AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0713080


Find 227 sgRNAs with CRISPR-Local

Find 827 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-GE

Chromosome Type Strat End Strand Name
chr5_1 gene 4958527 4971408 4958527 ID=Msa0713080;Name=Msa0713080
chr5_1 mRNA 4958527 4971408 4958527 ID=Msa0713080-mRNA-1;Parent=Msa0713080;Name=Msa0713080-mRNA-1;_AED=0.13;_eAED=0.13;_QI=111|0.90|0.86|1|0.90|0.86|23|26|1098
chr5_1 exon 4958527 4959162 4958527 ID=Msa0713080-mRNA-1:exon:2104;Parent=Msa0713080-mRNA-1
chr5_1 exon 4959500 4959603 4959500 ID=Msa0713080-mRNA-1:exon:2103;Parent=Msa0713080-mRNA-1
chr5_1 exon 4959677 4959746 4959677 ID=Msa0713080-mRNA-1:exon:2102;Parent=Msa0713080-mRNA-1
chr5_1 exon 4959834 4959877 4959834 ID=Msa0713080-mRNA-1:exon:2101;Parent=Msa0713080-mRNA-1
chr5_1 exon 4960507 4960557 4960507 ID=Msa0713080-mRNA-1:exon:2100;Parent=Msa0713080-mRNA-1
chr5_1 exon 4960639 4960757 4960639 ID=Msa0713080-mRNA-1:exon:2099;Parent=Msa0713080-mRNA-1
chr5_1 exon 4961103 4961190 4961103 ID=Msa0713080-mRNA-1:exon:2098;Parent=Msa0713080-mRNA-1
chr5_1 exon 4961406 4961492 4961406 ID=Msa0713080-mRNA-1:exon:2097;Parent=Msa0713080-mRNA-1
chr5_1 exon 4961574 4961642 4961574 ID=Msa0713080-mRNA-1:exon:2096;Parent=Msa0713080-mRNA-1
chr5_1 exon 4963697 4963809 4963697 ID=Msa0713080-mRNA-1:exon:2095;Parent=Msa0713080-mRNA-1
chr5_1 exon 4963834 4964026 4963834 ID=Msa0713080-mRNA-1:exon:2094;Parent=Msa0713080-mRNA-1
chr5_1 exon 4964115 4964181 4964115 ID=Msa0713080-mRNA-1:exon:2093;Parent=Msa0713080-mRNA-1
chr5_1 exon 4964262 4964320 4964262 ID=Msa0713080-mRNA-1:exon:2092;Parent=Msa0713080-mRNA-1
chr5_1 exon 4965245 4965487 4965245 ID=Msa0713080-mRNA-1:exon:2091;Parent=Msa0713080-mRNA-1
chr5_1 exon 4965571 4965636 4965571 ID=Msa0713080-mRNA-1:exon:2090;Parent=Msa0713080-mRNA-1
chr5_1 exon 4965743 4965945 4965743 ID=Msa0713080-mRNA-1:exon:2089;Parent=Msa0713080-mRNA-1
chr5_1 exon 4966380 4966473 4966380 ID=Msa0713080-mRNA-1:exon:2088;Parent=Msa0713080-mRNA-1
chr5_1 exon 4966621 4966740 4966621 ID=Msa0713080-mRNA-1:exon:2087;Parent=Msa0713080-mRNA-1
chr5_1 exon 4966832 4966936 4966832 ID=Msa0713080-mRNA-1:exon:2086;Parent=Msa0713080-mRNA-1
chr5_1 exon 4968520 4968622 4968520 ID=Msa0713080-mRNA-1:exon:2085;Parent=Msa0713080-mRNA-1
chr5_1 exon 4968739 4968773 4968739 ID=Msa0713080-mRNA-1:exon:2084;Parent=Msa0713080-mRNA-1
chr5_1 exon 4968991 4969404 4968991 ID=Msa0713080-mRNA-1:exon:2083;Parent=Msa0713080-mRNA-1
chr5_1 exon 4971058 4971408 4971058 ID=Msa0713080-mRNA-1:exon:2082;Parent=Msa0713080-mRNA-1
chr5_1 five_prime_UTR 4971298 4971408 4971298 ID=Msa0713080-mRNA-1:five_prime_utr;Parent=Msa0713080-mRNA-1
chr5_1 CDS 4971058 4971297 4971058 ID=Msa0713080-mRNA-1:cds;Parent=Msa0713080-mRNA-1
chr5_1 CDS 4968991 4969404 4968991 ID=Msa0713080-mRNA-1:cds;Parent=Msa0713080-mRNA-1
chr5_1 CDS 4968739 4968773 4968739 ID=Msa0713080-mRNA-1:cds;Parent=Msa0713080-mRNA-1
chr5_1 CDS 4968520 4968622 4968520 ID=Msa0713080-mRNA-1:cds;Parent=Msa0713080-mRNA-1
chr5_1 CDS 4966832 4966936 4966832 ID=Msa0713080-mRNA-1:cds;Parent=Msa0713080-mRNA-1
chr5_1 CDS 4966621 4966740 4966621 ID=Msa0713080-mRNA-1:cds;Parent=Msa0713080-mRNA-1
chr5_1 CDS 4966380 4966473 4966380 ID=Msa0713080-mRNA-1:cds;Parent=Msa0713080-mRNA-1
chr5_1 CDS 4965743 4965945 4965743 ID=Msa0713080-mRNA-1:cds;Parent=Msa0713080-mRNA-1
chr5_1 CDS 4965571 4965636 4965571 ID=Msa0713080-mRNA-1:cds;Parent=Msa0713080-mRNA-1
chr5_1 CDS 4965245 4965487 4965245 ID=Msa0713080-mRNA-1:cds;Parent=Msa0713080-mRNA-1
chr5_1 CDS 4964262 4964320 4964262 ID=Msa0713080-mRNA-1:cds;Parent=Msa0713080-mRNA-1
chr5_1 CDS 4964115 4964181 4964115 ID=Msa0713080-mRNA-1:cds;Parent=Msa0713080-mRNA-1
chr5_1 CDS 4963834 4964026 4963834 ID=Msa0713080-mRNA-1:cds;Parent=Msa0713080-mRNA-1
chr5_1 CDS 4963697 4963809 4963697 ID=Msa0713080-mRNA-1:cds;Parent=Msa0713080-mRNA-1
chr5_1 CDS 4961574 4961642 4961574 ID=Msa0713080-mRNA-1:cds;Parent=Msa0713080-mRNA-1
chr5_1 CDS 4961406 4961492 4961406 ID=Msa0713080-mRNA-1:cds;Parent=Msa0713080-mRNA-1
chr5_1 CDS 4961103 4961190 4961103 ID=Msa0713080-mRNA-1:cds;Parent=Msa0713080-mRNA-1
chr5_1 CDS 4960639 4960757 4960639 ID=Msa0713080-mRNA-1:cds;Parent=Msa0713080-mRNA-1
chr5_1 CDS 4960507 4960557 4960507 ID=Msa0713080-mRNA-1:cds;Parent=Msa0713080-mRNA-1
chr5_1 CDS 4959834 4959877 4959834 ID=Msa0713080-mRNA-1:cds;Parent=Msa0713080-mRNA-1
chr5_1 CDS 4959677 4959746 4959677 ID=Msa0713080-mRNA-1:cds;Parent=Msa0713080-mRNA-1
chr5_1 CDS 4959500 4959603 4959500 ID=Msa0713080-mRNA-1:cds;Parent=Msa0713080-mRNA-1
chr5_1 CDS 4958553 4959162 4958553 ID=Msa0713080-mRNA-1:cds;Parent=Msa0713080-mRNA-1
chr5_1 three_prime_UTR 4958527 4958552 4958527 ID=Msa0713080-mRNA-1:three_prime_utr;Parent=Msa0713080-mRNA-1
Gene Sequence

>Msa0713080

ATGACGGAGGAATCGCCGCCGGAGGTGTTTCAAGCAGAGCATGCAGACGAGTCCCAGCGATCTCCGGTGGTGAAATCGGCTCCTTCCGATGTAATTGACGGCAATGTGCGTTCTAACGGAAAATCTGGAAGGAAGAAAGGTAGGGTTTCTGAGATGAAATTGTCCGAGGAGAATCGACGACGGTCGCCGAGATTATCAGGTGCATCTGACGGAAGAGGCTCTTCTTCTTGTTCTGTTAAGCTGCGAAGAACTCGATCTTCAAATGGGATTGAAAACACGCAATTAGTTTTTTCTCAAGGAAAAAGAACCCCAAAGGTAGTTCACGAAAAGAACAAAAAAAGAAAAGTGAATTCCATTTCCATTGAATTGTCTAATTCACCAGTGGAACAACATTCTCCTGAAGTTGACGATATAAACTGCTCAGCACTGTCTCTGGACGAAATCACATCCCCAACCTGGTTTGAAAATGGCGGAACAAATTCTGATTATTTTGCCTCGTCTGTGTTAAAAGGCAAGCCACCAAAAAAGAAGTTTAAATCATCTGCTTCATCAACGAAAGGATGTATGTATGGGAGAAACATTCCGTCATTCATTGGTGATCCAATACCTGATGATGAAGCTCATAAAAAATGGGGATGGCGTTACGAATTGAAGGACAAACAATGTAATGATAAGGTGTTCATAATAAATGAGGATGAAGAAGACGAGACAATTATAAATGTTAAATGCCATTATGCCCAAGCTATCATTGGGAACTGCATTTTCACTGTTGGCGATTGTGCATCTATAAAAGGTGAAGGAGAACAAAAACATATTGGCAAGATTGTTGAATTTTTCCTAACAACTGATAGCAAAAAGTATTTCCGAGTCCAATGGTTTTACAGAATTCAAGATACAGTTGTCCAAGATGAAGGTGATTATCATGACAAGAGGCGTTTATTCTATTCATCAATAATGAATGATAATTTAATAGATTCCATAATAGAGAAAGTCAGTGTTAGATATAGAACACCTAAGGTTGGTCAGAAGTTGGCTTCTAATTTACCATCTGACTTCTATTATGATATGGAATATTGCGTTGATTACTCTACATTCCGTAAAATACCAACAGATGATGCTGTTGAGATTAACAAGTTATCACAACCTGCTGTTCTTGAGAGTCACTCAACAGAGGCATCTACTATTACCAAGAGTCTGCCTAATCCTGAGTTGCACAGAACAGAACTAGCATTACTAGATCTTTATTCTGGCTGTGGTGGCATGTCAACTGGACTGTGCTTAGGTGCCAAAATATCATCAGTTAATCTTGTCACGAGATGGGCTGTTGATAGTAATAGATATGCAAGTAAAAGCTTAAAACTAAACCATCCAGAGACACATGTGAGAAATGAATCTGCAGAGGACTTTCTGCAACTATTGAAGGAGTGGGAGAAGCTATGCAAACGGTATAATGTTGGCGACACAAAAAATAAAATTCCATTACGGTCAAGGAACTCAGGAGGAAAGAAGCAAGTGAATTCTAAAGCTGATGATAGTTCTGATGATGATTTTGAAGTATCTAGGATTGTTGATATATGCTACGGTGATCCCAGTAAAACAGAGAAACATGGTCTATATTTGAAGGTACACTGGAAGGGTTACGATGAAAGTGAAGATACATGGGAACCAATTGAAAACTTACGCAATTGTAAGGAAAGCTTGCAGGAGTTTGTGAGAGAGGGCATACAATCAAAACTCTTGCCCCTTCCTGGTGAAGTTGATGTTGTTTGTGGAGGTCCTCCTTGTCAAGGAATTAGTGGATATAATCGTTATAGAAACATGGAATCACCATTGGACGATGAAAGAAATCACCAGATAGTAGTTTTCATGGACATAGCGACATATCTGAAGCCTAAGTATGTTTTAATGGAGAATGTGGTTGACATATTGAGATTTGACAAGGGTCGTCTGGTACACATGCATTACCAAGCAAGATTGGGAATTGTTGCAGCTGGCTGTTATGGTCTTCCACAATTTCGATTGCGTGTTTTCATGTGGGGGGCTCATCCTGATGAGGTTCTACCCCAATTTCCATTGCCATCACATGATGTTATTATGAGATACTGGCCTCCGCCTGAGTTTGAGCGCAATACTGTTGCTTATGATGAGGAACAACAACGAGAAGTAGAGGAAGCTCTTGTAATTCAAGATGCCATCTCTGATCTTCCTCCTGTCACAAACTTTGAAACTCGGGACGAAATGCCATACCAAAATCCTCCAGAAACAGAATTTCAAAGATATATACGATCAACTAAACATGAGGTGACTGGATCCACATTAAATGGAGCAACAAAGAAAAAGCATATGTTATATGATCACAGACCCCTCTTTATGTCTGAAGATGACTACCTACGTGTTTGTCAAATTCCCAAACGGAAGGGAGCAAATTTCCGTGATCTTCCTGGAATTGTTGTAGGATCTGACAATGTGGTCCCAGATTACTGCTTCACTTATGAACAGGGGAGGTCCAAGAGGCCATTTGGACGATTGTGGTGGGATGAAACGGTTCCTACCGCACTAACCAGCCCAAGTTGTCATAACCAGGTAGTAATACATCCAGAGCAGGATCGAATCCTCACCATACGAGAATTTGCCAGGCTGCAAGGATTTCATGATTATTATAGATTTTGTGGGTCTGTGAAAGAAAGGTACCGTCAAATTGGAAATGCAGTTGCTGTACCTGTTTCGCGAGCTTTAGGATATGCCCTAGGAATTGCACATAGAAAGCTTGGTAGTAATGAACATCATATGACCCTCCCACCCAAGTTCTCTCTTTCCAATTATGTTCAATTATCAAGTAATCATGTCGGCGACACGACCTTTTTTGAGTCGAAGGATGTTGTCAGTGCTGCTGTTCTTGAGCCAAAAGATGTTGGCGACACCACTATTCTTGAGTCGAAAGATGTTGGCGATACTGCCATTTTTGAGTCGAAAGATGTTTGTGAAACCGCCATTCTTGAGCCAAAAGATGTTGGCGACACCACTATTCTTGAGTCGAAAGATGTTGGCGATACTGCCATTTTTGAGTCGAAAGATGTTTGTGAAATCGCCATTCTTGAGTCGACAGATGTTTGTGGAACTGCCATTTCTGAGTCGAAAAATGTTGGCGACACCATTATTCTTGAGTCGAAAGATGTCGGCGATACCACCCTTTTTGAGTCGAAAGATGTTGGCGATGTTAACACTCATGAGTTGAAAGATGTTTGTGAAACTGCCATTCTTGAGTCGACAGATGTTTGTGAAACTGCCATTTTTTAG

Protein sequence

>Msa0713080

MTEESPPEVFQAEHADESQRSPVVKSAPSDVIDGNVRSNGKSGRKKGRVSEMKLSEENRRRSPRLSGASDGRGSSSCSVKLRRTRSSNGIENTQLVFSQGKRTPKVVHEKNKKRKVNSISIELSNSPVEQHSPEVDDINCSALSLDEITSPTWFENGGTNSDYFASSVLKGKPPKKKFKSSASSTKGCMYGRNIPSFIGDPIPDDEAHKKWGWRYELKDKQCNDKVFIINEDEEDETIINVKCHYAQAIIGNCIFTVGDCASIKGEGEQKHIGKIVEFFLTTDSKKYFRVQWFYRIQDTVVQDEGDYHDKRRLFYSSIMNDNLIDSIIEKVSVRYRTPKVGQKLASNLPSDFYYDMEYCVDYSTFRKIPTDDAVEINKLSQPAVLESHSTEASTITKSLPNPELHRTELALLDLYSGCGGMSTGLCLGAKISSVNLVTRWAVDSNRYASKSLKLNHPETHVRNESAEDFLQLLKEWEKLCKRYNVGDTKNKIPLRSRNSGGKKQVNSKADDSSDDDFEVSRIVDICYGDPSKTEKHGLYLKVHWKGYDESEDTWEPIENLRNCKESLQEFVREGIQSKLLPLPGEVDVVCGGPPCQGISGYNRYRNMESPLDDERNHQIVVFMDIATYLKPKYVLMENVVDILRFDKGRLVHMHYQARLGIVAAGCYGLPQFRLRVFMWGAHPDEVLPQFPLPSHDVIMRYWPPPEFERNTVAYDEEQQREVEEALVIQDAISDLPPVTNFETRDEMPYQNPPETEFQRYIRSTKHEVTGSTLNGATKKKHMLYDHRPLFMSEDDYLRVCQIPKRKGANFRDLPGIVVGSDNVVPDYCFTYEQGRSKRPFGRLWWDETVPTALTSPSCHNQVVIHPEQDRILTIREFARLQGFHDYYRFCGSVKERYRQIGNAVAVPVSRALGYALGIAHRKLGSNEHHMTLPPKFSLSNYVQLSSNHVGDTTFFESKDVVSAAVLEPKDVGDTTILESKDVGDTAIFESKDVCETAILEPKDVGDTTILESKDVGDTAIFESKDVCEIAILESTDVCGTAISESKNVGDTIILESKDVGDTTLFESKDVGDVNTHELKDVCETAILESTDVCETAIF*