AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0772220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0772220 MtrunA17_Chr5g0409741 98.182 550 6 1 1 550 1 546 0.0 1087
Msa0772220 MtrunA17_Chr8g0369321 59.506 405 141 6 149 550 1 385 1.10e-158 457
Msa0772220 MtrunA17_Chr8g0369331 56.322 87 37 1 48 133 15 101 1.86e-31 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 141 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGCTCTCCGGTGGTTTC+TGG 0.135799 5_2:+46527436 Msa0772220:CDS
GGAATTGTTGTGTTGCTATT+TGG 0.217379 5_2:+46527355 Msa0772220:CDS
CCTTCTAGATTTGAAACTTT+TGG 0.246591 5_2:+46523374 Msa0772220:CDS
TGCTGAAAACTTTGAACTTA+TGG 0.252202 5_2:-46526258 None:intergenic
GCCATAGCTGCACCAATTCT+TGG 0.258567 5_2:+46526317 Msa0772220:CDS
AGAGCGATATTATGAGTCTT+TGG 0.272001 5_2:+46526690 Msa0772220:CDS
TCGCTTCTGTCTTCAGGGTT+TGG 0.279277 5_2:+46527073 Msa0772220:CDS
TTTAATTTAAGTTGAGGATT+TGG 0.281047 5_2:+46527732 Msa0772220:three_prime_UTR
TTCAAATATCCTCATGCTAT+TGG 0.284045 5_2:+46526830 Msa0772220:CDS
GGATATTTGAAGATGGAAAA+AGG 0.290219 5_2:-46526818 None:intergenic
GCTACCGCTGCTGGTTGTTT+TGG 0.298634 5_2:+46526611 Msa0772220:CDS
GCTGCAACTGTGATGAGTTT+TGG 0.299283 5_2:-46526371 None:intergenic
GTGGATTAATTTGGCTTGTT+GGG 0.311746 5_2:+46526729 Msa0772220:CDS
AAGAAGGTGCTTTCTCTATA+TGG 0.325715 5_2:+46527224 Msa0772220:CDS
GCTGGTGGTGCTGTTGCTGC+AGG 0.337983 5_2:+46527391 Msa0772220:CDS
CCAAAAGTTTCAAATCTAGA+AGG 0.341466 5_2:-46523374 None:intergenic
TGCTTTCTTGAGAGTTGTTC+CGG 0.346386 5_2:-46526543 None:intergenic
ACGGACACAGTCACTGGAAA+TGG 0.347797 5_2:+46527104 Msa0772220:CDS
CATCGAGTTCGTGTATCATA+TGG 0.363899 5_2:-46526661 None:intergenic
GCCATTCAGAGCACATCAAC+AGG 0.364880 5_2:+46527148 Msa0772220:CDS
ATCTTCATTCCCTACATTGC+CGG 0.366801 5_2:+46526449 Msa0772220:CDS
CAGTTGGGCCAGGACGGATT+AGG 0.378121 5_2:+46527296 Msa0772220:CDS
TCAGGGTTTGGATTCTATTA+CGG 0.378827 5_2:+46527085 Msa0772220:CDS
TCAACGGTTACCTCTTTCAT+TGG 0.381125 5_2:-46523158 None:intergenic
GAGCGATATTATGAGTCTTT+GGG 0.383579 5_2:+46526691 Msa0772220:CDS
AGTGGATTAATTTGGCTTGT+TGG 0.385611 5_2:+46526728 Msa0772220:CDS
ACATCAATTGCTTGGGCTAC+AGG 0.393116 5_2:+46526290 Msa0772220:CDS
TTGTTGGACAGCTTTGCATT+AGG 0.398635 5_2:+46526921 Msa0772220:CDS
TCCTTTCCTTCCACCTCGAC+GGG 0.401554 5_2:+46526342 Msa0772220:CDS
GAGCTGCAGGTTTGTGTGTC+GGG 0.405501 5_2:+46527260 Msa0772220:CDS
AACGAGTGGGAAAAGGAAAT+AGG 0.408665 5_2:-46526972 None:intergenic
TCGCTTCATGCTACCGCTGC+TGG 0.410431 5_2:+46526602 Msa0772220:CDS
CGGACACAGTCACTGGAAAT+GGG 0.411485 5_2:+46527105 Msa0772220:CDS
AGGACAGTGGTAAGAGAAGA+AGG 0.414441 5_2:-46523076 None:intergenic
CTTTCTCTATATGGTATGCT+TGG 0.415039 5_2:+46527233 Msa0772220:CDS
GGGTTCACAGTTGGTTCAGT+TGG 0.419215 5_2:+46527280 Msa0772220:CDS
CTCATCACAGTTGCAGCAAC+AGG 0.423526 5_2:+46526377 Msa0772220:CDS
CAACGGTTACCTCTTTCATT+GGG 0.429318 5_2:-46523157 None:intergenic
CTTGAGAGTTGTTCCGGTGA+AGG 0.430405 5_2:-46526537 None:intergenic
TCAGCTCTGTTGTGTAAGTC+AGG 0.431402 5_2:-46523296 None:intergenic
AGAGCTAGAGAAGCTTATAA+TGG 0.439562 5_2:+46523329 Msa0772220:CDS
CTACTGTTTCACTTCAAGAA+TGG 0.440649 5_2:+46523489 Msa0772220:CDS
TGGAATGGACATCAATTGCT+TGG 0.448789 5_2:+46526282 Msa0772220:CDS
TTCCTTTCCTTCCACCTCGA+CGG 0.451958 5_2:+46526341 Msa0772220:CDS
CTCATGATCCGCGCCTTCAC+CGG 0.455419 5_2:+46526524 Msa0772220:CDS
GGTGTTAGATTGTGCTCCAT+CGG 0.459276 5_2:+46527198 Msa0772220:CDS
CGGTGAAGATGCAGATCGTT+GGG 0.462336 5_2:+46527041 Msa0772220:CDS
GGTTCACAGTTGGTTCAGTT+GGG 0.464283 5_2:+46527281 Msa0772220:CDS
GTGTTAGATTGTGCTCCATC+GGG 0.470775 5_2:+46527199 Msa0772220:CDS
TTTCTTCATCCCAATGAAAG+AGG 0.476943 5_2:+46523148 Msa0772220:exon
AAGGAAAGGAAGCCAAGAAT+TGG 0.479551 5_2:-46526329 None:intergenic
TATAATGGTTATGAAGAAGT+TGG 0.482116 5_2:+46523344 Msa0772220:CDS
TGGCACTCACTGCTCTCAAA+AGG 0.482913 5_2:+46523526 Msa0772220:CDS
GGAATGGACATCAATTGCTT+GGG 0.484450 5_2:+46526283 Msa0772220:CDS
AAAACTAATGAATGGATTGA+GGG 0.487114 5_2:+46527524 Msa0772220:three_prime_UTR
ATCTTAACCACGCGCAGTAA+AGG 0.487567 5_2:-46527013 None:intergenic
ATAATGAGAGGAAAGACAAC+AGG 0.494062 5_2:-46523446 None:intergenic
TGCTATGATGCCGGCAATGT+AGG 0.494836 5_2:-46526459 None:intergenic
TCTATTACGGACACAGTCAC+TGG 0.495368 5_2:+46527098 Msa0772220:CDS
GCCAAGAATTGGTGCAGCTA+TGG 0.496623 5_2:-46526318 None:intergenic
GCTATGATGCCGGCAATGTA+GGG 0.500968 5_2:-46526458 None:intergenic
CTGGTGGTGCTGTTGCTGCA+GGG 0.503512 5_2:+46527392 Msa0772220:CDS
TGCTGCATTAGCAACTGTGC+TGG 0.512568 5_2:-46526483 None:intergenic
ACAATGAAACGAGTGGGAAA+AGG 0.514084 5_2:-46526979 None:intergenic
ACAGTTGGTTCAGTTGGGCC+AGG 0.514316 5_2:+46527286 Msa0772220:CDS
GACACCACCTTCAGCTTCAA+CGG 0.516913 5_2:-46523174 None:intergenic
CCCTGTTGATGTGCTCTGAA+TGG 0.519342 5_2:-46527149 None:intergenic
TGTGCTCCATCGGGAAAAGA+AGG 0.520552 5_2:+46527208 Msa0772220:CDS
GAGGAAAGAAAATAAAAGAG+AGG 0.520821 5_2:-46523054 None:intergenic
TAGTGTAGTGAGAGTGAGTA+GGG 0.523593 5_2:-46522976 None:intergenic
TCACTGGAAATGGGGACACT+TGG 0.526145 5_2:+46527114 Msa0772220:CDS
GGACGGATTAGGACTTCGTT+CGG 0.527260 5_2:+46527307 Msa0772220:CDS
TTGTGTGTCGGGTTCACAGT+TGG 0.527867 5_2:+46527271 Msa0772220:CDS
GTAGTGAGAGTGAGTAGGGT+GGG 0.528498 5_2:-46522972 None:intergenic
AGAGCTGCAGGTTTGTGTGT+CGG 0.529302 5_2:+46527259 Msa0772220:CDS
GAAGCTGAAGGTGGTGTCCT+TGG 0.531829 5_2:+46523179 Msa0772220:CDS
TCGGTGAAGATGCAGATCGT+TGG 0.534098 5_2:+46527040 Msa0772220:CDS
AAATATCCTCATGCTATTGG+AGG 0.534903 5_2:+46526833 Msa0772220:CDS
GGTAGCATGAAGCGAGAGAC+GGG 0.538468 5_2:-46526594 None:intergenic
TCCCGTCGAGGTGGAAGGAA+AGG 0.538718 5_2:-46526343 None:intergenic
AGGAAAGAAAATAAAAGAGA+GGG 0.539601 5_2:-46523053 None:intergenic
GAAGGTGGTGTCCTTGGCCA+TGG 0.540959 5_2:+46523185 Msa0772220:CDS
GCTGGATTCTTCAAAGTCAC+AGG 0.541392 5_2:+46526425 Msa0772220:CDS
CGGTGAAGGCGCGGATCATG+AGG 0.544790 5_2:-46526523 None:intergenic
CCTTGCATCATTCACAACAA+TGG 0.547908 5_2:+46526871 Msa0772220:CDS
CTTGGCCATGGACATGGACA+TGG 0.548231 5_2:+46523197 Msa0772220:CDS
CATGTCCATGTCCATGGCCA+AGG 0.551684 5_2:-46523196 None:intergenic
CATGGTCATGGTCATGGTCA+AGG 0.553809 5_2:+46523221 Msa0772220:CDS
AACGAAGTCCTAATCCGTCC+TGG 0.555456 5_2:-46527304 None:intergenic
TTTGGAAACATCAGTGATGC+TGG 0.565468 5_2:+46527373 Msa0772220:CDS
GGTGTCCTTGGCCATGGACA+TGG 0.565826 5_2:+46523191 Msa0772220:CDS
TGTAGTGAGAGTGAGTAGGG+TGG 0.566435 5_2:-46522973 None:intergenic
GTGACTTTGAAGAATCCAGC+CGG 0.572168 5_2:-46526422 None:intergenic
GAATGGAACAAAACTCATCC+TGG 0.572504 5_2:+46523506 Msa0772220:CDS
CGATAACGAGAGAAGCTCTC+CGG 0.572999 5_2:+46527426 Msa0772220:CDS
GCAGCTTCAGAAGTTGCTAA+AGG 0.575778 5_2:+46523251 Msa0772220:CDS
AGCATGAGGATATTTGAAGA+TGG 0.576279 5_2:-46526825 None:intergenic
GCATAAAGAAAATGTGTTGG+TGG 0.577106 5_2:+46527836 Msa0772220:three_prime_UTR
CGGTAGCATGAAGCGAGAGA+CGG 0.579495 5_2:-46526595 None:intergenic
GAAATTCCCGTCGAGGTGGA+AGG 0.585421 5_2:-46526348 None:intergenic
GCTACAACCTTTACTGCGCG+TGG 0.586433 5_2:+46527006 Msa0772220:CDS
TGTGCTGGCTGCTATGATGC+CGG 0.588369 5_2:-46526468 None:intergenic
TATGCTTGGATGAGAGCTGC+AGG 0.590623 5_2:+46527247 Msa0772220:CDS
CTAGTGTAGTGAGAGTGAGT+AGG 0.590844 5_2:-46522977 None:intergenic
TTGGTTCAGTTGGGCCAGGA+CGG 0.593555 5_2:+46527290 Msa0772220:CDS
CATGTCCATGTCCATGTCCA+TGG 0.598261 5_2:-46523202 None:intergenic
GAGGTAACCGTTGAAGCTGA+AGG 0.598999 5_2:+46523167 Msa0772220:CDS
ACAGTTGCAGCAACAGGTGT+AGG 0.603510 5_2:+46526383 Msa0772220:CDS
GAGTAATGGTGAGAGGACAG+TGG 0.613645 5_2:-46523089 None:intergenic
TGACTTTGAAGAATCCAGCC+GGG 0.614345 5_2:-46526421 None:intergenic
TACAGGTATAACAAACTCAC+TGG 0.616362 5_2:+46526230 Msa0772220:intron
CGAAAATGAGATCGAATCAG+TGG 0.616487 5_2:-46526783 None:intergenic
CATTCTTGAAGTGAAACAGT+AGG 0.619087 5_2:-46523488 None:intergenic
TAGTGAGAGTGAGTAGGGTG+GGG 0.619947 5_2:-46522971 None:intergenic
TGAAGCTGACTGATAATGAG+AGG 0.621573 5_2:-46523458 None:intergenic
GCAGCACACACACAGCATCT+CGG 0.621598 5_2:+46526500 Msa0772220:CDS
ATGGATTGAGGGATGAATGA+TGG 0.623017 5_2:+46527535 Msa0772220:three_prime_UTR
TATGCATAAAGAAAATGTGT+TGG 0.624754 5_2:+46527833 Msa0772220:three_prime_UTR
GCAGCGACAATGAAACGAGT+GGG 0.628600 5_2:-46526985 None:intergenic
ACCACCAAAACAACCAGCAG+CGG 0.633849 5_2:-46526615 None:intergenic
GAGTTGTTCCGGTGAAGGCG+CGG 0.634731 5_2:-46526532 None:intergenic
CATGGACATGGTCATGGTCA+TGG 0.635962 5_2:+46523215 Msa0772220:CDS
CAGAACAAAAGCAAATGCAA+TGG 0.636950 5_2:-46526944 None:intergenic
CATGGACATGGACATGGACA+TGG 0.640153 5_2:+46523203 Msa0772220:CDS
TCGGAATGAGTAATGGTGAG+AGG 0.648325 5_2:-46523096 None:intergenic
GAATCTAAACCAGAAACCAC+CGG 0.650603 5_2:-46527445 None:intergenic
GGACACAGTCACTGGAAATG+GGG 0.658492 5_2:+46527106 Msa0772220:CDS
ACAGTGGTAAGAGAAGAAGG+AGG 0.659884 5_2:-46523073 None:intergenic
CATGGACATGGACATGGTCA+TGG 0.665061 5_2:+46523209 Msa0772220:CDS
TTGGGAAATTCCCGTCGAGG+TGG 0.666170 5_2:-46526352 None:intergenic
TAACGAGAGAAGCTCTCCGG+TGG 0.667063 5_2:+46527429 Msa0772220:CDS
GAGGGATGAATGATGGTGCA+TGG 0.669535 5_2:+46527542 Msa0772220:three_prime_UTR
TCTTGAAGTGAAACAGTAGG+TGG 0.671080 5_2:-46523485 None:intergenic
CCATTGTTGTGAATGATGCA+AGG 0.672745 5_2:-46526871 None:intergenic
CCATTCAGAGCACATCAACA+GGG 0.673190 5_2:+46527149 Msa0772220:CDS
AGCAGCGACAATGAAACGAG+TGG 0.675685 5_2:-46526986 None:intergenic
GCAAGACCTCCAATAGCATG+AGG 0.680349 5_2:-46526839 None:intergenic
GTAACCGTTGAAGCTGAAGG+TGG 0.694916 5_2:+46523170 Msa0772220:CDS
GCGCGTGGTTAAGATGAACT+CGG 0.697491 5_2:+46527021 Msa0772220:CDS
GGTCATGGTCATGGTCAAGG+TGG 0.728143 5_2:+46523224 Msa0772220:CDS
GGAAACATCAGTGATGCTGG+TGG 0.756197 5_2:+46527376 Msa0772220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAATTTAAAAATTA+TGG + chr5_2:46524249-46524268 Msa0772220:intron 0.0%
!! AAATATAAAAAACATATCTT+AGG - chr5_2:46523582-46523601 None:intergenic 10.0%
!! AAAATATAAACTTACAAATA+GGG - chr5_2:46523632-46523651 None:intergenic 10.0%
!! AAAAATATAAACTTACAAAT+AGG - chr5_2:46523633-46523652 None:intergenic 10.0%
!!! CAAATTTTTTTTATAGTTTT+TGG + chr5_2:46524133-46524152 Msa0772220:intron 10.0%
!!! AATTTTTTTATTACATAACT+GGG - chr5_2:46524229-46524248 None:intergenic 10.0%
!!! TAATTTTTTTATTACATAAC+TGG - chr5_2:46524230-46524249 None:intergenic 10.0%
!! GTAAAATTAATAAAAAATTC+TGG + chr5_2:46524367-46524386 Msa0772220:intron 10.0%
!! CAAAAAATATTAAAAAATTC+TGG + chr5_2:46524416-46524435 Msa0772220:intron 10.0%
!!! ATAAAAAATTCTAAAAAATC+TGG + chr5_2:46524539-46524558 Msa0772220:intron 10.0%
!! GAAAAAATATTAAAAAATTC+TGG - chr5_2:46524706-46524725 None:intergenic 10.0%
!!! CAATTTTTTTTTATAGTTTT+TGG - chr5_2:46524907-46524926 None:intergenic 10.0%
!! AATTTAACAAAAACAAAAAA+TGG - chr5_2:46525015-46525034 None:intergenic 10.0%
!! ACAAAAATTAAGTTAAATAT+TGG + chr5_2:46525227-46525246 Msa0772220:intron 10.0%
!! GTAAATTTAAATTTAATTGT+CGG + chr5_2:46525566-46525585 Msa0772220:intron 10.0%
!! TAAAATATAAATGTAAATGT+AGG - chr5_2:46526162-46526181 None:intergenic 10.0%
!! AGAAAATAAGAAAGAAAAAA+GGG - chr5_2:46523127-46523146 None:intergenic 15.0%
!!! ATTTTTCAAAAAATACAACT+TGG - chr5_2:46523879-46523898 None:intergenic 15.0%
!!! AATATTTTGTAGTATGATTT+GGG + chr5_2:46523944-46523963 Msa0772220:intron 15.0%
!! AACTATAAAAAAAATTTGCA+GGG - chr5_2:46524131-46524150 None:intergenic 15.0%
!! AAACTATAAAAAAAATTTGC+AGG - chr5_2:46524132-46524151 None:intergenic 15.0%
!!! ATTTTTTTATTACATAACTG+GGG - chr5_2:46524228-46524247 None:intergenic 15.0%
!! AAACTATAAAAAAAAATTGC+AGG + chr5_2:46524908-46524927 Msa0772220:intron 15.0%
!! AACTATAAAAAAAAATTGCA+GGG + chr5_2:46524909-46524928 Msa0772220:intron 15.0%
!!! TTTTTCTTAGTAAAATCTAA+AGG - chr5_2:46524942-46524961 None:intergenic 15.0%
!!! ATTTTACTAAGAAAAAAGTA+TGG + chr5_2:46524946-46524965 Msa0772220:intron 15.0%
!!! TTTTACTAAGAAAAAAGTAT+GGG + chr5_2:46524947-46524966 Msa0772220:intron 15.0%
!!! ATTTTTGTTGTATATATCAA+TGG - chr5_2:46525215-46525234 None:intergenic 15.0%
!!! ATGTAATTTATTTTTTCACT+AGG + chr5_2:46525467-46525486 Msa0772220:intron 15.0%
!! AATTATGTAAAAGTAAAAAG+TGG + chr5_2:46525501-46525520 Msa0772220:intron 15.0%
!! TTAAACAATAATAATTGTCT+AGG + chr5_2:46525682-46525701 Msa0772220:intron 15.0%
!! TAAACAATAATAATTGTCTA+GGG + chr5_2:46525683-46525702 Msa0772220:intron 15.0%
!! AAATCAAATAATAATTCCAA+AGG - chr5_2:46525767-46525786 None:intergenic 15.0%
!!! TTTCTTTTTAATTTAAGTTG+AGG + chr5_2:46527726-46527745 Msa0772220:three_prime_UTR 15.0%
!! AAAATAAGAAAGAAAAAAGG+GGG - chr5_2:46523125-46523144 None:intergenic 20.0%
!! GAAAATAAGAAAGAAAAAAG+GGG - chr5_2:46523126-46523145 None:intergenic 20.0%
!! GAGAAAATAAGAAAGAAAAA+AGG - chr5_2:46523128-46523147 None:intergenic 20.0%
!! TATCTTAGGAAAAAAAAATG+TGG - chr5_2:46523568-46523587 None:intergenic 20.0%
!!! TTTTTTGAAAGAATCTAAGT+GGG - chr5_2:46523739-46523758 None:intergenic 20.0%
!!! TTTTTTTGAAAGAATCTAAG+TGG - chr5_2:46523740-46523759 None:intergenic 20.0%
!! TTAGTTAGAAATATCTAAGT+GGG - chr5_2:46523771-46523790 None:intergenic 20.0%
!! ATTAGTTAGAAATATCTAAG+TGG - chr5_2:46523772-46523791 None:intergenic 20.0%
!!! CAATATTTTGTAGTATGATT+TGG + chr5_2:46523943-46523962 Msa0772220:intron 20.0%
!!! TTTTTTGAAAAAAGTAGTAG+TGG + chr5_2:46523976-46523995 Msa0772220:intron 20.0%
!!! TTTTTAGATTGGCTTAAATA+TGG + chr5_2:46524066-46524085 Msa0772220:intron 20.0%
!!! TTTTAGATTGGCTTAAATAT+GGG + chr5_2:46524067-46524086 Msa0772220:intron 20.0%
!!! TTTACTAAGAAAAAAGTATG+GGG + chr5_2:46524948-46524967 Msa0772220:intron 20.0%
!!! TGAAAGTGGTTTTTTAAAAA+AGG - chr5_2:46525144-46525163 None:intergenic 20.0%
!! ATATTTATTGGAGATCTTTA+AGG - chr5_2:46525405-46525424 None:intergenic 20.0%
!! ATCTCCAATAAATATATGAT+TGG + chr5_2:46525410-46525429 Msa0772220:intron 20.0%
!!! TAATTTATTTTTTCACTAGG+TGG + chr5_2:46525470-46525489 Msa0772220:intron 20.0%
!! TCAAGTACAATAATACAAAA+TGG + chr5_2:46525723-46525742 Msa0772220:intron 20.0%
!!! GATCAAATCATAATTCTTTT+TGG - chr5_2:46525793-46525812 None:intergenic 20.0%
!! AAAAACTAACTAATATGACA+AGG - chr5_2:46526049-46526068 None:intergenic 20.0%
!! AAGAAGAAAAAACTAATGAA+TGG + chr5_2:46527516-46527535 Msa0772220:three_prime_UTR 20.0%
!!! TTGTATGATTGATTTTAGTT+AGG + chr5_2:46527645-46527664 Msa0772220:three_prime_UTR 20.0%
!!! TTTAATTTAAGTTGAGGATT+TGG + chr5_2:46527732-46527751 Msa0772220:three_prime_UTR 20.0%
! TGTTTAGGAAAAACAACAAA+AGG - chr5_2:46523014-46523033 None:intergenic 25.0%
! AGGAAAGAAAATAAAAGAGA+GGG - chr5_2:46523056-46523075 None:intergenic 25.0%
! AAATAAGAAAGAAAAAAGGG+GGG - chr5_2:46523124-46523143 None:intergenic 25.0%
! TATAATGGTTATGAAGAAGT+TGG + chr5_2:46523344-46523363 Msa0772220:CDS 25.0%
!! CCAAAAACAAAAATTTTGCA+GGG - chr5_2:46524192-46524211 None:intergenic 25.0%
!! TCCAAAAACAAAAATTTTGC+AGG - chr5_2:46524193-46524212 None:intergenic 25.0%
!! ATTTTTCCAGATTTTTTGCA+GGG + chr5_2:46524880-46524899 Msa0772220:intron 25.0%
!!! CAAAAAATGGCCTTATTTTA+TGG - chr5_2:46525002-46525021 None:intergenic 25.0%
! ATAAGTTTGCAATCATGAAA+AGG + chr5_2:46525061-46525080 Msa0772220:intron 25.0%
! TGTACCAAGGTTAATAAATA+GGG - chr5_2:46525185-46525204 None:intergenic 25.0%
! TTGTACCAAGGTTAATAAAT+AGG - chr5_2:46525186-46525205 None:intergenic 25.0%
! AGGTCCAATCATATATTTAT+TGG - chr5_2:46525417-46525436 None:intergenic 25.0%
! CATAAAAGTTTCTTACACAT+AGG - chr5_2:46525437-46525456 None:intergenic 25.0%
!! CTATGTGTAAGAAACTTTTA+TGG + chr5_2:46525435-46525454 Msa0772220:intron 25.0%
! TATGTAAAAGTAAAAAGTGG+TGG + chr5_2:46525504-46525523 Msa0772220:intron 25.0%
! ATATTTCCAAAAGAAACCTT+TGG + chr5_2:46525748-46525767 Msa0772220:intron 25.0%
!! ATAATTCCAAAGGTTTCTTT+TGG - chr5_2:46525757-46525776 None:intergenic 25.0%
!!! TTGATCAATCAATGTTTTGA+AGG + chr5_2:46525807-46525826 Msa0772220:intron 25.0%
!!! TGATCAATCAATGTTTTGAA+GGG + chr5_2:46525808-46525827 Msa0772220:intron 25.0%
! TTCAAAGTTTGTAAAACAAC+AGG + chr5_2:46525840-46525859 Msa0772220:intron 25.0%
! GATATTTGAAGATGGAAAAA+GGG - chr5_2:46526820-46526839 None:intergenic 25.0%
!!! AAAAACTAATGAATGGATTG+AGG + chr5_2:46527523-46527542 Msa0772220:three_prime_UTR 25.0%
!!! AAAACTAATGAATGGATTGA+GGG + chr5_2:46527524-46527543 Msa0772220:three_prime_UTR 25.0%
! TATGCATAAAGAAAATGTGT+TGG + chr5_2:46527833-46527852 Msa0772220:three_prime_UTR 25.0%
!!! GTTGTGTTTGTGTTTTGTTT+AGG - chr5_2:46523029-46523048 None:intergenic 30.0%
GAGGAAAGAAAATAAAAGAG+AGG - chr5_2:46523057-46523076 None:intergenic 30.0%
CCAAAAGTTTCAAATCTAGA+AGG - chr5_2:46523377-46523396 None:intergenic 30.0%
!! CCTTCTAGATTTGAAACTTT+TGG + chr5_2:46523374-46523393 Msa0772220:CDS 30.0%
!! CTAGATTTGAAACTTTTGGT+TGG + chr5_2:46523378-46523397 Msa0772220:CDS 30.0%
TTTGCTAGTGAATTTAGTCA+TGG - chr5_2:46523607-46523626 None:intergenic 30.0%
! AAGAATCTAAGTGGGATTTT+TGG - chr5_2:46523731-46523750 None:intergenic 30.0%
!!! GTTTTTTTTGCTAGTGAACT+TGG - chr5_2:46523839-46523858 None:intergenic 30.0%
! ATTGGCTTAAATATGGGTAT+TGG + chr5_2:46524073-46524092 Msa0772220:intron 30.0%
!!! AAAACTTGCCTATTTTTGCA+GGG - chr5_2:46524160-46524179 None:intergenic 30.0%
!!! CCCTGCAAAATTTTTGTTTT+TGG + chr5_2:46524189-46524208 Msa0772220:intron 30.0%
! CATTTTTCCAGATTTTTTGC+AGG + chr5_2:46524879-46524898 Msa0772220:intron 30.0%
! TAAGAAAAAAGTATGGGGTA+TGG + chr5_2:46524953-46524972 Msa0772220:intron 30.0%
! TATTTTATGGAACCCTATGT+TGG - chr5_2:46524989-46525008 None:intergenic 30.0%
ACATAGGGTTCCATAAAATA+AGG + chr5_2:46524989-46525008 Msa0772220:intron 30.0%
! CAAACTTATAGTGGAACAAA+CGG - chr5_2:46525050-46525069 None:intergenic 30.0%
TCATGATTGCAAACTTATAG+TGG - chr5_2:46525059-46525078 None:intergenic 30.0%
!! TAATAAATAGGGTTGATGTC+CGG - chr5_2:46525174-46525193 None:intergenic 30.0%
TCAACCCTATTTATTAACCT+TGG + chr5_2:46525178-46525197 Msa0772220:intron 30.0%
CAATGGTTAATATTGTACCA+AGG - chr5_2:46525198-46525217 None:intergenic 30.0%
!!! CTCTCTCTTGTTTTATTGTT+TGG - chr5_2:46525253-46525272 None:intergenic 30.0%
!!! AGTGGTGGATACTTTTTTTA+AGG + chr5_2:46525519-46525538 Msa0772220:intron 30.0%
TAAAAACAGCTTCATCTTGT+CGG - chr5_2:46525642-46525661 None:intergenic 30.0%
CACTTCAGATTTCCATTTAA+TGG + chr5_2:46525933-46525952 Msa0772220:intron 30.0%
GCATATTAACGACCATTAAA+TGG - chr5_2:46525948-46525967 None:intergenic 30.0%
! ATTTTGTGCTGTGAAAAACA+CGG + chr5_2:46525973-46525992 Msa0772220:intron 30.0%
AAGGAATAACTTAGTGGTTT+AGG - chr5_2:46526091-46526110 None:intergenic 30.0%
TGTAGCACATATGTAAACTT+TGG - chr5_2:46526214-46526233 None:intergenic 30.0%
AAAGTTTACATATGTGCTAC+AGG + chr5_2:46526213-46526232 Msa0772220:intron 30.0%
TGCTGAAAACTTTGAACTTA+TGG - chr5_2:46526261-46526280 None:intergenic 30.0%
! AAGTTCAAAGTTTTCAGCAT+TGG + chr5_2:46526262-46526281 Msa0772220:CDS 30.0%
!!! CGATTTTCAGTGGATTAATT+TGG + chr5_2:46526720-46526739 Msa0772220:CDS 30.0%
GGATATTTGAAGATGGAAAA+AGG - chr5_2:46526821-46526840 None:intergenic 30.0%
TTCAAATATCCTCATGCTAT+TGG + chr5_2:46526830-46526849 Msa0772220:CDS 30.0%
CATGCAACAGTAGAAAAAAA+GGG + chr5_2:46527612-46527631 Msa0772220:three_prime_UTR 30.0%
ATGCAACAGTAGAAAAAAAG+GGG + chr5_2:46527613-46527632 Msa0772220:three_prime_UTR 30.0%
TTTCTTCATCCCAATGAAAG+AGG + chr5_2:46523148-46523167 Msa0772220:exon 35.0%
AGAGCTAGAGAAGCTTATAA+TGG + chr5_2:46523329-46523348 Msa0772220:CDS 35.0%
ATAATGAGAGGAAAGACAAC+AGG - chr5_2:46523449-46523468 None:intergenic 35.0%
CATTCTTGAAGTGAAACAGT+AGG - chr5_2:46523491-46523510 None:intergenic 35.0%
CTACTGTTTCACTTCAAGAA+TGG + chr5_2:46523489-46523508 Msa0772220:CDS 35.0%
CTTGGTTACTTACTCTAAGT+GGG - chr5_2:46523861-46523880 None:intergenic 35.0%
ACTTGGTTACTTACTCTAAG+TGG - chr5_2:46523862-46523881 None:intergenic 35.0%
!! TTTTTGGTCCCTGCAAAAAT+AGG + chr5_2:46524149-46524168 Msa0772220:intron 35.0%
!!! CAAAACTTGCCTATTTTTGC+AGG - chr5_2:46524161-46524180 None:intergenic 35.0%
! CTGCAAAAATAGGCAAGTTT+TGG + chr5_2:46524159-46524178 Msa0772220:intron 35.0%
TTATTACATAACTGGGGTCA+GGG - chr5_2:46524222-46524241 None:intergenic 35.0%
TTTATTACATAACTGGGGTC+AGG - chr5_2:46524223-46524242 None:intergenic 35.0%
GGTTTGTAACAAAGCCATAA+AGG - chr5_2:46525092-46525111 None:intergenic 35.0%
ACCAACTTTACTCTTACTCA+AGG + chr5_2:46525109-46525128 Msa0772220:intron 35.0%
CCAACTTTACTCTTACTCAA+GGG + chr5_2:46525110-46525129 Msa0772220:intron 35.0%
CACATGATTAAGGAGTTTCA+AGG - chr5_2:46525352-46525371 None:intergenic 35.0%
GTTGTTGTGTCACATGATTA+AGG - chr5_2:46525362-46525381 None:intergenic 35.0%
GAAAACAAGCATATTGCACA+TGG - chr5_2:46525896-46525915 None:intergenic 35.0%
! TTTTGTGCTGTGAAAAACAC+GGG + chr5_2:46525974-46525993 Msa0772220:intron 35.0%
TTCTCGAAGGAATAACTTAG+TGG - chr5_2:46526097-46526116 None:intergenic 35.0%
CATCGTTTAATTGTTCTCGA+AGG - chr5_2:46526110-46526129 None:intergenic 35.0%
TACAGGTATAACAAACTCAC+TGG + chr5_2:46526230-46526249 Msa0772220:intron 35.0%
!! CAAAGTTTTCAGCATTGGAA+TGG + chr5_2:46526267-46526286 Msa0772220:CDS 35.0%
! GCACAGTTTTTCATTAGACA+AGG + chr5_2:46526563-46526582 Msa0772220:CDS 35.0%
AGAGCGATATTATGAGTCTT+TGG + chr5_2:46526690-46526709 Msa0772220:CDS 35.0%
GAGCGATATTATGAGTCTTT+GGG + chr5_2:46526691-46526710 Msa0772220:CDS 35.0%
!! AGTGGATTAATTTGGCTTGT+TGG + chr5_2:46526728-46526747 Msa0772220:CDS 35.0%
!! GTGGATTAATTTGGCTTGTT+GGG + chr5_2:46526729-46526748 Msa0772220:CDS 35.0%
! ATTCGATCTCATTTTCGTCA+AGG + chr5_2:46526789-46526808 Msa0772220:CDS 35.0%
AGCATGAGGATATTTGAAGA+TGG - chr5_2:46526828-46526847 None:intergenic 35.0%
AAATATCCTCATGCTATTGG+AGG + chr5_2:46526833-46526852 Msa0772220:CDS 35.0%
! ACAACAATGGCGATTTTCAT+GGG + chr5_2:46526884-46526903 Msa0772220:CDS 35.0%
CAGAACAAAAGCAAATGCAA+TGG - chr5_2:46526947-46526966 None:intergenic 35.0%
!! CATTGCATTTGCTTTTGTTC+TGG + chr5_2:46526945-46526964 Msa0772220:CDS 35.0%
TCAGGGTTTGGATTCTATTA+CGG + chr5_2:46527085-46527104 Msa0772220:CDS 35.0%
!! AAGAAGGTGCTTTCTCTATA+TGG + chr5_2:46527224-46527243 Msa0772220:CDS 35.0%
CTTTCTCTATATGGTATGCT+TGG + chr5_2:46527233-46527252 Msa0772220:CDS 35.0%
! GGAATTGTTGTGTTGCTATT+TGG + chr5_2:46527355-46527374 Msa0772220:CDS 35.0%
GCATGCAACAGTAGAAAAAA+AGG + chr5_2:46527611-46527630 Msa0772220:three_prime_UTR 35.0%
TGCAACAGTAGAAAAAAAGG+GGG + chr5_2:46527614-46527633 Msa0772220:three_prime_UTR 35.0%
GCATAAAGAAAATGTGTTGG+TGG + chr5_2:46527836-46527855 Msa0772220:three_prime_UTR 35.0%
TAGTGTAGTGAGAGTGAGTA+GGG - chr5_2:46522979-46522998 None:intergenic 40.0%
CAACGGTTACCTCTTTCATT+GGG - chr5_2:46523160-46523179 None:intergenic 40.0%
TCAACGGTTACCTCTTTCAT+TGG - chr5_2:46523161-46523180 None:intergenic 40.0%
! TGAAGCTGACTGATAATGAG+AGG - chr5_2:46523461-46523480 None:intergenic 40.0%
TCTTGAAGTGAAACAGTAGG+TGG - chr5_2:46523488-46523507 None:intergenic 40.0%
GAATGGAACAAAACTCATCC+TGG + chr5_2:46523506-46523525 Msa0772220:CDS 40.0%
!!! GGATTTTTGGCTAGTGAACT+TGG - chr5_2:46523718-46523737 None:intergenic 40.0%
! TAGTAGTGGTTAGCCATGAA+TGG + chr5_2:46523990-46524009 Msa0772220:intron 40.0%
!! CAAAACTGGCCTATTTTGCA+GGG - chr5_2:46524100-46524119 None:intergenic 40.0%
TTTGGTCCCTGCAAAAAATC+TGG - chr5_2:46524889-46524908 None:intergenic 40.0%
TGGTGTGACAAATCCAACAT+AGG + chr5_2:46524973-46524992 Msa0772220:intron 40.0%
GGTGTGACAAATCCAACATA+GGG + chr5_2:46524974-46524993 Msa0772220:intron 40.0%
! ATGAAAAGGCGTGTCCTTTA+TGG + chr5_2:46525075-46525094 Msa0772220:intron 40.0%
CCCTTGAGTAAGAGTAAAGT+TGG - chr5_2:46525113-46525132 None:intergenic 40.0%
AAACCACTTTCATTACCCAC+CGG + chr5_2:46525152-46525171 Msa0772220:intron 40.0%
CAAACACTTGTATACTCCCT+AGG - chr5_2:46525320-46525339 None:intergenic 40.0%
! GGGAGTATACAAGTGTTTGT+CGG + chr5_2:46525321-46525340 Msa0772220:intron 40.0%
! TGTAGTGATAGTGAGCCTAA+CGG + chr5_2:46525604-46525623 Msa0772220:intron 40.0%
CAAGCATATTGCACATGGAA+AGG - chr5_2:46525891-46525910 None:intergenic 40.0%
GATGCTTAATATGAGACCGA+TGG + chr5_2:46526126-46526145 Msa0772220:intron 40.0%
TGGAATGGACATCAATTGCT+TGG + chr5_2:46526282-46526301 Msa0772220:CDS 40.0%
GGAATGGACATCAATTGCTT+GGG + chr5_2:46526283-46526302 Msa0772220:CDS 40.0%
AAGGAAAGGAAGCCAAGAAT+TGG - chr5_2:46526332-46526351 None:intergenic 40.0%
! CTGCAACTGTGATGAGTTTT+GGG - chr5_2:46526373-46526392 None:intergenic 40.0%
ATCTTCATTCCCTACATTGC+CGG + chr5_2:46526449-46526468 Msa0772220:CDS 40.0%
TGCTTTCTTGAGAGTTGTTC+CGG - chr5_2:46526546-46526565 None:intergenic 40.0%
CATCGAGTTCGTGTATCATA+TGG - chr5_2:46526664-46526683 None:intergenic 40.0%
!! TGGGTTGTTTCGATTTTCAG+TGG + chr5_2:46526710-46526729 Msa0772220:CDS 40.0%
CGAAAATGAGATCGAATCAG+TGG - chr5_2:46526786-46526805 None:intergenic 40.0%
CCATTGTTGTGAATGATGCA+AGG - chr5_2:46526874-46526893 None:intergenic 40.0%
CCTTGCATCATTCACAACAA+TGG + chr5_2:46526871-46526890 Msa0772220:CDS 40.0%
! CACAACAATGGCGATTTTCA+TGG + chr5_2:46526883-46526902 Msa0772220:CDS 40.0%
! GGTGGTGTGATTTTCATTGT+TGG + chr5_2:46526905-46526924 Msa0772220:CDS 40.0%
TTGTTGGACAGCTTTGCATT+AGG + chr5_2:46526921-46526940 Msa0772220:CDS 40.0%
AACGAGTGGGAAAAGGAAAT+AGG - chr5_2:46526975-46526994 None:intergenic 40.0%
ACAATGAAACGAGTGGGAAA+AGG - chr5_2:46526982-46527001 None:intergenic 40.0%
! TTTTTCTCGCTTCTGTCTTC+AGG + chr5_2:46527067-46527086 Msa0772220:CDS 40.0%
! TTTTCTCGCTTCTGTCTTCA+GGG + chr5_2:46527068-46527087 Msa0772220:CDS 40.0%
!! GATTTTGCACGCTTTTGGAA+GGG + chr5_2:46527171-46527190 Msa0772220:CDS 40.0%
TTTGGAAACATCAGTGATGC+TGG + chr5_2:46527373-46527392 Msa0772220:CDS 40.0%
GAATCTAAACCAGAAACCAC+CGG - chr5_2:46527448-46527467 None:intergenic 40.0%
! ATGGATTGAGGGATGAATGA+TGG + chr5_2:46527535-46527554 Msa0772220:three_prime_UTR 40.0%
GCAACAGTAGAAAAAAAGGG+GGG + chr5_2:46527615-46527634 Msa0772220:three_prime_UTR 40.0%
CAACAGTAGAAAAAAAGGGG+GGG + chr5_2:46527616-46527635 Msa0772220:three_prime_UTR 40.0%
CTAGTGTAGTGAGAGTGAGT+AGG - chr5_2:46522980-46522999 None:intergenic 45.0%
ACAGTGGTAAGAGAAGAAGG+AGG - chr5_2:46523076-46523095 None:intergenic 45.0%
AGGACAGTGGTAAGAGAAGA+AGG - chr5_2:46523079-46523098 None:intergenic 45.0%
TCGGAATGAGTAATGGTGAG+AGG - chr5_2:46523099-46523118 None:intergenic 45.0%
! GAAAGAAAAAAGGGGGGTGT+CGG - chr5_2:46523118-46523137 None:intergenic 45.0%
GCAGCTTCAGAAGTTGCTAA+AGG + chr5_2:46523251-46523270 Msa0772220:CDS 45.0%
TCAGCTCTGTTGTGTAAGTC+AGG - chr5_2:46523299-46523318 None:intergenic 45.0%
!! GGTATTGGTCCCTGCAAAAT+AGG + chr5_2:46524088-46524107 Msa0772220:intron 45.0%
!! CCAAAACTGGCCTATTTTGC+AGG - chr5_2:46524101-46524120 None:intergenic 45.0%
! CCTGCAAAATAGGCCAGTTT+TGG + chr5_2:46524098-46524117 Msa0772220:intron 45.0%
GCAGGGACTAAAACCAAAAC+TGG - chr5_2:46524114-46524133 None:intergenic 45.0%
!! AAATAGGGTTGATGTCCGGT+GGG - chr5_2:46525170-46525189 None:intergenic 45.0%
!! TAAATAGGGTTGATGTCCGG+TGG - chr5_2:46525171-46525190 None:intergenic 45.0%
ACACTTGTATACTCCCTAGG+AGG - chr5_2:46525317-46525336 None:intergenic 45.0%
TAATATGAGACCGATGGAGC+AGG + chr5_2:46526132-46526151 Msa0772220:intron 45.0%
ACATCAATTGCTTGGGCTAC+AGG + chr5_2:46526290-46526309 Msa0772220:CDS 45.0%
! GCTGCAACTGTGATGAGTTT+TGG - chr5_2:46526374-46526393 None:intergenic 45.0%
! AGGAGTTTTCTTCTGTCTCC+CGG + chr5_2:46526403-46526422 Msa0772220:CDS 45.0%
! TGACTTTGAAGAATCCAGCC+GGG - chr5_2:46526424-46526443 None:intergenic 45.0%
! GTGACTTTGAAGAATCCAGC+CGG - chr5_2:46526425-46526444 None:intergenic 45.0%
GCTGGATTCTTCAAAGTCAC+AGG + chr5_2:46526425-46526444 Msa0772220:CDS 45.0%
! ACAATGGCGATTTTCATGGG+TGG + chr5_2:46526887-46526906 Msa0772220:CDS 45.0%
ATCTTAACCACGCGCAGTAA+AGG - chr5_2:46527016-46527035 None:intergenic 45.0%
TCTATTACGGACACAGTCAC+TGG + chr5_2:46527098-46527117 Msa0772220:CDS 45.0%
CCATTCAGAGCACATCAACA+GGG + chr5_2:46527149-46527168 Msa0772220:CDS 45.0%
! ACAGGGATTTTGCACGCTTT+TGG + chr5_2:46527166-46527185 Msa0772220:CDS 45.0%
! GGATTTTGCACGCTTTTGGA+AGG + chr5_2:46527170-46527189 Msa0772220:CDS 45.0%
GGTGTTAGATTGTGCTCCAT+CGG + chr5_2:46527198-46527217 Msa0772220:CDS 45.0%
GTGTTAGATTGTGCTCCATC+GGG + chr5_2:46527199-46527218 Msa0772220:CDS 45.0%
!! AAAGCACCTTCTTTTCCCGA+TGG - chr5_2:46527217-46527236 None:intergenic 45.0%
! GGTTCACAGTTGGTTCAGTT+GGG + chr5_2:46527281-46527300 Msa0772220:CDS 45.0%
! GCTTTTTGCACTGCTATTGC+TGG + chr5_2:46527334-46527353 Msa0772220:CDS 45.0%
!!! TTTTTATATTTTTTTTAGAT+TGG + chr5_2:46524055-46524074 Msa0772220:intron 5.0%
!! AAAAAAATATTAAAAAATTC+TGG + chr5_2:46524300-46524319 Msa0772220:intron 5.0%
!! ATAAAAAAATTTAAAAATTC+TGG + chr5_2:46524338-46524357 Msa0772220:intron 5.0%
!! ATAAAAAAATTTAAAAATTC+TGG + chr5_2:46524338-46524357 Msa0772220:intron 5.0%
!! AGAAAAAAATATTAAAAATT+CGG + chr5_2:46524501-46524520 Msa0772220:intron 5.0%
!! AAAAAAATATTAAAAAATTC+TGG + chr5_2:46524300-46524319 Msa0772220:intron 5.0%
!!! GAAAAATTTTTTAAAAAATA+CGG - chr5_2:46524660-46524679 None:intergenic 5.0%
!! TAATAAAAATTAAAAAATTC+TGG - chr5_2:46524755-46524774 None:intergenic 5.0%
!! AAAAATTAATTAAAAAATTC+TGG - chr5_2:46524791-46524810 None:intergenic 5.0%
!! ATAAAAAAATTAAAAAATTC+TGG - chr5_2:46524851-46524870 None:intergenic 5.0%
GTAGTGAGAGTGAGTAGGGT+GGG - chr5_2:46522975-46522994 None:intergenic 50.0%
TGTAGTGAGAGTGAGTAGGG+TGG - chr5_2:46522976-46522995 None:intergenic 50.0%
GAGTAATGGTGAGAGGACAG+TGG - chr5_2:46523092-46523111 None:intergenic 50.0%
GAGGTAACCGTTGAAGCTGA+AGG + chr5_2:46523167-46523186 Msa0772220:CDS 50.0%
GTAACCGTTGAAGCTGAAGG+TGG + chr5_2:46523170-46523189 Msa0772220:CDS 50.0%
GACACCACCTTCAGCTTCAA+CGG - chr5_2:46523177-46523196 None:intergenic 50.0%
CATGTCCATGTCCATGTCCA+TGG - chr5_2:46523205-46523224 None:intergenic 50.0%
CATGGACATGGACATGGACA+TGG + chr5_2:46523203-46523222 Msa0772220:CDS 50.0%
CATGGACATGGACATGGTCA+TGG + chr5_2:46523209-46523228 Msa0772220:CDS 50.0%
CATGGACATGGTCATGGTCA+TGG + chr5_2:46523215-46523234 Msa0772220:CDS 50.0%
CATGGTCATGGTCATGGTCA+AGG + chr5_2:46523221-46523240 Msa0772220:CDS 50.0%
!! TTTTGAGAGCAGTGAGTGCC+AGG - chr5_2:46523527-46523546 None:intergenic 50.0%
TGGCACTCACTGCTCTCAAA+AGG + chr5_2:46523526-46523545 Msa0772220:CDS 50.0%
TAGCCATGAATGGAGTGCGA+AGG + chr5_2:46524000-46524019 Msa0772220:intron 50.0%
AGCCATGAATGGAGTGCGAA+GGG + chr5_2:46524001-46524020 Msa0772220:intron 50.0%
AACCCTTCGCACTCCATTCA+TGG - chr5_2:46524006-46524025 None:intergenic 50.0%
TGAATGGAGTGCGAAGGGTT+TGG + chr5_2:46524006-46524025 Msa0772220:intron 50.0%
TGTCCGGTGGGTAATGAAAG+TGG - chr5_2:46525158-46525177 None:intergenic 50.0%
TGATCTATGCTCGCCTCCTA+GGG + chr5_2:46525301-46525320 Msa0772220:intron 50.0%
CGGCACTATACATTGCCGTT+AGG - chr5_2:46525622-46525641 None:intergenic 50.0%
TGTAGGTTCTCCTGCTCCAT+CGG - chr5_2:46526145-46526164 None:intergenic 50.0%
GCCATAGCTGCACCAATTCT+TGG + chr5_2:46526317-46526336 Msa0772220:CDS 50.0%
GCCAAGAATTGGTGCAGCTA+TGG - chr5_2:46526321-46526340 None:intergenic 50.0%
TTCCTTTCCTTCCACCTCGA+CGG + chr5_2:46526341-46526360 Msa0772220:CDS 50.0%
!!! GTTTTGGGAAATTCCCGTCG+AGG - chr5_2:46526358-46526377 None:intergenic 50.0%
CTCATCACAGTTGCAGCAAC+AGG + chr5_2:46526377-46526396 Msa0772220:CDS 50.0%
ACAGTTGCAGCAACAGGTGT+AGG + chr5_2:46526383-46526402 Msa0772220:CDS 50.0%
GCTATGATGCCGGCAATGTA+GGG - chr5_2:46526461-46526480 None:intergenic 50.0%
TGCTATGATGCCGGCAATGT+AGG - chr5_2:46526462-46526481 None:intergenic 50.0%
TGCTGCATTAGCAACTGTGC+TGG - chr5_2:46526486-46526505 None:intergenic 50.0%
CTTGAGAGTTGTTCCGGTGA+AGG - chr5_2:46526540-46526559 None:intergenic 50.0%
ACCACCAAAACAACCAGCAG+CGG - chr5_2:46526618-46526637 None:intergenic 50.0%
GCAAGACCTCCAATAGCATG+AGG - chr5_2:46526842-46526861 None:intergenic 50.0%
GCAGCGACAATGAAACGAGT+GGG - chr5_2:46526988-46527007 None:intergenic 50.0%
AGCAGCGACAATGAAACGAG+TGG - chr5_2:46526989-46527008 None:intergenic 50.0%
GCGCGTGGTTAAGATGAACT+CGG + chr5_2:46527021-46527040 Msa0772220:CDS 50.0%
TCGGTGAAGATGCAGATCGT+TGG + chr5_2:46527040-46527059 Msa0772220:CDS 50.0%
CGGTGAAGATGCAGATCGTT+GGG + chr5_2:46527041-46527060 Msa0772220:CDS 50.0%
TCGCTTCTGTCTTCAGGGTT+TGG + chr5_2:46527073-46527092 Msa0772220:CDS 50.0%
ACGGACACAGTCACTGGAAA+TGG + chr5_2:46527104-46527123 Msa0772220:CDS 50.0%
CGGACACAGTCACTGGAAAT+GGG + chr5_2:46527105-46527124 Msa0772220:CDS 50.0%
GGACACAGTCACTGGAAATG+GGG + chr5_2:46527106-46527125 Msa0772220:CDS 50.0%
TCACTGGAAATGGGGACACT+TGG + chr5_2:46527114-46527133 Msa0772220:CDS 50.0%
GCCATTCAGAGCACATCAAC+AGG + chr5_2:46527148-46527167 Msa0772220:CDS 50.0%
! CCCTGTTGATGTGCTCTGAA+TGG - chr5_2:46527152-46527171 None:intergenic 50.0%
!! GCACGCTTTTGGAAGGGTTT+TGG + chr5_2:46527177-46527196 Msa0772220:CDS 50.0%
TGTGCTCCATCGGGAAAAGA+AGG + chr5_2:46527208-46527227 Msa0772220:CDS 50.0%
TATGCTTGGATGAGAGCTGC+AGG + chr5_2:46527247-46527266 Msa0772220:CDS 50.0%
AGAGCTGCAGGTTTGTGTGT+CGG + chr5_2:46527259-46527278 Msa0772220:CDS 50.0%
TTGTGTGTCGGGTTCACAGT+TGG + chr5_2:46527271-46527290 Msa0772220:CDS 50.0%
! GGGTTCACAGTTGGTTCAGT+TGG + chr5_2:46527280-46527299 Msa0772220:CDS 50.0%
AACGAAGTCCTAATCCGTCC+TGG - chr5_2:46527307-46527326 None:intergenic 50.0%
!! GGACGGATTAGGACTTCGTT+CGG + chr5_2:46527307-46527326 Msa0772220:CDS 50.0%
GGAAACATCAGTGATGCTGG+TGG + chr5_2:46527376-46527395 Msa0772220:CDS 50.0%
CGATAACGAGAGAAGCTCTC+CGG + chr5_2:46527426-46527445 Msa0772220:CDS 50.0%
! GAGGGATGAATGATGGTGCA+TGG + chr5_2:46527542-46527561 Msa0772220:three_prime_UTR 50.0%
!! GGGGGTGTCGGAATGAGTAA+TGG - chr5_2:46523106-46523125 None:intergenic 55.0%
GAAGCTGAAGGTGGTGTCCT+TGG + chr5_2:46523179-46523198 Msa0772220:CDS 55.0%
CATGTCCATGTCCATGGCCA+AGG - chr5_2:46523199-46523218 None:intergenic 55.0%
CTTGGCCATGGACATGGACA+TGG + chr5_2:46523197-46523216 Msa0772220:CDS 55.0%
GGTCATGGTCATGGTCAAGG+TGG + chr5_2:46523224-46523243 Msa0772220:CDS 55.0%
GTGATCTATGCTCGCCTCCT+AGG + chr5_2:46525300-46525319 Msa0772220:intron 55.0%
TCCTTTCCTTCCACCTCGAC+GGG + chr5_2:46526342-46526361 Msa0772220:CDS 55.0%
GAAATTCCCGTCGAGGTGGA+AGG - chr5_2:46526351-46526370 None:intergenic 55.0%
TTGGGAAATTCCCGTCGAGG+TGG - chr5_2:46526355-46526374 None:intergenic 55.0%
! GTTTTCTTCTGTCTCCCGGC+TGG + chr5_2:46526407-46526426 Msa0772220:CDS 55.0%
!! TGTGCTGGCTGCTATGATGC+CGG - chr5_2:46526471-46526490 None:intergenic 55.0%
GCAGCACACACACAGCATCT+CGG + chr5_2:46526500-46526519 Msa0772220:CDS 55.0%
GGTAGCATGAAGCGAGAGAC+GGG - chr5_2:46526597-46526616 None:intergenic 55.0%
CGGTAGCATGAAGCGAGAGA+CGG - chr5_2:46526598-46526617 None:intergenic 55.0%
!! GCTACCGCTGCTGGTTGTTT+TGG + chr5_2:46526611-46526630 Msa0772220:CDS 55.0%
!!! ACCGCTGCTGGTTGTTTTGG+TGG + chr5_2:46526614-46526633 Msa0772220:CDS 55.0%
GCTACAACCTTTACTGCGCG+TGG + chr5_2:46527006-46527025 Msa0772220:CDS 55.0%
GAGCTGCAGGTTTGTGTGTC+GGG + chr5_2:46527260-46527279 Msa0772220:CDS 55.0%
! ACAGTTGGTTCAGTTGGGCC+AGG + chr5_2:46527286-46527305 Msa0772220:CDS 55.0%
TTGGTTCAGTTGGGCCAGGA+CGG + chr5_2:46527290-46527309 Msa0772220:CDS 55.0%
TAACGAGAGAAGCTCTCCGG+TGG + chr5_2:46527429-46527448 Msa0772220:CDS 55.0%
AGAAGCTCTCCGGTGGTTTC+TGG + chr5_2:46527436-46527455 Msa0772220:CDS 55.0%
GAAGGTGGTGTCCTTGGCCA+TGG + chr5_2:46523185-46523204 Msa0772220:CDS 60.0%
GGTGTCCTTGGCCATGGACA+TGG + chr5_2:46523191-46523210 Msa0772220:CDS 60.0%
TCCCGTCGAGGTGGAAGGAA+AGG - chr5_2:46526346-46526365 None:intergenic 60.0%
CTCATGATCCGCGCCTTCAC+CGG + chr5_2:46526524-46526543 Msa0772220:CDS 60.0%
GAGTTGTTCCGGTGAAGGCG+CGG - chr5_2:46526535-46526554 None:intergenic 60.0%
TCGCTTCATGCTACCGCTGC+TGG + chr5_2:46526602-46526621 Msa0772220:CDS 60.0%
! CAGTTGGGCCAGGACGGATT+AGG + chr5_2:46527296-46527315 Msa0772220:CDS 60.0%
!! CTGGTGGTGCTGTTGCTGCA+GGG + chr5_2:46527392-46527411 Msa0772220:CDS 60.0%
! CGGTGAAGGCGCGGATCATG+AGG - chr5_2:46526526-46526545 None:intergenic 65.0%
!! GCTGGTGGTGCTGTTGCTGC+AGG + chr5_2:46527391-46527410 Msa0772220:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 46522972 46527865 46522972 ID=Msa0772220;Name=Msa0772220
chr5_2 mRNA 46522972 46527865 46522972 ID=Msa0772220-mRNA-1;Parent=Msa0772220;Name=Msa0772220-mRNA-1;_AED=0.01;_eAED=0.01;_QI=189|1|1|1|1|1|2|376|550
chr5_2 exon 46522972 46523558 46522972 ID=Msa0772220-mRNA-1:exon:13894;Parent=Msa0772220-mRNA-1
chr5_2 exon 46526235 46527865 46526235 ID=Msa0772220-mRNA-1:exon:13895;Parent=Msa0772220-mRNA-1
chr5_2 five_prime_UTR 46522972 46523160 46522972 ID=Msa0772220-mRNA-1:five_prime_utr;Parent=Msa0772220-mRNA-1
chr5_2 CDS 46523161 46523558 46523161 ID=Msa0772220-mRNA-1:cds;Parent=Msa0772220-mRNA-1
chr5_2 CDS 46526235 46527489 46526235 ID=Msa0772220-mRNA-1:cds;Parent=Msa0772220-mRNA-1
chr5_2 three_prime_UTR 46527490 46527865 46527490 ID=Msa0772220-mRNA-1:three_prime_utr;Parent=Msa0772220-mRNA-1
Gene Sequence

>Msa0772220

ATGAAAGAGGTAACCGTTGAAGCTGAAGGTGGTGTCCTTGGCCATGGACATGGACATGGACATGGTCATGGTCATGGTCAAGGTGGTGTAGCAGCTTCAGAAGTTGCTAAAGGTAACAACAACAATACTACTAGACCTGACTTACACAACAGAGCTGAGAAAATATTGAGAGCTAGAGAAGCTTATAATGGTTATGAAGAAGTTGGTGAAAAACCTTCTAGATTTGAAACTTTTGGTTGGTATCTTTATGAGTTTTGCTTCTACTTTGTTCAAACTGTGCTTGTTCCTGTTGTCTTTCCTCTCATTATCAGTCAGCTTCAAAGTCCACCTACTGTTTCACTTCAAGAATGGAACAAAACTCATCCTGGCACTCACTGCTCTCAAAAGGAATTTCATTTGTATAACAAACTCACTGGACACACCATAAGTTCAAAGTTTTCAGCATTGGAATGGACATCAATTGCTTGGGCTACAGGTCTAGCCATAGCTGCACCAATTCTTGGCTTCCTTTCCTTCCACCTCGACGGGAATTTCCCAAAACTCATCACAGTTGCAGCAACAGGTGTAGGAGTTTTCTTCTGTCTCCCGGCTGGATTCTTCAAAGTCACAGGCATCTTCATTCCCTACATTGCCGGCATCATAGCAGCCAGCACAGTTGCTAATGCAGCACACACACAGCATCTCGGCCTCATGATCCGCGCCTTCACCGGAACAACTCTCAAGAAAGCACAGTTTTTCATTAGACAAGGTGTTTCATCCCGTCTCTCGCTTCATGCTACCGCTGCTGGTTGTTTTGGTGGTGCTTTGATTTCAGCTTTCACTTACCATATGATACACGAACTCGATGAAAATAAGAGCGATATTATGAGTCTTTGGGTTGTTTCGATTTTCAGTGGATTAATTTGGCTTGTTGGGATCTTGCATTTAGCTACAGCTACAAGTAGAACCACTGATTCGATCTCATTTTCGTCAAGGCTGCACCCTTTTTCCATCTTCAAATATCCTCATGCTATTGGAGGTCTTGCTAGTGTTTTCCTTGCATCATTCACAACAATGGCGATTTTCATGGGTGGTGTGATTTTCATTGTTGGACAGCTTTGCATTAGGCCATTGCATTTGCTTTTGTTCTGGTTAACCTATTTCCTTTTCCCACTCGTTTCATTGTCGCTGCTACAACCTTTACTGCGCGTGGTTAAGATGAACTCGGTGAAGATGCAGATCGTTGGGTTCTTTTTCTCGCTTCTGTCTTCAGGGTTTGGATTCTATTACGGACACAGTCACTGGAAATGGGGACACTTGGTTCTTTTCGCTGCCATTCAGAGCACATCAACAGGGATTTTGCACGCTTTTGGAAGGGTTTTGGTGTTAGATTGTGCTCCATCGGGAAAAGAAGGTGCTTTCTCTATATGGTATGCTTGGATGAGAGCTGCAGGTTTGTGTGTCGGGTTCACAGTTGGTTCAGTTGGGCCAGGACGGATTAGGACTTCGTTCGGAGTTGCTTTTTGCACTGCTATTGCTGGAATTGTTGTGTTGCTATTTGGAAACATCAGTGATGCTGGTGGTGCTGTTGCTGCAGGGATTGTAAGTGACGATAACGAGAGAAGCTCTCCGGTGGTTTCTGGTTTAGATTCGAAAGAAGCTGCTCGAGTTTGA
Protein sequence

>Msa0772220

MKEVTVEAEGGVLGHGHGHGHGHGHGQGGVAASEVAKGNNNNTTRPDLHNRAEKILRAREAYNGYEEVGEKPSRFETFGWYLYEFCFYFVQTVLVPVVFPLIISQLQSPPTVSLQEWNKTHPGTHCSQKEFHLYNKLTGHTISSKFSALEWTSIAWATGLAIAAPILGFLSFHLDGNFPKLITVAATGVGVFFCLPAGFFKVTGIFIPYIAGIIAASTVANAAHTQHLGLMIRAFTGTTLKKAQFFIRQGVSSRLSLHATAAGCFGGALISAFTYHMIHELDENKSDIMSLWVVSIFSGLIWLVGILHLATATSRTTDSISFSSRLHPFSIFKYPHAIGGLASVFLASFTTMAIFMGGVIFIVGQLCIRPLHLLLFWLTYFLFPLVSLSLLQPLLRVVKMNSVKMQIVGFFFSLLSSGFGFYYGHSHWKWGHLVLFAAIQSTSTGILHAFGRVLVLDCAPSGKEGAFSIWYAWMRAAGLCVGFTVGSVGPGRIRTSFGVAFCTAIAGIVVLLFGNISDAGGAVAAGIVSDDNERSSPVVSGLDSKEAARV*