron 55.0%
! AGAGGTGTAGTTCCACTCCC+CGG + chr1_2:58640075-58640094 None:intergenic 55.0%
CAAGGACCCAGAGGCCAAAA+AGG - chr1_2:58640776-58640795 Msa0080370:intron 55.0%
GGCTTCTTGTCTTCAGGGTC+AGG + chr1_2:58640929-58640948 None:intergenic 55.0%
CCCTGAAGACAAGAAGCCAG+AGG - chr1_2:58640931-58640950 Msa0080370:CDS 55.0%
TCCTCATCATCCCAGTCCTC+AGG + chr1_2:58641173-58641192 None:intergenic 55.0%
TGGTCCCTTGTACTCTGGGT+TGG + chr1_2:58641225-58641244 None:intergenic 55.0%
ACCCAGAGTACAAGGGACCA+TGG - chr1_2:58641225-58641244 Msa0080370:CDS 55.0%
CAAGGGACCATGGAAGCCAA+AGG - chr1_2:58641235-58641254 Msa0080370:CDS 55.0%
TCAGGGTCGTCCTTGAAGTC+TGG + chr1_2:58641497-58641516 None:intergenic 55.0%
CGTACGTGGCACTCACCCAA+TGG - chr1_2:58638807-58638826 Msa0080370:three_prime_UTR 60.0%
ATGAGAACTTGGCCGGGGAG+TGG - chr1_2:58640060-58640079 Msa0080370:intron 60.0%
GGGGAGTGGAACTACACCTC+TGG - chr1_2:58640074-58640093 Msa0080370:CDS 60.0%
TTGGCGGTGACACTCCCTAC+AGG - chr1_2:58640407-58640426 Msa0080370:CDS 60.0%
GCCTGAGGACTGGGATGATG+AGG - chr1_2:58641169-58641188 Msa0080370:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 58638794 58642836 58638794 ID=Msa0080370;Name=Msa0080370
chr1_2 mRNA 58638794 58642836 58638794 ID=Msa0080370-mRNA-1;Parent=Msa0080370;Name=Msa0080370-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.92|0.86|1|0.92|0.86|15|552|449
chr1_2 exon 58638794 58638958 58638794 ID=Msa0080370-mRNA-1:exon:18855;Parent=Msa0080370-mRNA-1
chr1_2 exon 58639010 58639408 58639010 ID=Msa0080370-mRNA-1:exon:18854;Parent=Msa0080370-mRNA-1
chr1_2 exon 58639498 58639635 58639498 ID=Msa0080370-mRNA-1:exon:18853;Parent=Msa0080370-mRNA-1
chr1_2 exon 58639744 58639791 58639744 ID=Msa0080370-mRNA-1:exon:18852;Parent=Msa0080370-mRNA-1
chr1_2 exon 58639882 58639977 58639882 ID=Msa0080370-mRNA-1:exon:18851;Parent=Msa0080370-mRNA-1
chr1_2 exon 58640065 58640132 58640065 ID=Msa0080370-mRNA-1:exon:18850;Parent=Msa0080370-mRNA-1
chr1_2 exon 58640228 58640285 58640228 ID=Msa0080370-mRNA-1:exon:18849;Parent=Msa0080370-mRNA-1
chr1_2 exon 58640374 58640460 58640374 ID=Msa0080370-mRNA-1:exon:18848;Parent=Msa0080370-mRNA-1
chr1_2 exon 58640539 58640586 58640539 ID=Msa0080370-mRNA-1:exon:18847;Parent=Msa0080370-mRNA-1
chr1_2 exon 58640678 58640734 58640678 ID=Msa0080370-mRNA-1:exon:18846;Parent=Msa0080370-mRNA-1
chr1_2 exon 58640833 58641091 58640833 ID=Msa0080370-mRNA-1:exon:18845;Parent=Msa0080370-mRNA-1
chr1_2 exon 58641202 58641394 58641202 ID=Msa0080370-mRNA-1:exon:18844;Parent=Msa0080370-mRNA-1
chr1_2 exon 58641505 58641612 58641505 ID=Msa0080370-mRNA-1:exon:18843;Parent=Msa0080370-mRNA-1
chr1_2 exon 58642518 58642634 58642518 ID=Msa0080370-mRNA-1:exon:18842;Parent=Msa0080370-mRNA-1
chr1_2 exon 58642776 58642836 58642776 ID=Msa0080370-mRNA-1:exon:18841;Parent=Msa0080370-mRNA-1
chr1_2 CDS 58642776 58642836 58642776 ID=Msa0080370-mRNA-1:cds;Parent=Msa0080370-mRNA-1
chr1_2 CDS 58642518 58642634 58642518 ID=Msa0080370-mRNA-1:cds;Parent=Msa0080370-mRNA-1
chr1_2 CDS 58641505 58641612 58641505 ID=Msa0080370-mRNA-1:cds;Parent=Msa0080370-mRNA-1
chr1_2 CDS 58641202 58641394 58641202 ID=Msa0080370-mRNA-1:cds;Parent=Msa0080370-mRNA-1
chr1_2 CDS 58640833 58641091 58640833 ID=Msa0080370-mRNA-1:cds;Parent=Msa0080370-mRNA-1
chr1_2 CDS 58640678 58640734 58640678 ID=Msa0080370-mRNA-1:cds;Parent=Msa0080370-mRNA-1
chr1_2 CDS 58640539 58640586 58640539 ID=Msa0080370-mRNA-1:cds;Parent=Msa0080370-mRNA-1
chr1_2 CDS 58640374 58640460 58640374 ID=Msa0080370-mRNA-1:cds;Parent=Msa0080370-mRNA-1
chr1_2 CDS 58640228 58640285 58640228 ID=Msa0080370-mRNA-1:cds;Parent=Msa0080370-mRNA-1
chr1_2 CDS 58640065 58640132 58640065 ID=Msa0080370-mRNA-1:cds;Parent=Msa0080370-mRNA-1
chr1_2 CDS 58639882 58639977 58639882 ID=Msa0080370-mRNA-1:cds;Parent=Msa0080370-mRNA-1
chr1_2 CDS 58639744 58639791 58639744 ID=Msa0080370-mRNA-1:cds;Parent=Msa0080370-mRNA-1
chr1_2 CDS 58639498 58639635 58639498 ID=Msa0080370-mRNA-1:cds;Parent=Msa0080370-mRNA-1
chr1_2 CDS 58639397 58639408 58639397 ID=Msa0080370-mRNA-1:cds;Parent=Msa0080370-mRNA-1
chr1_2 three_prime_UTR 58639010 58639396 58639010 ID=Msa0080370-mRNA-1:three_prime_utr;Parent=Msa0080370-mRNA-1
chr1_2 three_prime_UTR 58638794 58638958 58638794 ID=Msa0080370-mRNA-1:three_prime_utr;Parent=Msa0080370-mRNA-1
Gene Sequence

>Msa0080370

ATGACAATCTTCCCGTACGTGGCACTCACCCAATGGCCACAATCTGCCACATATTGTCCACCGAGCGATTCCATTGCAATGGCGATTAGGGTTCGCAACCCTAACCTTCTCTCTCTCGTTCTTTTCTCCCTTCTATCCATCGCTTCTGCGAAGGTTTTCTTCGAAGAGCGCTTCGAAGATGGATGGGAAAGCCGGTGGGTAAAATCTGAATGGAAGAAGGATGAGAACTTGGCCGGGGAGTGGAACTACACCTCTGGTCAATGGAATGGTGACGCTAATGACAAAGGTATTCAAACCAGTGAAGATTACAGATTTTATGCCATCTCTGCTGAGTTCCCTGAATTCAGCAACAAGGATAACACACTAGTCTTCCAATTTTCTGTCAAGCATGAACAGAAACTTGACTGTGGTGGTGGTTACATGAAGTTGCTTAGCGGCGATGTTGATCAGAAGAAATTTGGCGGTGACACTCCCTACAGTATCATGTTTGGTCCAGATATCTGTGGTTACAGTACCAAAAAAGTACACGCTATTCTGACCTACAATGACACAAACCACTTAATCAAGAAGGATGTTCCTTGTGAGACTGACCAGCTTACTCATGTTTACACATTCATCATCCGTCCTGATGCAACCTACAGCATTTTGATTGATAATGTGGAGAAGCAAACTGGTAGTCTTTACTCTGACTGGAGTCTTCTCCCACCAAAGAAAATCAAGGACCCAGAGGCCAAAAAGCCAGAAGATTGGGATGATAAGGAGTTTATTCCTGACCCTGAAGACAAGAAGCCAGAGGGATACGATGACATTCCTAAAGAGGTTGCTGATCCTGATGCCAAAAAGCCTGAGGACTGGGATGATGAGGAAGATGGTGAGTGGACAGCACCTACCATTGCCAACCCAGAGTACAAGGGACCATGGAAGCCAAAGAAAATCAAGAACCCCAACTACAGTGGAAAGTGGAAGGCACCATTGATTGACAACCCAGACTTCAAGGACGACCCTGACATCTATGTTTTCCCCAAGTTGAAGTATGTTGGCATTGAATTGTGGCAGGTGAAATCTGGTACATTGTTTGACAATGTTGTCATTACCGATGATCCCGAGTATGCTAAGCAAGTTGCTGAAGAAACATGGGGCAAGCAAAAGGATGCTGAGAAGGCAGCATTTGAAGAAGCTGAGAAGAAGAAAGAAGAGGAGGAAACAAAGGATGATCCCGTTGATTCTGATGCGGAAGAGGATGAGGAAGATGCCAATGAAGTTAGCCATGACTCTGATGAGTCAAAGGCAGAAGCTGGTGAAGACAGCGATGAAACCAATAAAGAGGACGACGTACATGATGAGCTCTAG

Protein sequence

>Msa0080370

MTIFPYVALTQWPQSATYCPPSDSIAMAIRVRNPNLLSLVLFSLLSIASAKVFFEERFEDGWESRWVKSEWKKDENLAGEWNYTSGQWNGDANDKGIQTSEDYRFYAISAEFPEFSNKDNTLVFQFSVKHEQKLDCGGGYMKLLSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNDTNHLIKKDVPCETDQLTHVYTFIIRPDATYSILIDNVEKQTGSLYSDWSLLPPKKIKDPEAKKPEDWDDKEFIPDPEDKKPEGYDDIPKEVADPDAKKPEDWDDEEDGEWTAPTIANPEYKGPWKPKKIKNPNYSGKWKAPLIDNPDFKDDPDIYVFPKLKYVGIELWQVKSGTLFDNVVITDDPEYAKQVAEETWGKQKDAEKAAFEEAEKKKEEEETKDDPVDSDAEEDEEDANEVSHDSDESKAEAGEDSDETNKEDDVHDEL*