AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1183910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1183910 MtrunA17_Chr8g0335341 94.925 729 25 3 1 723 1 723 0.0 1374
Msa1183910 MtrunA17_Chr7g0250681 68.620 529 126 7 227 723 323 843 0.0 702
Msa1183910 MtrunA17_Chr5g0405741 39.341 455 241 9 277 719 204 635 7.39e-93 302
Msa1183910 MtrunA17_Chr5g0405741 55.932 59 26 0 1 59 1 59 8.77e-12 68.6
Msa1183910 MtrunA17_Chr2g0303521 31.195 452 276 8 277 719 208 633 6.28e-52 191
Msa1183910 MtrunA17_Chr3g0139411 28.889 450 281 11 279 715 277 700 1.48e-51 191
Msa1183910 MtrunA17_Chr2g0331821 28.733 442 298 9 269 705 309 738 1.80e-48 182
Msa1183910 MtrunA17_Chr2g0331821 57.627 59 25 0 1 59 1 59 1.80e-14 77.4
Msa1183910 MtrunA17_Chr3g0124841 26.306 536 355 9 213 715 371 899 2.47e-44 171
Msa1183910 MtrunA17_Chr4g0004471 31.448 442 273 11 270 705 119 536 1.32e-43 166
Msa1183910 MtrunA17_Chr1g0211271 28.027 446 294 9 277 705 274 709 2.93e-41 161
Msa1183910 MtrunA17_Chr1g0154051 78.095 105 18 2 34 138 32 131 5.31e-39 140
Msa1183910 MtrunA17_Chr5g0448571 24.208 442 280 11 281 711 358 755 1.34e-26 115
Msa1183910 MtrunA17_Chr4g0072011 26.765 340 228 7 272 597 330 662 4.48e-26 114
Msa1183910 MtrunA17_Chr3g0143731 25.828 453 256 12 277 706 275 670 6.41e-26 113
Msa1183910 MtrunA17_Chr8g0341331 74.000 100 18 3 35 131 31 125 2.78e-25 102
Msa1183910 MtrunA17_Chr5g0440551 33.621 232 137 5 361 583 429 652 3.41e-25 111
Msa1183910 MtrunA17_Chr3g0130761 27.536 345 236 6 362 705 433 764 8.32e-25 110
Msa1183910 MtrunA17_Chr2g0298171 38.547 179 98 4 364 532 628 804 1.84e-23 106
Msa1183910 MtrunA17_Chr3g0118401 32.751 229 147 3 361 585 445 670 2.25e-23 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1183910 AT1G02110.1 57.276 749 246 17 1 722 1 702 0.0 794
Msa1183910 AT3G60320.1 55.886 807 261 16 1 723 1 796 0.0 769
Msa1183910 AT3G51290.3 40.889 450 241 9 277 722 200 628 1.66e-95 310
Msa1183910 AT3G51290.2 41.111 450 240 9 277 722 200 628 1.68e-93 308
Msa1183910 AT3G51290.1 40.444 450 237 10 277 722 200 622 8.98e-90 294
Msa1183910 AT2G34670.2 34.605 367 223 6 350 715 324 674 7.24e-61 217
Msa1183910 AT1G52320.3 29.314 423 278 9 288 705 34 440 1.30e-50 184
Msa1183910 AT1G52320.4 29.314 423 278 9 288 705 34 440 1.30e-50 184
Msa1183910 AT1G52320.1 29.314 423 278 9 288 705 337 743 1.03e-49 187
Msa1183910 AT1G52320.2 29.314 423 278 9 288 705 360 766 1.74e-49 186
Msa1183910 AT1G52320.5 29.314 423 278 9 288 705 360 766 1.74e-49 186
Msa1183910 AT1G21740.1 28.667 450 305 8 277 715 497 941 4.32e-45 174
Msa1183910 AT1G77500.1 27.655 452 284 9 277 715 449 870 1.52e-39 157
Msa1183910 AT2G34670.1 33.628 226 142 4 350 575 324 541 2.25e-32 133
Msa1183910 AT4G35240.4 24.777 448 297 7 277 719 419 831 4.46e-29 124
Msa1183910 AT4G35240.3 24.777 448 297 7 277 719 419 831 4.46e-29 124
Msa1183910 AT4G35240.2 24.777 448 297 7 277 719 419 831 6.65e-29 124
Msa1183910 AT4G35240.1 24.777 448 297 7 277 719 419 831 6.65e-29 124
Msa1183910 AT2G17110.1 28.691 359 234 9 246 589 279 630 1.72e-28 122
Msa1183910 AT2G27090.2 33.621 232 144 6 361 587 425 651 8.56e-25 110
Msa1183910 AT2G27090.1 33.621 232 144 6 361 587 425 651 8.56e-25 110
Msa1183910 AT5G54480.1 26.178 382 233 10 258 621 294 644 1.98e-23 106
Msa1183910 AT1G20530.1 26.546 388 246 10 278 649 232 596 2.59e-23 105
Msa1183910 AT4G30130.3 31.429 245 153 5 364 597 401 641 6.80e-22 101
Msa1183910 AT4G30130.1 31.429 245 153 5 364 597 401 641 6.80e-22 101
Msa1183910 AT4G39790.1 31.250 224 147 5 364 583 375 595 1.34e-21 100
Msa1183910 AT2G19090.1 30.364 247 155 5 364 597 482 724 2.06e-21 100
Msa1183910 AT4G30130.4 43.210 81 45 1 364 444 401 480 1.02e-11 68.6
Msa1183910 AT4G30130.2 43.210 81 45 1 364 444 401 480 1.02e-11 68.6
Msa1183910 AT5G25590.1 54.237 59 27 0 1 59 1 59 1.12e-11 68.9

Find 188 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATAAATTACCTACTTTA+TGG 0.098163 8_1:+19414830 None:intergenic
TCTGTTCTGCTTTGGCTTTC+GGG 0.140777 8_1:-19414804 Msa1183910:three_prime_UTR
ATCTGTTCTGCTTTGGCTTT+CGG 0.171279 8_1:-19414805 Msa1183910:three_prime_UTR
TGCCGGAAATATTCGGAATT+TGG 0.192821 8_1:+19418597 None:intergenic
CTCCACTTTGGACCGGCTTT+TGG 0.216350 8_1:-19417783 Msa1183910:CDS
CAGCTGCCATCAATGGTCTT+AGG 0.218432 8_1:-19416834 Msa1183910:CDS
TCCCCTCTTATAGGAAATTA+AGG 0.220886 8_1:-19414677 Msa1183910:three_prime_UTR
CTCCAAATTCCGAATATTTC+CGG 0.231370 8_1:-19418599 Msa1183910:CDS
GCCGTGCAACCCATTGTTTC+AGG 0.246888 8_1:+19419083 None:intergenic
TCTGATGATGTATCGGATTC+TGG 0.247422 8_1:+19418540 None:intergenic
CCGTATATTATACTCGTATT+TGG 0.252928 8_1:+19419117 None:intergenic
CCAATATCTTCCACAGAGTT+TGG 0.255194 8_1:+19415080 None:intergenic
GTCAAGAACTCAAGATTAAA+AGG 0.266491 8_1:-19415208 Msa1183910:CDS
CCAAACTCTGTGGAAGATAT+TGG 0.303854 8_1:-19415080 Msa1183910:CDS
ATGGGAAAACAAACTCTTTC+AGG 0.306558 8_1:-19417759 Msa1183910:CDS
AAACTTCTTCCGTTTGGAAC+TGG 0.310325 8_1:-19418647 Msa1183910:CDS
AGGTTTGCCTGGAATGTTTC+AGG 0.312214 8_1:-19414916 Msa1183910:CDS
CAATGTTGCTTTGCATTTCA+TGG 0.320663 8_1:+19415588 None:intergenic
CGGAGATGTTGCAGATTAGT+AGG 0.332632 8_1:-19418173 Msa1183910:CDS
AGAACGTTGCCGGAAATATT+CGG 0.340163 8_1:+19418590 None:intergenic
TCTCCTTAATTTCCTATAAG+AGG 0.341283 8_1:+19414674 None:intergenic
TCATATTCTATGGTTGGTAT+TGG 0.351215 8_1:-19415110 Msa1183910:CDS
AAAGTGGAGCAGAGGCTCTT+TGG 0.352489 8_1:+19417797 None:intergenic
TGTTGCCGGCGGTGAGGTTC+CGG 0.353203 8_1:-19418316 Msa1183910:CDS
ATAATTAATCTGTTCTGCTT+TGG 0.354765 8_1:-19414812 Msa1183910:three_prime_UTR
CAGCAGCATTAGCAACAAAA+TGG 0.360224 8_1:-19415357 Msa1183910:CDS
TCACCGCCGGCAACAAATTC+CGG 0.362313 8_1:+19418324 None:intergenic
GCTTCCGAAGCGACAGTGTC+TGG 0.370101 8_1:+19415278 None:intergenic
CTTCTGAAACTTCTTCCGTT+TGG 0.372515 8_1:-19418653 Msa1183910:CDS
AACACGTCGCCGGAAAATTC+CGG 0.375532 8_1:-19418778 Msa1183910:CDS
TGCTTTGCATTTCATGGTAC+TGG 0.376222 8_1:+19415594 None:intergenic
AAATAGAATCACAAAATTCT+TGG 0.384792 8_1:+19414700 None:intergenic
TTTGTGGTTGTTACGGTGGC+TGG 0.385764 8_1:+19418819 None:intergenic
TTATAGGAAATTAAGGAGAT+TGG 0.393221 8_1:-19414670 Msa1183910:three_prime_UTR
AACTGCCAATGGTGGCTTTG+AGG 0.395022 8_1:+19417862 None:intergenic
TTTGATGCCGGTTCACTTGA+AGG 0.399037 8_1:-19417830 Msa1183910:CDS
TTAATCTGAAGGACTAGGTT+AGG 0.406705 8_1:+19419235 None:intergenic
TAGTGACTGTAACCTTGTTA+TGG 0.407255 8_1:+19416891 None:intergenic
TTGAGTGACCTTTCGATGAT+TGG 0.408622 8_1:+19415540 None:intergenic
AGGAGGTTCGGTGTAGTGAT+TGG 0.415100 8_1:-19418407 Msa1183910:CDS
GTCAATGCCTGAAACATTCC+AGG 0.419912 8_1:+19414909 None:intergenic
TCGGCGGTTGAGAACGTTGC+CGG 0.420345 8_1:+19418580 None:intergenic
AGCTGCCATCAATGGTCTTA+GGG 0.421008 8_1:-19416833 Msa1183910:CDS
CAGCTTGTTGAGCTTTGTCA+TGG 0.421587 8_1:-19416793 Msa1183910:CDS
AGTTGCCTGTTTGTGTGATT+CGG 0.424981 8_1:+19415514 None:intergenic
GCCCGGTCCTTCAAGTGAAC+CGG 0.428595 8_1:+19417823 None:intergenic
AACTTCTTCCGTTTGGAACT+GGG 0.429013 8_1:-19418646 Msa1183910:CDS
AGAGTCCCTAAGACCATTGA+TGG 0.436049 8_1:+19416828 None:intergenic
TAACCTTGTTATGGTAGCCT+TGG 0.439375 8_1:+19416900 None:intergenic
AACATCCGAATCACACAAAC+AGG 0.442893 8_1:-19415519 Msa1183910:CDS
AACATTGTACAGCAAGTTTG+TGG 0.443164 8_1:-19415572 Msa1183910:CDS
AAATCACCGGAATTTGTTGC+CGG 0.450095 8_1:-19418330 Msa1183910:CDS
AATCTACAGACAGGTTTGCC+TGG 0.453101 8_1:-19414927 Msa1183910:CDS
GAAGGTGGAGAGTGCGGAAC+CGG 0.456738 8_1:+19418932 None:intergenic
ACAACAAAATAGTTAGAACT+TGG 0.457524 8_1:+19414728 None:intergenic
CCAAATACGAGTATAATATA+CGG 0.458286 8_1:-19419117 Msa1183910:five_prime_UTR
CACCATTGGCAGTTAAATAC+CGG 0.462465 8_1:-19417853 Msa1183910:CDS
CTCCTTAATTTCCTATAAGA+GGG 0.463804 8_1:+19414675 None:intergenic
TTGTTGTTGTCATTGTTGAC+TGG 0.464323 8_1:+19415380 None:intergenic
CGAGGAGGTGAATGAAGAAA+AGG 0.465133 8_1:-19418283 Msa1183910:CDS
TATTCGGAATTTGGAGGAGA+AGG 0.467016 8_1:+19418606 None:intergenic
GGAGGTTCGGTGTAGTGATT+GGG 0.467726 8_1:-19418406 Msa1183910:CDS
TGCCGGTTCACTTGAAGGAC+CGG 0.468386 8_1:-19417825 Msa1183910:CDS
ACTAATTATTGTAACATCTC+AGG 0.470791 8_1:-19416872 Msa1183910:CDS
GTTAAATACCGGTTTGATGC+CGG 0.472409 8_1:-19417842 Msa1183910:CDS
CAGTTCGGAAACTCGCTTCT+CGG 0.476259 8_1:+19418711 None:intergenic
TCGGAATTTGGAGGAGAAGG+AGG 0.477917 8_1:+19418609 None:intergenic
ATATATACCACCTGAAACAA+TGG 0.481180 8_1:-19419093 Msa1183910:exon
ACACGGACAAGTGGAGGAGC+CGG 0.482188 8_1:-19414600 Msa1183910:three_prime_UTR
GAAAACTGACACTGCTTACA+AGG 0.482447 8_1:-19415186 Msa1183910:CDS
TACAACTCATATTCTATGGT+TGG 0.486108 8_1:-19415116 Msa1183910:CDS
AAAGGTGAAGATGAAGCATA+AGG 0.487575 8_1:-19418265 Msa1183910:CDS
AAACGGAACGTGAGGAGGTT+CGG 0.488757 8_1:-19418419 Msa1183910:CDS
AAAGAGCCTCTGCTCCACTT+TGG 0.490480 8_1:-19417795 Msa1183910:CDS
CGTTGAACAAACGCTTGAAT+CGG 0.491262 8_1:+19418734 None:intergenic
TTTGAGAAAGCGGCGGTGGC+CGG 0.491434 8_1:-19418207 Msa1183910:CDS
ACGGTGGCTGGACGAGGAGG+TGG 0.495073 8_1:+19418831 None:intergenic
GAATTTGGAGGAGAAGGAGG+AGG 0.496035 8_1:+19418612 None:intergenic
TGTTCCAGACACTGTCGCTT+CGG 0.496334 8_1:-19415282 Msa1183910:CDS
ACCTCCTCGTCTTTCCTCAC+CGG 0.497977 8_1:+19418297 None:intergenic
ACTACCTCAGCTGCCATCAA+TGG 0.500376 8_1:-19416841 Msa1183910:CDS
ACCTGAAACAATGGGTTGCA+CGG 0.501443 8_1:-19419084 Msa1183910:exon
CTGTTCTGCTTTGGCTTTCG+GGG 0.503690 8_1:-19414803 Msa1183910:three_prime_UTR
GAAGCATTCGAAGGCTATTG+AGG 0.506274 8_1:-19414973 Msa1183910:CDS
GCACTCTCCACCTTCGCCGC+CGG 0.510838 8_1:-19418924 Msa1183910:CDS
GTGTGAAGATTGAGCATGAA+AGG 0.511307 8_1:-19416987 Msa1183910:CDS
AGGTTCACCGGCGGCGAAGG+TGG 0.514217 8_1:+19418917 None:intergenic
AGAATGTGTGGAAGCTTCAC+CGG 0.514510 8_1:+19418759 None:intergenic
TAGTTTCCATCCATCACAAA+AGG 0.515874 8_1:+19415316 None:intergenic
CGGAAATATTCGGAATTTGG+AGG 0.517284 8_1:+19418600 None:intergenic
GGTGGCCGGAGATCGGTTAT+CGG 0.518645 8_1:-19418193 Msa1183910:CDS
GTTGTTACGGTGGCTGGACG+AGG 0.518756 8_1:+19418825 None:intergenic
GAGAGGTTCACCGGCGGCGA+AGG 0.519230 8_1:+19418914 None:intergenic
GTGGCTGGACGAGGAGGTGG+CGG 0.521485 8_1:+19418834 None:intergenic
GGGGTGTGAGTTCAGTATAA+AGG 0.522448 8_1:-19414782 Msa1183910:three_prime_UTR
TATATACCACCTGAAACAAT+GGG 0.523775 8_1:-19419092 Msa1183910:exon
GGAACAAGAACTAGATCGAT+TGG 0.523973 8_1:-19418442 Msa1183910:CDS
AGCTTGTTGAGCTTTGTCAT+GGG 0.524450 8_1:-19416792 Msa1183910:intron
CGAGAAGCGAGTTTCCGAAC+TGG 0.524694 8_1:-19418710 Msa1183910:CDS
TAGAATCAGCTCTGTCAGCT+TGG 0.525936 8_1:-19415484 Msa1183910:CDS
CTTTCGATGATTGGTTCACA+AGG 0.529959 8_1:+19415549 None:intergenic
CAAGTGAACCGGCATCAAAC+CGG 0.530021 8_1:+19417834 None:intergenic
TGAGCAAAGTGAGCTCAACT+TGG 0.530284 8_1:-19417886 Msa1183910:CDS
AAGCGGCGGTGGCCGGAGAT+CGG 0.531676 8_1:-19418200 Msa1183910:CDS
CAGAGGCTCTTTGGACCGCC+CGG 0.533714 8_1:+19417806 None:intergenic
GGAAGATATTGGACAAGGCT+TGG 0.535265 8_1:-19415069 Msa1183910:CDS
AGAACTAGATCGATTGGAAA+CGG 0.539459 8_1:-19418436 Msa1183910:CDS
CACGGACAAGTGGAGGAGCC+GGG 0.540071 8_1:-19414599 Msa1183910:three_prime_UTR
TCAGAATCACAAGACTGAAA+CGG 0.540629 8_1:-19418463 Msa1183910:CDS
TCAACCGCCGAATCATAAAC+CGG 0.541451 8_1:-19418568 Msa1183910:CDS
AAGTGTTAATCTGAAGGACT+AGG 0.544611 8_1:+19419230 None:intergenic
ACACTTAATAATCTACAGAC+AGG 0.546583 8_1:-19414936 Msa1183910:CDS
GCCTCTGCTCCACTTTGGAC+CGG 0.546977 8_1:-19417790 Msa1183910:CDS
TTGCTTAATTAGGCTAGAGA+AGG 0.551085 8_1:-19417009 Msa1183910:intron
TGTTCTGCTTTGGCTTTCGG+GGG 0.552979 8_1:-19414802 Msa1183910:three_prime_UTR
ATTGGAAACGGAACGTGAGG+AGG 0.556480 8_1:-19418424 Msa1183910:CDS
GAACGATTCTGATGATGTAT+CGG 0.557299 8_1:+19418533 None:intergenic
TTAGTAGGGCTCAACTTGAT+CGG 0.558121 8_1:-19418158 Msa1183910:CDS
GGAGATGTTGCAGATTAGTA+GGG 0.562230 8_1:-19418172 Msa1183910:CDS
AACTGCAAGTGTTAATCTGA+AGG 0.564018 8_1:+19419224 None:intergenic
GCGGTTGGAATGAACCAGTT+CGG 0.568073 8_1:+19418696 None:intergenic
GGAATTTGTTGCCGGCGGTG+AGG 0.568540 8_1:-19418322 Msa1183910:CDS
AAAATTCTCCCAGTTCCAAA+CGG 0.570472 8_1:+19418638 None:intergenic
CAAAAGGAAAATGCATCAGA+TGG 0.571615 8_1:+19415332 None:intergenic
TAAACTCGACAACGAAGAAA+CGG 0.572183 8_1:-19419057 Msa1183910:CDS
AACCGGTATTTAACTGCCAA+TGG 0.572575 8_1:+19417851 None:intergenic
CCGTTCATATGCCATAAAGT+AGG 0.573938 8_1:-19414841 Msa1183910:exon
TTGGACCTCAAAGCCACCAT+TGG 0.576071 8_1:-19417867 Msa1183910:CDS
GGAGACAGCGAGAGGTTCAC+CGG 0.577083 8_1:+19418905 None:intergenic
CAGTGTCTGGAACACGGTCA+AGG 0.579288 8_1:+19415291 None:intergenic
TGCCAAAAGCCGGTCCAAAG+TGG 0.581464 8_1:+19417781 None:intergenic
CAAACTCTTTCAGGAAGTGA+AGG 0.582816 8_1:-19417750 Msa1183910:intron
TCTGCAGAGTGAAGAATGCA+AGG 0.582873 8_1:-19416953 Msa1183910:CDS
TGTAACTCTCTTCGCCTCAC+CGG 0.588335 8_1:-19418951 Msa1183910:CDS
GCCGGTTCACTTGAAGGACC+GGG 0.588752 8_1:-19417824 Msa1183910:CDS
AGAGCGCCGCCGTCTCATGA+AGG 0.589240 8_1:-19419021 Msa1183910:CDS
GCCGGTCCAAAGTGGAGCAG+AGG 0.591183 8_1:+19417789 None:intergenic
TTAGAACTTGGAACAACAAG+AGG 0.591403 8_1:+19414740 None:intergenic
CATCTCCGATAACCGATCTC+CGG 0.591527 8_1:+19418188 None:intergenic
GGTTCGGTGTAGTGATTGGG+AGG 0.592402 8_1:-19418403 Msa1183910:CDS
TGAAAACTGACACGGACAAG+TGG 0.593532 8_1:-19414609 Msa1183910:three_prime_UTR
CAGTTTCTGAAACACGTCGC+CGG 0.594202 8_1:-19418788 Msa1183910:CDS
AGTGTCTGGAACACGGTCAA+GGG 0.596369 8_1:+19415292 None:intergenic
GTGCAACCCATTGTTTCAGG+TGG 0.604726 8_1:+19419086 None:intergenic
AAGACCATTGATGGCAGCTG+AGG 0.609697 8_1:+19416837 None:intergenic
GGCGGCGAAGGTGGAGAGTG+CGG 0.611743 8_1:+19418926 None:intergenic
GTTACGGTGGCTGGACGAGG+AGG 0.611751 8_1:+19418828 None:intergenic
CGGTATTTAACTGCCAATGG+TGG 0.612149 8_1:+19417854 None:intergenic
TCCTTAATTTCCTATAAGAG+GGG 0.612933 8_1:+19414676 None:intergenic
GACGTGTTTCAGAAACTGTA+CGG 0.616647 8_1:+19418793 None:intergenic
ACTGTGTTGATGAAAACGGC+GGG 0.618606 8_1:+19418873 None:intergenic
GAAAACGGCGGGAATGTCGT+CGG 0.622356 8_1:+19418884 None:intergenic
TGGAATAATTCCAAACTCTG+TGG 0.623866 8_1:-19415090 Msa1183910:CDS
AACATAGAATCATTCACATG+TGG 0.629855 8_1:-19415628 Msa1183910:intron
GTAGATAAATGAAATCGCAA+TGG 0.632786 8_1:-19414636 Msa1183910:three_prime_UTR
TGAAAAGTTGAAGCATTCGA+AGG 0.634173 8_1:-19414982 Msa1183910:CDS
CTTGAATCGGAGAGAATGTG+TGG 0.636876 8_1:+19418747 None:intergenic
TCGATTGGAAACGGAACGTG+AGG 0.636903 8_1:-19418427 Msa1183910:CDS
CAGAGTGAAGAATGCAAGGG+AGG 0.640119 8_1:-19416949 Msa1183910:CDS
CCTACTTTATGGCATATGAA+CGG 0.642947 8_1:+19414841 None:intergenic
AAACTGACACGGACAAGTGG+AGG 0.645665 8_1:-19414606 Msa1183910:three_prime_UTR
TGACAAAGCTCAACAAGCTG+AGG 0.646039 8_1:+19416796 None:intergenic
TGGAGAGTGCGGAACCGGTG+AGG 0.647266 8_1:+19418937 None:intergenic
AAACCAAGGCTACCATAACA+AGG 0.647826 8_1:-19416903 Msa1183910:CDS
TCACCGGAATTTGTTGCCGG+CGG 0.648273 8_1:-19418327 Msa1183910:CDS
CTTGTGAACCAATCATCGAA+AGG 0.650319 8_1:-19415548 Msa1183910:CDS
AAGCGACAGTGTCTGGAACA+CGG 0.656033 8_1:+19415285 None:intergenic
CGCTCGCCACTACCTCGCGG+CGG 0.656448 8_1:-19418988 Msa1183910:CDS
ATTGCTTAACTGATATTACG+TGG 0.657821 8_1:+19415231 None:intergenic
CCTCACCGGAACCTCACCGC+CGG 0.660549 8_1:+19418311 None:intergenic
ATGTCGTCGGAGACAGCGAG+AGG 0.661397 8_1:+19418897 None:intergenic
GTTCTGCTTTGGCTTTCGGG+GGG 0.663294 8_1:-19414801 Msa1183910:three_prime_UTR
TACTGTGTTGATGAAAACGG+CGG 0.666428 8_1:+19418872 None:intergenic
CTGCAGAGTGAAGAATGCAA+GGG 0.667767 8_1:-19416952 Msa1183910:CDS
AACAAAGATAGACAAAACCA+AGG 0.673276 8_1:-19416917 Msa1183910:CDS
ATGGTCATTGAAAACTGACA+CGG 0.676530 8_1:-19414617 Msa1183910:three_prime_UTR
TCCGGTGAGGAAAGACGAGG+AGG 0.676721 8_1:-19418298 Msa1183910:CDS
ACAACGAAGAAACGGTGCGG+CGG 0.676785 8_1:-19419049 Msa1183910:CDS
CCGGCGGTGAGGTTCCGGTG+AGG 0.679781 8_1:-19418311 Msa1183910:CDS
AATCAGAGTGCGCCGCCGCG+AGG 0.683669 8_1:+19418976 None:intergenic
TCTGTGGAAGATATTGGACA+AGG 0.692232 8_1:-19415074 Msa1183910:CDS
AAACTGCTTCCTTCATGAGA+CGG 0.693412 8_1:+19419012 None:intergenic
CTGCTTCCTTCATGAGACGG+CGG 0.713162 8_1:+19419015 None:intergenic
GACAGCGAGAGGTTCACCGG+CGG 0.729279 8_1:+19418908 None:intergenic
TTACGCTCGCCACTACCTCG+CGG 0.753107 8_1:-19418991 Msa1183910:CDS
TCGACAACGAAGAAACGGTG+CGG 0.756888 8_1:-19419052 Msa1183910:CDS
GGTTCCGGTGAGGAAAGACG+AGG 0.762077 8_1:-19418301 Msa1183910:CDS
GGTTCACTTGAAGGACCGGG+CGG 0.787079 8_1:-19417821 Msa1183910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATCATATATTTAAATTG+GGG - chr8_1:19417186-19417205 Msa1183910:intron 10.0%
!!! TAATTTTTTGAACAATGTAA+AGG - chr8_1:19416170-19416189 Msa1183910:intron 15.0%
!! TAATCATATATTTAAATTGG+GGG - chr8_1:19417187-19417206 Msa1183910:intron 15.0%
!!! CAAATACTATTTCAAAATTT+TGG + chr8_1:19417379-19417398 None:intergenic 15.0%
!! AAATAGTATTTGAGAAAATA+TGG - chr8_1:19417387-19417406 Msa1183910:intron 15.0%
!! ATGAAATTGGAAAATTATAA+TGG - chr8_1:19417929-19417948 Msa1183910:intron 15.0%
!! TATTGAAATTTGAATTGTAA+GGG + chr8_1:19418006-19418025 None:intergenic 15.0%
!! ATATTGAAATTTGAATTGTA+AGG + chr8_1:19418007-19418026 None:intergenic 15.0%
!!! TATAAACTTGATAATCATAA+AGG - chr8_1:19418024-19418043 Msa1183910:intron 15.0%
!! ATTATAAATTACCTACTTTA+TGG + chr8_1:19419022-19419041 None:intergenic 15.0%
!! AGATTTATATCTGAAGAAAT+TGG - chr8_1:19415840-19415859 Msa1183910:intron 20.0%
!!! TAGTTTAGGTTGAATTAAAA+AGG + chr8_1:19416725-19416744 None:intergenic 20.0%
!!! ATTTAGAGTTAATTTGTGAA+GGG + chr8_1:19416770-19416789 None:intergenic 20.0%
!!! TATTTAGAGTTAATTTGTGA+AGG + chr8_1:19416771-19416790 None:intergenic 20.0%
!! TCTAAATACTCATCTAAATT+AGG - chr8_1:19416783-19416802 Msa1183910:intron 20.0%
!!! TTTTGCTTAATTGCTTAATT+AGG - chr8_1:19416830-19416849 Msa1183910:CDS 20.0%
!!! ATACTATTTCAAAATTTTGG+TGG + chr8_1:19417376-19417395 None:intergenic 20.0%
!! TCTCAATACTAGTATATATA+TGG + chr8_1:19418062-19418081 None:intergenic 20.0%
!! AAATAGAATCACAAAATTCT+TGG + chr8_1:19419152-19419171 None:intergenic 20.0%
! CCAAATACGAGTATAATATA+CGG - chr8_1:19414732-19414751 Msa1183910:three_prime_UTR 25.0%
!!! TTTTACTGTGTTGATGAAAA+CGG + chr8_1:19414983-19415002 None:intergenic 25.0%
!! GGATTTAATGTTTTTCGTTA+TGG - chr8_1:19415861-19415880 Msa1183910:intron 25.0%
!! TACGATAAATTTTCATGTTG+AGG - chr8_1:19416305-19416324 Msa1183910:intron 25.0%
!! TTGATTTCATAATTTTGTCG+AGG - chr8_1:19416406-19416425 Msa1183910:intron 25.0%
!!! TGATTCAATTTCGAGTTATA+AGG - chr8_1:19416510-19416529 Msa1183910:intron 25.0%
!!! TAAAAAGGAAGTGACTTTTT+TGG + chr8_1:19416710-19416729 None:intergenic 25.0%
!!! TTGCAAGTTGATATTAGTTT+AGG + chr8_1:19416739-19416758 None:intergenic 25.0%
! ACTAATTATTGTAACATCTC+AGG - chr8_1:19416977-19416996 Msa1183910:CDS 25.0%
! ATTTGAGAGTTAATTCTCAA+TGG - chr8_1:19417482-19417501 Msa1183910:intron 25.0%
! AACTTGATTCTACTGTATTA+TGG + chr8_1:19417529-19417548 None:intergenic 25.0%
! AGTGAACAAAAAATAACTTC+AGG + chr8_1:19417637-19417656 None:intergenic 25.0%
!!! GAAGTTATTTTTTGTTCACT+AGG - chr8_1:19417637-19417656 Msa1183910:intron 25.0%
!!! ATAAAATGGTTTGCTCAAAT+GGG + chr8_1:19417771-19417790 None:intergenic 25.0%
!!! AATAAAATGGTTTGCTCAAA+TGG + chr8_1:19417772-19417791 None:intergenic 25.0%
! GTAACTGTCAACAAATAAAA+TGG + chr8_1:19417785-19417804 None:intergenic 25.0%
!!! CTCTTTGAAATTTTATGATC+CGG + chr8_1:19418405-19418424 None:intergenic 25.0%
!! GTTTTACAACTCATATTCTA+TGG - chr8_1:19418729-19418748 Msa1183910:CDS 25.0%
! ATAATTAATCTGTTCTGCTT+TGG - chr8_1:19419037-19419056 Msa1183910:CDS 25.0%
! ACAACAAAATAGTTAGAACT+TGG + chr8_1:19419124-19419143 None:intergenic 25.0%
! TTATAGGAAATTAAGGAGAT+TGG - chr8_1:19419179-19419198 Msa1183910:five_prime_UTR 25.0%
CCGTATATTATACTCGTATT+TGG + chr8_1:19414735-19414754 None:intergenic 30.0%
ATATATACCACCTGAAACAA+TGG - chr8_1:19414756-19414775 Msa1183910:three_prime_UTR 30.0%
TATATACCACCTGAAACAAT+GGG - chr8_1:19414757-19414776 Msa1183910:three_prime_UTR 30.0%
!! TATGAAGATGAATTTTCGAG+TGG + chr8_1:19415353-19415372 None:intergenic 30.0%
! AACAAATTCCGGTGATTTTT+CGG + chr8_1:19415517-19415536 None:intergenic 30.0%
!! AAGAGAGAATTTTGAGAAAG+CGG - chr8_1:19415632-19415651 Msa1183910:intron 30.0%
AACAATGTAAAGGTCTTCTA+GGG - chr8_1:19416180-19416199 Msa1183910:intron 30.0%
GGTAGTGTAGTAATAATTGA+TGG - chr8_1:19416202-19416221 Msa1183910:intron 30.0%
AACAAAGATAGACAAAACCA+AGG - chr8_1:19416932-19416951 Msa1183910:CDS 30.0%
ATGTCTCTCTATTCTACTAT+TGG - chr8_1:19417081-19417100 Msa1183910:intron 30.0%
CTTATATCTAAGTTCAGAGA+GGG + chr8_1:19417108-19417127 None:intergenic 30.0%
ACTTATATCTAAGTTCAGAG+AGG + chr8_1:19417109-19417128 None:intergenic 30.0%
TATCTTATTCACATATGAGC+TGG - chr8_1:19417142-19417161 Msa1183910:intron 30.0%
GTATTTGCACAATGTATGAA+AGG - chr8_1:19417212-19417231 Msa1183910:intron 30.0%
GTGTGTTTGATATTCAATCA+AGG - chr8_1:19417299-19417318 Msa1183910:intron 30.0%
! ATTGCTATTCGTACTTTCAT+TGG - chr8_1:19417349-19417368 Msa1183910:intron 30.0%
! TTGCTATTCGTACTTTCATT+GGG - chr8_1:19417350-19417369 Msa1183910:intron 30.0%
TCTACTGTATTATGGCAATA+CGG + chr8_1:19417521-19417540 None:intergenic 30.0%
! AATACAGTAGAATCAAGTTG+TGG - chr8_1:19417530-19417549 Msa1183910:intron 30.0%
!!! TATTTTTTGTTCACTAGGTG+TGG - chr8_1:19417642-19417661 Msa1183910:intron 30.0%
!! TAAAATGGTTTGCTCAAATG+GGG + chr8_1:19417770-19417789 None:intergenic 30.0%
CAATTTCATATACTATTGCC+AGG + chr8_1:19417918-19417937 None:intergenic 30.0%
CTGGCAATAGTATATGAAAT+TGG - chr8_1:19417916-19417935 Msa1183910:CDS 30.0%
GAACATAGTAGCATATTTCT+TGG - chr8_1:19417951-19417970 Msa1183910:intron 30.0%
! ATTTCTTGGTAAAGCATCTT+TGG - chr8_1:19417965-19417984 Msa1183910:intron 30.0%
TTGATGCACAACAATAATGT+AGG + chr8_1:19418133-19418152 None:intergenic 30.0%
CATGTGAATGATTCTATGTT+TGG + chr8_1:19418221-19418240 None:intergenic 30.0%
AACATAGAATCATTCACATG+TGG - chr8_1:19418221-19418240 Msa1183910:CDS 30.0%
!!! GACTTTATTTTGTCACTACA+TGG - chr8_1:19418424-19418443 Msa1183910:CDS 30.0%
!! TTATTTTGTCACTACATGGT+TGG - chr8_1:19418428-19418447 Msa1183910:CDS 30.0%
ATTGCTTAACTGATATTACG+TGG + chr8_1:19418621-19418640 None:intergenic 30.0%
GTCAAGAACTCAAGATTAAA+AGG - chr8_1:19418641-19418660 Msa1183910:CDS 30.0%
TACAACTCATATTCTATGGT+TGG - chr8_1:19418733-19418752 Msa1183910:CDS 30.0%
! TCATATTCTATGGTTGGTAT+TGG - chr8_1:19418739-19418758 Msa1183910:CDS 30.0%
ACACTTAATAATCTACAGAC+AGG - chr8_1:19418913-19418932 Msa1183910:CDS 30.0%
! ATTCTATTTTCCCCTCTTAT+AGG - chr8_1:19419163-19419182 Msa1183910:five_prime_UTR 30.0%
TCCTTAATTTCCTATAAGAG+GGG + chr8_1:19419176-19419195 None:intergenic 30.0%
CTCCTTAATTTCCTATAAGA+GGG + chr8_1:19419177-19419196 None:intergenic 30.0%
TCTCCTTAATTTCCTATAAG+AGG + chr8_1:19419178-19419197 None:intergenic 30.0%
GTAGATAAATGAAATCGCAA+TGG - chr8_1:19419213-19419232 Msa1183910:five_prime_UTR 30.0%
TTAATCTGAAGGACTAGGTT+AGG + chr8_1:19414617-19414636 None:intergenic 35.0%
AAGTGTTAATCTGAAGGACT+AGG + chr8_1:19414622-19414641 None:intergenic 35.0%
AACTGCAAGTGTTAATCTGA+AGG + chr8_1:19414628-19414647 None:intergenic 35.0%
TAAACTCGACAACGAAGAAA+CGG - chr8_1:19414792-19414811 Msa1183910:three_prime_UTR 35.0%
!!! TGTTGATTCATTTTGATGCG+CGG + chr8_1:19415175-19415194 None:intergenic 35.0%
AAAATTCTCCCAGTTCCAAA+CGG + chr8_1:19415214-19415233 None:intergenic 35.0%
CTCCAAATTCCGAATATTTC+CGG - chr8_1:19415250-19415269 Msa1183910:CDS 35.0%
! GGATTTTCCGGTTTATGATT+CGG + chr8_1:19415291-19415310 None:intergenic 35.0%
! GAACGATTCTGATGATGTAT+CGG + chr8_1:19415319-19415338 None:intergenic 35.0%
TCAGAATCACAAGACTGAAA+CGG - chr8_1:19415386-19415405 Msa1183910:CDS 35.0%
AGAACTAGATCGATTGGAAA+CGG - chr8_1:19415413-19415432 Msa1183910:CDS 35.0%
AAAGGTGAAGATGAAGCATA+AGG - chr8_1:19415584-19415603 Msa1183910:CDS 35.0%
ATGGGAAAACAAACTCTTTC+AGG - chr8_1:19416090-19416109 Msa1183910:intron 35.0%
GAACAATGTAAAGGTCTTCT+AGG - chr8_1:19416179-19416198 Msa1183910:intron 35.0%
ACAATGTAAAGGTCTTCTAG+GGG - chr8_1:19416181-19416200 Msa1183910:intron 35.0%
! ATCACAGAATCAGTCACTTT+CGG - chr8_1:19416239-19416258 Msa1183910:intron 35.0%
AACACTAAAACACCTAAAGC+AGG + chr8_1:19416350-19416369 None:intergenic 35.0%
CAGTGAGTTAAGCAAAATCA+CGG + chr8_1:19416469-19416488 None:intergenic 35.0%
TTATAAGGAATGAGTCGAGT+AGG - chr8_1:19416525-19416544 Msa1183910:intron 35.0%
TATAAGGAATGAGTCGAGTA+GGG - chr8_1:19416526-19416545 Msa1183910:intron 35.0%
TTGCTTAATTAGGCTAGAGA+AGG - chr8_1:19416840-19416859 Msa1183910:CDS 35.0%
TAGTGACTGTAACCTTGTTA+TGG + chr8_1:19416961-19416980 None:intergenic 35.0%
ATGAGATAGTCAACAAAGTC+AGG - chr8_1:19417265-19417284 Msa1183910:intron 35.0%
CTACTGTATTATGGCAATAC+GGG + chr8_1:19417520-19417539 None:intergenic 35.0%
TTACTCTTGCACACATAGTT+AGG + chr8_1:19417583-19417602 None:intergenic 35.0%
AGGGAAACAACTATACAGAA+TGG + chr8_1:19417886-19417905 None:intergenic 35.0%
! CTGTATAGTTGTTTCCCTTA+AGG - chr8_1:19417888-19417907 Msa1183910:CDS 35.0%
!! CAATGTTGCTTTGCATTTCA+TGG + chr8_1:19418264-19418283 None:intergenic 35.0%
AACATTGTACAGCAAGTTTG+TGG - chr8_1:19418277-19418296 Msa1183910:CDS 35.0%
!! CTTGGCATTCAAGTTTTATC+CGG - chr8_1:19418383-19418402 Msa1183910:CDS 35.0%
! TTGTTGTTGTCATTGTTGAC+TGG + chr8_1:19418472-19418491 None:intergenic 35.0%
CAAAAGGAAAATGCATCAGA+TGG + chr8_1:19418520-19418539 None:intergenic 35.0%
! GATGCATTTTCCTTTTGTGA+TGG - chr8_1:19418523-19418542 Msa1183910:CDS 35.0%
!! CATTTTCCTTTTGTGATGGA+TGG - chr8_1:19418527-19418546 Msa1183910:CDS 35.0%
TAGTTTCCATCCATCACAAA+AGG + chr8_1:19418536-19418555 None:intergenic 35.0%
TGGAATAATTCCAAACTCTG+TGG - chr8_1:19418759-19418778 Msa1183910:CDS 35.0%
!!! CCAATTTTTTCTCAGCAAGA+GGG + chr8_1:19418816-19418835 None:intergenic 35.0%
!!! TCCAATTTTTTCTCAGCAAG+AGG + chr8_1:19418817-19418836 None:intergenic 35.0%
! TGAAAAGTTGAAGCATTCGA+AGG - chr8_1:19418867-19418886 Msa1183910:CDS 35.0%
CCTACTTTATGGCATATGAA+CGG + chr8_1:19419011-19419030 None:intergenic 35.0%
!!! GTATAAAGGCCGATTTTTTC+AGG - chr8_1:19419081-19419100 Msa1183910:exon 35.0%
TTAGAACTTGGAACAACAAG+AGG + chr8_1:19419112-19419131 None:intergenic 35.0%
TCCCCTCTTATAGGAAATTA+AGG - chr8_1:19419172-19419191 Msa1183910:five_prime_UTR 35.0%
ATGGTCATTGAAAACTGACA+CGG - chr8_1:19419232-19419251 Msa1183910:five_prime_UTR 35.0%
AAACTGCTTCCTTCATGAGA+CGG + chr8_1:19414840-19414859 None:intergenic 40.0%
! TACTGTGTTGATGAAAACGG+CGG + chr8_1:19414980-19414999 None:intergenic 40.0%
!! ACGGAGTTTTGTGGTTGTTA+CGG + chr8_1:19415040-19415059 None:intergenic 40.0%
! AGAAACTGTACGGAGTTTTG+TGG + chr8_1:19415049-19415068 None:intergenic 40.0%
GACGTGTTTCAGAAACTGTA+CGG + chr8_1:19415059-19415078 None:intergenic 40.0%
CGTTGAACAAACGCTTGAAT+CGG + chr8_1:19415118-19415137 None:intergenic 40.0%
!! CTTCTGAAACTTCTTCCGTT+TGG - chr8_1:19415196-19415215 Msa1183910:CDS 40.0%
! AAACTTCTTCCGTTTGGAAC+TGG - chr8_1:19415202-19415221 Msa1183910:CDS 40.0%
! AACTTCTTCCGTTTGGAACT+GGG - chr8_1:19415203-19415222 Msa1183910:CDS 40.0%
TATTCGGAATTTGGAGGAGA+AGG + chr8_1:19415246-19415265 None:intergenic 40.0%
CGGAAATATTCGGAATTTGG+AGG + chr8_1:19415252-19415271 None:intergenic 40.0%
TGCCGGAAATATTCGGAATT+TGG + chr8_1:19415255-19415274 None:intergenic 40.0%
AGAACGTTGCCGGAAATATT+CGG + chr8_1:19415262-19415281 None:intergenic 40.0%
!! TTTTCCGGTTTATGATTCGG+CGG + chr8_1:19415288-19415307 None:intergenic 40.0%
! GTATCGGATTCTGGATTTTC+CGG + chr8_1:19415303-19415322 None:intergenic 40.0%
! TCTGATGATGTATCGGATTC+TGG + chr8_1:19415312-19415331 None:intergenic 40.0%
GGAACAAGAACTAGATCGAT+TGG - chr8_1:19415407-19415426 Msa1183910:CDS 40.0%
AGTTATCGCCGAAAAATCAC+CGG - chr8_1:19415506-19415525 Msa1183910:CDS 40.0%
!! AAATCACCGGAATTTGTTGC+CGG - chr8_1:19415519-19415538 Msa1183910:CDS 40.0%
!! AGAGAATTTTGAGAAAGCGG+CGG - chr8_1:19415635-19415654 Msa1183910:intron 40.0%
GGAGATGTTGCAGATTAGTA+GGG - chr8_1:19415677-19415696 Msa1183910:intron 40.0%
TTAGTAGGGCTCAACTTGAT+CGG - chr8_1:19415691-19415710 Msa1183910:intron 40.0%
GTTTGCTTACTGAGAAAGTG+CGG - chr8_1:19415761-19415780 Msa1183910:intron 40.0%
! TTTGCTTACTGAGAAAGTGC+GGG - chr8_1:19415762-19415781 Msa1183910:intron 40.0%
CACCATTGGCAGTTAAATAC+CGG - chr8_1:19415996-19416015 Msa1183910:intron 40.0%
AACCGGTATTTAACTGCCAA+TGG + chr8_1:19416001-19416020 None:intergenic 40.0%
!! GTTAAATACCGGTTTGATGC+CGG - chr8_1:19416007-19416026 Msa1183910:intron 40.0%
CAAACTCTTTCAGGAAGTGA+AGG - chr8_1:19416099-19416118 Msa1183910:intron 40.0%
! CTGATGATGTTTCCTGCTTT+AGG - chr8_1:19416335-19416354 Msa1183910:intron 40.0%
CTTAACTCACTGCGAAACAA+GGG - chr8_1:19416477-19416496 Msa1183910:intron 40.0%
CATGCTAATCAAACGACGTT+TGG + chr8_1:19416595-19416614 None:intergenic 40.0%
CGTCGTTTGATTAGCATGTT+TGG - chr8_1:19416597-19416616 Msa1183910:intron 40.0%
GTGTGAAGATTGAGCATGAA+AGG - chr8_1:19416862-19416881 Msa1183910:CDS 40.0%
AAACCAAGGCTACCATAACA+AGG - chr8_1:19416946-19416965 Msa1183910:CDS 40.0%
! TAACCTTGTTATGGTAGCCT+TGG + chr8_1:19416952-19416971 None:intergenic 40.0%
!! AGCTTGTTGAGCTTTGTCAT+GGG - chr8_1:19417057-19417076 Msa1183910:intron 40.0%
GTCAACAAAGTCAGGAACTT+AGG - chr8_1:19417273-19417292 Msa1183910:intron 40.0%
! TATTGCCAGGTTGACCTTAA+GGG + chr8_1:19417905-19417924 None:intergenic 40.0%
TGCTTTGCATTTCATGGTAC+TGG + chr8_1:19418258-19418277 None:intergenic 40.0%
! CTTTCGATGATTGGTTCACA+AGG + chr8_1:19418303-19418322 None:intergenic 40.0%
CTTGTGAACCAATCATCGAA+AGG - chr8_1:19418301-19418320 Msa1183910:CDS 40.0%
TTGAGTGACCTTTCGATGAT+TGG + chr8_1:19418312-19418331 None:intergenic 40.0%
AACATCCGAATCACACAAAC+AGG - chr8_1:19418330-19418349 Msa1183910:CDS 40.0%
AGTTGCCTGTTTGTGTGATT+CGG + chr8_1:19418338-19418357 None:intergenic 40.0%
CAGCAGCATTAGCAACAAAA+TGG - chr8_1:19418492-19418511 Msa1183910:CDS 40.0%
GAAAACTGACACTGCTTACA+AGG - chr8_1:19418663-19418682 Msa1183910:CDS 40.0%
CCAATATCTTCCACAGAGTT+TGG + chr8_1:19418772-19418791 None:intergenic 40.0%
CCAAACTCTGTGGAAGATAT+TGG - chr8_1:19418769-19418788 Msa1183910:CDS 40.0%
TCTGTGGAAGATATTGGACA+AGG - chr8_1:19418775-19418794 Msa1183910:CDS 40.0%
CCCTCTTGCTGAGAAAAAAT+TGG - chr8_1:19418813-19418832 Msa1183910:CDS 40.0%
CCGTTCATATGCCATAAAGT+AGG - chr8_1:19419008-19419027 Msa1183910:CDS 40.0%
!! ATCTGTTCTGCTTTGGCTTT+CGG - chr8_1:19419044-19419063 Msa1183910:CDS 40.0%
!! AAGGAGATTGGCTCTTTTCT+TGG - chr8_1:19419191-19419210 Msa1183910:five_prime_UTR 40.0%
!! ACCTGAAACAATGGGTTGCA+CGG - chr8_1:19414765-19414784 Msa1183910:three_prime_UTR 45.0%
! ACTGTGTTGATGAAAACGGC+GGG + chr8_1:19414979-19414998 None:intergenic 45.0%
!! GAGTTTTGTGGTTGTTACGG+TGG + chr8_1:19415037-19415056 None:intergenic 45.0%
! GAAGCTTCACCGGAATTTTC+CGG + chr8_1:19415083-19415102 None:intergenic 45.0%
AGAATGTGTGGAAGCTTCAC+CGG + chr8_1:19415093-19415112 None:intergenic 45.0%
CTTGAATCGGAGAGAATGTG+TGG + chr8_1:19415105-19415124 None:intergenic 45.0%
!! GATTCATTTTGATGCGCGGT+TGG + chr8_1:19415171-19415190 None:intergenic 45.0%
TCAACCGCCGAATCATAAAC+CGG - chr8_1:19415281-19415300 Msa1183910:CDS 45.0%
CGAGGAGGTGAATGAAGAAA+AGG - chr8_1:19415566-19415585 Msa1183910:CDS 45.0%
CGGAGATGTTGCAGATTAGT+AGG - chr8_1:19415676-19415695 Msa1183910:intron 45.0%
TGAGCAAAGTGAGCTCAACT+TGG - chr8_1:19415963-19415982 Msa1183910:intron 45.0%
CGGTATTTAACTGCCAATGG+TGG + chr8_1:19415998-19416017 None:intergenic 45.0%
!! TTTGATGCCGGTTCACTTGA+AGG - chr8_1:19416019-19416038 Msa1183910:intron 45.0%
! TGTTTTCCCATGCCAAAAGC+CGG + chr8_1:19416081-19416100 None:intergenic 45.0%
GCAGGAAACATCATCAGCAA+AGG + chr8_1:19416332-19416351 None:intergenic 45.0%
GCTTAACTCACTGCGAAACA+AGG - chr8_1:19416476-19416495 Msa1183910:intron 45.0%
AGGGTGAGTGGATGGATAAT+AGG - chr8_1:19416545-19416564 Msa1183910:intron 45.0%
TCTGCAGAGTGAAGAATGCA+AGG - chr8_1:19416896-19416915 Msa1183910:CDS 45.0%
CTGCAGAGTGAAGAATGCAA+GGG - chr8_1:19416897-19416916 Msa1183910:CDS 45.0%
! AGCTGCCATCAATGGTCTTA+GGG - chr8_1:19417016-19417035 Msa1183910:intron 45.0%
AGAGTCCCTAAGACCATTGA+TGG + chr8_1:19417024-19417043 None:intergenic 45.0%
TGACAAAGCTCAACAAGCTG+AGG + chr8_1:19417056-19417075 None:intergenic 45.0%
!! CAGCTTGTTGAGCTTTGTCA+TGG - chr8_1:19417056-19417075 Msa1183910:intron 45.0%
GAGCAACACTGAGTCTGAAT+TGG + chr8_1:19417422-19417441 None:intergenic 45.0%
CACTAGGTGTGGTGTATGAA+TGG - chr8_1:19417653-19417672 Msa1183910:intron 45.0%
CAGCGAGTTCTGCGAAATTA+CGG - chr8_1:19417681-19417700 Msa1183910:intron 45.0%
TGTTTCCCTTAAGGTCAACC+TGG - chr8_1:19417897-19417916 Msa1183910:CDS 45.0%
! CTATTGCCAGGTTGACCTTA+AGG + chr8_1:19417906-19417925 None:intergenic 45.0%
ATTAACTGTCGTTGCTGCAC+AGG + chr8_1:19418086-19418105 None:intergenic 45.0%
TGTGCAGCAACGACAGTTAA+TGG - chr8_1:19418085-19418104 Msa1183910:intron 45.0%
TAGAATCAGCTCTGTCAGCT+TGG - chr8_1:19418365-19418384 Msa1183910:CDS 45.0%
GGAAGATATTGGACAAGGCT+TGG - chr8_1:19418780-19418799 Msa1183910:CDS 45.0%
! GAAGCATTCGAAGGCTATTG+AGG - chr8_1:19418876-19418895 Msa1183910:CDS 45.0%
AATCTACAGACAGGTTTGCC+TGG - chr8_1:19418922-19418941 Msa1183910:CDS 45.0%
AGGTTTGCCTGGAATGTTTC+AGG - chr8_1:19418933-19418952 Msa1183910:CDS 45.0%
GTCAATGCCTGAAACATTCC+AGG + chr8_1:19418943-19418962 None:intergenic 45.0%
!! TCTGTTCTGCTTTGGCTTTC+GGG - chr8_1:19419045-19419064 Msa1183910:CDS 45.0%
GGGGTGTGAGTTCAGTATAA+AGG - chr8_1:19419067-19419086 Msa1183910:CDS 45.0%
GAGGCAGTGCCTGAAAAAAT+CGG + chr8_1:19419093-19419112 None:intergenic 45.0%
TGAAAACTGACACGGACAAG+TGG - chr8_1:19419240-19419259 Msa1183910:five_prime_UTR 45.0%
!!! TTTTAATCATATATTTAAAT+TGG - chr8_1:19417184-19417203 Msa1183910:intron 5.0%
!! TTTAATCATATATTTAAATT+GGG - chr8_1:19417185-19417204 Msa1183910:intron 5.0%
GTGCAACCCATTGTTTCAGG+TGG + chr8_1:19414766-19414785 None:intergenic 50.0%
TCGACAACGAAGAAACGGTG+CGG - chr8_1:19414797-19414816 Msa1183910:three_prime_UTR 50.0%
TGTAACTCTCTTCGCCTCAC+CGG - chr8_1:19414898-19414917 Msa1183910:CDS 50.0%
TTTGTGGTTGTTACGGTGGC+TGG + chr8_1:19415033-19415052 None:intergenic 50.0%
!! CAGTTTCTGAAACACGTCGC+CGG - chr8_1:19415061-19415080 Msa1183910:CDS 50.0%
AACACGTCGCCGGAAAATTC+CGG - chr8_1:19415071-19415090 Msa1183910:CDS 50.0%
CAGTTCGGAAACTCGCTTCT+CGG + chr8_1:19415141-19415160 None:intergenic 50.0%
GCGGTTGGAATGAACCAGTT+CGG + chr8_1:19415156-19415175 None:intergenic 50.0%
GAATTTGGAGGAGAAGGAGG+AGG + chr8_1:19415240-19415259 None:intergenic 50.0%
TCGGAATTTGGAGGAGAAGG+AGG + chr8_1:19415243-19415262 None:intergenic 50.0%
TCGATTGGAAACGGAACGTG+AGG - chr8_1:19415422-19415441 Msa1183910:CDS 50.0%
ATTGGAAACGGAACGTGAGG+AGG - chr8_1:19415425-19415444 Msa1183910:CDS 50.0%
AAACGGAACGTGAGGAGGTT+CGG - chr8_1:19415430-19415449 Msa1183910:CDS 50.0%
!! AGGAGGTTCGGTGTAGTGAT+TGG - chr8_1:19415442-19415461 Msa1183910:CDS 50.0%
!! GGAGGTTCGGTGTAGTGATT+GGG - chr8_1:19415443-19415462 Msa1183910:CDS 50.0%
!! GAATTTTGAGAAAGCGGCGG+TGG - chr8_1:19415638-19415657 Msa1183910:intron 50.0%
CATCTCCGATAACCGATCTC+CGG + chr8_1:19415664-19415683 None:intergenic 50.0%
TTGGACCTCAAAGCCACCAT+TGG - chr8_1:19415982-19416001 Msa1183910:intron 50.0%
! AACTGCCAATGGTGGCTTTG+AGG + chr8_1:19415990-19416009 None:intergenic 50.0%
CAAGTGAACCGGCATCAAAC+CGG + chr8_1:19416018-19416037 None:intergenic 50.0%
AAAGTGGAGCAGAGGCTCTT+TGG + chr8_1:19416055-19416074 None:intergenic 50.0%
AAAGAGCCTCTGCTCCACTT+TGG - chr8_1:19416054-19416073 Msa1183910:intron 50.0%
!! TTTGGACCGGCTTTTGGCAT+GGG - chr8_1:19416072-19416091 Msa1183910:intron 50.0%
AATGAGTCGAGTAGGGTGAG+TGG - chr8_1:19416533-19416552 Msa1183910:intron 50.0%
CAGAGTGAAGAATGCAAGGG+AGG - chr8_1:19416900-19416919 Msa1183910:CDS 50.0%
ACTACCTCAGCTGCCATCAA+TGG - chr8_1:19417008-19417027 Msa1183910:intron 50.0%
! AAGACCATTGATGGCAGCTG+AGG + chr8_1:19417015-19417034 None:intergenic 50.0%
CAGCTGCCATCAATGGTCTT+AGG - chr8_1:19417015-19417034 Msa1183910:intron 50.0%
! AGTGTCTGGAACACGGTCAA+GGG + chr8_1:19418560-19418579 None:intergenic 50.0%
! AAGCGACAGTGTCTGGAACA+CGG + chr8_1:19418567-19418586 None:intergenic 50.0%
! TGTTCCAGACACTGTCGCTT+CGG - chr8_1:19418567-19418586 Msa1183910:CDS 50.0%
!! CTGTTCTGCTTTGGCTTTCG+GGG - chr8_1:19419046-19419065 Msa1183910:CDS 50.0%
!! TGTTCTGCTTTGGCTTTCGG+GGG - chr8_1:19419047-19419066 Msa1183910:CDS 50.0%
AAACTGACACGGACAAGTGG+AGG - chr8_1:19419243-19419262 Msa1183910:five_prime_UTR 50.0%
GCCGTGCAACCCATTGTTTC+AGG + chr8_1:19414769-19414788 None:intergenic 55.0%
ACAACGAAGAAACGGTGCGG+CGG - chr8_1:19414800-19414819 Msa1183910:three_prime_UTR 55.0%
CTGCTTCCTTCATGAGACGG+CGG + chr8_1:19414837-19414856 None:intergenic 55.0%
GAAAACGGCGGGAATGTCGT+CGG + chr8_1:19414968-19414987 None:intergenic 55.0%
CGAGAAGCGAGTTTCCGAAC+TGG - chr8_1:19415139-19415158 Msa1183910:CDS 55.0%
!! GGTTCGGTGTAGTGATTGGG+AGG - chr8_1:19415446-19415465 Msa1183910:CDS 55.0%
!! TCACCGGAATTTGTTGCCGG+CGG - chr8_1:19415522-19415541 Msa1183910:CDS 55.0%
TCACCGCCGGCAACAAATTC+CGG + chr8_1:19415528-19415547 None:intergenic 55.0%
ACCTCCTCGTCTTTCCTCAC+CGG + chr8_1:19415555-19415574 None:intergenic 55.0%
!! TGCCGGTTCACTTGAAGGAC+CGG - chr8_1:19416024-19416043 Msa1183910:intron 55.0%
!! CTCCACTTTGGACCGGCTTT+TGG - chr8_1:19416066-19416085 Msa1183910:intron 55.0%
TGCCAAAAGCCGGTCCAAAG+TGG + chr8_1:19416071-19416090 None:intergenic 55.0%
!! CTTTGGACCGGCTTTTGGCA+TGG - chr8_1:19416071-19416090 Msa1183910:intron 55.0%
AGTCGAGTAGGGTGAGTGGA+TGG - chr8_1:19416537-19416556 Msa1183910:intron 55.0%
! CAGTGTCTGGAACACGGTCA+AGG + chr8_1:19418561-19418580 None:intergenic 55.0%
!! GTTCTGCTTTGGCTTTCGGG+GGG - chr8_1:19419048-19419067 Msa1183910:CDS 55.0%
TTACGCTCGCCACTACCTCG+CGG - chr8_1:19414858-19414877 Msa1183910:CDS 60.0%
! GAAGGTGGAGAGTGCGGAAC+CGG + chr8_1:19414920-19414939 None:intergenic 60.0%
GGAGACAGCGAGAGGTTCAC+CGG + chr8_1:19414947-19414966 None:intergenic 60.0%
ATGTCGTCGGAGACAGCGAG+AGG + chr8_1:19414955-19414974 None:intergenic 60.0%
GTTGTTACGGTGGCTGGACG+AGG + chr8_1:19415027-19415046 None:intergenic 60.0%
TCGGCGGTTGAGAACGTTGC+CGG + chr8_1:19415272-19415291 None:intergenic 60.0%
!! GGAATTTGTTGCCGGCGGTG+AGG - chr8_1:19415527-19415546 Msa1183910:CDS 60.0%
GGTTCCGGTGAGGAAAGACG+AGG - chr8_1:19415548-19415567 Msa1183910:CDS 60.0%
TCCGGTGAGGAAAGACGAGG+AGG - chr8_1:19415551-19415570 Msa1183910:CDS 60.0%
TTTGAGAAAGCGGCGGTGGC+CGG - chr8_1:19415642-19415661 Msa1183910:intron 60.0%
GGTGGCCGGAGATCGGTTAT+CGG - chr8_1:19415656-19415675 Msa1183910:intron 60.0%
! GCCGGTTCACTTGAAGGACC+GGG - chr8_1:19416025-19416044 Msa1183910:intron 60.0%
GCCCGGTCCTTCAAGTGAAC+CGG + chr8_1:19416029-19416048 None:intergenic 60.0%
GGTTCACTTGAAGGACCGGG+CGG - chr8_1:19416028-19416047 Msa1183910:intron 60.0%
GCCTCTGCTCCACTTTGGAC+CGG - chr8_1:19416059-19416078 Msa1183910:intron 60.0%
GCTTCCGAAGCGACAGTGTC+TGG + chr8_1:19418574-19418593 None:intergenic 60.0%
ACACGGACAAGTGGAGGAGC+CGG - chr8_1:19419249-19419268 Msa1183910:five_prime_UTR 60.0%
!! AGAGCGCCGCCGTCTCATGA+AGG - chr8_1:19414828-19414847 Msa1183910:exon 65.0%
! TGGAGAGTGCGGAACCGGTG+AGG + chr8_1:19414915-19414934 None:intergenic 65.0%
GACAGCGAGAGGTTCACCGG+CGG + chr8_1:19414944-19414963 None:intergenic 65.0%
GTTACGGTGGCTGGACGAGG+AGG + chr8_1:19415024-19415043 None:intergenic 65.0%
TGTTGCCGGCGGTGAGGTTC+CGG - chr8_1:19415533-19415552 Msa1183910:CDS 65.0%
CAGAGGCTCTTTGGACCGCC+CGG + chr8_1:19416046-19416065 None:intergenic 65.0%
GCCGGTCCAAAGTGGAGCAG+AGG + chr8_1:19416063-19416082 None:intergenic 65.0%
AATCAGAGTGCGCCGCCGCG+AGG + chr8_1:19414876-19414895 None:intergenic 70.0%
GGCGGCGAAGGTGGAGAGTG+CGG + chr8_1:19414926-19414945 None:intergenic 70.0%
GCACTCTCCACCTTCGCCGC+CGG - chr8_1:19414925-19414944 Msa1183910:CDS 70.0%
AGGTTCACCGGCGGCGAAGG+TGG + chr8_1:19414935-19414954 None:intergenic 70.0%
GAGAGGTTCACCGGCGGCGA+AGG + chr8_1:19414938-19414957 None:intergenic 70.0%
GTGGCTGGACGAGGAGGTGG+CGG + chr8_1:19415018-19415037 None:intergenic 70.0%
ACGGTGGCTGGACGAGGAGG+TGG + chr8_1:19415021-19415040 None:intergenic 70.0%
CCTCACCGGAACCTCACCGC+CGG + chr8_1:19415541-19415560 None:intergenic 70.0%
AAGCGGCGGTGGCCGGAGAT+CGG - chr8_1:19415649-19415668 Msa1183910:intron 70.0%
CGCTCGCCACTACCTCGCGG+CGG - chr8_1:19414861-19414880 Msa1183910:CDS 75.0%
AGTGCGCCGCCGCGAGGTAG+TGG + chr8_1:19414870-19414889 None:intergenic 75.0%
CCGGCGGTGAGGTTCCGGTG+AGG - chr8_1:19415538-19415557 Msa1183910:CDS 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 19414599 19419272 19414599 ID=Msa1183910;Name=Msa1183910
chr8_1 mRNA 19414599 19419272 19414599 ID=Msa1183910-mRNA-1;Parent=Msa1183910;Name=Msa1183910-mRNA-1;_AED=0.03;_eAED=0.03;_QI=176|1|1|1|1|1|4|243|723
chr8_1 exon 19414599 19415643 19414599 ID=Msa1183910-mRNA-1:exon:7529;Parent=Msa1183910-mRNA-1
chr8_1 exon 19416793 19417019 19416793 ID=Msa1183910-mRNA-1:exon:7528;Parent=Msa1183910-mRNA-1
chr8_1 exon 19417751 19417935 19417751 ID=Msa1183910-mRNA-1:exon:7527;Parent=Msa1183910-mRNA-1
chr8_1 exon 19418139 19419272 19418139 ID=Msa1183910-mRNA-1:exon:7526;Parent=Msa1183910-mRNA-1
chr8_1 five_prime_UTR 19419097 19419272 19419097 ID=Msa1183910-mRNA-1:five_prime_utr;Parent=Msa1183910-mRNA-1
chr8_1 CDS 19418139 19419096 19418139 ID=Msa1183910-mRNA-1:cds;Parent=Msa1183910-mRNA-1
chr8_1 CDS 19417751 19417935 19417751 ID=Msa1183910-mRNA-1:cds;Parent=Msa1183910-mRNA-1
chr8_1 CDS 19416793 19417019 19416793 ID=Msa1183910-mRNA-1:cds;Parent=Msa1183910-mRNA-1
chr8_1 CDS 19414842 19415643 19414842 ID=Msa1183910-mRNA-1:cds;Parent=Msa1183910-mRNA-1
chr8_1 three_prime_UTR 19414599 19414841 19414599 ID=Msa1183910-mRNA-1:three_prime_utr;Parent=Msa1183910-mRNA-1
Gene Sequence

>Msa1183910

ATGGGTTGCACGGCGTCTAAACTCGACAACGAAGAAACGGTGCGGCGGTGCAAAGAGCGCCGCCGTCTCATGAAGGAAGCAGTTTACGCTCGCCACTACCTCGCGGCGGCGCACTCTGATTACTGTAACTCTCTTCGCCTCACCGGTTCCGCACTCTCCACCTTCGCCGCCGGTGAACCTCTCGCTGTCTCCGACGACATTCCCGCCGTTTTCATCAACACAGTAAAAACTCGTCAGACACCGCCACCTCCTCGTCCAGCCACCGTAACAACCACAAAACTCCGTACAGTTTCTGAAACACGTCGCCGGAAAATTCCGGTGAAGCTTCCACACATTCTCTCCGATTCAAGCGTTTGTTCAACGCCGAGAAGCGAGTTTCCGAACTGGTTCATTCCAACCGCGCATCAAAATGAATCAACAGCTTCTGAAACTTCTTCCGTTTGGAACTGGGAGAATTTTCATCCTCCTCCTTCTCCTCCAAATTCCGAATATTTCCGGCAACGTTCTCAACCGCCGAATCATAAACCGGAAAATCCAGAATCCGATACATCATCAGAATCGTTCTACAACATGTTCCACTCGAAAATTCATCTTCATAATCAAAATCAGAATCAGAATCACAAGACTGAAACGGAACAAGAACTAGATCGATTGGAAACGGAACGTGAGGAGGTTCGGTGTAGTGATTGGGAGGATTGCTACAGTTCAACAAGCTCATCAGATAGAGATGAAGTTATCGCCGAAAAATCACCGGAATTTGTTGCCGGCGGTGAGGTTCCGGTGAGGAAAGACGAGGAGGTGAATGAAGAAAAGGTGAAGATGAAGCATAAGGATTTGAAAGAGATAGTTGAAGTGATAAGAGAGAATTTTGAGAAAGCGGCGGTGGCCGGAGATCGGTTATCGGAGATGTTGCAGATTAGTAGGGCTCAACTTGATCGGAGTTTCAGTCAATTGAAAAAAATAGTGTATCACTCTAGTAATATACTGAGCAAAGTGAGCTCAACTTGGACCTCAAAGCCACCATTGGCAGTTAAATACCGGTTTGATGCCGGTTCACTTGAAGGACCGGGCGGTCCAAAGAGCCTCTGCTCCACTTTGGACCGGCTTTTGGCATGGGAAAACAAACTCTTTCAGGAAGTGAAGGCTAGAGAAGGTGTGAAGATTGAGCATGAAAGGAAATTGTCAACTCTGCAGAGTGAAGAATGCAAGGGAGGTGATGACGAAACAAAGATAGACAAAACCAAGGCTACCATAACAAGGTTACAGTCACTAATTATTGTAACATCTCAGGCTGTGTCTACTACCTCAGCTGCCATCAATGGTCTTAGGGACTCTGATCTTGTTCCTCAGCTTGTTGAGCTTTGTCATGGAATCATTCACATGTGGAGATCAATGCACCAGTACCATGAAATGCAAAGCAACATTGTACAGCAAGTTTGTGGCCTTGTGAACCAATCATCGAAAGGTCACTCAACATCCGAATCACACAAACAGGCAACTCGAGATCTAGAATCAGCTCTGTCAGCTTGGCATTCAAGTTTTATCCGGATCATAAAATTTCAAAGAGACTTTATTTTGTCACTACATGGTTGGTTTAAGCTGAATCTTATTCCAGTCAACAATGACAACAACAACAGCAGCATTAGCAACAAAATGGAACCATCTGATGCATTTTCCTTTTGTGATGGATGGAAACTAGCCCTTGACCGTGTTCCAGACACTGTCGCTTCGGAAGCAATCAAAAGCTTCATCAATGTTGTCCACGTAATATCAGTTAAGCAATGTCAAGAACTCAAGATTAAAAGGAAAACTGACACTGCTTACAAGGAACTTGAGAAAAAATCTTCATCTCTAAAAAACATAGAAAAGAAGTTTTACAACTCATATTCTATGGTTGGTATTGGAATAATTCCAAACTCTGTGGAAGATATTGGACAAGGCTTGGATGCAAGAGACCCTCTTGCTGAGAAAAAATTGGAACTTGAAGCTTGTCAAAGACGTGTCGACGATGAAAAGTTGAAGCATTCGAAGGCTATTGAGGTTACAAGAGCTATGACACTTAATAATCTACAGACAGGTTTGCCTGGAATGTTTCAGGCATTGACAAGTTTTTCTTCATTGTTCATTGAAGCTCTTGAATCAGTATGTGACCGTTCATATGCCATAAAGTAG

Protein sequence

>Msa1183910

MGCTASKLDNEETVRRCKERRRLMKEAVYARHYLAAAHSDYCNSLRLTGSALSTFAAGEPLAVSDDIPAVFINTVKTRQTPPPPRPATVTTTKLRTVSETRRRKIPVKLPHILSDSSVCSTPRSEFPNWFIPTAHQNESTASETSSVWNWENFHPPPSPPNSEYFRQRSQPPNHKPENPESDTSSESFYNMFHSKIHLHNQNQNQNHKTETEQELDRLETEREEVRCSDWEDCYSSTSSSDRDEVIAEKSPEFVAGGEVPVRKDEEVNEEKVKMKHKDLKEIVEVIRENFEKAAVAGDRLSEMLQISRAQLDRSFSQLKKIVYHSSNILSKVSSTWTSKPPLAVKYRFDAGSLEGPGGPKSLCSTLDRLLAWENKLFQEVKAREGVKIEHERKLSTLQSEECKGGDDETKIDKTKATITRLQSLIIVTSQAVSTTSAAINGLRDSDLVPQLVELCHGIIHMWRSMHQYHEMQSNIVQQVCGLVNQSSKGHSTSESHKQATRDLESALSAWHSSFIRIIKFQRDFILSLHGWFKLNLIPVNNDNNNSSISNKMEPSDAFSFCDGWKLALDRVPDTVASEAIKSFINVVHVISVKQCQELKIKRKTDTAYKELEKKSSSLKNIEKKFYNSYSMVGIGIIPNSVEDIGQGLDARDPLAEKKLELEACQRRVDDEKLKHSKAIEVTRAMTLNNLQTGLPGMFQALTSFSSLFIEALESVCDRSYAIK*