Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561630 | XP_003608503.1 | 93.801 | 742 | 39 | 4 | 1 | 740 | 1 | 737 | 0.0 | 1154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561630 | sp|O74828|ESF1_SCHPO | 32.836 | 737 | 387 | 25 | 33 | 717 | 2 | 682 | 4.69e-72 | 251 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561630 | G7JDZ9 | 93.801 | 742 | 39 | 4 | 1 | 740 | 1 | 737 | 0.0 | 1154 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003720 | Msa0561630 | 0.809074 | 2.264370e-50 | -8.615850e-47 |
| Msa0032430 | Msa0561630 | 0.801012 | 1.100477e-48 | -8.615850e-47 |
| Msa0054440 | Msa0561630 | 0.810939 | 8.983618e-51 | -8.615850e-47 |
| Msa0054480 | Msa0561630 | 0.823820 | 1.127069e-53 | -8.615850e-47 |
| Msa0070700 | Msa0561630 | 0.812814 | 3.508522e-51 | -8.615850e-47 |
| Msa0079380 | Msa0561630 | 0.808217 | 3.452561e-50 | -8.615850e-47 |
| Msa0115400 | Msa0561630 | 0.801605 | 8.322726e-49 | -8.615850e-47 |
| Msa0118590 | Msa0561630 | 0.809751 | 1.620464e-50 | -8.615850e-47 |
| Msa0144370 | Msa0561630 | 0.813476 | 2.511172e-51 | -8.615850e-47 |
| Msa0187120 | Msa0561630 | 0.806161 | 9.407683e-50 | -8.615850e-47 |
| Msa0189300 | Msa0561630 | 0.827643 | 1.397079e-54 | -8.615850e-47 |
| Msa0229170 | Msa0561630 | 0.827278 | 1.708960e-54 | -8.615850e-47 |
| Msa0231660 | Msa0561630 | 0.808475 | 3.041832e-50 | -8.615850e-47 |
| Msa0481530 | Msa0561630 | 0.807969 | 3.898727e-50 | -8.615850e-47 |
| Msa0482130 | Msa0561630 | 0.813327 | 2.708022e-51 | -8.615850e-47 |
| Msa0271530 | Msa0561630 | 0.823553 | 1.301630e-53 | -8.615850e-47 |
| Msa0279220 | Msa0561630 | 0.802303 | 5.980797e-49 | -8.615850e-47 |
| Msa0279240 | Msa0561630 | 0.816200 | 6.251113e-52 | -8.615850e-47 |
| Msa0309750 | Msa0561630 | 0.802829 | 4.659312e-49 | -8.615850e-47 |
| Msa0318980 | Msa0561630 | 0.813201 | 2.886135e-51 | -8.615850e-47 |
| Msa0357900 | Msa0561630 | 0.811591 | 6.484881e-51 | -8.615850e-47 |
| Msa0529890 | Msa0561630 | 0.806782 | 6.960160e-50 | -8.615850e-47 |
| Msa0542090 | Msa0561630 | 0.844117 | 9.221080e-59 | -8.615850e-47 |
| Msa0542130 | Msa0561630 | 0.844534 | 7.124621e-59 | -8.615850e-47 |
| Msa0554290 | Msa0561630 | 0.812374 | 4.379110e-51 | -8.615850e-47 |
| Msa0554920 | Msa0561630 | 0.807194 | 5.692528e-50 | -8.615850e-47 |
| Msa0561630 | Msa0581280 | 0.809701 | 1.661023e-50 | -8.615850e-47 |
| Msa0561630 | Msa0585560 | 0.809763 | 1.611230e-50 | -8.615850e-47 |
| Msa0561630 | Msa0601150 | 0.850287 | 1.871659e-60 | -8.615850e-47 |
| Msa0561630 | Msa0608500 | 0.817933 | 2.550283e-52 | -8.615850e-47 |
| Msa0561630 | Msa0617640 | 0.809587 | 1.758176e-50 | -8.615850e-47 |
| Msa0561630 | Msa0625720 | 0.804460 | 2.137562e-49 | -8.615850e-47 |
| Msa0561630 | Msa0663390 | 0.807735 | 4.372535e-50 | -8.615850e-47 |
| Msa0561630 | Msa0685140 | 0.828549 | 8.449938e-55 | -8.615850e-47 |
| Msa0561630 | Msa0689260 | 0.853199 | 2.797949e-61 | -8.615850e-47 |
| Msa0561630 | Msa0691290 | 0.825875 | 3.692773e-54 | -8.615850e-47 |
| Msa0561630 | Msa0691530 | 0.801759 | 7.739355e-49 | -8.615850e-47 |
| Msa0561630 | Msa0698800 | 0.874269 | 7.707177e-68 | -8.615850e-47 |
| Msa0561630 | Msa0711780 | 0.824913 | 6.237558e-54 | -8.615850e-47 |
| Msa0561630 | Msa0788850 | 0.815127 | 1.083876e-51 | -8.615850e-47 |
| Msa0561630 | Msa0793800 | 0.802171 | 6.368220e-49 | -8.615850e-47 |
| Msa0561630 | Msa0794670 | 0.815975 | 7.018486e-52 | -8.615850e-47 |
| Msa0561630 | Msa0830540 | 0.807653 | 4.551180e-50 | -8.615850e-47 |
| Msa0561630 | Msa0831530 | 0.812545 | 4.017021e-51 | -8.615850e-47 |
| Msa0561630 | Msa0909950 | 0.804248 | 2.366518e-49 | -8.615850e-47 |
| Msa0561630 | Msa0945440 | 0.833098 | 6.480082e-56 | -8.615850e-47 |
| Msa0561630 | Msa0989540 | 0.824016 | 1.013888e-53 | -8.615850e-47 |
| Msa0561630 | Msa1160590 | 0.801903 | 7.228561e-49 | -8.615850e-47 |
| Msa0561630 | Msa1181250 | 0.824080 | 9.795086e-54 | -8.615850e-47 |
| Msa0561630 | Msa1181330 | 0.818361 | 2.040859e-52 | -8.615850e-47 |
| Msa0561630 | Msa1181910 | 0.822089 | 2.853880e-53 | -8.615850e-47 |
| Msa0561630 | Msa1208880 | 0.827104 | 1.880915e-54 | -8.615850e-47 |
| Msa0561630 | Msa1209200 | 0.816003 | 6.918986e-52 | -8.615850e-47 |
| Msa0561630 | Msa1245930 | 0.842378 | 2.682019e-58 | -8.615850e-47 |
| Msa0561630 | Msa1259060 | 0.840097 | 1.067292e-57 | -8.615850e-47 |
| Msa0561630 | Msa1358250 | 0.851052 | 1.140954e-60 | -8.615850e-47 |
| Msa0561630 | Msa1382560 | 0.818697 | 1.711845e-52 | -8.615850e-47 |
| Msa0561630 | Msa1392780 | 0.845916 | 3.011862e-59 | -8.615850e-47 |
| Msa0561630 | Msa1394290 | 0.812226 | 4.717328e-51 | -8.615850e-47 |
| Msa0561630 | Msa1400580 | 0.834529 | 2.844178e-56 | -8.615850e-47 |
| Msa0561630 | Msa1423350 | 0.805363 | 1.383839e-49 | -8.615850e-47 |
| Msa0561630 | Msa1457920 | 0.838151 | 3.409487e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561630 | MtrunA17_Chr4g0052231 | 93.801 | 742 | 39 | 4 | 1 | 740 | 1 | 737 | 0.0 | 1154 |
| Msa0561630 | MtrunA17_Chr4g0037051 | 61.429 | 210 | 61 | 3 | 202 | 411 | 143 | 332 | 1.67e-81 | 265 |
| Msa0561630 | MtrunA17_Chr4g0037061 | 46.154 | 377 | 132 | 19 | 409 | 740 | 12 | 362 | 3.57e-59 | 204 |
| Msa0561630 | MtrunA17_Chr3g0137811 | 52.632 | 133 | 48 | 6 | 609 | 736 | 8 | 130 | 8.45e-26 | 103 |
| Msa0561630 | MtrunA17_Chr3g0137801 | 57.031 | 128 | 42 | 7 | 446 | 569 | 2 | 120 | 1.18e-20 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561630 | AT3G01160.1 | 47.684 | 734 | 315 | 21 | 21 | 731 | 4 | 691 | 6.04e-167 | 498 |
Find 179 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCTTTGTTTGATGCTTT+GGG | 0.189744 | 4_1:+61182149 | None:intergenic |
| TCTTCGTCATTACTATAAAA+TGG | 0.210954 | 4_1:-61182014 | Msa0561630:CDS |
| GCAATCTTTGTTTGATGCTT+TGG | 0.233794 | 4_1:+61182148 | None:intergenic |
| TTCTTCTTCTTCTTAATATC+AGG | 0.236398 | 4_1:+61179322 | None:intergenic |
| GAAATCAAAGCAAGATAAAT+TGG | 0.239661 | 4_1:-61178490 | Msa0561630:CDS |
| GAACTCCGGCGGTGTGTTTC+CGG | 0.247725 | 4_1:+61182381 | None:intergenic |
| CTGCTTCTGTGCCAGCTGCC+TGG | 0.262136 | 4_1:+61178635 | None:intergenic |
| TAAATTGGAGTTATCATCTT+TGG | 0.267442 | 4_1:-61178475 | Msa0561630:CDS |
| AGATATAAGCAAACATATTA+TGG | 0.278395 | 4_1:-61179524 | Msa0561630:CDS |
| CTGCGAATTAGCCTTATCTT+TGG | 0.280384 | 4_1:+61182045 | None:intergenic |
| ATAAACTATACCTGAATTTC+AGG | 0.285468 | 4_1:+61181749 | None:intergenic |
| CCACCGATCCACAATTTAAA+AGG | 0.293286 | 4_1:-61179039 | Msa0561630:intron |
| AAGCTCTTCTTTGCTTGCTT+TGG | 0.294428 | 4_1:+61179240 | None:intergenic |
| ACTATTTATCCAACCGAGTT+TGG | 0.299625 | 4_1:-61181251 | Msa0561630:CDS |
| TAGGCTGGCTGTTGTTAATA+TGG | 0.299951 | 4_1:-61181458 | Msa0561630:CDS |
| ATGAATGAGGAGGAAGTTAA+AGG | 0.319405 | 4_1:-61181218 | Msa0561630:CDS |
| GAAGACAATTGTGTTTCTTT+CGG | 0.328663 | 4_1:+61178564 | None:intergenic |
| CATCGAATCCACTTGACTTA+AGG | 0.335239 | 4_1:-61180438 | Msa0561630:CDS |
| TCTTTGTTCTCGTAGTTTGC+AGG | 0.342246 | 4_1:+61180282 | None:intergenic |
| TTTATCAGACTTCTTCGAAT+TGG | 0.349081 | 4_1:+61182252 | None:intergenic |
| TGCGAATTAGCCTTATCTTT+GGG | 0.350288 | 4_1:+61182046 | None:intergenic |
| CATCGCAATGGGATCCAAAA+AGG | 0.357185 | 4_1:-61182350 | Msa0561630:exon |
| TGGCTACCCCATCCATATCT+TGG | 0.367484 | 4_1:+61179260 | None:intergenic |
| AAGGAGAAGGGTGGGGAAGA+AGG | 0.368948 | 4_1:-61178525 | Msa0561630:CDS |
| GCGAAACCGGAGATTGATAA+TGG | 0.375886 | 4_1:-61181896 | Msa0561630:CDS |
| AGATCATAAGCTCCAAGATA+TGG | 0.384646 | 4_1:-61179272 | Msa0561630:CDS |
| GGATCATCAAATGCATTGTT+TGG | 0.388107 | 4_1:+61179103 | None:intergenic |
| AGATGATGATGCCATGGATA+TGG | 0.388730 | 4_1:-61179572 | Msa0561630:CDS |
| ACAGTAAAGTTGAACTTACT+TGG | 0.391491 | 4_1:-61180236 | Msa0561630:CDS |
| AGAGGATGAACCTGAAATTC+AGG | 0.394746 | 4_1:-61181759 | Msa0561630:intron |
| AAGGTTTATTCCAGACGATA+TGG | 0.401282 | 4_1:-61180419 | Msa0561630:CDS |
| AGCAGGCATGTGGTTGGTAT+TGG | 0.402016 | 4_1:-61178255 | Msa0561630:three_prime_UTR |
| GGATAATGATGATGAATTAG+AGG | 0.406042 | 4_1:-61181939 | Msa0561630:CDS |
| ATCTTGCAAACCTGTATTGA+AGG | 0.406255 | 4_1:+61179543 | None:intergenic |
| CGCCGTGTATGCCAGGCAGC+TGG | 0.411298 | 4_1:-61178646 | Msa0561630:CDS |
| AGGAGAAGGGTGGGGAAGAA+GGG | 0.411300 | 4_1:-61178524 | Msa0561630:CDS |
| TCACCATCAAATAGAGCAAC+AGG | 0.414563 | 4_1:+61181194 | None:intergenic |
| CCTCCTCATTCATACGTTGA+AGG | 0.416581 | 4_1:+61181228 | None:intergenic |
| ATTTATACAGAACTTCTCAT+TGG | 0.417011 | 4_1:-61178075 | Msa0561630:three_prime_UTR |
| GGGCCTGTTGCTCTATTTGA+TGG | 0.419143 | 4_1:-61181197 | Msa0561630:CDS |
| CAATTGTCTTCTGATGGTTC+TGG | 0.419907 | 4_1:-61178552 | Msa0561630:CDS |
| TATTGACATCAGAGGATAGC+TGG | 0.422896 | 4_1:+61178421 | None:intergenic |
| AGTTCATTAGCCCCACCTAA+TGG | 0.423520 | 4_1:-61181290 | Msa0561630:CDS |
| TCTTTGTCATTACTGTGTAA+TGG | 0.425826 | 4_1:+61182229 | None:intergenic |
| TTCCATTCAAGTGAGTAGAT+TGG | 0.427627 | 4_1:+61178338 | None:intergenic |
| ACCGATTTGACCAGTCCATT+AGG | 0.435915 | 4_1:+61181275 | None:intergenic |
| CAAACATATTATGGAAAAGA+AGG | 0.449002 | 4_1:-61179515 | Msa0561630:CDS |
| ACCTCTGATGCAACATCCTT+AGG | 0.449293 | 4_1:+61180382 | None:intergenic |
| GCAGGAGCGCCGTGTATGCC+AGG | 0.451654 | 4_1:-61178653 | Msa0561630:intron |
| GAAAATCACAATTTAAGAAA+AGG | 0.454669 | 4_1:-61178386 | Msa0561630:CDS |
| GAAAGTTAAGAATGCGAAAC+CGG | 0.457632 | 4_1:-61181909 | Msa0561630:CDS |
| AAGTTGGAATTCATTCCAAA+AGG | 0.458068 | 4_1:-61177996 | Msa0561630:three_prime_UTR |
| ACCTAATGGACTGGTCAAAT+CGG | 0.462020 | 4_1:-61181276 | Msa0561630:CDS |
| GTCTGAAGAGAGCGATGATT+CGG | 0.467370 | 4_1:-61181867 | Msa0561630:CDS |
| TTCGTCGTCGGCATCGCAAT+GGG | 0.468489 | 4_1:-61182361 | Msa0561630:exon |
| AGTTGGAATTCATTCCAAAA+GGG | 0.468556 | 4_1:-61177995 | Msa0561630:three_prime_UTR |
| GATGACAAGGGGACAGGTAC+TGG | 0.470311 | 4_1:-61179202 | Msa0561630:CDS |
| AGAACCACGACGACAACAAA+GGG | 0.472013 | 4_1:-61182318 | Msa0561630:CDS |
| TCAGTTCCATTATCAATCTC+CGG | 0.476957 | 4_1:+61181890 | None:intergenic |
| GTGAAGAATTATCAGTAGAA+AGG | 0.480256 | 4_1:-61178602 | Msa0561630:CDS |
| GAACAAAGATTTCTATTCTC+GGG | 0.481122 | 4_1:-61180268 | Msa0561630:CDS |
| AGAACAAAGATTTCTATTCT+CGG | 0.483286 | 4_1:-61180269 | Msa0561630:CDS |
| CTGGTATGAAGGAGAAGGGT+GGG | 0.492784 | 4_1:-61178533 | Msa0561630:CDS |
| TTCTGATGGTTCTGGTATGA+AGG | 0.495916 | 4_1:-61178544 | Msa0561630:CDS |
| ATGGAGGTGACCTTCAATAC+AGG | 0.496342 | 4_1:-61179553 | Msa0561630:CDS |
| AGGCTTAGAACACAATGGTT+AGG | 0.497747 | 4_1:+61178040 | None:intergenic |
| GCTGGCACAGAAGCAGCAGA+AGG | 0.499989 | 4_1:-61178628 | Msa0561630:CDS |
| GGGTTTACCTCGCTTATCGA+CGG | 0.500012 | 4_1:+61182066 | None:intergenic |
| GAAGAACAATGGCAAGGGTA+AGG | 0.500977 | 4_1:-61182284 | Msa0561630:CDS |
| TGCCAGCTGCCTGGCATACA+CGG | 0.501362 | 4_1:+61178644 | None:intergenic |
| ATAGCTGGCTCAGTTGGAAA+TGG | 0.501819 | 4_1:-61179722 | Msa0561630:intron |
| ATTGTGATAGCTGGCTCAGT+TGG | 0.502360 | 4_1:-61179728 | Msa0561630:intron |
| GATGTCAATACAAAGAAAGC+TGG | 0.502558 | 4_1:-61178408 | Msa0561630:CDS |
| TGTTTGAATTCCATATCGTC+TGG | 0.504264 | 4_1:+61180409 | None:intergenic |
| GCGATGCCGACGACGAACTC+CGG | 0.504422 | 4_1:+61182367 | None:intergenic |
| GAAACACAATTGTCTTCTGA+TGG | 0.505036 | 4_1:-61178558 | Msa0561630:CDS |
| TGAAGAATTATCAGTAGAAA+GGG | 0.505273 | 4_1:-61178601 | Msa0561630:CDS |
| TGAATGAGGAGGAAGTTAAA+GGG | 0.505616 | 4_1:-61181217 | Msa0561630:CDS |
| GAGACCTTGTGAAATTGTTA+CGG | 0.506522 | 4_1:-61178315 | Msa0561630:three_prime_UTR |
| GGGGACAGGTACTGGTCTCA+AGG | 0.508304 | 4_1:-61179194 | Msa0561630:CDS |
| GAAGGAGCTGCTGAAGTTTG+TGG | 0.508723 | 4_1:+61182446 | None:intergenic |
| GCGGAAATTCACTGACGAGC+AGG | 0.510238 | 4_1:-61180178 | Msa0561630:intron |
| GTCCAATCTACTCACTTGAA+TGG | 0.511568 | 4_1:-61178340 | Msa0561630:three_prime_UTR |
| GGTTTACCTCGCTTATCGAC+GGG | 0.511757 | 4_1:+61182067 | None:intergenic |
| GTTCGTCGTCGGCATCGCAA+TGG | 0.511959 | 4_1:-61182362 | Msa0561630:exon |
| AATCTTTGTTTGATGCTTTG+GGG | 0.517406 | 4_1:+61182150 | None:intergenic |
| GACAATAATTCAGATGAAGA+TGG | 0.518699 | 4_1:-61179595 | Msa0561630:CDS |
| TGATTCGGAGGCTGATGCTA+TGG | 0.518731 | 4_1:-61181852 | Msa0561630:CDS |
| AAGTGATGAAGACGATAGTG+AGG | 0.522461 | 4_1:-61181162 | Msa0561630:CDS |
| GCGAGGTAAACCCAAAGATA+AGG | 0.522552 | 4_1:-61182056 | Msa0561630:CDS |
| TTATCGACGGGTGCAGAAGA+AGG | 0.525290 | 4_1:+61182079 | None:intergenic |
| AGAGAGAACGGCAAAGGTGA+AGG | 0.525755 | 4_1:+61182428 | None:intergenic |
| ATCTGAATTATTGTCAAGCA+AGG | 0.527250 | 4_1:+61179603 | None:intergenic |
| TGCGTGCATATGAAAAGAGC+AGG | 0.528143 | 4_1:-61181085 | Msa0561630:CDS |
| AACCATTGTGTTCTAAGCCT+CGG | 0.529208 | 4_1:-61178037 | Msa0561630:three_prime_UTR |
| GGAATAAACCTTAAGTCAAG+TGG | 0.531217 | 4_1:+61180430 | None:intergenic |
| CACATTTACAAAGAAAATGA+TGG | 0.532366 | 4_1:-61180478 | Msa0561630:CDS |
| AGATTGAGAAAGAAACTCAT+AGG | 0.533078 | 4_1:-61181477 | Msa0561630:CDS |
| CGAAGATCCTCGATTTGCCA+TGG | 0.535647 | 4_1:-61182200 | Msa0561630:CDS |
| TATATATAACTTCTCGTAGG+TGG | 0.536816 | 4_1:-61178120 | Msa0561630:three_prime_UTR |
| TTTGTAAATGTGATCTGCTG+TGG | 0.536863 | 4_1:+61180489 | None:intergenic |
| TCCTAAGGATGTTGCATCAG+AGG | 0.537358 | 4_1:-61180383 | Msa0561630:intron |
| AGTTGAACTTACTTGGGATG+AGG | 0.538968 | 4_1:-61180229 | Msa0561630:CDS |
| CTTGCTGATGACAAGGGGAC+AGG | 0.541409 | 4_1:-61179208 | Msa0561630:CDS |
| CGTTGAAGGCCAAACTCGGT+TGG | 0.544452 | 4_1:+61181242 | None:intergenic |
| AGAACAGAGTAGTGATGAGG+AGG | 0.546273 | 4_1:-61181960 | Msa0561630:CDS |
| TTCGAGCAAATACTTTGAAG+CGG | 0.548379 | 4_1:-61180197 | Msa0561630:CDS |
| ATAAGCTCCAAGATATGGAT+GGG | 0.550287 | 4_1:-61179267 | Msa0561630:CDS |
| GGAATTCAAACAGCCTCCTA+AGG | 0.550469 | 4_1:-61180398 | Msa0561630:CDS |
| CATAAGCTCCAAGATATGGA+TGG | 0.551085 | 4_1:-61179268 | Msa0561630:CDS |
| TTCAAAGTATTTGCTCGAAG+AGG | 0.553042 | 4_1:+61180201 | None:intergenic |
| TGGCCTTCAACGTATGAATG+AGG | 0.554948 | 4_1:-61181231 | Msa0561630:CDS |
| AAGAACCACGACGACAACAA+AGG | 0.555045 | 4_1:-61182319 | Msa0561630:CDS |
| CAAAGATAAGGCTAATTCGC+AGG | 0.556367 | 4_1:-61182044 | Msa0561630:CDS |
| GCGGAGAATGCTATTGATGA+GGG | 0.557091 | 4_1:-61179133 | Msa0561630:CDS |
| AGTAGAACAGAGTAGTGATG+AGG | 0.560231 | 4_1:-61181963 | Msa0561630:CDS |
| TGGTATGAAGGAGAAGGGTG+GGG | 0.563117 | 4_1:-61178532 | Msa0561630:CDS |
| CAGTAAAGTTGAACTTACTT+GGG | 0.565191 | 4_1:-61180235 | Msa0561630:CDS |
| ATCTTTGTTTGATGCTTTGG+GGG | 0.565921 | 4_1:+61182151 | None:intergenic |
| ATTTGACCAGTCCATTAGGT+GGG | 0.566867 | 4_1:+61181279 | None:intergenic |
| CTGGCACAGAAGCAGCAGAA+GGG | 0.567081 | 4_1:-61178627 | Msa0561630:CDS |
| TGGCTGTTGTTAATATGGAC+TGG | 0.567725 | 4_1:-61181453 | Msa0561630:CDS |
| TGAGAAAGAAACTCATAGGC+TGG | 0.567983 | 4_1:-61181473 | Msa0561630:CDS |
| TTACGGCCCCTTCCACATGC+CGG | 0.569934 | 4_1:-61178298 | Msa0561630:three_prime_UTR |
| GGGACAGGTACTGGTCTCAA+GGG | 0.570096 | 4_1:-61179193 | Msa0561630:CDS |
| TCTTCCCTTTGTTGTCGTCG+TGG | 0.570184 | 4_1:+61182314 | None:intergenic |
| GGTTGGTATTGGATCTATTG+AGG | 0.571098 | 4_1:-61178244 | Msa0561630:three_prime_UTR |
| TGTTTCAGAGAGAACGGCAA+AGG | 0.573583 | 4_1:+61182422 | None:intergenic |
| CATACGTTGAAGGCCAAACT+CGG | 0.576188 | 4_1:+61181238 | None:intergenic |
| ACTGCTTGTTTCAGAGAGAA+CGG | 0.576342 | 4_1:+61182416 | None:intergenic |
| ATCATGAAAATCTTCTTCAT+CGG | 0.577014 | 4_1:+61181130 | None:intergenic |
| GGTTCTGGTATGAAGGAGAA+GGG | 0.577877 | 4_1:-61178537 | Msa0561630:CDS |
| ATTAGCCCCACCTAATGGAC+TGG | 0.582985 | 4_1:-61181285 | Msa0561630:CDS |
| TTTCTTTGTATTGACATCAG+AGG | 0.587167 | 4_1:+61178413 | None:intergenic |
| GGCGGAGAATGCTATTGATG+AGG | 0.588252 | 4_1:-61179134 | Msa0561630:CDS |
| TAAAGAAATAGATATTGATA+CGG | 0.588626 | 4_1:-61181816 | Msa0561630:CDS |
| GAAGATGAAGAACAATGGCA+AGG | 0.589574 | 4_1:-61182290 | Msa0561630:CDS |
| TCTGGTATGAAGGAGAAGGG+TGG | 0.592849 | 4_1:-61178534 | Msa0561630:CDS |
| ATTTATATATAACTTCTCGT+AGG | 0.592851 | 4_1:-61178123 | Msa0561630:three_prime_UTR |
| ACTGTTGCTTGCTGATGACA+AGG | 0.595700 | 4_1:-61179215 | Msa0561630:CDS |
| GAAGGTCACCTCCATATCCA+TGG | 0.597313 | 4_1:+61179561 | None:intergenic |
| GATTTGACCAGTCCATTAGG+TGG | 0.602078 | 4_1:+61181278 | None:intergenic |
| TTTGACCAGTCCATTAGGTG+GGG | 0.605201 | 4_1:+61181280 | None:intergenic |
| TCTGATGCAACATCCTTAGG+AGG | 0.610046 | 4_1:+61180385 | None:intergenic |
| AAGATGAAGAACAATGGCAA+GGG | 0.611817 | 4_1:-61182289 | Msa0561630:CDS |
| CATATGAAAAGAGCAGGATG+AGG | 0.614560 | 4_1:-61181079 | Msa0561630:intron |
| AGATGACTTCTTCATTGATG+AGG | 0.615496 | 4_1:-61179347 | Msa0561630:CDS |
| TGGTTCTGGTATGAAGGAGA+AGG | 0.619698 | 4_1:-61178538 | Msa0561630:CDS |
| ATGCCGACGACGAACTCCGG+CGG | 0.622468 | 4_1:+61182370 | None:intergenic |
| TGAAGAGAGCGATGATTCGG+AGG | 0.627265 | 4_1:-61181864 | Msa0561630:CDS |
| AACTCTTGTGAGTGAACATG+CGG | 0.629244 | 4_1:+61182107 | None:intergenic |
| AAGAAGAAGATGAAGAACAA+TGG | 0.630023 | 4_1:-61182295 | Msa0561630:CDS |
| ATTGATACGGATACTGATGA+TGG | 0.633028 | 4_1:-61181803 | Msa0561630:CDS |
| ATTTAAGAAAAGGAAGCACT+AGG | 0.633678 | 4_1:-61178376 | Msa0561630:exon |
| AGATGGAGATGATGATGCCA+TGG | 0.633714 | 4_1:-61179578 | Msa0561630:CDS |
| AAGCAGTGAAAACAACTCGC+CGG | 0.639422 | 4_1:-61182400 | Msa0561630:five_prime_UTR |
| TGATGAGAACGATTCTGAAG+AGG | 0.644883 | 4_1:-61181777 | Msa0561630:CDS |
| ACACCGCCGGAGTTCGTCGT+CGG | 0.649037 | 4_1:-61182373 | Msa0561630:five_prime_UTR |
| AGCACTAGGTCTTAACCTTG+TGG | 0.651043 | 4_1:-61178362 | Msa0561630:exon |
| TGTTGCTTGCTGATGACAAG+GGG | 0.651064 | 4_1:-61179213 | Msa0561630:CDS |
| GTGTGAACCATGGCAAATCG+AGG | 0.655246 | 4_1:+61182193 | None:intergenic |
| CAGTTTGGGAAGAATATCTG+AGG | 0.657281 | 4_1:-61179477 | Msa0561630:CDS |
| TAAGCTCCAAGATATGGATG+GGG | 0.662936 | 4_1:-61179266 | Msa0561630:CDS |
| CCTTCAACGTATGAATGAGG+AGG | 0.665822 | 4_1:-61181228 | Msa0561630:CDS |
| ACTCGCCGGAAACACACCGC+CGG | 0.668521 | 4_1:-61182386 | Msa0561630:five_prime_UTR |
| ACGTGGATCAGTGTGAACCA+TGG | 0.669461 | 4_1:+61182183 | None:intergenic |
| AGTGAGTAGATTGGACCACA+AGG | 0.675512 | 4_1:+61178347 | None:intergenic |
| CGGAGAATGCTATTGATGAG+GGG | 0.677097 | 4_1:-61179132 | Msa0561630:CDS |
| TCTGCACCCGTCGATAAGCG+AGG | 0.680086 | 4_1:-61182073 | Msa0561630:CDS |
| CTGTTGCTTGCTGATGACAA+GGG | 0.682674 | 4_1:-61179214 | Msa0561630:CDS |
| TGATGATGCCATGGATATGG+AGG | 0.684743 | 4_1:-61179569 | Msa0561630:CDS |
| TATGGACTGGCGGTATGTGA+AGG | 0.687556 | 4_1:-61181440 | Msa0561630:intron |
| GAGTGATAGTGATGATAGCG+AGG | 0.687657 | 4_1:-61179677 | Msa0561630:CDS |
| CTGTTGTTAATATGGACTGG+CGG | 0.700073 | 4_1:-61181450 | Msa0561630:CDS |
| TCATTACTATAAAATGGACG+AGG | 0.707524 | 4_1:-61182008 | Msa0561630:CDS |
| GAGAAGATAGATGCAAAACG+TGG | 0.707824 | 4_1:+61179082 | None:intergenic |
| ATAACAATGAGACTGATGAG+CGG | 0.723456 | 4_1:-61179654 | Msa0561630:CDS |
| TGCCGAGGCTTAGAACACAA+TGG | 0.736491 | 4_1:+61178035 | None:intergenic |
| GGGGCCGTAACAATTTCACA+AGG | 0.738185 | 4_1:+61178311 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTTATTATTAGTAATATT+AGG | - | chr4_1:61178820-61178839 | Msa0561630:intron | 10.0% |
| !!! | GTAAAATAATTTTAATTGAT+CGG | - | chr4_1:61178867-61178886 | Msa0561630:intron | 10.0% |
| !!! | TAATAATATTTAGAGTTTAA+CGG | + | chr4_1:61178956-61178975 | None:intergenic | 10.0% |
| !!! | AAATATTGAAAATTATTTCT+TGG | - | chr4_1:61181581-61181600 | Msa0561630:intron | 10.0% |
| !!! | ACAAAAATTAAATTTTAGAA+AGG | + | chr4_1:61181800-61181819 | None:intergenic | 10.0% |
| !! | TAAAGAAATAGATATTGATA+CGG | - | chr4_1:61178662-61178681 | Msa0561630:intron | 15.0% |
| !!! | TATAGTTTATGCATTTTATT+TGG | - | chr4_1:61178742-61178761 | Msa0561630:intron | 15.0% |
| !! | TTAGTAATATTAGGATTTAA+AGG | - | chr4_1:61178829-61178848 | Msa0561630:intron | 15.0% |
| !!! | AATAATATTTAGAGTTTAAC+GGG | + | chr4_1:61178955-61178974 | None:intergenic | 15.0% |
| !! | CTCTAAATATTATTATGATA+TGG | - | chr4_1:61178961-61178980 | Msa0561630:intron | 15.0% |
| !! | AAATGACTAAATAAAAAATG+AGG | + | chr4_1:61180422-61180441 | None:intergenic | 15.0% |
| !! | TTATAAATGTGAATACTATT+TGG | + | chr4_1:61180445-61180464 | None:intergenic | 15.0% |
| !!! | TACTTATTATCTTTTTTTCT+AGG | + | chr4_1:61180850-61180869 | None:intergenic | 15.0% |
| !!! | TATAATCTGAAGTTTAAAAA+AGG | - | chr4_1:61181309-61181328 | Msa0561630:CDS | 15.0% |
| !!! | ATAAAATACCTTTTAAATTG+TGG | + | chr4_1:61181450-61181469 | None:intergenic | 15.0% |
| !!! | AATAATTTTAATTGATCGGT+TGG | - | chr4_1:61178871-61178890 | Msa0561630:intron | 20.0% |
| !! | AATATTATTATGATATGGAC+AGG | - | chr4_1:61178966-61178985 | Msa0561630:intron | 20.0% |
| !! | TGATATAATGAATGGTTAAA+GGG | + | chr4_1:61179577-61179596 | None:intergenic | 20.0% |
| !! | TTGATATAATGAATGGTTAA+AGG | + | chr4_1:61179578-61179597 | None:intergenic | 20.0% |
| !! | TTTAACCATTCATTATATCA+AGG | - | chr4_1:61179577-61179596 | Msa0561630:CDS | 20.0% |
| !! | TTAAACCTTGATATAATGAA+TGG | + | chr4_1:61179585-61179604 | None:intergenic | 20.0% |
| !!! | GTGTTGATAAATTTATATCT+TGG | - | chr4_1:61180353-61180372 | Msa0561630:intron | 20.0% |
| !! | GAAAAAAAACTTAAAGCTTT+AGG | + | chr4_1:61180719-61180738 | None:intergenic | 20.0% |
| !! | AGATATAAGCAAACATATTA+TGG | - | chr4_1:61180954-61180973 | Msa0561630:intron | 20.0% |
| !! | ATAAAAAATCAAGAACAGTT+TGG | - | chr4_1:61180986-61181005 | Msa0561630:intron | 20.0% |
| !! | TAAAAAATCAAGAACAGTTT+GGG | - | chr4_1:61180987-61181006 | Msa0561630:intron | 20.0% |
| !!! | GATTTAGCTAAGAAATTTTT+TGG | + | chr4_1:61181631-61181650 | None:intergenic | 20.0% |
| !! | ATATACAAGTTTCTTGAATA+GGG | + | chr4_1:61181745-61181764 | None:intergenic | 20.0% |
| !!! | ATTTAATTTTTGTTGATTGC+AGG | - | chr4_1:61181807-61181826 | Msa0561630:CDS | 20.0% |
| !! | GAAAATCACAATTTAAGAAA+AGG | - | chr4_1:61182092-61182111 | Msa0561630:CDS | 20.0% |
| !!! | TAAAAATTTTGTTGCAAACT+AGG | - | chr4_1:61182307-61182326 | Msa0561630:CDS | 20.0% |
| !! | ATTTATATATAACTTCTCGT+AGG | - | chr4_1:61182355-61182374 | Msa0561630:exon | 20.0% |
| !!! | GTTTTTGTTTTTGTAAAAGT+TGG | - | chr4_1:61182466-61182485 | Msa0561630:five_prime_UTR | 20.0% |
| ! | TCTTCGTCATTACTATAAAA+TGG | - | chr4_1:61178464-61178483 | Msa0561630:CDS | 25.0% |
| ! | ATAAACTATACCTGAATTTC+AGG | + | chr4_1:61178732-61178751 | None:intergenic | 25.0% |
| !! | TTTTTACACTGACATCTAAT+AGG | + | chr4_1:61178916-61178935 | None:intergenic | 25.0% |
| !!! | TTGTGTTTTGTTGTGTTTTT+TGG | - | chr4_1:61179135-61179154 | Msa0561630:CDS | 25.0% |
| ! | ATCATGAAAATCTTCTTCAT+CGG | + | chr4_1:61179351-61179370 | None:intergenic | 25.0% |
| ! | TTGTGATATATTTGCTTGAA+TGG | - | chr4_1:61179447-61179466 | Msa0561630:CDS | 25.0% |
| !! | ATCAGCGTGTAAAATATTTT+CGG | + | chr4_1:61179626-61179645 | None:intergenic | 25.0% |
| !! | AGATTCAAGTTAGAAAAACA+TGG | + | chr4_1:61179918-61179937 | None:intergenic | 25.0% |
| ! | CACATTTACAAAGAAAATGA+TGG | - | chr4_1:61180000-61180019 | Msa0561630:intron | 25.0% |
| ! | TTTATATATATGCTGTATCG+TGG | - | chr4_1:61180127-61180146 | Msa0561630:intron | 25.0% |
| !! | ATCGTGGATTATAATAGAAT+AGG | - | chr4_1:61180143-61180162 | Msa0561630:intron | 25.0% |
| ! | AGAACAAAGATTTCTATTCT+CGG | - | chr4_1:61180209-61180228 | Msa0561630:CDS | 25.0% |
| ! | ACATCTGTACTAGTTATTAA+GGG | + | chr4_1:61180563-61180582 | None:intergenic | 25.0% |
| ! | TACATCTGTACTAGTTATTA+AGG | + | chr4_1:61180564-61180583 | None:intergenic | 25.0% |
| ! | TAACAAAAAAAGACAAGTAC+AGG | + | chr4_1:61180588-61180607 | None:intergenic | 25.0% |
| ! | TTAATTGTTATGTATCTGTG+TGG | - | chr4_1:61180605-61180624 | Msa0561630:intron | 25.0% |
| ! | CATTACATAAAGAATATCAG+TGG | + | chr4_1:61180647-61180666 | None:intergenic | 25.0% |
| ! | CAAACATATTATGGAAAAGA+AGG | - | chr4_1:61180963-61180982 | Msa0561630:intron | 25.0% |
| ! | TTCTTCTTCTTCTTAATATC+AGG | + | chr4_1:61181159-61181178 | None:intergenic | 25.0% |
| !!! | TCTTTGTCATTTTTACTTTC+TGG | + | chr4_1:61181189-61181208 | None:intergenic | 25.0% |
| !! | ATACCTTTTAAATTGTGGAT+CGG | + | chr4_1:61181445-61181464 | None:intergenic | 25.0% |
| !! | AAAATTATTTCTTGGCATGA+TGG | - | chr4_1:61181589-61181608 | Msa0561630:intron | 25.0% |
| ! | GAGTTAGACAAGATAATATT+GGG | + | chr4_1:61181659-61181678 | None:intergenic | 25.0% |
| ! | TGAGTTAGACAAGATAATAT+TGG | + | chr4_1:61181660-61181679 | None:intergenic | 25.0% |
| !!! | ATTTGTTATGTTGCTAAGAT+TGG | - | chr4_1:61181688-61181707 | Msa0561630:intron | 25.0% |
| ! | TATACAAGTTTCTTGAATAG+GGG | + | chr4_1:61181744-61181763 | None:intergenic | 25.0% |
| ! | CATATACAAGTTTCTTGAAT+AGG | + | chr4_1:61181746-61181765 | None:intergenic | 25.0% |
| ! | AGAGTTTACTACATGAAAAT+AGG | + | chr4_1:61181769-61181788 | None:intergenic | 25.0% |
| ! | TGAAGAATTATCAGTAGAAA+GGG | - | chr4_1:61181877-61181896 | Msa0561630:CDS | 25.0% |
| ! | GAAATCAAAGCAAGATAAAT+TGG | - | chr4_1:61181988-61182007 | Msa0561630:CDS | 25.0% |
| ! | TAAATTGGAGTTATCATCTT+TGG | - | chr4_1:61182003-61182022 | Msa0561630:CDS | 25.0% |
| ! | ATTTATACAGAACTTCTCAT+TGG | - | chr4_1:61182403-61182422 | Msa0561630:five_prime_UTR | 25.0% |
| !!! | GTTCTTCTTGTTTTCCTTTT+TGG | + | chr4_1:61178145-61178164 | None:intergenic | 30.0% |
| AAGAAGAAGATGAAGAACAA+TGG | - | chr4_1:61178183-61178202 | Msa0561630:three_prime_UTR | 30.0% | |
| TTTATCAGACTTCTTCGAAT+TGG | + | chr4_1:61178229-61178248 | None:intergenic | 30.0% | |
| TCTTTGTCATTACTGTGTAA+TGG | + | chr4_1:61178252-61178271 | None:intergenic | 30.0% | |
| ! | AATCTTTGTTTGATGCTTTG+GGG | + | chr4_1:61178331-61178350 | None:intergenic | 30.0% |
| ! | CAATCTTTGTTTGATGCTTT+GGG | + | chr4_1:61178332-61178351 | None:intergenic | 30.0% |
| TCATTACTATAAAATGGACG+AGG | - | chr4_1:61178470-61178489 | Msa0561630:CDS | 30.0% | |
| ! | GGATAATGATGATGAATTAG+AGG | - | chr4_1:61178539-61178558 | Msa0561630:CDS | 30.0% |
| AGATTGAGAAAGAAACTCAT+AGG | - | chr4_1:61179001-61179020 | Msa0561630:intron | 30.0% | |
| ! | AAACACAATTGACTCACATT+AGG | + | chr4_1:61179077-61179096 | None:intergenic | 30.0% |
| ! | TGGAGTTCAAAGATTTTGTT+TGG | - | chr4_1:61179100-61179119 | Msa0561630:CDS | 30.0% |
| !!! | TTGTTGTGTTTTTTGGTTGT+AGG | - | chr4_1:61179142-61179161 | Msa0561630:CDS | 30.0% |
| TCAAGCAAATATATCACAAC+AGG | + | chr4_1:61179446-61179465 | None:intergenic | 30.0% | |
| ! | TTTTCAACTTGAATCAAGCA+TGG | - | chr4_1:61179502-61179521 | Msa0561630:CDS | 30.0% |
| ATTCTAGATCATAAGAAAGG+AGG | + | chr4_1:61179713-61179732 | None:intergenic | 30.0% | |
| !!! | TGTCATTACGCTTTGTTTTA+TGG | - | chr4_1:61179760-61179779 | Msa0561630:intron | 30.0% |
| TTTATGGAGATTATACTTCC+CGG | - | chr4_1:61179776-61179795 | Msa0561630:intron | 30.0% | |
| AATATGAGTGACATGTGATA+CGG | + | chr4_1:61179840-61179859 | None:intergenic | 30.0% | |
| ! | TTCAAGTTAGAAAAACATGG+TGG | + | chr4_1:61179915-61179934 | None:intergenic | 30.0% |
| GAACAAAGATTTCTATTCTC+GGG | - | chr4_1:61180210-61180229 | Msa0561630:CDS | 30.0% | |
| ACAGTAAAGTTGAACTTACT+TGG | - | chr4_1:61180242-61180261 | Msa0561630:CDS | 30.0% | |
| CAGTAAAGTTGAACTTACTT+GGG | - | chr4_1:61180243-61180262 | Msa0561630:CDS | 30.0% | |
| TATCTTGGAAAAATCTTGTG+TGG | - | chr4_1:61180368-61180387 | Msa0561630:intron | 30.0% | |
| ! | TATCAAATTTTATGCTGCGA+TGG | - | chr4_1:61180468-61180487 | Msa0561630:CDS | 30.0% |
| ATCTGAATTATTGTCAAGCA+AGG | + | chr4_1:61180878-61180897 | None:intergenic | 30.0% | |
| GACAATAATTCAGATGAAGA+TGG | - | chr4_1:61180883-61180902 | Msa0561630:intron | 30.0% | |
| !!! | ATGCTTTGATTTGTTTTTCC+TGG | + | chr4_1:61181049-61181068 | None:intergenic | 30.0% |
| ! | TCTGAAGTTTAAAAAAGGCA+AGG | - | chr4_1:61181314-61181333 | Msa0561630:CDS | 30.0% |
| CTGAAGTTTAAAAAAGGCAA+GGG | - | chr4_1:61181315-61181334 | Msa0561630:CDS | 30.0% | |
| TTATGTTGCTAAGATTGGAA+TGG | - | chr4_1:61181693-61181712 | Msa0561630:intron | 30.0% | |
| ATACAAGTTTCTTGAATAGG+GGG | + | chr4_1:61181743-61181762 | None:intergenic | 30.0% | |
| GTGAAGAATTATCAGTAGAA+AGG | - | chr4_1:61181876-61181895 | Msa0561630:CDS | 30.0% | |
| GAAGACAATTGTGTTTCTTT+CGG | + | chr4_1:61181917-61181936 | None:intergenic | 30.0% | |
| ! | TTTCTTTGTATTGACATCAG+AGG | + | chr4_1:61182068-61182087 | None:intergenic | 30.0% |
| !! | ATTTAAGAAAAGGAAGCACT+AGG | - | chr4_1:61182102-61182121 | Msa0561630:CDS | 30.0% |
| ! | AAATTTTGTTGCAAACTAGG+TGG | - | chr4_1:61182310-61182329 | Msa0561630:CDS | 30.0% |
| TATATATAACTTCTCGTAGG+TGG | - | chr4_1:61182358-61182377 | Msa0561630:exon | 30.0% | |
| AAGTTGGAATTCATTCCAAA+AGG | - | chr4_1:61182482-61182501 | Msa0561630:five_prime_UTR | 30.0% | |
| AGTTGGAATTCATTCCAAAA+GGG | - | chr4_1:61182483-61182502 | Msa0561630:five_prime_UTR | 30.0% | |
| !! | TGCTGAAGTTTGTGGTTTTA+GGG | + | chr4_1:61178027-61178046 | None:intergenic | 35.0% |
| AAGATGAAGAACAATGGCAA+GGG | - | chr4_1:61178189-61178208 | Msa0561630:three_prime_UTR | 35.0% | |
| ! | ATCTTTGTTTGATGCTTTGG+GGG | + | chr4_1:61178330-61178349 | None:intergenic | 35.0% |
| ! | GCAATCTTTGTTTGATGCTT+TGG | + | chr4_1:61178333-61178352 | None:intergenic | 35.0% |
| !! | TGCGAATTAGCCTTATCTTT+GGG | + | chr4_1:61178435-61178454 | None:intergenic | 35.0% |
| GAAAGTTAAGAATGCGAAAC+CGG | - | chr4_1:61178569-61178588 | Msa0561630:CDS | 35.0% | |
| TCAGTTCCATTATCAATCTC+CGG | + | chr4_1:61178591-61178610 | None:intergenic | 35.0% | |
| ATTGATACGGATACTGATGA+TGG | - | chr4_1:61178675-61178694 | Msa0561630:intron | 35.0% | |
| ATTATGATATGGACAGGAAG+AGG | - | chr4_1:61178972-61178991 | Msa0561630:intron | 35.0% | |
| GTGAGTCAATTGTGTTTATC+TGG | - | chr4_1:61179080-61179099 | Msa0561630:CDS | 35.0% | |
| ACTATTTATCCAACCGAGTT+TGG | - | chr4_1:61179227-61179246 | Msa0561630:CDS | 35.0% | |
| ATGAATGAGGAGGAAGTTAA+AGG | - | chr4_1:61179260-61179279 | Msa0561630:CDS | 35.0% | |
| TGAATGAGGAGGAAGTTAAA+GGG | - | chr4_1:61179261-61179280 | Msa0561630:CDS | 35.0% | |
| GAAAGGAGGATAACAAAGAT+AGG | + | chr4_1:61179699-61179718 | None:intergenic | 35.0% | |
| CGCATTCTAGATCATAAGAA+AGG | + | chr4_1:61179716-61179735 | None:intergenic | 35.0% | |
| ATATGAGTGACATGTGATAC+GGG | + | chr4_1:61179839-61179858 | None:intergenic | 35.0% | |
| GCACGTCAAAATAGTAAACA+TGG | + | chr4_1:61179872-61179891 | None:intergenic | 35.0% | |
| TAGAAAAACATGGTGGTAAG+AGG | + | chr4_1:61179908-61179927 | None:intergenic | 35.0% | |
| GAATCTTTATCTTGCTCTCT+AGG | - | chr4_1:61179932-61179951 | Msa0561630:intron | 35.0% | |
| ! | CTCTAGGTACTATTTTGCTT+TGG | - | chr4_1:61179948-61179967 | Msa0561630:intron | 35.0% |
| ! | TAGGTACTATTTTGCTTTGG+TGG | - | chr4_1:61179951-61179970 | Msa0561630:intron | 35.0% |
| TTTGTAAATGTGATCTGCTG+TGG | + | chr4_1:61179992-61180011 | None:intergenic | 35.0% | |
| GGAATAAACCTTAAGTCAAG+TGG | + | chr4_1:61180051-61180070 | None:intergenic | 35.0% | |
| AAGGTTTATTCCAGACGATA+TGG | - | chr4_1:61180059-61180078 | Msa0561630:intron | 35.0% | |
| TGTTTGAATTCCATATCGTC+TGG | + | chr4_1:61180072-61180091 | None:intergenic | 35.0% | |
| ! | TTCAAAGTATTTGCTCGAAG+AGG | + | chr4_1:61180280-61180299 | None:intergenic | 35.0% |
| ! | TTCGAGCAAATACTTTGAAG+CGG | - | chr4_1:61180281-61180300 | Msa0561630:CDS | 35.0% |
| !! | ATCTTGTGTGGTGTTAGTTT+TGG | - | chr4_1:61180380-61180399 | Msa0561630:intron | 35.0% |
| AAAATGAGGTAACTACTCAG+AGG | + | chr4_1:61180408-61180427 | None:intergenic | 35.0% | |
| GTTATTAAGGGACAAAAGAC+TGG | + | chr4_1:61180551-61180570 | None:intergenic | 35.0% | |
| ATCTGTGTGGTAGAAGAAAT+TGG | - | chr4_1:61180618-61180637 | Msa0561630:intron | 35.0% | |
| TCTGTGTGGTAGAAGAAATT+GGG | - | chr4_1:61180619-61180638 | Msa0561630:intron | 35.0% | |
| TTCCTTTCTATTGTGATAGC+TGG | - | chr4_1:61180741-61180760 | Msa0561630:intron | 35.0% | |
| ATAACAATGAGACTGATGAG+CGG | - | chr4_1:61180824-61180843 | Msa0561630:intron | 35.0% | |
| ATCTTGCAAACCTGTATTGA+AGG | + | chr4_1:61180938-61180957 | None:intergenic | 35.0% | |
| AGATGACTTCTTCATTGATG+AGG | - | chr4_1:61181131-61181150 | Msa0561630:CDS | 35.0% | |
| AGATCATAAGCTCCAAGATA+TGG | - | chr4_1:61181206-61181225 | Msa0561630:CDS | 35.0% | |
| ATAAGCTCCAAGATATGGAT+GGG | - | chr4_1:61181211-61181230 | Msa0561630:CDS | 35.0% | |
| TAAAAAAGGCAAGGGCAAAA+AGG | - | chr4_1:61181323-61181342 | Msa0561630:intron | 35.0% | |
| GGATCATCAAATGCATTGTT+TGG | + | chr4_1:61181378-61181397 | None:intergenic | 35.0% | |
| ! | CTTTTAAATTGTGGATCGGT+GGG | + | chr4_1:61181441-61181460 | None:intergenic | 35.0% |
| TCACTACTATTTCACTCTGA+TGG | - | chr4_1:61181535-61181554 | Msa0561630:intron | 35.0% | |
| CACTACTATTTCACTCTGAT+GGG | - | chr4_1:61181536-61181555 | Msa0561630:intron | 35.0% | |
| ACTACTATTTCACTCTGATG+GGG | - | chr4_1:61181537-61181556 | Msa0561630:intron | 35.0% | |
| ! | TAGGGGGAAGTACAATTATA+GGG | + | chr4_1:61181727-61181746 | None:intergenic | 35.0% |
| ! | ATAGGGGGAAGTACAATTAT+AGG | + | chr4_1:61181728-61181747 | None:intergenic | 35.0% |
| GAAACACAATTGTCTTCTGA+TGG | - | chr4_1:61181920-61181939 | Msa0561630:CDS | 35.0% | |
| GATGTCAATACAAAGAAAGC+TGG | - | chr4_1:61182070-61182089 | Msa0561630:CDS | 35.0% | |
| TTCCATTCAAGTGAGTAGAT+TGG | + | chr4_1:61182143-61182162 | None:intergenic | 35.0% | |
| GAGACCTTGTGAAATTGTTA+CGG | - | chr4_1:61182163-61182182 | Msa0561630:CDS | 35.0% | |
| TACAAAAACAAAAACTGCCG+AGG | + | chr4_1:61182461-61182480 | None:intergenic | 35.0% | |
| ! | CTGCTGAAGTTTGTGGTTTT+AGG | + | chr4_1:61178028-61178047 | None:intergenic | 40.0% |
| ACTGCTTGTTTCAGAGAGAA+CGG | + | chr4_1:61178065-61178084 | None:intergenic | 40.0% | |
| GAAGATGAAGAACAATGGCA+AGG | - | chr4_1:61178188-61178207 | Msa0561630:three_prime_UTR | 40.0% | |
| AACTCTTGTGAGTGAACATG+CGG | + | chr4_1:61178374-61178393 | None:intergenic | 40.0% | |
| !! | CTGCGAATTAGCCTTATCTT+TGG | + | chr4_1:61178436-61178455 | None:intergenic | 40.0% |
| CAAAGATAAGGCTAATTCGC+AGG | - | chr4_1:61178434-61178453 | Msa0561630:CDS | 40.0% | |
| AGTAGAACAGAGTAGTGATG+AGG | - | chr4_1:61178515-61178534 | Msa0561630:CDS | 40.0% | |
| ! | TGATGAGAACGATTCTGAAG+AGG | - | chr4_1:61178701-61178720 | Msa0561630:intron | 40.0% |
| AGAGGATGAACCTGAAATTC+AGG | - | chr4_1:61178719-61178738 | Msa0561630:intron | 40.0% | |
| TGAGAAAGAAACTCATAGGC+TGG | - | chr4_1:61179005-61179024 | Msa0561630:intron | 40.0% | |
| ! | TAGGCTGGCTGTTGTTAATA+TGG | - | chr4_1:61179020-61179039 | Msa0561630:intron | 40.0% |
| TGGCTGTTGTTAATATGGAC+TGG | - | chr4_1:61179025-61179044 | Msa0561630:intron | 40.0% | |
| !! | CTGTTGTTAATATGGACTGG+CGG | - | chr4_1:61179028-61179047 | Msa0561630:intron | 40.0% |
| !!! | TGTTTTTTGGTTGTAGGCTG+TGG | - | chr4_1:61179148-61179167 | Msa0561630:CDS | 40.0% |
| ATTTGACCAGTCCATTAGGT+GGG | + | chr4_1:61179202-61179221 | None:intergenic | 40.0% | |
| !! | ACCTAATGGACTGGTCAAAT+CGG | - | chr4_1:61179202-61179221 | Msa0561630:CDS | 40.0% |
| TCACCATCAAATAGAGCAAC+AGG | + | chr4_1:61179287-61179306 | None:intergenic | 40.0% | |
| AAGTGATGAAGACGATAGTG+AGG | - | chr4_1:61179316-61179335 | Msa0561630:CDS | 40.0% | |
| CATATGAAAAGAGCAGGATG+AGG | - | chr4_1:61179399-61179418 | Msa0561630:CDS | 40.0% | |
| TACACGCTGATATTGTCAAG+TGG | - | chr4_1:61179635-61179654 | Msa0561630:CDS | 40.0% | |
| ACACGCTGATATTGTCAAGT+GGG | - | chr4_1:61179636-61179655 | Msa0561630:CDS | 40.0% | |
| GGAGGATAACAAAGATAGGA+AGG | + | chr4_1:61179695-61179714 | None:intergenic | 40.0% | |
| ! | TGATCTAGAATGCGTCTATG+TGG | - | chr4_1:61179722-61179741 | Msa0561630:intron | 40.0% |
| ATTATACTTCCCGGAACACA+TGG | - | chr4_1:61179785-61179804 | Msa0561630:intron | 40.0% | |
| TTATACTTCCCGGAACACAT+GGG | - | chr4_1:61179786-61179805 | Msa0561630:intron | 40.0% | |
| TCACTATTTCCCATGTGTTC+CGG | + | chr4_1:61179798-61179817 | None:intergenic | 40.0% | |
| ACATGGTGGTAAGAGGAAAA+GGG | + | chr4_1:61179901-61179920 | None:intergenic | 40.0% | |
| AACATGGTGGTAAGAGGAAA+AGG | + | chr4_1:61179902-61179921 | None:intergenic | 40.0% | |
| CATCGAATCCACTTGACTTA+AGG | - | chr4_1:61180040-61180059 | Msa0561630:intron | 40.0% | |
| ! | TCTTTGTTCTCGTAGTTTGC+AGG | + | chr4_1:61180199-61180218 | None:intergenic | 40.0% |
| AGTTGAACTTACTTGGGATG+AGG | - | chr4_1:61180249-61180268 | Msa0561630:CDS | 40.0% | |
| GTATATGTATGTGCATGGCA+TGG | + | chr4_1:61180513-61180532 | None:intergenic | 40.0% | |
| TGAGCGTATATGTATGTGCA+TGG | + | chr4_1:61180518-61180537 | None:intergenic | 40.0% | |
| CTGTGTGGTAGAAGAAATTG+GGG | - | chr4_1:61180620-61180639 | Msa0561630:intron | 40.0% | |
| AGCCAGCTATCACAATAGAA+AGG | + | chr4_1:61180746-61180765 | None:intergenic | 40.0% | |
| ! | AGATGATGATGCCATGGATA+TGG | - | chr4_1:61180906-61180925 | Msa0561630:intron | 40.0% |
| CAGTTTGGGAAGAATATCTG+AGG | - | chr4_1:61181001-61181020 | Msa0561630:intron | 40.0% | |
| AACGTGAGAAAAAGAAAGCC+AGG | - | chr4_1:61181028-61181047 | Msa0561630:intron | 40.0% | |
| CATAAGCTCCAAGATATGGA+TGG | - | chr4_1:61181210-61181229 | Msa0561630:CDS | 40.0% | |
| TAAGCTCCAAGATATGGATG+GGG | - | chr4_1:61181212-61181231 | Msa0561630:CDS | 40.0% | |
| AAGCTCTTCTTTGCTTGCTT+TGG | + | chr4_1:61181241-61181260 | None:intergenic | 40.0% | |
| GAGAAGATAGATGCAAAACG+TGG | + | chr4_1:61181399-61181418 | None:intergenic | 40.0% | |
| ! | CCTTTTAAATTGTGGATCGG+TGG | + | chr4_1:61181442-61181461 | None:intergenic | 40.0% |
| CCACCGATCCACAATTTAAA+AGG | - | chr4_1:61181439-61181458 | Msa0561630:intron | 40.0% | |
| CAATTGTCTTCTGATGGTTC+TGG | - | chr4_1:61181926-61181945 | Msa0561630:CDS | 40.0% | |
| !! | TTCTGATGGTTCTGGTATGA+AGG | - | chr4_1:61181934-61181953 | Msa0561630:CDS | 40.0% |
| TATTGACATCAGAGGATAGC+TGG | + | chr4_1:61182060-61182079 | None:intergenic | 40.0% | |
| GTCCAATCTACTCACTTGAA+TGG | - | chr4_1:61182138-61182157 | Msa0561630:CDS | 40.0% | |
| ! | GGTTGGTATTGGATCTATTG+AGG | - | chr4_1:61182234-61182253 | Msa0561630:CDS | 40.0% |
| AGGCTTAGAACACAATGGTT+AGG | + | chr4_1:61182441-61182460 | None:intergenic | 40.0% | |
| ! | AACCATTGTGTTCTAAGCCT+CGG | - | chr4_1:61182441-61182460 | Msa0561630:five_prime_UTR | 40.0% |
| TGTTTCAGAGAGAACGGCAA+AGG | + | chr4_1:61178059-61178078 | None:intergenic | 45.0% | |
| AAGCAGTGAAAACAACTCGC+CGG | - | chr4_1:61178078-61178097 | Msa0561630:three_prime_UTR | 45.0% | |
| CATCGCAATGGGATCCAAAA+AGG | - | chr4_1:61178128-61178147 | Msa0561630:three_prime_UTR | 45.0% | |
| AAGAACCACGACGACAACAA+AGG | - | chr4_1:61178159-61178178 | Msa0561630:three_prime_UTR | 45.0% | |
| AGAACCACGACGACAACAAA+GGG | - | chr4_1:61178160-61178179 | Msa0561630:three_prime_UTR | 45.0% | |
| GAAGAACAATGGCAAGGGTA+AGG | - | chr4_1:61178194-61178213 | Msa0561630:three_prime_UTR | 45.0% | |
| GCGAGGTAAACCCAAAGATA+AGG | - | chr4_1:61178422-61178441 | Msa0561630:CDS | 45.0% | |
| AGAACAGAGTAGTGATGAGG+AGG | - | chr4_1:61178518-61178537 | Msa0561630:CDS | 45.0% | |
| GCGAAACCGGAGATTGATAA+TGG | - | chr4_1:61178582-61178601 | Msa0561630:CDS | 45.0% | |
| GTCTGAAGAGAGCGATGATT+CGG | - | chr4_1:61178611-61178630 | Msa0561630:CDS | 45.0% | |
| AGTTCATTAGCCCCACCTAA+TGG | - | chr4_1:61179188-61179207 | Msa0561630:CDS | 45.0% | |
| TTTGACCAGTCCATTAGGTG+GGG | + | chr4_1:61179201-61179220 | None:intergenic | 45.0% | |
| GATTTGACCAGTCCATTAGG+TGG | + | chr4_1:61179203-61179222 | None:intergenic | 45.0% | |
| !! | ACCGATTTGACCAGTCCATT+AGG | + | chr4_1:61179206-61179225 | None:intergenic | 45.0% |
| CATACGTTGAAGGCCAAACT+CGG | + | chr4_1:61179243-61179262 | None:intergenic | 45.0% | |
| TGGCCTTCAACGTATGAATG+AGG | - | chr4_1:61179247-61179266 | Msa0561630:CDS | 45.0% | |
| CCTCCTCATTCATACGTTGA+AGG | + | chr4_1:61179253-61179272 | None:intergenic | 45.0% | |
| CCTTCAACGTATGAATGAGG+AGG | - | chr4_1:61179250-61179269 | Msa0561630:CDS | 45.0% | |
| TGCGTGCATATGAAAAGAGC+AGG | - | chr4_1:61179393-61179412 | Msa0561630:CDS | 45.0% | |
| CACTATTTCCCATGTGTTCC+GGG | + | chr4_1:61179797-61179816 | None:intergenic | 45.0% | |
| GGTAAGAGGAAAAGGGAGAT+GGG | + | chr4_1:61179894-61179913 | None:intergenic | 45.0% | |
| TGGTAAGAGGAAAAGGGAGA+TGG | + | chr4_1:61179895-61179914 | None:intergenic | 45.0% | |
| GGAATTCAAACAGCCTCCTA+AGG | - | chr4_1:61180080-61180099 | Msa0561630:intron | 45.0% | |
| TCTGATGCAACATCCTTAGG+AGG | + | chr4_1:61180096-61180115 | None:intergenic | 45.0% | |
| TCCTAAGGATGTTGCATCAG+AGG | - | chr4_1:61180095-61180114 | Msa0561630:intron | 45.0% | |
| ACCTCTGATGCAACATCCTT+AGG | + | chr4_1:61180099-61180118 | None:intergenic | 45.0% | |
| ! | ATTGTGATAGCTGGCTCAGT+TGG | - | chr4_1:61180750-61180769 | Msa0561630:intron | 45.0% |
| ! | ATAGCTGGCTCAGTTGGAAA+TGG | - | chr4_1:61180756-61180775 | Msa0561630:intron | 45.0% |
| ! | GAGTGATAGTGATGATAGCG+AGG | - | chr4_1:61180801-61180820 | Msa0561630:intron | 45.0% |
| ! | AGATGGAGATGATGATGCCA+TGG | - | chr4_1:61180900-61180919 | Msa0561630:intron | 45.0% |
| ! | TGATGATGCCATGGATATGG+AGG | - | chr4_1:61180909-61180928 | Msa0561630:intron | 45.0% |
| ATGGAGGTGACCTTCAATAC+AGG | - | chr4_1:61180925-61180944 | Msa0561630:intron | 45.0% | |
| ! | ACTGTTGCTTGCTGATGACA+AGG | - | chr4_1:61181263-61181282 | Msa0561630:CDS | 45.0% |
| ! | CTGTTGCTTGCTGATGACAA+GGG | - | chr4_1:61181264-61181283 | Msa0561630:CDS | 45.0% |
| ! | TGTTGCTTGCTGATGACAAG+GGG | - | chr4_1:61181265-61181284 | Msa0561630:CDS | 45.0% |
| AAAAGGCAAGGGCAAAAAGG+CGG | - | chr4_1:61181326-61181345 | Msa0561630:intron | 45.0% | |
| GCGGAGAATGCTATTGATGA+GGG | - | chr4_1:61181345-61181364 | Msa0561630:intron | 45.0% | |
| CGGAGAATGCTATTGATGAG+GGG | - | chr4_1:61181346-61181365 | Msa0561630:intron | 45.0% | |
| TCACTCTGATGGGGTAAACT+TGG | - | chr4_1:61181546-61181565 | Msa0561630:intron | 45.0% | |
| CACTCTGATGGGGTAAACTT+GGG | - | chr4_1:61181547-61181566 | Msa0561630:intron | 45.0% | |
| GCATGATGGTTACATTCAGC+TGG | - | chr4_1:61181603-61181622 | Msa0561630:intron | 45.0% | |
| !! | TGGTTCTGGTATGAAGGAGA+AGG | - | chr4_1:61181940-61181959 | Msa0561630:CDS | 45.0% |
| ! | GGTTCTGGTATGAAGGAGAA+GGG | - | chr4_1:61181941-61181960 | Msa0561630:CDS | 45.0% |
| AGCACTAGGTCTTAACCTTG+TGG | - | chr4_1:61182116-61182135 | Msa0561630:CDS | 45.0% | |
| AGTGAGTAGATTGGACCACA+AGG | + | chr4_1:61182134-61182153 | None:intergenic | 45.0% | |
| ! | ATTTTTGCCGGCATGTGGAA+GGG | + | chr4_1:61182190-61182209 | None:intergenic | 45.0% |
| ! | TTTACCCCAGCGATTTTTGC+CGG | + | chr4_1:61182202-61182221 | None:intergenic | 45.0% |
| AAATCGCTGGGGTAAAAAGC+AGG | - | chr4_1:61182206-61182225 | Msa0561630:CDS | 45.0% | |
| GTAAAAAGCAGGCATGTGGT+TGG | - | chr4_1:61182217-61182236 | Msa0561630:CDS | 45.0% | |
| GAAGGAGCTGCTGAAGTTTG+TGG | + | chr4_1:61178035-61178054 | None:intergenic | 50.0% | |
| AGAGAGAACGGCAAAGGTGA+AGG | + | chr4_1:61178053-61178072 | None:intergenic | 50.0% | |
| ! | TCTTCCCTTTGTTGTCGTCG+TGG | + | chr4_1:61178167-61178186 | None:intergenic | 50.0% |
| ! | CGAAGATCCTCGATTTGCCA+TGG | - | chr4_1:61178278-61178297 | Msa0561630:three_prime_UTR | 50.0% |
| GTGTGAACCATGGCAAATCG+AGG | + | chr4_1:61178288-61178307 | None:intergenic | 50.0% | |
| ACGTGGATCAGTGTGAACCA+TGG | + | chr4_1:61178298-61178317 | None:intergenic | 50.0% | |
| TTTGGGGGTTCACGAAAACG+TGG | + | chr4_1:61178315-61178334 | None:intergenic | 50.0% | |
| TTATCGACGGGTGCAGAAGA+AGG | + | chr4_1:61178402-61178421 | None:intergenic | 50.0% | |
| GGTTTACCTCGCTTATCGAC+GGG | + | chr4_1:61178414-61178433 | None:intergenic | 50.0% | |
| GGGTTTACCTCGCTTATCGA+CGG | + | chr4_1:61178415-61178434 | None:intergenic | 50.0% | |
| ! | TGAAGAGAGCGATGATTCGG+AGG | - | chr4_1:61178614-61178633 | Msa0561630:CDS | 50.0% |
| ! | TGATTCGGAGGCTGATGCTA+TGG | - | chr4_1:61178626-61178645 | Msa0561630:CDS | 50.0% |
| !! | CGGTTGGTCTCTTAACACGA+TGG | - | chr4_1:61178887-61178906 | Msa0561630:intron | 50.0% |
| !! | TATGGACTGGCGGTATGTGA+AGG | - | chr4_1:61179038-61179057 | Msa0561630:intron | 50.0% |
| ! | ATTAGCCCCACCTAATGGAC+TGG | - | chr4_1:61179193-61179212 | Msa0561630:CDS | 50.0% |
| GGGCCTGTTGCTCTATTTGA+TGG | - | chr4_1:61179281-61179300 | Msa0561630:CDS | 50.0% | |
| GAAGGTCACCTCCATATCCA+TGG | + | chr4_1:61180920-61180939 | None:intergenic | 50.0% | |
| TGGCTACCCCATCCATATCT+TGG | + | chr4_1:61181221-61181240 | None:intergenic | 50.0% | |
| GGCGGAGAATGCTATTGATG+AGG | - | chr4_1:61181344-61181363 | Msa0561630:intron | 50.0% | |
| TCTGGTATGAAGGAGAAGGG+TGG | - | chr4_1:61181944-61181963 | Msa0561630:CDS | 50.0% | |
| CTGGTATGAAGGAGAAGGGT+GGG | - | chr4_1:61181945-61181964 | Msa0561630:CDS | 50.0% | |
| TGGTATGAAGGAGAAGGGTG+GGG | - | chr4_1:61181946-61181965 | Msa0561630:CDS | 50.0% | |
| GGGGCCGTAACAATTTCACA+AGG | + | chr4_1:61182170-61182189 | None:intergenic | 50.0% | |
| ! | TTTTTGCCGGCATGTGGAAG+GGG | + | chr4_1:61182189-61182208 | None:intergenic | 50.0% |
| ! | GATTTTTGCCGGCATGTGGA+AGG | + | chr4_1:61182191-61182210 | None:intergenic | 50.0% |
| ACATGCCGGCAAAAATCGCT+GGG | - | chr4_1:61182194-61182213 | Msa0561630:CDS | 50.0% | |
| TGGGGTAAAAAGCAGGCATG+TGG | - | chr4_1:61182213-61182232 | Msa0561630:CDS | 50.0% | |
| ! | AGCAGGCATGTGGTTGGTAT+TGG | - | chr4_1:61182223-61182242 | Msa0561630:CDS | 50.0% |
| TGCCGAGGCTTAGAACACAA+TGG | + | chr4_1:61182446-61182465 | None:intergenic | 50.0% | |
| TTCGTCGTCGGCATCGCAAT+GGG | - | chr4_1:61178117-61178136 | Msa0561630:three_prime_UTR | 55.0% | |
| CGTTGAAGGCCAAACTCGGT+TGG | + | chr4_1:61179239-61179258 | None:intergenic | 55.0% | |
| GCGGAAATTCACTGACGAGC+AGG | - | chr4_1:61180300-61180319 | Msa0561630:intron | 55.0% | |
| CTTGCTGATGACAAGGGGAC+AGG | - | chr4_1:61181270-61181289 | Msa0561630:CDS | 55.0% | |
| GATGACAAGGGGACAGGTAC+TGG | - | chr4_1:61181276-61181295 | Msa0561630:CDS | 55.0% | |
| !! | GGGACAGGTACTGGTCTCAA+GGG | - | chr4_1:61181285-61181304 | Msa0561630:CDS | 55.0% |
| CTGGCACAGAAGCAGCAGAA+GGG | - | chr4_1:61181851-61181870 | Msa0561630:CDS | 55.0% | |
| AAGGAGAAGGGTGGGGAAGA+AGG | - | chr4_1:61181953-61181972 | Msa0561630:CDS | 55.0% | |
| AGGAGAAGGGTGGGGAAGAA+GGG | - | chr4_1:61181954-61181973 | Msa0561630:CDS | 55.0% | |
| ! | CAGCGATTTTTGCCGGCATG+TGG | + | chr4_1:61182195-61182214 | None:intergenic | 55.0% |
| CACATGCCGGCAAAAATCGC+TGG | - | chr4_1:61182193-61182212 | Msa0561630:CDS | 55.0% | |
| CATGCCGGCAAAAATCGCTG+GGG | - | chr4_1:61182195-61182214 | Msa0561630:CDS | 55.0% | |
| GAACTCCGGCGGTGTGTTTC+CGG | + | chr4_1:61178100-61178119 | None:intergenic | 60.0% | |
| GTTCGTCGTCGGCATCGCAA+TGG | - | chr4_1:61178116-61178135 | Msa0561630:three_prime_UTR | 60.0% | |
| TCTGCACCCGTCGATAAGCG+AGG | - | chr4_1:61178405-61178424 | Msa0561630:CDS | 60.0% | |
| !! | GGGGACAGGTACTGGTCTCA+AGG | - | chr4_1:61181284-61181303 | Msa0561630:CDS | 60.0% |
| TGCCAGCTGCCTGGCATACA+CGG | + | chr4_1:61181837-61181856 | None:intergenic | 60.0% | |
| GCTGGCACAGAAGCAGCAGA+AGG | - | chr4_1:61181850-61181869 | Msa0561630:CDS | 60.0% | |
| TTACGGCCCCTTCCACATGC+CGG | - | chr4_1:61182180-61182199 | Msa0561630:CDS | 60.0% | |
| ACTCGCCGGAAACACACCGC+CGG | - | chr4_1:61178092-61178111 | Msa0561630:three_prime_UTR | 65.0% | |
| ACACCGCCGGAGTTCGTCGT+CGG | - | chr4_1:61178105-61178124 | Msa0561630:three_prime_UTR | 65.0% | |
| ATGCCGACGACGAACTCCGG+CGG | + | chr4_1:61178111-61178130 | None:intergenic | 65.0% | |
| GCGATGCCGACGACGAACTC+CGG | + | chr4_1:61178114-61178133 | None:intergenic | 65.0% | |
| CTGCTTCTGTGCCAGCTGCC+TGG | + | chr4_1:61181846-61181865 | None:intergenic | 65.0% | |
| !! | GCAGGAGCGCCGTGTATGCC+AGG | - | chr4_1:61181825-61181844 | Msa0561630:CDS | 70.0% |
| CGCCGTGTATGCCAGGCAGC+TGG | - | chr4_1:61181832-61181851 | Msa0561630:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 61177994 | 61182506 | 61177994 | ID=Msa0561630;Name=Msa0561630 |
| chr4_1 | mRNA | 61177994 | 61182506 | 61177994 | ID=Msa0561630-mRNA-1;Parent=Msa0561630;Name=Msa0561630-mRNA-1;_AED=0.02;_eAED=0.02;_QI=141|1|1|1|1|1|7|383|740 |
| chr4_1 | exon | 61177994 | 61178671 | 61177994 | ID=Msa0561630-mRNA-1:exon:19193;Parent=Msa0561630-mRNA-1 |
| chr4_1 | exon | 61179040 | 61179740 | 61179040 | ID=Msa0561630-mRNA-1:exon:19192;Parent=Msa0561630-mRNA-1 |
| chr4_1 | exon | 61180179 | 61180307 | 61180179 | ID=Msa0561630-mRNA-1:exon:19191;Parent=Msa0561630-mRNA-1 |
| chr4_1 | exon | 61180384 | 61180546 | 61180384 | ID=Msa0561630-mRNA-1:exon:19190;Parent=Msa0561630-mRNA-1 |
| chr4_1 | exon | 61181080 | 61181336 | 61181080 | ID=Msa0561630-mRNA-1:exon:19189;Parent=Msa0561630-mRNA-1 |
| chr4_1 | exon | 61181441 | 61181512 | 61181441 | ID=Msa0561630-mRNA-1:exon:19188;Parent=Msa0561630-mRNA-1 |
| chr4_1 | exon | 61181760 | 61182506 | 61181760 | ID=Msa0561630-mRNA-1:exon:19187;Parent=Msa0561630-mRNA-1 |
| chr4_1 | five_prime_UTR | 61182366 | 61182506 | 61182366 | ID=Msa0561630-mRNA-1:five_prime_utr;Parent=Msa0561630-mRNA-1 |
| chr4_1 | CDS | 61181760 | 61182365 | 61181760 | ID=Msa0561630-mRNA-1:cds;Parent=Msa0561630-mRNA-1 |
| chr4_1 | CDS | 61181441 | 61181512 | 61181441 | ID=Msa0561630-mRNA-1:cds;Parent=Msa0561630-mRNA-1 |
| chr4_1 | CDS | 61181080 | 61181336 | 61181080 | ID=Msa0561630-mRNA-1:cds;Parent=Msa0561630-mRNA-1 |
| chr4_1 | CDS | 61180384 | 61180546 | 61180384 | ID=Msa0561630-mRNA-1:cds;Parent=Msa0561630-mRNA-1 |
| chr4_1 | CDS | 61180179 | 61180307 | 61180179 | ID=Msa0561630-mRNA-1:cds;Parent=Msa0561630-mRNA-1 |
| chr4_1 | CDS | 61179040 | 61179740 | 61179040 | ID=Msa0561630-mRNA-1:cds;Parent=Msa0561630-mRNA-1 |
| chr4_1 | CDS | 61178377 | 61178671 | 61178377 | ID=Msa0561630-mRNA-1:cds;Parent=Msa0561630-mRNA-1 |
| chr4_1 | three_prime_UTR | 61177994 | 61178376 | 61177994 | ID=Msa0561630-mRNA-1:three_prime_utr;Parent=Msa0561630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
