Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0639820 | XP_024631389.1 | 96.377 | 414 | 15 | 0 | 1 | 414 | 1 | 414 | 0.0 | 810 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0639820 | sp|Q9M0Y3|ENT3_ARATH | 68.460 | 409 | 128 | 1 | 4 | 412 | 7 | 414 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012040 | Msa0639820 | 0.811940 | 5.445339e-51 | -8.615850e-47 |
| Msa0037880 | Msa0639820 | 0.801519 | 8.665320e-49 | -8.615850e-47 |
| Msa0639820 | Msa0653490 | 0.804055 | 2.595932e-49 | -8.615850e-47 |
| Msa0639820 | Msa0663920 | 0.803914 | 2.776955e-49 | -8.615850e-47 |
| Msa0639820 | Msa0673460 | 0.803663 | 3.131206e-49 | -8.615850e-47 |
| Msa0639820 | Msa0731180 | 0.802734 | 4.873519e-49 | -8.615850e-47 |
| Msa0639820 | Msa0743720 | 0.805408 | 1.354032e-49 | -8.615850e-47 |
| Msa0639820 | Msa0771720 | 0.823852 | 1.108071e-53 | -8.615850e-47 |
| Msa0639820 | Msa0845000 | 0.806102 | 9.684244e-50 | -8.615850e-47 |
| Msa0639820 | Msa0877410 | 0.800529 | 1.380939e-48 | -8.615850e-47 |
| Msa0639820 | Msa0927670 | 0.803120 | 4.056611e-49 | -8.615850e-47 |
| Msa0639820 | Msa0999040 | 0.800461 | 1.426001e-48 | -8.615850e-47 |
| Msa0639820 | Msa1023920 | 0.812585 | 3.938034e-51 | -8.615850e-47 |
| Msa0639820 | Msa1059570 | 0.806694 | 7.264200e-50 | -8.615850e-47 |
| Msa0639820 | Msa1062920 | 0.805386 | 1.369006e-49 | -8.615850e-47 |
| Msa0639820 | Msa1082500 | 0.813502 | 2.477929e-51 | -8.615850e-47 |
| Msa0639820 | Msa1097840 | 0.807512 | 4.875315e-50 | -8.615850e-47 |
| Msa0639820 | Msa1107900 | 0.805126 | 1.551875e-49 | -8.615850e-47 |
| Msa0639820 | Msa1172670 | 0.812341 | 4.451663e-51 | -8.615850e-47 |
| Msa0639820 | Msa1174040 | 0.814035 | 1.891540e-51 | -8.615850e-47 |
| Msa0639820 | Msa1217810 | 0.801740 | 7.808686e-49 | -8.615850e-47 |
| Msa0639820 | Msa1217830 | 0.813182 | 2.913682e-51 | -8.615850e-47 |
| Msa0639820 | Msa1233890 | 0.802210 | 6.249284e-49 | -8.615850e-47 |
| Msa0639820 | Msa1292400 | 0.808241 | 3.412388e-50 | -8.615850e-47 |
| Msa0639820 | Msa1305340 | 0.806274 | 8.905646e-50 | -8.615850e-47 |
| Msa0639820 | Msa1359040 | 0.801338 | 9.440400e-49 | -8.615850e-47 |
| Msa0639820 | Msa1392260 | 0.803900 | 2.795831e-49 | -8.615850e-47 |
| Msa0639820 | Msa1427230 | 0.801934 | 7.122537e-49 | -8.615850e-47 |
| Msa0639820 | Msa1466730 | 0.814933 | 1.196909e-51 | -8.615850e-47 |
| Msa0205510 | Msa0639820 | 0.802627 | 5.127759e-49 | -8.615850e-47 |
| Msa0220440 | Msa0639820 | 0.801571 | 8.455004e-49 | -8.615850e-47 |
| Msa0220580 | Msa0639820 | 0.802066 | 6.693101e-49 | -8.615850e-47 |
| Msa0226890 | Msa0639820 | 0.807774 | 4.289016e-50 | -8.615850e-47 |
| Msa0379640 | Msa0639820 | 0.806463 | 8.126502e-50 | -8.615850e-47 |
| Msa0398710 | Msa0639820 | 0.800666 | 1.295121e-48 | -8.615850e-47 |
| Msa0466390 | Msa0639820 | 0.823417 | 1.400872e-53 | -8.615850e-47 |
| Msa0281260 | Msa0639820 | 0.804240 | 2.375799e-49 | -8.615850e-47 |
| Msa0309550 | Msa0639820 | 0.810390 | 1.180530e-50 | -8.615850e-47 |
| Msa0315290 | Msa0639820 | 0.800911 | 1.154078e-48 | -8.615850e-47 |
| Msa0344910 | Msa0639820 | 0.815931 | 7.177326e-52 | -8.615850e-47 |
| Msa0344980 | Msa0639820 | 0.813052 | 3.110395e-51 | -8.615850e-47 |
| Msa0484780 | Msa0639820 | 0.802042 | 6.767457e-49 | -8.615850e-47 |
| Msa0536220 | Msa0639820 | 0.803459 | 3.450965e-49 | -8.615850e-47 |
| Msa0599040 | Msa0639820 | 0.872948 | 2.148080e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0639820 | MtrunA17_Chr4g0022871 | 80.535 | 411 | 80 | 0 | 4 | 414 | 4 | 414 | 0.0 | 677 |
| Msa0639820 | MtrunA17_Chr4g0022801 | 89.646 | 396 | 13 | 1 | 47 | 414 | 10 | 405 | 0.0 | 662 |
| Msa0639820 | MtrunA17_Chr2g0323381 | 77.295 | 414 | 94 | 0 | 1 | 414 | 1 | 414 | 0.0 | 644 |
| Msa0639820 | MtrunA17_Chr4g0022861 | 76.633 | 398 | 93 | 0 | 17 | 414 | 1 | 398 | 0.0 | 625 |
| Msa0639820 | MtrunA17_Chr2g0280991 | 70.098 | 408 | 120 | 1 | 7 | 412 | 14 | 421 | 0.0 | 580 |
| Msa0639820 | MtrunA17_Chr2g0280971 | 67.322 | 407 | 132 | 1 | 7 | 412 | 35 | 441 | 0.0 | 555 |
| Msa0639820 | MtrunA17_Chr8g0335821 | 58.516 | 364 | 147 | 2 | 52 | 412 | 2 | 364 | 2.49e-137 | 397 |
| Msa0639820 | MtrunA17_Chr1g0184961 | 73.622 | 254 | 55 | 2 | 47 | 293 | 104 | 352 | 6.02e-126 | 368 |
| Msa0639820 | MtrunA17_Chr4g0020331 | 33.253 | 415 | 237 | 12 | 11 | 410 | 26 | 415 | 1.87e-55 | 188 |
| Msa0639820 | MtrunA17_Chr2g0280961 | 61.905 | 126 | 47 | 1 | 244 | 368 | 106 | 231 | 2.59e-46 | 159 |
| Msa0639820 | MtrunA17_Chr2g0280961 | 56.180 | 89 | 39 | 0 | 52 | 140 | 2 | 90 | 2.21e-24 | 100 |
| Msa0639820 | MtrunA17_Chr3g0103741 | 30.730 | 397 | 246 | 8 | 23 | 410 | 47 | 423 | 1.68e-45 | 162 |
| Msa0639820 | MtrunA17_Chr4g0063911 | 29.040 | 427 | 247 | 14 | 4 | 410 | 8 | 398 | 3.51e-40 | 147 |
| Msa0639820 | MtrunA17_Chr1g0184971 | 73.016 | 63 | 17 | 0 | 296 | 358 | 2 | 64 | 3.61e-25 | 98.6 |
| Msa0639820 | MtrunA17_Chr4g0022811 | 95.455 | 44 | 2 | 0 | 3 | 46 | 1 | 44 | 6.70e-24 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0639820 | AT4G05120.1 | 68.460 | 409 | 128 | 1 | 4 | 412 | 7 | 414 | 0.0 | 577 |
| Msa0639820 | AT4G05120.2 | 68.460 | 409 | 128 | 1 | 4 | 412 | 7 | 414 | 0.0 | 577 |
| Msa0639820 | AT4G05110.3 | 65.281 | 409 | 141 | 1 | 4 | 412 | 7 | 414 | 0.0 | 553 |
| Msa0639820 | AT4G05110.1 | 65.281 | 409 | 141 | 1 | 4 | 412 | 7 | 414 | 0.0 | 553 |
| Msa0639820 | AT4G05110.2 | 65.037 | 409 | 142 | 1 | 4 | 412 | 7 | 414 | 0.0 | 552 |
| Msa0639820 | AT4G05140.1 | 64.059 | 409 | 147 | 0 | 4 | 412 | 7 | 415 | 0.0 | 543 |
| Msa0639820 | AT4G05130.1 | 63.260 | 411 | 150 | 1 | 4 | 414 | 7 | 416 | 0.0 | 541 |
| Msa0639820 | AT3G09990.1 | 62.683 | 410 | 150 | 2 | 6 | 414 | 10 | 417 | 0.0 | 532 |
| Msa0639820 | AT1G61630.1 | 61.557 | 411 | 155 | 2 | 4 | 412 | 5 | 414 | 0.0 | 514 |
| Msa0639820 | AT1G70330.1 | 29.268 | 410 | 252 | 8 | 16 | 410 | 64 | 450 | 4.15e-50 | 176 |
| Msa0639820 | AT1G02630.1 | 29.187 | 418 | 254 | 10 | 1 | 410 | 6 | 389 | 2.51e-46 | 164 |
| Msa0639820 | AT1G02630.2 | 28.169 | 213 | 150 | 3 | 1 | 212 | 6 | 216 | 7.04e-24 | 102 |
Find 106 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGCAGTCTTGTACTGATTT+TGG | 0.152135 | 4_3:+36707054 | None:intergenic |
| GTACTTCACGATTGGTAATT+TGG | 0.154465 | 4_3:+36706285 | None:intergenic |
| GTATATCAGCCATTTATATT+TGG | 0.187219 | 4_3:-36707106 | Msa0639820:CDS |
| ATATTCTTGACATCATTCTT+AGG | 0.193217 | 4_3:-36705649 | Msa0639820:CDS |
| CTTCTTGGAGGTCTATTTGC+AGG | 0.236906 | 4_3:-36705442 | Msa0639820:CDS |
| CCACCATTCCGCCTTGTATA+TGG | 0.254233 | 4_3:+36706806 | None:intergenic |
| ATTTGGAACACAAGCAATAT+TGG | 0.269430 | 4_3:-36707089 | Msa0639820:CDS |
| CTTGACTGGCTATGGTTAAT+AGG | 0.280707 | 4_3:-36705412 | Msa0639820:CDS |
| TTTGCTGGTTTCTTGGCATT+GGG | 0.292449 | 4_3:-36708632 | Msa0639820:CDS |
| GATACTGGATCACACACTTT+AGG | 0.294912 | 4_3:-36705944 | Msa0639820:CDS |
| GCTTGTGTTCCAAATATAAA+TGG | 0.295680 | 4_3:+36707097 | None:intergenic |
| CATGCTTCCGGAATTCATTC+AGG | 0.308853 | 4_3:-36706770 | Msa0639820:intron |
| ATTTGCTGGTTTCTTGGCAT+TGG | 0.318253 | 4_3:-36708633 | Msa0639820:CDS |
| TGCATAGTTAGTGGTGTCTT+TGG | 0.318694 | 4_3:-36706841 | Msa0639820:CDS |
| TGCAGAAATACCATCCTTCT+AGG | 0.326458 | 4_3:-36707141 | Msa0639820:intron |
| GAATTATAAATATTTAACTA+TGG | 0.331020 | 4_3:-36705286 | Msa0639820:three_prime_UTR |
| ATGTTAATGTTGTGTCTTCT+TGG | 0.334137 | 4_3:-36705457 | Msa0639820:CDS |
| TACTTCACGATTGGTAATTT+GGG | 0.335339 | 4_3:+36706286 | None:intergenic |
| TTGTTGCAGTCGTTCCTTGC+TGG | 0.335887 | 4_3:-36706673 | Msa0639820:intron |
| AAGATCAGCTGTAACAGTTT+TGG | 0.342976 | 4_3:+36706234 | None:intergenic |
| TGAAGTGAATTAAGCATCTA+AGG | 0.353710 | 4_3:-36708782 | Msa0639820:five_prime_UTR |
| TTACTATATTTACTTGTTCC+CGG | 0.355375 | 4_3:-36708571 | Msa0639820:intron |
| ATACTGGATCACACACTTTA+GGG | 0.355537 | 4_3:-36705943 | Msa0639820:CDS |
| ACAATGTTAGCACATATATT+AGG | 0.355997 | 4_3:+36705993 | None:intergenic |
| ATGGTGATTTGCTGGTTTCT+TGG | 0.368089 | 4_3:-36708639 | Msa0639820:CDS |
| AGACCTGTCTTACATGCTTC+CGG | 0.398247 | 4_3:-36706782 | Msa0639820:CDS |
| TCACTACAGCTGTAATTTCT+CGG | 0.399225 | 4_3:-36705729 | Msa0639820:CDS |
| GGGACCTGAACAAAATGCTT+TGG | 0.400480 | 4_3:-36705485 | Msa0639820:CDS |
| CTTGCTGGTTCTGCAGCGTC+TGG | 0.403809 | 4_3:-36706658 | Msa0639820:CDS |
| AGACCCACCTTGTAACCTTT+AGG | 0.407785 | 4_3:+36705583 | None:intergenic |
| ATGCAGCAATGGTGATTTGC+TGG | 0.414070 | 4_3:-36708647 | Msa0639820:CDS |
| TAGCCAAATGTACAAAATGA+TGG | 0.415398 | 4_3:-36708858 | None:intergenic |
| ATTGGTATATGCATAGTTAG+TGG | 0.422297 | 4_3:-36706850 | Msa0639820:CDS |
| CACCATTCCGCCTTGTATAT+GGG | 0.424233 | 4_3:+36706807 | None:intergenic |
| TATTCTTGACATCATTCTTA+GGG | 0.429143 | 4_3:-36705648 | Msa0639820:CDS |
| CAAAGTATGGTAAGCAGGGC+TGG | 0.429657 | 4_3:-36705675 | Msa0639820:CDS |
| CATGGAAGATTCAAAACAAC+AGG | 0.436749 | 4_3:-36706074 | Msa0639820:CDS |
| ACAGCTGATCTTGCTGCAGC+TGG | 0.441389 | 4_3:-36706223 | Msa0639820:CDS |
| TTCTTGGAGGTCTATTTGCA+GGG | 0.442770 | 4_3:-36705441 | Msa0639820:CDS |
| GGCTTCTTATCAGAAGATAC+TGG | 0.444567 | 4_3:-36705959 | Msa0639820:CDS |
| GGACCTGAACAAAATGCTTT+GGG | 0.445382 | 4_3:-36705484 | Msa0639820:CDS |
| GTACTATGTCAGGTGAGGTC+TGG | 0.446753 | 4_3:+36706197 | None:intergenic |
| TAGTTGGATTTAGCAACATC+TGG | 0.449427 | 4_3:-36706895 | Msa0639820:CDS |
| CACCGCAAAGTATGGTAAGC+AGG | 0.454790 | 4_3:-36705680 | Msa0639820:CDS |
| GCACATTGTTCACAAATAGA+TGG | 0.460153 | 4_3:-36705341 | Msa0639820:three_prime_UTR |
| ATGCTGACCTGAATGAATTC+CGG | 0.461203 | 4_3:+36706763 | None:intergenic |
| GCCCTGCTTACCATACTTTG+CGG | 0.464646 | 4_3:+36705678 | None:intergenic |
| ACAATGGTAAGCACCCTAGA+AGG | 0.465663 | 4_3:+36707127 | None:intergenic |
| GTATCTTCTGATAAGAAGCC+GGG | 0.471084 | 4_3:+36705962 | None:intergenic |
| TTAATGTTGTGTCTTCTTGG+AGG | 0.472371 | 4_3:-36705454 | Msa0639820:CDS |
| ACATCTGGTAAAGGAGGGAT+TGG | 0.484610 | 4_3:-36706880 | Msa0639820:CDS |
| AAAAGAAACAGTACTATGTC+AGG | 0.486807 | 4_3:+36706187 | None:intergenic |
| ACTCGTGAAAATCTTGAAGA+TGG | 0.489152 | 4_3:-36705767 | Msa0639820:CDS |
| ACAAGACTGCGGAACCTGTT+CGG | 0.491522 | 4_3:-36707043 | Msa0639820:CDS |
| AAACGACAGTGTATCCGAAC+AGG | 0.499026 | 4_3:+36707029 | None:intergenic |
| GCCGCGTTTGAGAATTCTCC+TGG | 0.506870 | 4_3:-36706601 | Msa0639820:CDS |
| TGCTGGTTTCTTGGCATTGG+GGG | 0.514420 | 4_3:-36708630 | Msa0639820:CDS |
| TTGCAGGGGTAACACTTGAC+TGG | 0.516302 | 4_3:-36705426 | Msa0639820:CDS |
| TGGCTATGGTTAATAGGTAA+AGG | 0.519736 | 4_3:-36705406 | Msa0639820:CDS |
| GAACGGTAGTACTTCACGAT+TGG | 0.520220 | 4_3:+36706277 | None:intergenic |
| TTGCTGGTTTCTTGGCATTG+GGG | 0.520379 | 4_3:-36708631 | Msa0639820:CDS |
| TCACTTCAATCAATCAAGAA+AGG | 0.520780 | 4_3:+36708797 | None:intergenic |
| CTTCGGAGGCTGCTTTCGAA+CGG | 0.527518 | 4_3:+36706260 | None:intergenic |
| TTCTGCACCTAAAGGTTACA+AGG | 0.528109 | 4_3:-36705590 | Msa0639820:intron |
| GATTTAGCAACATCTGGTAA+AGG | 0.531613 | 4_3:-36706889 | Msa0639820:CDS |
| CATATACAAGGCGGAATGGT+GGG | 0.535308 | 4_3:-36706805 | Msa0639820:CDS |
| GGGTAACACTTGACTGGCTA+TGG | 0.535952 | 4_3:-36705420 | Msa0639820:CDS |
| CGTTCGAAAGCAGCCTCCGA+AGG | 0.538878 | 4_3:-36706259 | Msa0639820:CDS |
| AGTATCTTCTGATAAGAAGC+CGG | 0.542203 | 4_3:+36705961 | None:intergenic |
| GCTCCTTTGCGAAGACCACC+AGG | 0.551931 | 4_3:+36706583 | None:intergenic |
| ACAGATAGTGAGGTAACCAT+TGG | 0.553661 | 4_3:+36705621 | None:intergenic |
| TATGGTTAATAGGTAAAGGA+TGG | 0.554780 | 4_3:-36705402 | Msa0639820:CDS |
| AGCAATATTGGCTTACAATG+AGG | 0.563692 | 4_3:-36707077 | Msa0639820:CDS |
| ATAGCTGATGCCCATATACA+AGG | 0.577441 | 4_3:-36706817 | Msa0639820:CDS |
| ATTCCGGAAGCATGTAAGAC+AGG | 0.580637 | 4_3:+36706779 | None:intergenic |
| TTAGCAACATCTGGTAAAGG+AGG | 0.580672 | 4_3:-36706886 | Msa0639820:CDS |
| TGAGACTCCACCACGTCTTG+AGG | 0.583689 | 4_3:-36708743 | Msa0639820:intron |
| TGCCCATATACAAGGCGGAA+TGG | 0.587617 | 4_3:-36706809 | Msa0639820:CDS |
| TCATTCTTAGGGTTATCCAA+TGG | 0.594998 | 4_3:-36705637 | Msa0639820:CDS |
| TTAAGCATCTAAGGTAGCCA+TGG | 0.598033 | 4_3:-36708773 | Msa0639820:exon |
| GCAGGGCAAATATGCAGCAA+TGG | 0.599931 | 4_3:-36708658 | Msa0639820:intron |
| GCAGAAATACCATCCTTCTA+GGG | 0.600947 | 4_3:-36707140 | Msa0639820:intron |
| CATTGTTCACAAATAGATGG+TGG | 0.601492 | 4_3:-36705338 | Msa0639820:three_prime_UTR |
| ACCGCAAAGTATGGTAAGCA+GGG | 0.604384 | 4_3:-36705679 | Msa0639820:CDS |
| CCATATACAAGGCGGAATGG+TGG | 0.604392 | 4_3:-36706806 | Msa0639820:CDS |
| AAAGGAAGAAACCTTTGTCA+AGG | 0.606512 | 4_3:+36708815 | None:intergenic |
| TCTTGGAGGTCTATTTGCAG+GGG | 0.607411 | 4_3:-36705440 | Msa0639820:CDS |
| TCTCCTGGTGGTCTTCGCAA+AGG | 0.610206 | 4_3:-36706586 | Msa0639820:CDS |
| TAGCAACATCTGGTAAAGGA+GGG | 0.612233 | 4_3:-36706885 | Msa0639820:CDS |
| TATAAATGGCTGATATACAA+TGG | 0.614615 | 4_3:+36707111 | None:intergenic |
| AAGTGAAAACACAGATAGTG+AGG | 0.626913 | 4_3:+36705611 | None:intergenic |
| TGGTAAGCACCCTAGAAGGA+TGG | 0.634640 | 4_3:+36707131 | None:intergenic |
| CAGACGCTGCAGAACCAGCA+AGG | 0.638516 | 4_3:+36706659 | None:intergenic |
| TCAAAACAACAGGATCGCAA+AGG | 0.642728 | 4_3:-36706064 | Msa0639820:CDS |
| GATCACACACTTTAGGGACC+TGG | 0.645531 | 4_3:-36705937 | Msa0639820:intron |
| AAACAGTACTATGTCAGGTG+AGG | 0.652969 | 4_3:+36706192 | None:intergenic |
| TTTGCGGTGAAATAAAACGC+TGG | 0.660087 | 4_3:+36705694 | None:intergenic |
| TATATTACCTCAAGACGTGG+TGG | 0.674673 | 4_3:+36708736 | None:intergenic |
| TATCTTCTGATAAGAAGCCG+GGG | 0.689994 | 4_3:+36705963 | None:intergenic |
| TGGAGTCTCACTGATGACCA+TGG | 0.695742 | 4_3:+36708756 | None:intergenic |
| GCGTTTGAGAATTCTCCTGG+TGG | 0.696893 | 4_3:-36706598 | Msa0639820:CDS |
| ACCAGGAGAATTCTCAAACG+CGG | 0.707033 | 4_3:+36706600 | None:intergenic |
| TTATATATTACCTCAAGACG+TGG | 0.729092 | 4_3:+36708733 | None:intergenic |
| CCAAAATCAGTACAAGACTG+CGG | 0.733677 | 4_3:-36707054 | Msa0639820:CDS |
| AAGATCAAACACATTAAACG+TGG | 0.738203 | 4_3:+36705807 | None:intergenic |
| GCTGATGCCCATATACAAGG+CGG | 0.752747 | 4_3:-36706814 | Msa0639820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAAAAACTTTTATTCAA+AGG | + | chr4_3:36706947-36706966 | None:intergenic | 10.0% |
| !! | GAATTATAAATATTTAACTA+TGG | - | chr4_3:36708836-36708855 | Msa0639820:five_prime_UTR | 10.0% |
| !! | ATTGTAAAATCTTAAGATTT+GGG | + | chr4_3:36706498-36706517 | None:intergenic | 15.0% |
| !! | TATTGTAAAATCTTAAGATT+TGG | + | chr4_3:36706499-36706518 | None:intergenic | 15.0% |
| !!! | AAAATTATTGAGTTTGTTAA+AGG | + | chr4_3:36706599-36706618 | None:intergenic | 15.0% |
| !!! | TAACAAACTCAATAATTTTA+AGG | - | chr4_3:36706600-36706619 | Msa0639820:CDS | 15.0% |
| !!! | ATAATTTTAAGGAAAAATGT+AGG | - | chr4_3:36706611-36706630 | Msa0639820:CDS | 15.0% |
| !!! | TAATTTTAAGGAAAAATGTA+GGG | - | chr4_3:36706612-36706631 | Msa0639820:CDS | 15.0% |
| !! | GATATCAAATTTAACAATAA+AGG | - | chr4_3:36706725-36706744 | Msa0639820:intron | 15.0% |
| !!! | TGTATGTTTTTTTATTTTGT+AGG | - | chr4_3:36708616-36708635 | Msa0639820:CDS | 15.0% |
| !!! | GTATGTTTTTTTATTTTGTA+GGG | - | chr4_3:36708617-36708636 | Msa0639820:CDS | 15.0% |
| !! | TGAGAAAATAGATAAATTAC+CGG | + | chr4_3:36705573-36705592 | None:intergenic | 20.0% |
| !!! | ATTTAAAGTTTTAAACCATG+AGG | - | chr4_3:36706193-36706212 | Msa0639820:intron | 20.0% |
| !! | TGTTATCAAAATAACAATCT+GGG | + | chr4_3:36706649-36706668 | None:intergenic | 20.0% |
| !! | ATGTTATCAAAATAACAATC+TGG | + | chr4_3:36706650-36706669 | None:intergenic | 20.0% |
| !! | TCAACATATACATTTGATAA+TGG | - | chr4_3:36707421-36707440 | Msa0639820:intron | 20.0% |
| !! | TGTATATGCTATATAGTTTA+AGG | + | chr4_3:36707674-36707693 | None:intergenic | 20.0% |
| !! | TAATCTGAATCTTAACAATT+AGG | + | chr4_3:36707998-36708017 | None:intergenic | 20.0% |
| !!! | TTTTTTTATGACCTTGACAA+AGG | - | chr4_3:36705296-36705315 | Msa0639820:three_prime_UTR | 25.0% |
| ! | ATTTGTGGATTTCAATTCTT+TGG | - | chr4_3:36705435-36705454 | Msa0639820:CDS | 25.0% |
| !!! | GATTTCAATTCTTTGGAATT+TGG | - | chr4_3:36705442-36705461 | Msa0639820:CDS | 25.0% |
| ! | TTACTATATTTACTTGTTCC+CGG | - | chr4_3:36705551-36705570 | Msa0639820:intron | 25.0% |
| ! | GAGAAAATAGATAAATTACC+GGG | + | chr4_3:36705572-36705591 | None:intergenic | 25.0% |
| ! | ATTTGATAGAAACATGAAAG+TGG | + | chr4_3:36705687-36705706 | None:intergenic | 25.0% |
| !!! | GTAAATAAGAGTGTTTTATG+TGG | - | chr4_3:36706169-36706188 | Msa0639820:intron | 25.0% |
| !! | TAAGCCAATTCTTTGAATTT+TGG | + | chr4_3:36706550-36706569 | None:intergenic | 25.0% |
| !! | AAAATAACAATCTGGGATAT+TGG | + | chr4_3:36706642-36706661 | None:intergenic | 25.0% |
| ! | TATAAATGGCTGATATACAA+TGG | + | chr4_3:36707014-36707033 | None:intergenic | 25.0% |
| ! | GTATATCAGCCATTTATATT+TGG | - | chr4_3:36707016-36707035 | Msa0639820:CDS | 25.0% |
| ! | AAGTATACAAACAAATGAAC+AGG | + | chr4_3:36707151-36707170 | None:intergenic | 25.0% |
| ! | AACATAAATGCATATTCTAG+AGG | + | chr4_3:36707179-36707198 | None:intergenic | 25.0% |
| ! | CAATTGTAATTACTACTATG+AGG | - | chr4_3:36707384-36707403 | Msa0639820:intron | 25.0% |
| ! | GACAATAATACAAAACTTTG+AGG | + | chr4_3:36707633-36707652 | None:intergenic | 25.0% |
| ! | AAGCTCAAAAAATGATGATA+TGG | + | chr4_3:36707786-36707805 | None:intergenic | 25.0% |
| ! | ACAATGTTAGCACATATATT+AGG | + | chr4_3:36708132-36708151 | None:intergenic | 25.0% |
| ! | ATATACACAATGTAGAACAA+AGG | + | chr4_3:36708234-36708253 | None:intergenic | 25.0% |
| ! | TTGATATTTCCATTTGTTTC+AGG | - | chr4_3:36708273-36708292 | Msa0639820:intron | 25.0% |
| ! | ATATTCTTGACATCATTCTT+AGG | - | chr4_3:36708473-36708492 | Msa0639820:intron | 25.0% |
| ! | TATTCTTGACATCATTCTTA+GGG | - | chr4_3:36708474-36708493 | Msa0639820:intron | 25.0% |
| !!! | TTAAGGAGCATAAACTTTTA+AGG | - | chr4_3:36708563-36708582 | Msa0639820:intron | 25.0% |
| !!! | TAAGGAGCATAAACTTTTAA+GGG | - | chr4_3:36708564-36708583 | Msa0639820:intron | 25.0% |
| ! | AACAAGCTAAACTAGAAAAA+TGG | - | chr4_3:36708753-36708772 | Msa0639820:CDS | 25.0% |
| TCACTTCAATCAATCAAGAA+AGG | + | chr4_3:36705328-36705347 | None:intergenic | 30.0% | |
| TGAAGTGAATTAAGCATCTA+AGG | - | chr4_3:36705340-36705359 | Msa0639820:three_prime_UTR | 30.0% | |
| TTATATATTACCTCAAGACG+TGG | + | chr4_3:36705392-36705411 | None:intergenic | 30.0% | |
| AAACAGACATGCAATATTTG+TGG | - | chr4_3:36705420-36705439 | Msa0639820:CDS | 30.0% | |
| TTTAGTTGAAACCTTAGTCA+AGG | - | chr4_3:36705600-36705619 | Msa0639820:CDS | 30.0% | |
| ! | TAGTTTCCTGAATTTGAGAT+GGG | - | chr4_3:36705654-36705673 | Msa0639820:CDS | 30.0% |
| !! | CAATAAAAGCACCAATTGTT+GGG | + | chr4_3:36705769-36705788 | None:intergenic | 30.0% |
| !! | TCAATAAAAGCACCAATTGT+TGG | + | chr4_3:36705770-36705789 | None:intergenic | 30.0% |
| TTCACTCACCTATTAGTATT+CGG | + | chr4_3:36705842-36705861 | None:intergenic | 30.0% | |
| !! | CAATAAAAGCACCAATTGTT+GGG | + | chr4_3:36705769-36705788 | None:intergenic | 30.0% |
| !! | TCAATAAAAGCACCAATTGT+TGG | + | chr4_3:36705770-36705789 | None:intergenic | 30.0% |
| TTCACTCACCTATTAGTATT+CGG | + | chr4_3:36705842-36705861 | None:intergenic | 30.0% | |
| AAATTCTAACAGTTCCATGT+TGG | - | chr4_3:36706267-36706286 | Msa0639820:CDS | 30.0% | |
| TACCTAAAAACGTGTTTACA+TGG | - | chr4_3:36706299-36706318 | Msa0639820:CDS | 30.0% | |
| TGAGATATGACATGAAAATG+TGG | - | chr4_3:36706423-36706442 | Msa0639820:intron | 30.0% | |
| GAGATATGACATGAAAATGT+GGG | - | chr4_3:36706424-36706443 | Msa0639820:intron | 30.0% | |
| AAAATCTTAAGATTTGGGCT+GGG | + | chr4_3:36706493-36706512 | None:intergenic | 30.0% | |
| TAAAATCTTAAGATTTGGGC+TGG | + | chr4_3:36706494-36706513 | None:intergenic | 30.0% | |
| CTGACCAAAATTCAAAGAAT+TGG | - | chr4_3:36706543-36706562 | Msa0639820:intron | 30.0% | |
| AAGCACTTAACATTGAACTA+AGG | + | chr4_3:36706693-36706712 | None:intergenic | 30.0% | |
| AATGTTCTGTTCAGAAAGTT+TGG | + | chr4_3:36706808-36706827 | None:intergenic | 30.0% | |
| GCTTGTGTTCCAAATATAAA+TGG | + | chr4_3:36707028-36707047 | None:intergenic | 30.0% | |
| ! | ATTTGGAACACAAGCAATAT+TGG | - | chr4_3:36707033-36707052 | Msa0639820:CDS | 30.0% |
| ATTGGTATATGCATAGTTAG+TGG | - | chr4_3:36707272-36707291 | Msa0639820:intron | 30.0% | |
| CATTGAAGAGTTAAACATAC+TGG | + | chr4_3:36707564-36707583 | None:intergenic | 30.0% | |
| TAACTCTTCAATGCTTAGTT+TGG | - | chr4_3:36707571-36707590 | Msa0639820:intron | 30.0% | |
| TAATGACAAATAATCACCGT+GGG | + | chr4_3:36707718-36707737 | None:intergenic | 30.0% | |
| ATAATGACAAATAATCACCG+TGG | + | chr4_3:36707719-36707738 | None:intergenic | 30.0% | |
| ! | TACTTCACGATTGGTAATTT+GGG | + | chr4_3:36707839-36707858 | None:intergenic | 30.0% |
| AAAAGAAACAGTACTATGTC+AGG | + | chr4_3:36707938-36707957 | None:intergenic | 30.0% | |
| ATATGTGATGATTTAAGAGC+TGG | - | chr4_3:36708250-36708269 | Msa0639820:intron | 30.0% | |
| AAGATCAAACACATTAAACG+TGG | + | chr4_3:36708318-36708337 | None:intergenic | 30.0% | |
| !! | TTTTATTTCACCGCAAAGTA+TGG | - | chr4_3:36708434-36708453 | Msa0639820:intron | 30.0% |
| !! | AAGGAGCATAAACTTTTAAG+GGG | - | chr4_3:36708565-36708584 | Msa0639820:intron | 30.0% |
| ATGTTAATGTTGTGTCTTCT+TGG | - | chr4_3:36708665-36708684 | Msa0639820:intron | 30.0% | |
| TATGGTTAATAGGTAAAGGA+TGG | - | chr4_3:36708720-36708739 | Msa0639820:intron | 30.0% | |
| CTAAACTAGAAAAATGGCAT+AGG | - | chr4_3:36708759-36708778 | Msa0639820:exon | 30.0% | |
| AAAGGAAGAAACCTTTGTCA+AGG | + | chr4_3:36705310-36705329 | None:intergenic | 35.0% | |
| !! | TCAATTCTTTGGAATTTGGC+AGG | - | chr4_3:36705446-36705465 | Msa0639820:CDS | 35.0% |
| !! | CAATTCTTTGGAATTTGGCA+GGG | - | chr4_3:36705447-36705466 | Msa0639820:CDS | 35.0% |
| CTAGTTTCCTGAATTTGAGA+TGG | - | chr4_3:36705653-36705672 | Msa0639820:CDS | 35.0% | |
| ! | CACTCTTATTTAGTCGATGT+GGG | + | chr4_3:36705739-36705758 | None:intergenic | 35.0% |
| AGTGCTTAAATCCCAACAAT+TGG | - | chr4_3:36705755-36705774 | Msa0639820:CDS | 35.0% | |
| !! | TTGGTGCTTTTATTGAGAGT+TGG | - | chr4_3:36705774-36705793 | Msa0639820:CDS | 35.0% |
| AGTGCTTAAATCCCAACAAT+TGG | - | chr4_3:36705755-36705774 | Msa0639820:CDS | 35.0% | |
| !! | TTGGTGCTTTTATTGAGAGT+TGG | - | chr4_3:36705774-36705793 | Msa0639820:CDS | 35.0% |
| ! | CACTCTTATTTACTCGATGT+GGG | + | chr4_3:36706162-36706181 | None:intergenic | 35.0% |
| ! | ACACTCTTATTTACTCGATG+TGG | + | chr4_3:36706163-36706182 | None:intergenic | 35.0% |
| TGTTAGAATTTAAGCCCATG+AGG | + | chr4_3:36706258-36706277 | None:intergenic | 35.0% | |
| AGGTAAAAACTCATCCAACA+TGG | + | chr4_3:36706284-36706303 | None:intergenic | 35.0% | |
| ! | CACCATGTAAACACGTTTTT+AGG | + | chr4_3:36706304-36706323 | None:intergenic | 35.0% |
| CTAAAAACGTGTTTACATGG+TGG | - | chr4_3:36706302-36706321 | Msa0639820:CDS | 35.0% | |
| TCTTACCTCACAAAATCTGT+TGG | - | chr4_3:36706333-36706352 | Msa0639820:CDS | 35.0% | |
| !! | CCAGTTTTGTAAGTTGAGTT+GGG | - | chr4_3:36706467-36706486 | Msa0639820:intron | 35.0% |
| TTCTTCAAATCATACGCATC+TGG | - | chr4_3:36706882-36706901 | Msa0639820:CDS | 35.0% | |
| ! | TATTTCTGCACAAGGAAGAA+AGG | + | chr4_3:36706971-36706990 | None:intergenic | 35.0% |
| !! | AGCAATATTGGCTTACAATG+AGG | - | chr4_3:36707045-36707064 | Msa0639820:CDS | 35.0% |
| !!! | TGTCGTTTTCTTTGGCATTT+TGG | - | chr4_3:36707108-36707127 | Msa0639820:CDS | 35.0% |
| TCCTATTTACTTGCCATAGT+TGG | - | chr4_3:36707211-36707230 | Msa0639820:intron | 35.0% | |
| TCCAACTATGGCAAGTAAAT+AGG | + | chr4_3:36707215-36707234 | None:intergenic | 35.0% | |
| GATGTTGCTAAATCCAACTA+TGG | + | chr4_3:36707227-36707246 | None:intergenic | 35.0% | |
| TAGTTGGATTTAGCAACATC+TGG | - | chr4_3:36707227-36707246 | Msa0639820:intron | 35.0% | |
| GATTTAGCAACATCTGGTAA+AGG | - | chr4_3:36707233-36707252 | Msa0639820:intron | 35.0% | |
| ! | GTACTTCACGATTGGTAATT+TGG | + | chr4_3:36707840-36707859 | None:intergenic | 35.0% |
| !!! | TGTAACAGTTTTGGATCCTT+CGG | + | chr4_3:36707882-36707901 | None:intergenic | 35.0% |
| ! | AAGATCAGCTGTAACAGTTT+TGG | + | chr4_3:36707891-36707910 | None:intergenic | 35.0% |
| GACAAATTGAAAAGGGACAA+AGG | + | chr4_3:36707966-36707985 | None:intergenic | 35.0% | |
| ! | TGTCCCTTTTCAATTTGTCA+CGG | - | chr4_3:36707967-36707986 | Msa0639820:intron | 35.0% |
| TGTCCGTGACAAATTGAAAA+GGG | + | chr4_3:36707973-36707992 | None:intergenic | 35.0% | |
| ATGTCCGTGACAAATTGAAA+AGG | + | chr4_3:36707974-36707993 | None:intergenic | 35.0% | |
| TAACTAATGTGCTTCTTTCC+AGG | - | chr4_3:36708024-36708043 | Msa0639820:intron | 35.0% | |
| CATGGAAGATTCAAAACAAC+AGG | - | chr4_3:36708048-36708067 | Msa0639820:intron | 35.0% | |
| ! | CTAACATTGTCTATTTTCCC+CGG | - | chr4_3:36708142-36708161 | Msa0639820:intron | 35.0% |
| AGTATCTTCTGATAAGAAGC+CGG | + | chr4_3:36708164-36708183 | None:intergenic | 35.0% | |
| ATACTGGATCACACACTTTA+GGG | - | chr4_3:36708179-36708198 | Msa0639820:intron | 35.0% | |
| AAAATGCATATGAACCTACC+AGG | + | chr4_3:36708206-36708225 | None:intergenic | 35.0% | |
| ! | AAGAGCATACCTGAAACAAA+TGG | + | chr4_3:36708285-36708304 | None:intergenic | 35.0% |
| ! | ATCTTCAAGATTTTCACGAG+TGG | + | chr4_3:36708356-36708375 | None:intergenic | 35.0% |
| ACTCGTGAAAATCTTGAAGA+TGG | - | chr4_3:36708355-36708374 | Msa0639820:intron | 35.0% | |
| TCACTACAGCTGTAATTTCT+CGG | - | chr4_3:36708393-36708412 | Msa0639820:intron | 35.0% | |
| TCATTCTTAGGGTTATCCAA+TGG | - | chr4_3:36708485-36708504 | Msa0639820:intron | 35.0% | |
| AAGTGAAAACACAGATAGTG+AGG | + | chr4_3:36708514-36708533 | None:intergenic | 35.0% | |
| !! | TTTCCCAAAGCATTTTGTTC+AGG | + | chr4_3:36708644-36708663 | None:intergenic | 35.0% |
| TTAATGTTGTGTCTTCTTGG+AGG | - | chr4_3:36708668-36708687 | Msa0639820:intron | 35.0% | |
| TGGCTATGGTTAATAGGTAA+AGG | - | chr4_3:36708716-36708735 | Msa0639820:intron | 35.0% | |
| GCACATTGTTCACAAATAGA+TGG | - | chr4_3:36708781-36708800 | Msa0639820:five_prime_UTR | 35.0% | |
| CATTGTTCACAAATAGATGG+TGG | - | chr4_3:36708784-36708803 | Msa0639820:five_prime_UTR | 35.0% | |
| ! | TTAAGCATCTAAGGTAGCCA+TGG | - | chr4_3:36705349-36705368 | Msa0639820:three_prime_UTR | 40.0% |
| TATATTACCTCAAGACGTGG+TGG | + | chr4_3:36705389-36705408 | None:intergenic | 40.0% | |
| !! | ATGGTGATTTGCTGGTTTCT+TGG | - | chr4_3:36705483-36705502 | Msa0639820:CDS | 40.0% |
| !! | ATTTGCTGGTTTCTTGGCAT+TGG | - | chr4_3:36705489-36705508 | Msa0639820:intron | 40.0% |
| !! | TTTGCTGGTTTCTTGGCATT+GGG | - | chr4_3:36705490-36705509 | Msa0639820:intron | 40.0% |
| ! | GCACTCTTATTTAGTCGATG+TGG | + | chr4_3:36705740-36705759 | None:intergenic | 40.0% |
| TTGAGAGTTGGAACACAGAA+AGG | - | chr4_3:36705786-36705805 | Msa0639820:CDS | 40.0% | |
| TGAGAGTTGGAACACAGAAA+GGG | - | chr4_3:36705787-36705806 | Msa0639820:CDS | 40.0% | |
| GTTACCTCTAGTCTGGATTA+AGG | - | chr4_3:36705809-36705828 | Msa0639820:CDS | 40.0% | |
| AACACCTTAATCCAGACTAG+AGG | + | chr4_3:36705816-36705835 | None:intergenic | 40.0% | |
| GTGTTCCACCGAATACTAAT+AGG | - | chr4_3:36705831-36705850 | Msa0639820:intron | 40.0% | |
| ACTCACCTATTAGTATTCGG+TGG | + | chr4_3:36705839-36705858 | None:intergenic | 40.0% | |
| ATAGAGGAAAGGGCTATCAT+CGG | - | chr4_3:36705868-36705887 | Msa0639820:intron | 40.0% | |
| TTGAGAGTTGGAACACAGAA+AGG | - | chr4_3:36705786-36705805 | Msa0639820:CDS | 40.0% | |
| TGAGAGTTGGAACACAGAAA+GGG | - | chr4_3:36705787-36705806 | Msa0639820:CDS | 40.0% | |
| GTTACCTCTAGTCTGGATTA+AGG | - | chr4_3:36705809-36705828 | Msa0639820:CDS | 40.0% | |
| AACACCTTAATCCAGACTAG+AGG | + | chr4_3:36705816-36705835 | None:intergenic | 40.0% | |
| GTGTTCCACCGAATACTAAT+AGG | - | chr4_3:36705831-36705850 | Msa0639820:intron | 40.0% | |
| ACTCACCTATTAGTATTCGG+TGG | + | chr4_3:36705839-36705858 | None:intergenic | 40.0% | |
| ATAGAGGAAAGGGCTATCAT+CGG | - | chr4_3:36705868-36705887 | Msa0639820:intron | 40.0% | |
| ! | CAAAAGACTAGTCCATTAGG+GGG | + | chr4_3:36706224-36706243 | None:intergenic | 40.0% |
| ! | CCAAAAGACTAGTCCATTAG+GGG | + | chr4_3:36706225-36706244 | None:intergenic | 40.0% |
| ! | CCCAAAAGACTAGTCCATTA+GGG | + | chr4_3:36706226-36706245 | None:intergenic | 40.0% |
| !!! | CCCTAATGGACTAGTCTTTT+GGG | - | chr4_3:36706223-36706242 | Msa0639820:CDS | 40.0% |
| ! | ACCCAAAAGACTAGTCCATT+AGG | + | chr4_3:36706227-36706246 | None:intergenic | 40.0% |
| !! | GCCAGTTTTGTAAGTTGAGT+TGG | - | chr4_3:36706466-36706485 | Msa0639820:intron | 40.0% |
| CCCAACTCAACTTACAAAAC+TGG | + | chr4_3:36706470-36706489 | None:intergenic | 40.0% | |
| CACATCGCTAGTGACAATAT+CGG | + | chr4_3:36706912-36706931 | None:intergenic | 40.0% | |
| ! | AAGGATGGTATTTCTGCACA+AGG | + | chr4_3:36706979-36706998 | None:intergenic | 40.0% |
| TGCAGAAATACCATCCTTCT+AGG | - | chr4_3:36706981-36707000 | Msa0639820:intron | 40.0% | |
| GCAGAAATACCATCCTTCTA+GGG | - | chr4_3:36706982-36707001 | Msa0639820:intron | 40.0% | |
| CCAAAATCAGTACAAGACTG+CGG | - | chr4_3:36707068-36707087 | Msa0639820:CDS | 40.0% | |
| !!! | GGATACACTGTCGTTTTCTT+TGG | - | chr4_3:36707100-36707119 | Msa0639820:CDS | 40.0% |
| TTAGCAACATCTGGTAAAGG+AGG | - | chr4_3:36707236-36707255 | Msa0639820:intron | 40.0% | |
| TAGCAACATCTGGTAAAGGA+GGG | - | chr4_3:36707237-36707256 | Msa0639820:intron | 40.0% | |
| ! | GGAGGGATTGGAACTTTTAT+TGG | - | chr4_3:36707254-36707273 | Msa0639820:intron | 40.0% |
| TGCATAGTTAGTGGTGTCTT+TGG | - | chr4_3:36707281-36707300 | Msa0639820:intron | 40.0% | |
| ATAGCTGATGCCCATATACA+AGG | - | chr4_3:36707305-36707324 | Msa0639820:intron | 40.0% | |
| ATGCTGACCTGAATGAATTC+CGG | + | chr4_3:36707362-36707381 | None:intergenic | 40.0% | |
| AAGGACAACAGACACGAAAT+GGG | + | chr4_3:36707655-36707674 | None:intergenic | 40.0% | |
| TAAGGACAACAGACACGAAA+TGG | + | chr4_3:36707656-36707675 | None:intergenic | 40.0% | |
| AACTCTTGTCTTAACTCCCA+CGG | - | chr4_3:36707699-36707718 | Msa0639820:intron | 40.0% | |
| AAACAGTACTATGTCAGGTG+AGG | + | chr4_3:36707933-36707952 | None:intergenic | 40.0% | |
| !! | GTTTTGAATCTTCCATGTCC+TGG | + | chr4_3:36708045-36708064 | None:intergenic | 40.0% |
| TCAAAACAACAGGATCGCAA+AGG | - | chr4_3:36708058-36708077 | Msa0639820:intron | 40.0% | |
| TATCTTCTGATAAGAAGCCG+GGG | + | chr4_3:36708162-36708181 | None:intergenic | 40.0% | |
| GTATCTTCTGATAAGAAGCC+GGG | + | chr4_3:36708163-36708182 | None:intergenic | 40.0% | |
| GGCTTCTTATCAGAAGATAC+TGG | - | chr4_3:36708163-36708182 | Msa0639820:intron | 40.0% | |
| GATACTGGATCACACACTTT+AGG | - | chr4_3:36708178-36708197 | Msa0639820:intron | 40.0% | |
| TTTGCGGTGAAATAAAACGC+TGG | + | chr4_3:36708431-36708450 | None:intergenic | 40.0% | |
| ACAGATAGTGAGGTAACCAT+TGG | + | chr4_3:36708504-36708523 | None:intergenic | 40.0% | |
| ! | GTTTTCACTTCTGCACCTAA+AGG | - | chr4_3:36708524-36708543 | Msa0639820:intron | 40.0% |
| TTCTGCACCTAAAGGTTACA+AGG | - | chr4_3:36708532-36708551 | Msa0639820:intron | 40.0% | |
| GGACCTGAACAAAATGCTTT+GGG | - | chr4_3:36708638-36708657 | Msa0639820:CDS | 40.0% | |
| TTCTTGGAGGTCTATTTGCA+GGG | - | chr4_3:36708681-36708700 | Msa0639820:intron | 40.0% | |
| ! | CTTGACTGGCTATGGTTAAT+AGG | - | chr4_3:36708710-36708729 | Msa0639820:intron | 40.0% |
| ! | ATGCAGCAATGGTGATTTGC+TGG | - | chr4_3:36705475-36705494 | Msa0639820:CDS | 45.0% |
| !! | TTGCTGGTTTCTTGGCATTG+GGG | - | chr4_3:36705491-36705510 | Msa0639820:intron | 45.0% |
| TGCTGCTACAACCTTGACTA+AGG | + | chr4_3:36705614-36705633 | None:intergenic | 45.0% | |
| AGTCGATGTGGGACTATAAC+AGG | + | chr4_3:36705728-36705747 | None:intergenic | 45.0% | |
| AGAAAGGGTTACCTCTAGTC+TGG | - | chr4_3:36705802-36705821 | Msa0639820:CDS | 45.0% | |
| GATGATAGCCCTTTCCTCTA+TGG | + | chr4_3:36705869-36705888 | None:intergenic | 45.0% | |
| TAGAGGAAAGGGCTATCATC+GGG | - | chr4_3:36705869-36705888 | Msa0639820:intron | 45.0% | |
| ! | CACGACGGTTTTCACTCTAT+TGG | + | chr4_3:36705901-36705920 | None:intergenic | 45.0% |
| CAATAGAGTGAAAACCGTCG+TGG | - | chr4_3:36705899-36705918 | Msa0639820:intron | 45.0% | |
| AGAAAGGGTTACCTCTAGTC+TGG | - | chr4_3:36705802-36705821 | Msa0639820:CDS | 45.0% | |
| GATGATAGCCCTTTCCTCTA+TGG | + | chr4_3:36705869-36705888 | None:intergenic | 45.0% | |
| TAGAGGAAAGGGCTATCATC+GGG | - | chr4_3:36705869-36705888 | Msa0639820:intron | 45.0% | |
| ! | CACGACGGTTTTCACTCTAT+TGG | + | chr4_3:36705901-36705920 | None:intergenic | 45.0% |
| CAATAGAGTGAAAACCGTCG+TGG | - | chr4_3:36705899-36705918 | Msa0639820:intron | 45.0% | |
| !!! | CCCCTAATGGACTAGTCTTT+TGG | - | chr4_3:36706222-36706241 | Msa0639820:CDS | 45.0% |
| ! | GTGGACCAACAGATTTTGTG+AGG | + | chr4_3:36706341-36706360 | None:intergenic | 45.0% |
| CTCATACTCAGGACTAAGAG+TGG | + | chr4_3:36706376-36706395 | None:intergenic | 45.0% | |
| CACTCTTAGTCCTGAGTATG+AGG | - | chr4_3:36706374-36706393 | Msa0639820:intron | 45.0% | |
| TCTTAGTCCTGAGTATGAGG+AGG | - | chr4_3:36706377-36706396 | Msa0639820:intron | 45.0% | |
| GTGTGTTGAGAGTCTCACAT+TGG | - | chr4_3:36706399-36706418 | Msa0639820:intron | 45.0% | |
| ACAATGGTAAGCACCCTAGA+AGG | + | chr4_3:36706998-36707017 | None:intergenic | 45.0% | |
| !!! | CCGCAGTCTTGTACTGATTT+TGG | + | chr4_3:36707071-36707090 | None:intergenic | 45.0% |
| AAACGACAGTGTATCCGAAC+AGG | + | chr4_3:36707096-36707115 | None:intergenic | 45.0% | |
| ACATCTGGTAAAGGAGGGAT+TGG | - | chr4_3:36707242-36707261 | Msa0639820:intron | 45.0% | |
| CACCATTCCGCCTTGTATAT+GGG | + | chr4_3:36707318-36707337 | None:intergenic | 45.0% | |
| CATATACAAGGCGGAATGGT+GGG | - | chr4_3:36707317-36707336 | Msa0639820:intron | 45.0% | |
| AGACCTGTCTTACATGCTTC+CGG | - | chr4_3:36707340-36707359 | Msa0639820:intron | 45.0% | |
| ! | ATTCCGGAAGCATGTAAGAC+AGG | + | chr4_3:36707346-36707365 | None:intergenic | 45.0% |
| CATGCTTCCGGAATTCATTC+AGG | - | chr4_3:36707352-36707371 | Msa0639820:intron | 45.0% | |
| ACCAGGAGAATTCTCAAACG+CGG | + | chr4_3:36707525-36707544 | None:intergenic | 45.0% | |
| TGGCAAAGAACAGAACTGCA+GGG | + | chr4_3:36707766-36707785 | None:intergenic | 45.0% | |
| ATGGCAAAGAACAGAACTGC+AGG | + | chr4_3:36707767-36707786 | None:intergenic | 45.0% | |
| GAACGGTAGTACTTCACGAT+TGG | + | chr4_3:36707848-36707867 | None:intergenic | 45.0% | |
| !!! | AACAGTTTTGGATCCTTCGG+AGG | + | chr4_3:36707879-36707898 | None:intergenic | 45.0% |
| ATGTGCTTCTTTCCAGGACA+TGG | - | chr4_3:36708030-36708049 | Msa0639820:intron | 45.0% | |
| ACCGCAAAGTATGGTAAGCA+GGG | - | chr4_3:36708443-36708462 | Msa0639820:intron | 45.0% | |
| TGCACCTAAAGGTTACAAGG+TGG | - | chr4_3:36708535-36708554 | Msa0639820:intron | 45.0% | |
| GCACCTAAAGGTTACAAGGT+GGG | - | chr4_3:36708536-36708555 | Msa0639820:intron | 45.0% | |
| AGACCCACCTTGTAACCTTT+AGG | + | chr4_3:36708542-36708561 | None:intergenic | 45.0% | |
| GTTACAAGGTGGGTCTGTTA+AGG | - | chr4_3:36708546-36708565 | Msa0639820:intron | 45.0% | |
| GGGACCTGAACAAAATGCTT+TGG | - | chr4_3:36708637-36708656 | Msa0639820:CDS | 45.0% | |
| CTTCTTGGAGGTCTATTTGC+AGG | - | chr4_3:36708680-36708699 | Msa0639820:intron | 45.0% | |
| TCTTGGAGGTCTATTTGCAG+GGG | - | chr4_3:36708682-36708701 | Msa0639820:intron | 45.0% | |
| TGGAGTCTCACTGATGACCA+TGG | + | chr4_3:36705369-36705388 | None:intergenic | 50.0% | |
| GCAGGGCAAATATGCAGCAA+TGG | - | chr4_3:36705464-36705483 | Msa0639820:CDS | 50.0% | |
| !! | TGCTGGTTTCTTGGCATTGG+GGG | - | chr4_3:36705492-36705511 | Msa0639820:intron | 50.0% |
| GCTGTGCCCATCTCAAATTC+AGG | + | chr4_3:36705663-36705682 | None:intergenic | 50.0% | |
| TGAAGCCGCCATAGAGGAAA+GGG | - | chr4_3:36705858-36705877 | Msa0639820:intron | 50.0% | |
| GATAGCCCTTTCCTCTATGG+CGG | + | chr4_3:36705866-36705885 | None:intergenic | 50.0% | |
| TGAAGCCGCCATAGAGGAAA+GGG | - | chr4_3:36705858-36705877 | Msa0639820:intron | 50.0% | |
| GATAGCCCTTTCCTCTATGG+CGG | + | chr4_3:36705866-36705885 | None:intergenic | 50.0% | |
| ! | TTTGGGTTACGCTCTCCTCA+TGG | - | chr4_3:36706240-36706259 | Msa0639820:CDS | 50.0% |
| TTGGGTTACGCTCTCCTCAT+GGG | - | chr4_3:36706241-36706260 | Msa0639820:CDS | 50.0% | |
| AGAGTGGTAGATAGCGTTCG+TGG | + | chr4_3:36706360-36706379 | None:intergenic | 50.0% | |
| CAACACACCTCCTCATACTC+AGG | + | chr4_3:36706387-36706406 | None:intergenic | 50.0% | |
| GTCACTAGCGATGTGATCGT+AGG | - | chr4_3:36706917-36706936 | Msa0639820:intron | 50.0% | |
| TGGTAAGCACCCTAGAAGGA+TGG | + | chr4_3:36706994-36707013 | None:intergenic | 50.0% | |
| ACAAGACTGCGGAACCTGTT+CGG | - | chr4_3:36707079-36707098 | Msa0639820:CDS | 50.0% | |
| GCTGATGCCCATATACAAGG+CGG | - | chr4_3:36707308-36707327 | Msa0639820:intron | 50.0% | |
| TGCCCATATACAAGGCGGAA+TGG | - | chr4_3:36707313-36707332 | Msa0639820:intron | 50.0% | |
| CCACCATTCCGCCTTGTATA+TGG | + | chr4_3:36707319-36707338 | None:intergenic | 50.0% | |
| CCATATACAAGGCGGAATGG+TGG | - | chr4_3:36707316-36707335 | Msa0639820:intron | 50.0% | |
| TTGTTGCAGTCGTTCCTTGC+TGG | - | chr4_3:36707449-36707468 | Msa0639820:intron | 50.0% | |
| GCGTTTGAGAATTCTCCTGG+TGG | - | chr4_3:36707524-36707543 | Msa0639820:intron | 50.0% | |
| GTACTATGTCAGGTGAGGTC+TGG | + | chr4_3:36707928-36707947 | None:intergenic | 50.0% | |
| ! | GATCACACACTTTAGGGACC+TGG | - | chr4_3:36708185-36708204 | Msa0639820:intron | 50.0% |
| ! | ACACACTTTAGGGACCTGGT+AGG | - | chr4_3:36708189-36708208 | Msa0639820:intron | 50.0% |
| CACCGCAAAGTATGGTAAGC+AGG | - | chr4_3:36708442-36708461 | Msa0639820:intron | 50.0% | |
| GCCCTGCTTACCATACTTTG+CGG | + | chr4_3:36708447-36708466 | None:intergenic | 50.0% | |
| CAAAGTATGGTAAGCAGGGC+TGG | - | chr4_3:36708447-36708466 | Msa0639820:intron | 50.0% | |
| TTGCAGGGGTAACACTTGAC+TGG | - | chr4_3:36708696-36708715 | Msa0639820:intron | 50.0% | |
| ! | GGGTAACACTTGACTGGCTA+TGG | - | chr4_3:36708702-36708721 | Msa0639820:intron | 50.0% |
| TGAGACTCCACCACGTCTTG+AGG | - | chr4_3:36705379-36705398 | Msa0639820:three_prime_UTR | 55.0% | |
| ! | GCATTGGGGGTCTTTTCGCT+TGG | - | chr4_3:36705505-36705524 | Msa0639820:intron | 55.0% |
| GTGAAGCCGCCATAGAGGAA+AGG | - | chr4_3:36705857-36705876 | Msa0639820:intron | 55.0% | |
| AGTGAAAACCGTCGTGGACG+CGG | - | chr4_3:36705905-36705924 | Msa0639820:intron | 55.0% | |
| TTTAAGAGCCGCGTCCACGA+CGG | + | chr4_3:36705916-36705935 | None:intergenic | 55.0% | |
| TCGTGGACGCGGCTCTTAAA+GGG | - | chr4_3:36705916-36705935 | Msa0639820:intron | 55.0% | |
| GTGAAGCCGCCATAGAGGAA+AGG | - | chr4_3:36705857-36705876 | Msa0639820:intron | 55.0% | |
| AGTGAAAACCGTCGTGGACG+CGG | - | chr4_3:36705905-36705924 | Msa0639820:intron | 55.0% | |
| TTTAAGAGCCGCGTCCACGA+CGG | + | chr4_3:36705916-36705935 | None:intergenic | 55.0% | |
| TCGTGGACGCGGCTCTTAAA+GGG | - | chr4_3:36705916-36705935 | Msa0639820:intron | 55.0% | |
| CATTAGGGGGTAGAGCCTCA+TGG | + | chr4_3:36706211-36706230 | None:intergenic | 55.0% | |
| CATGAGGCTCTACCCCCTAA+TGG | - | chr4_3:36706209-36706228 | Msa0639820:CDS | 55.0% | |
| GCCGCGTTTGAGAATTCTCC+TGG | - | chr4_3:36707521-36707540 | Msa0639820:intron | 55.0% | |
| TCTCCTGGTGGTCTTCGCAA+AGG | - | chr4_3:36707536-36707555 | Msa0639820:intron | 55.0% | |
| ! | CTTCGGAGGCTGCTTTCGAA+CGG | + | chr4_3:36707865-36707884 | None:intergenic | 55.0% |
| ACAGCTGATCTTGCTGCAGC+TGG | - | chr4_3:36707899-36707918 | Msa0639820:intron | 55.0% | |
| GGTGAGTGAAGCCGCCATAG+AGG | - | chr4_3:36705852-36705871 | Msa0639820:intron | 60.0% | |
| GTCGTGGACGCGGCTCTTAA+AGG | - | chr4_3:36705915-36705934 | Msa0639820:intron | 60.0% | |
| GGTGAGTGAAGCCGCCATAG+AGG | - | chr4_3:36705852-36705871 | Msa0639820:intron | 60.0% | |
| GTCGTGGACGCGGCTCTTAA+AGG | - | chr4_3:36705915-36705934 | Msa0639820:intron | 60.0% | |
| CAGACGCTGCAGAACCAGCA+AGG | + | chr4_3:36707466-36707485 | None:intergenic | 60.0% | |
| !! | CTTGCTGGTTCTGCAGCGTC+TGG | - | chr4_3:36707464-36707483 | Msa0639820:intron | 60.0% |
| GCTCCTTTGCGAAGACCACC+AGG | + | chr4_3:36707542-36707561 | None:intergenic | 60.0% | |
| CGTTCGAAAGCAGCCTCCGA+AGG | - | chr4_3:36707863-36707882 | Msa0639820:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 36705276 | 36708868 | 36705276 | ID=Msa0639820;Name=Msa0639820 |
| chr4_3 | mRNA | 36705276 | 36708868 | 36705276 | ID=Msa0639820-mRNA-1;Parent=Msa0639820;Name=Msa0639820-mRNA-1;_AED=0.10;_eAED=0.10;_QI=92|1|1|1|1|1|9|123|414 |
| chr4_3 | exon | 36705276 | 36705506 | 36705276 | ID=Msa0639820-mRNA-1:exon:8487;Parent=Msa0639820-mRNA-1 |
| chr4_3 | exon | 36705591 | 36705849 | 36705591 | ID=Msa0639820-mRNA-1:exon:8486;Parent=Msa0639820-mRNA-1 |
| chr4_3 | exon | 36705938 | 36706098 | 36705938 | ID=Msa0639820-mRNA-1:exon:8485;Parent=Msa0639820-mRNA-1 |
| chr4_3 | exon | 36706201 | 36706373 | 36706201 | ID=Msa0639820-mRNA-1:exon:8484;Parent=Msa0639820-mRNA-1 |
| chr4_3 | exon | 36706581 | 36706686 | 36706581 | ID=Msa0639820-mRNA-1:exon:8483;Parent=Msa0639820-mRNA-1 |
| chr4_3 | exon | 36706771 | 36706914 | 36706771 | ID=Msa0639820-mRNA-1:exon:8482;Parent=Msa0639820-mRNA-1 |
| chr4_3 | exon | 36707003 | 36707158 | 36707003 | ID=Msa0639820-mRNA-1:exon:8481;Parent=Msa0639820-mRNA-1 |
| chr4_3 | exon | 36708572 | 36708676 | 36708572 | ID=Msa0639820-mRNA-1:exon:8480;Parent=Msa0639820-mRNA-1 |
| chr4_3 | exon | 36708744 | 36708868 | 36708744 | ID=Msa0639820-mRNA-1:exon:8479;Parent=Msa0639820-mRNA-1 |
| chr4_3 | five_prime_UTR | 36708777 | 36708868 | 36708777 | ID=Msa0639820-mRNA-1:five_prime_utr;Parent=Msa0639820-mRNA-1 |
| chr4_3 | CDS | 36708744 | 36708776 | 36708744 | ID=Msa0639820-mRNA-1:cds;Parent=Msa0639820-mRNA-1 |
| chr4_3 | CDS | 36708572 | 36708676 | 36708572 | ID=Msa0639820-mRNA-1:cds;Parent=Msa0639820-mRNA-1 |
| chr4_3 | CDS | 36707003 | 36707158 | 36707003 | ID=Msa0639820-mRNA-1:cds;Parent=Msa0639820-mRNA-1 |
| chr4_3 | CDS | 36706771 | 36706914 | 36706771 | ID=Msa0639820-mRNA-1:cds;Parent=Msa0639820-mRNA-1 |
| chr4_3 | CDS | 36706581 | 36706686 | 36706581 | ID=Msa0639820-mRNA-1:cds;Parent=Msa0639820-mRNA-1 |
| chr4_3 | CDS | 36706201 | 36706373 | 36706201 | ID=Msa0639820-mRNA-1:cds;Parent=Msa0639820-mRNA-1 |
| chr4_3 | CDS | 36705938 | 36706098 | 36705938 | ID=Msa0639820-mRNA-1:cds;Parent=Msa0639820-mRNA-1 |
| chr4_3 | CDS | 36705591 | 36705849 | 36705591 | ID=Msa0639820-mRNA-1:cds;Parent=Msa0639820-mRNA-1 |
| chr4_3 | CDS | 36705399 | 36705506 | 36705399 | ID=Msa0639820-mRNA-1:cds;Parent=Msa0639820-mRNA-1 |
| chr4_3 | three_prime_UTR | 36705276 | 36705398 | 36705276 | ID=Msa0639820-mRNA-1:three_prime_utr;Parent=Msa0639820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
