Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599040 | XP_024631389.1 | 96.135 | 414 | 16 | 0 | 1 | 414 | 1 | 414 | 0.0 | 764 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599040 | sp|Q9M0Y3|ENT3_ARATH | 68.460 | 409 | 128 | 1 | 4 | 412 | 7 | 414 | 0.0 | 576 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599040 | A0A072V6W8 | 96.098 | 410 | 16 | 0 | 1 | 410 | 1 | 410 | 0.0 | 754 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012040 | Msa0599040 | 0.802088 | 6.621446e-49 | -8.615850e-47 |
| Msa0037700 | Msa0599040 | 0.808895 | 2.473693e-50 | -8.615850e-47 |
| Msa0057520 | Msa0599040 | 0.801017 | 1.097783e-48 | -8.615850e-47 |
| Msa0086650 | Msa0599040 | 0.802544 | 5.335289e-49 | -8.615850e-47 |
| Msa0108560 | Msa0599040 | 0.803062 | 4.170230e-49 | -8.615850e-47 |
| Msa0122590 | Msa0599040 | 0.806592 | 7.633248e-50 | -8.615850e-47 |
| Msa0133130 | Msa0599040 | 0.803595 | 3.234996e-49 | -8.615850e-47 |
| Msa0152170 | Msa0599040 | 0.817835 | 2.682795e-52 | -8.615850e-47 |
| Msa0220440 | Msa0599040 | 0.815162 | 1.064635e-51 | -8.615850e-47 |
| Msa0223010 | Msa0599040 | 0.818149 | 2.278708e-52 | -8.615850e-47 |
| Msa0226890 | Msa0599040 | 0.805506 | 1.292071e-49 | -8.615850e-47 |
| Msa0442200 | Msa0599040 | 0.801701 | 7.951146e-49 | -8.615850e-47 |
| Msa0466390 | Msa0599040 | 0.823270 | 1.516329e-53 | -8.615850e-47 |
| Msa0468130 | Msa0599040 | 0.804293 | 2.316195e-49 | -8.615850e-47 |
| Msa0249100 | Msa0599040 | 0.802542 | 5.339478e-49 | -8.615850e-47 |
| Msa0261720 | Msa0599040 | 0.805217 | 1.484847e-49 | -8.615850e-47 |
| Msa0287410 | Msa0599040 | 0.803757 | 2.994021e-49 | -8.615850e-47 |
| Msa0292030 | Msa0599040 | 0.800522 | 1.385225e-48 | -8.615850e-47 |
| Msa0309550 | Msa0599040 | 0.809574 | 1.769521e-50 | -8.615850e-47 |
| Msa0339620 | Msa0599040 | 0.808770 | 2.629982e-50 | -8.615850e-47 |
| Msa0344910 | Msa0599040 | 0.836036 | 1.184232e-56 | -8.615850e-47 |
| Msa0344980 | Msa0599040 | 0.817483 | 3.220684e-52 | -8.615850e-47 |
| Msa0351810 | Msa0599040 | 0.801838 | 7.452597e-49 | -8.615850e-47 |
| Msa0484780 | Msa0599040 | 0.810805 | 9.602522e-51 | -8.615850e-47 |
| Msa0485120 | Msa0599040 | 0.803519 | 3.353514e-49 | -8.615850e-47 |
| Msa0489100 | Msa0599040 | 0.806583 | 7.665919e-50 | -8.615850e-47 |
| Msa0561230 | Msa0599040 | 0.808990 | 2.360438e-50 | -8.615850e-47 |
| Msa0575470 | Msa0599040 | 0.831857 | 1.316232e-55 | -8.615850e-47 |
| Msa0599040 | Msa0628740 | 0.802123 | 6.512079e-49 | -8.615850e-47 |
| Msa0599040 | Msa0639820 | 0.872948 | 2.148080e-67 | -8.615850e-47 |
| Msa0599040 | Msa0653490 | 0.825846 | 3.750671e-54 | -8.615850e-47 |
| Msa0599040 | Msa0660300 | 0.807445 | 5.036659e-50 | -8.615850e-47 |
| Msa0599040 | Msa0666140 | 0.800608 | 1.330536e-48 | -8.615850e-47 |
| Msa0599040 | Msa0673460 | 0.817401 | 3.360913e-52 | -8.615850e-47 |
| Msa0599040 | Msa0698360 | 0.803237 | 3.837376e-49 | -8.615850e-47 |
| Msa0599040 | Msa0731180 | 0.820938 | 5.265560e-53 | -8.615850e-47 |
| Msa0599040 | Msa0765380 | 0.801059 | 1.076685e-48 | -8.615850e-47 |
| Msa0599040 | Msa0771720 | 0.836782 | 7.646027e-57 | -8.615850e-47 |
| Msa0599040 | Msa0795080 | 0.800570 | 1.354384e-48 | -8.615850e-47 |
| Msa0599040 | Msa0824680 | 0.807470 | 4.975365e-50 | -8.615850e-47 |
| Msa0599040 | Msa0869120 | 0.807412 | 5.118881e-50 | -8.615850e-47 |
| Msa0599040 | Msa0877410 | 0.827410 | 1.588836e-54 | -8.615850e-47 |
| Msa0599040 | Msa0899230 | 0.802922 | 4.458119e-49 | -8.615850e-47 |
| Msa0599040 | Msa0927670 | 0.809156 | 2.174825e-50 | -8.615850e-47 |
| Msa0599040 | Msa0944550 | 0.828471 | 8.825140e-55 | -8.615850e-47 |
| Msa0599040 | Msa0960160 | 0.816807 | 4.571391e-52 | -8.615850e-47 |
| Msa0599040 | Msa0982270 | 0.810729 | 9.970420e-51 | -8.615850e-47 |
| Msa0599040 | Msa0992490 | -0.803062 | 4.169424e-49 | -8.615850e-47 |
| Msa0599040 | Msa0999040 | 0.810601 | 1.063024e-50 | -8.615850e-47 |
| Msa0599040 | Msa1023920 | 0.808334 | 3.259038e-50 | -8.615850e-47 |
| Msa0599040 | Msa1059570 | 0.804916 | 1.716837e-49 | -8.615850e-47 |
| Msa0599040 | Msa1082500 | 0.825982 | 3.482331e-54 | -8.615850e-47 |
| Msa0599040 | Msa1107900 | 0.804996 | 1.652166e-49 | -8.615850e-47 |
| Msa0599040 | Msa1130110 | 0.810452 | 1.144845e-50 | -8.615850e-47 |
| Msa0599040 | Msa1172670 | 0.812636 | 3.837019e-51 | -8.615850e-47 |
| Msa0599040 | Msa1174040 | 0.813614 | 2.341556e-51 | -8.615850e-47 |
| Msa0599040 | Msa1217810 | 0.806354 | 8.566180e-50 | -8.615850e-47 |
| Msa0599040 | Msa1217830 | 0.841559 | 4.416086e-58 | -8.615850e-47 |
| Msa0599040 | Msa1233500 | 0.813906 | 2.019035e-51 | -8.615850e-47 |
| Msa0599040 | Msa1233890 | 0.812662 | 3.787551e-51 | -8.615850e-47 |
| Msa0599040 | Msa1247250 | 0.803759 | 2.990300e-49 | -8.615850e-47 |
| Msa0599040 | Msa1276440 | 0.808940 | 2.418999e-50 | -8.615850e-47 |
| Msa0599040 | Msa1279210 | 0.819533 | 1.104722e-52 | -8.615850e-47 |
| Msa0599040 | Msa1292400 | 0.802590 | 5.220081e-49 | -8.615850e-47 |
| Msa0599040 | Msa1300350 | -0.802391 | 5.737438e-49 | -8.615850e-47 |
| Msa0599040 | Msa1305340 | 0.800141 | 1.656125e-48 | -8.615850e-47 |
| Msa0599040 | Msa1306750 | 0.819217 | 1.304019e-52 | -8.615850e-47 |
| Msa0599040 | Msa1314340 | 0.801270 | 9.744471e-49 | -8.615850e-47 |
| Msa0599040 | Msa1322190 | 0.802677 | 5.007968e-49 | -8.615850e-47 |
| Msa0599040 | Msa1348950 | 0.813846 | 2.081691e-51 | -8.615850e-47 |
| Msa0599040 | Msa1362880 | 0.804436 | 2.162349e-49 | -8.615850e-47 |
| Msa0599040 | Msa1407600 | 0.813309 | 2.732671e-51 | -8.615850e-47 |
| Msa0599040 | Msa1411020 | 0.811611 | 6.420558e-51 | -8.615850e-47 |
| Msa0599040 | Msa1424290 | 0.802190 | 6.308880e-49 | -8.615850e-47 |
| Msa0599040 | Msa1427230 | 0.823867 | 1.099229e-53 | -8.615850e-47 |
| Msa0599040 | Msa1434350 | 0.801925 | 7.153219e-49 | -8.615850e-47 |
| Msa0599040 | Msa1439320 | 0.806775 | 6.983567e-50 | -8.615850e-47 |
| Msa0599040 | Msa1444740 | 0.802333 | 5.897093e-49 | -8.615850e-47 |
| Msa0599040 | Msa1460830 | 0.824434 | 8.090540e-54 | -8.615850e-47 |
| Msa0599040 | Msa1466730 | 0.803858 | 2.852783e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599040 | MtrunA17_Chr4g0022871 | 80.779 | 411 | 79 | 0 | 4 | 414 | 4 | 414 | 0.0 | 677 |
| Msa0599040 | MtrunA17_Chr4g0022801 | 89.394 | 396 | 14 | 1 | 47 | 414 | 10 | 405 | 0.0 | 660 |
| Msa0599040 | MtrunA17_Chr2g0323381 | 77.536 | 414 | 93 | 0 | 1 | 414 | 1 | 414 | 0.0 | 644 |
| Msa0599040 | MtrunA17_Chr4g0022861 | 76.884 | 398 | 92 | 0 | 17 | 414 | 1 | 398 | 0.0 | 626 |
| Msa0599040 | MtrunA17_Chr2g0280991 | 69.853 | 408 | 121 | 1 | 7 | 412 | 14 | 421 | 0.0 | 579 |
| Msa0599040 | MtrunA17_Chr2g0280971 | 67.322 | 407 | 132 | 1 | 7 | 412 | 35 | 441 | 0.0 | 554 |
| Msa0599040 | MtrunA17_Chr8g0335821 | 57.967 | 364 | 149 | 2 | 52 | 412 | 2 | 364 | 3.56e-136 | 394 |
| Msa0599040 | MtrunA17_Chr1g0184961 | 73.622 | 254 | 55 | 2 | 47 | 293 | 104 | 352 | 2.89e-125 | 366 |
| Msa0599040 | MtrunA17_Chr4g0020331 | 33.820 | 411 | 240 | 12 | 11 | 410 | 26 | 415 | 4.86e-55 | 187 |
| Msa0599040 | MtrunA17_Chr2g0280961 | 61.111 | 126 | 48 | 1 | 244 | 368 | 106 | 231 | 1.13e-45 | 157 |
| Msa0599040 | MtrunA17_Chr2g0280961 | 56.180 | 89 | 39 | 0 | 52 | 140 | 2 | 90 | 2.47e-24 | 100 |
| Msa0599040 | MtrunA17_Chr3g0103741 | 30.730 | 397 | 246 | 8 | 23 | 410 | 47 | 423 | 1.57e-45 | 162 |
| Msa0599040 | MtrunA17_Chr4g0063911 | 28.571 | 427 | 249 | 14 | 4 | 410 | 8 | 398 | 1.67e-39 | 145 |
| Msa0599040 | MtrunA17_Chr1g0184971 | 73.016 | 63 | 17 | 0 | 296 | 358 | 2 | 64 | 3.91e-25 | 98.2 |
| Msa0599040 | MtrunA17_Chr4g0022811 | 95.455 | 44 | 2 | 0 | 3 | 46 | 1 | 44 | 6.91e-24 | 93.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0599040 | AT4G05120.1 | 68.460 | 409 | 128 | 1 | 4 | 412 | 7 | 414 | 0.0 | 576 |
| Msa0599040 | AT4G05120.2 | 68.460 | 409 | 128 | 1 | 4 | 412 | 7 | 414 | 0.0 | 576 |
| Msa0599040 | AT4G05110.3 | 65.281 | 409 | 141 | 1 | 4 | 412 | 7 | 414 | 0.0 | 552 |
| Msa0599040 | AT4G05110.1 | 65.281 | 409 | 141 | 1 | 4 | 412 | 7 | 414 | 0.0 | 552 |
| Msa0599040 | AT4G05110.2 | 65.037 | 409 | 142 | 1 | 4 | 412 | 7 | 414 | 0.0 | 551 |
| Msa0599040 | AT4G05140.1 | 63.814 | 409 | 148 | 0 | 4 | 412 | 7 | 415 | 0.0 | 541 |
| Msa0599040 | AT4G05130.1 | 63.017 | 411 | 151 | 1 | 4 | 414 | 7 | 416 | 0.0 | 538 |
| Msa0599040 | AT3G09990.1 | 62.683 | 410 | 150 | 2 | 6 | 414 | 10 | 417 | 0.0 | 531 |
| Msa0599040 | AT1G61630.1 | 61.557 | 411 | 155 | 2 | 4 | 412 | 5 | 414 | 0.0 | 513 |
| Msa0599040 | AT1G70330.1 | 29.280 | 403 | 261 | 7 | 16 | 410 | 64 | 450 | 1.97e-49 | 174 |
| Msa0599040 | AT1G02630.1 | 28.708 | 418 | 256 | 10 | 1 | 410 | 6 | 389 | 6.81e-45 | 160 |
| Msa0599040 | AT1G02630.2 | 28.169 | 213 | 150 | 3 | 1 | 212 | 6 | 216 | 6.08e-24 | 102 |
Find 108 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCAGTCTTGTACTGATTT+TGG | 0.117549 | 4_2:+37021598 | None:intergenic |
| GTACTTCACGATTGGTAATT+TGG | 0.154465 | 4_2:+37020817 | None:intergenic |
| ATATTCTTGACATCCTTCTT+AGG | 0.171486 | 4_2:-37020181 | Msa0599040:CDS |
| GTATATCAGCCATTTATATT+TGG | 0.187219 | 4_2:-37021650 | Msa0599040:CDS |
| TGCATAGTTAGTGGTGTATT+TGG | 0.235166 | 4_2:-37021385 | Msa0599040:CDS |
| CTTCTTGGAGGTCTATTTGC+AGG | 0.236906 | 4_2:-37019974 | Msa0599040:CDS |
| CCACCATTCCGCCTTGTATA+TGG | 0.254233 | 4_2:+37021350 | None:intergenic |
| ATTTGGAACACAAGCAATAT+TGG | 0.269430 | 4_2:-37021633 | Msa0599040:CDS |
| CTTGACTGGCTATGGTTAAT+AGG | 0.280707 | 4_2:-37019944 | Msa0599040:CDS |
| TTTGCTGGTTTCTTGGCATT+GGG | 0.292449 | 4_2:-37022925 | Msa0599040:CDS |
| GCTTGTGTTCCAAATATAAA+TGG | 0.295680 | 4_2:+37021641 | None:intergenic |
| CATGCTTCCGGAATTCATTC+AGG | 0.308853 | 4_2:-37021314 | Msa0599040:intron |
| ATTTGCTGGTTTCTTGGCAT+TGG | 0.318253 | 4_2:-37022926 | Msa0599040:CDS |
| TGCAGAAATACCATCCTTCT+AGG | 0.328197 | 4_2:-37021685 | Msa0599040:intron |
| GAATTATAAATATTTAACTA+TGG | 0.331020 | 4_2:-37019818 | Msa0599040:three_prime_UTR |
| ATGTTAATGTTGTGTCTTCT+TGG | 0.334137 | 4_2:-37019989 | Msa0599040:CDS |
| TACTTCACGATTGGTAATTT+GGG | 0.335339 | 4_2:+37020818 | None:intergenic |
| TTGTTGCAGTCGTTCCTTGC+TGG | 0.335887 | 4_2:-37021210 | Msa0599040:intron |
| TGAAGTGAATTAAGCATCTA+AGG | 0.353710 | 4_2:-37023075 | Msa0599040:five_prime_UTR |
| TTACTATATTTACTTGTTCC+CGG | 0.355375 | 4_2:-37022864 | Msa0599040:intron |
| ACAATGTTAGCACATATATT+AGG | 0.364679 | 4_2:+37020525 | None:intergenic |
| ATGGTGATTTGCTGGTTTCT+TGG | 0.368089 | 4_2:-37022932 | Msa0599040:CDS |
| AGACCTGTCTTACATGCTTC+CGG | 0.398247 | 4_2:-37021326 | Msa0599040:CDS |
| GGGACCTGAACAAAATGCTT+TGG | 0.400480 | 4_2:-37020017 | Msa0599040:CDS |
| AAGATCGGCTGAAACAGTTT+TGG | 0.400943 | 4_2:+37020766 | None:intergenic |
| CTTGCTGGTTCTGCAGCGTC+TGG | 0.403809 | 4_2:-37021195 | Msa0599040:CDS |
| TCACTACAGCAGTAATTTCT+CGG | 0.407068 | 4_2:-37020261 | Msa0599040:CDS |
| AGACCCACCTTGTAACCTTT+AGG | 0.407785 | 4_2:+37020115 | None:intergenic |
| ATGCAGCAATGGTGATTTGC+TGG | 0.414070 | 4_2:-37022940 | Msa0599040:CDS |
| TCAGCCGATCTTGCTGCAGC+TGG | 0.416795 | 4_2:-37020755 | Msa0599040:CDS |
| ATTGGTATATGCATAGTTAG+TGG | 0.422297 | 4_2:-37021394 | Msa0599040:CDS |
| CACCATTCCGCCTTGTATAT+GGG | 0.424233 | 4_2:+37021351 | None:intergenic |
| CAAAGTATGGTAAGCAGGGC+TGG | 0.429657 | 4_2:-37020207 | Msa0599040:CDS |
| GATACCGGATCACACAGTTT+AGG | 0.436516 | 4_2:-37020476 | Msa0599040:CDS |
| CATGGAAGATTCAAAACAAC+AGG | 0.436749 | 4_2:-37020606 | Msa0599040:CDS |
| TATTCTTGACATCCTTCTTA+GGG | 0.439352 | 4_2:-37020180 | Msa0599040:CDS |
| TTCTTGGAGGTCTATTTGCA+GGG | 0.442770 | 4_2:-37019973 | Msa0599040:CDS |
| GGACCTGAACAAAATGCTTT+GGG | 0.445382 | 4_2:-37020016 | Msa0599040:CDS |
| GTACTATGTCAGGTGAGGTC+TGG | 0.446753 | 4_2:+37020729 | None:intergenic |
| TAGTTGGATTTAGCAACATC+TGG | 0.449427 | 4_2:-37021439 | Msa0599040:CDS |
| CACCGCAAAGTATGGTAAGC+AGG | 0.454790 | 4_2:-37020212 | Msa0599040:CDS |
| ATGTACAAAATGAAACCATA+TGG | 0.459735 | 4_2:-37023146 | None:intergenic |
| GCACATTGTTCACAAATAGA+TGG | 0.460153 | 4_2:-37019873 | Msa0599040:three_prime_UTR |
| ATGCTGACCTGAATGAATTC+CGG | 0.461203 | 4_2:+37021307 | None:intergenic |
| GCCCTGCTTACCATACTTTG+CGG | 0.464646 | 4_2:+37020210 | None:intergenic |
| GTATCTTCTGATAAGAAGCC+AGG | 0.466762 | 4_2:+37020494 | None:intergenic |
| TTAATGTTGTGTCTTCTTGG+AGG | 0.472371 | 4_2:-37019986 | Msa0599040:CDS |
| ACAATGGTAAGTACCCTAGA+AGG | 0.477039 | 4_2:+37021671 | None:intergenic |
| ACATCTGGTAAAGGAGGGAT+TGG | 0.484610 | 4_2:-37021424 | Msa0599040:CDS |
| AAAAGAAACAGTACTATGTC+AGG | 0.486807 | 4_2:+37020719 | None:intergenic |
| ACTCGTGAAAATCTTGAAGA+TGG | 0.489152 | 4_2:-37020299 | Msa0599040:CDS |
| AAACGACAGTGTATCCGAAC+AGG | 0.499026 | 4_2:+37021573 | None:intergenic |
| GATGCCAGCTGCAGCAAGAT+CGG | 0.505764 | 4_2:+37020751 | None:intergenic |
| GCCGCGTTTGAGAATTCTCC+TGG | 0.506870 | 4_2:-37021138 | Msa0599040:CDS |
| TGCTGGTTTCTTGGCATTGG+GGG | 0.514420 | 4_2:-37022923 | Msa0599040:CDS |
| TTGCAGGGGTAACACTTGAC+TGG | 0.516302 | 4_2:-37019958 | Msa0599040:CDS |
| TGGCTATGGTTAATAGGTAA+AGG | 0.519736 | 4_2:-37019938 | Msa0599040:CDS |
| GAACGGTAGTACTTCACGAT+TGG | 0.520220 | 4_2:+37020809 | None:intergenic |
| TTGCTGGTTTCTTGGCATTG+GGG | 0.520379 | 4_2:-37022924 | Msa0599040:CDS |
| TCACTTCAATCAATCAAGAA+AGG | 0.520780 | 4_2:+37023090 | None:intergenic |
| TTCTGCACCTAAAGGTTACA+AGG | 0.528109 | 4_2:-37020122 | Msa0599040:intron |
| GATTTAGCAACATCTGGTAA+AGG | 0.531613 | 4_2:-37021433 | Msa0599040:CDS |
| CATATACAAGGCGGAATGGT+GGG | 0.535308 | 4_2:-37021349 | Msa0599040:CDS |
| GGGTAACACTTGACTGGCTA+TGG | 0.535952 | 4_2:-37019952 | Msa0599040:CDS |
| GGTTCCTAAACTGTGTGATC+CGG | 0.543045 | 4_2:+37020472 | None:intergenic |
| ACCATTGGATAACCCTAAGA+AGG | 0.551519 | 4_2:+37020168 | None:intergenic |
| GCTCCTTTGCGAAGACCACC+AGG | 0.551931 | 4_2:+37021120 | None:intergenic |
| ACAGATAGTGAGGTAACCAT+TGG | 0.553661 | 4_2:+37020153 | None:intergenic |
| TATGGTTAATAGGTAAAGGA+TGG | 0.554780 | 4_2:-37019934 | Msa0599040:CDS |
| ACAAGACTGAGGAACCTGTT+CGG | 0.558213 | 4_2:-37021587 | Msa0599040:CDS |
| AGCAATATTGGCTTACAATG+AGG | 0.563692 | 4_2:-37021621 | Msa0599040:CDS |
| GGCTTCTTATCAGAAGATAC+CGG | 0.571927 | 4_2:-37020491 | Msa0599040:CDS |
| TCCTTCTTAGGGTTATCCAA+TGG | 0.573027 | 4_2:-37020169 | Msa0599040:CDS |
| ATAGCTGATGCCCATATACA+AGG | 0.577441 | 4_2:-37021361 | Msa0599040:CDS |
| CGTTCGAAAGCAGCCTCCGA+GGG | 0.580076 | 4_2:-37020791 | Msa0599040:CDS |
| ATTCCGGAAGCATGTAAGAC+AGG | 0.580637 | 4_2:+37021323 | None:intergenic |
| TTAGCAACATCTGGTAAAGG+AGG | 0.580672 | 4_2:-37021430 | Msa0599040:CDS |
| TGAGACTCCACCACGTCTTG+AGG | 0.583689 | 4_2:-37023036 | Msa0599040:intron |
| TGCCCATATACAAGGCGGAA+TGG | 0.587617 | 4_2:-37021353 | Msa0599040:CDS |
| CCGTTCGAAAGCAGCCTCCG+AGG | 0.588112 | 4_2:-37020792 | Msa0599040:CDS |
| GCAGAAATACCATCCTTCTA+GGG | 0.596513 | 4_2:-37021684 | Msa0599040:intron |
| TTAAGCATCTAAGGTAGCCA+TGG | 0.598033 | 4_2:-37023066 | Msa0599040:exon |
| GCAGGGCAAATATGCAGCAA+TGG | 0.599931 | 4_2:-37022951 | Msa0599040:intron |
| CCTCGGAGGCTGCTTTCGAA+CGG | 0.600395 | 4_2:+37020792 | None:intergenic |
| CATTGTTCACAAATAGATGG+TGG | 0.601492 | 4_2:-37019870 | Msa0599040:three_prime_UTR |
| ACCGCAAAGTATGGTAAGCA+GGG | 0.604384 | 4_2:-37020211 | Msa0599040:CDS |
| CCATATACAAGGCGGAATGG+TGG | 0.604392 | 4_2:-37021350 | Msa0599040:CDS |
| TCTTGGAGGTCTATTTGCAG+GGG | 0.607411 | 4_2:-37019972 | Msa0599040:CDS |
| TCTCCTGGTGGTCTTCGCAA+AGG | 0.610206 | 4_2:-37021123 | Msa0599040:CDS |
| AAAGGAAGAAACCTTAGTCA+AGG | 0.611250 | 4_2:+37023108 | None:intergenic |
| TAGCAACATCTGGTAAAGGA+GGG | 0.612233 | 4_2:-37021429 | Msa0599040:CDS |
| TATAAATGGCTGATATACAA+TGG | 0.614615 | 4_2:+37021655 | None:intergenic |
| GATCACACAGTTTAGGAACC+TGG | 0.623827 | 4_2:-37020469 | Msa0599040:intron |
| AAGTGAAAACACAGATAGTG+AGG | 0.626913 | 4_2:+37020143 | None:intergenic |
| TATCTTCTGATAAGAAGCCA+GGG | 0.638227 | 4_2:+37020495 | None:intergenic |
| CAGACGCTGCAGAACCAGCA+AGG | 0.638516 | 4_2:+37021196 | None:intergenic |
| TCAAAACAACAGGATCGCAA+AGG | 0.642728 | 4_2:-37020596 | Msa0599040:CDS |
| AAACAGTACTATGTCAGGTG+AGG | 0.652969 | 4_2:+37020724 | None:intergenic |
| TGGTAAGTACCCTAGAAGGA+TGG | 0.653256 | 4_2:+37021675 | None:intergenic |
| TTTGCGGTGAAATAAAACGC+TGG | 0.660087 | 4_2:+37020226 | None:intergenic |
| TATATTACCTCAAGACGTGG+TGG | 0.674673 | 4_2:+37023029 | None:intergenic |
| TGGAGTCTCACTGATGACCA+TGG | 0.695742 | 4_2:+37023049 | None:intergenic |
| GCGTTTGAGAATTCTCCTGG+TGG | 0.696893 | 4_2:-37021135 | Msa0599040:CDS |
| ACCAGGAGAATTCTCAAACG+CGG | 0.707033 | 4_2:+37021137 | None:intergenic |
| CCAAAATCAGTACAAGACTG+AGG | 0.716034 | 4_2:-37021598 | Msa0599040:CDS |
| TTATATATTACCTCAAGACG+TGG | 0.729092 | 4_2:+37023026 | None:intergenic |
| AAGATCAAACACATTAAACG+TGG | 0.738203 | 4_2:+37020339 | None:intergenic |
| GCTGATGCCCATATACAAGG+CGG | 0.752747 | 4_2:-37021358 | Msa0599040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAAAAACTTTTATTCAA+AGG | + | chr4_2:37021230-37021249 | None:intergenic | 10.0% |
| !! | GAATTATAAATATTTAACTA+TGG | - | chr4_2:37023131-37023150 | Msa0599040:five_prime_UTR | 10.0% |
| !! | TCATAAAAAAAAAATCCATA+TGG | + | chr4_2:37019821-37019840 | None:intergenic | 15.0% |
| !! | ATTGTAAAATCTTAAGATTT+GGG | + | chr4_2:37020786-37020805 | None:intergenic | 15.0% |
| !! | TATTGTAAAATCTTAAGATT+TGG | + | chr4_2:37020787-37020806 | None:intergenic | 15.0% |
| !!! | AAAATTATTGAGTTTGTTAA+AGG | + | chr4_2:37020882-37020901 | None:intergenic | 15.0% |
| !!! | TAACAAACTCAATAATTTTA+AGG | - | chr4_2:37020883-37020902 | Msa0599040:CDS | 15.0% |
| !!! | ATAATTTTAAGGAAAAATCT+AGG | - | chr4_2:37020894-37020913 | Msa0599040:intron | 15.0% |
| !!! | TAATTTTAAGGAAAAATCTA+GGG | - | chr4_2:37020895-37020914 | Msa0599040:intron | 15.0% |
| !! | GATATCAAATTTAACAATAA+AGG | - | chr4_2:37021008-37021027 | Msa0599040:intron | 15.0% |
| !!! | TGTATGTTTTTTTATTTTGT+AGG | - | chr4_2:37022911-37022930 | Msa0599040:CDS | 15.0% |
| !!! | GTATGTTTTTTTATTTTGTA+GGG | - | chr4_2:37022912-37022931 | Msa0599040:CDS | 15.0% |
| !! | TGAGAAAATAGATAAATTAC+CGG | + | chr4_2:37020107-37020126 | None:intergenic | 20.0% |
| !!! | ATTTAAAGTTTTAAACCATG+AGG | - | chr4_2:37020519-37020538 | Msa0599040:CDS | 20.0% |
| !! | TGTTATCAAAATAACAATCT+GGG | + | chr4_2:37020932-37020951 | None:intergenic | 20.0% |
| !! | ATGTTATCAAAATAACAATC+TGG | + | chr4_2:37020933-37020952 | None:intergenic | 20.0% |
| !! | TCAACATATACATTTGATAA+TGG | - | chr4_2:37021711-37021730 | Msa0599040:intron | 20.0% |
| !! | AGTATAATGACAAATAATCA+CGG | + | chr4_2:37022017-37022036 | None:intergenic | 20.0% |
| !! | TAATCTGAATCTTAACAATT+AGG | + | chr4_2:37022293-37022312 | None:intergenic | 20.0% |
| !!! | TTTTTTTATGACCTTGACTA+AGG | - | chr4_2:37019830-37019849 | Msa0599040:three_prime_UTR | 25.0% |
| ! | AAACATACATGCAATATTTG+TGG | - | chr4_2:37019954-37019973 | Msa0599040:CDS | 25.0% |
| ! | ATTTGTGGATTTCAATTCTT+TGG | - | chr4_2:37019969-37019988 | Msa0599040:CDS | 25.0% |
| !!! | GATTTCAATTCTTTGGAATT+TGG | - | chr4_2:37019976-37019995 | Msa0599040:CDS | 25.0% |
| ! | TTACTATATTTACTTGTTCC+CGG | - | chr4_2:37020085-37020104 | Msa0599040:intron | 25.0% |
| ! | GAGAAAATAGATAAATTACC+GGG | + | chr4_2:37020106-37020125 | None:intergenic | 25.0% |
| !! | TAGTTTCTTGAATTTGAGAT+GGG | - | chr4_2:37020180-37020199 | Msa0599040:CDS | 25.0% |
| ! | ATTTGATAGAAACATGAAAG+TGG | + | chr4_2:37020213-37020232 | None:intergenic | 25.0% |
| !!! | GTAAATAAGAGTGTTTTATG+TGG | - | chr4_2:37020495-37020514 | Msa0599040:CDS | 25.0% |
| !! | TAAGCCAATTCTTTGAATTT+TGG | + | chr4_2:37020833-37020852 | None:intergenic | 25.0% |
| !! | AAAATAACAATCTGGGATAT+TGG | + | chr4_2:37020925-37020944 | None:intergenic | 25.0% |
| !! | TTTTGTCATTGTCGTTATTT+AGG | - | chr4_2:37021055-37021074 | Msa0599040:intron | 25.0% |
| ! | TATAAATGGCTGATATACAA+TGG | + | chr4_2:37021297-37021316 | None:intergenic | 25.0% |
| ! | GTATATCAGCCATTTATATT+TGG | - | chr4_2:37021299-37021318 | Msa0599040:intron | 25.0% |
| ! | AACATAAATGCATAATCTAG+AGG | + | chr4_2:37021462-37021481 | None:intergenic | 25.0% |
| !!! | CAATTTTAATTACTACCATG+AGG | - | chr4_2:37021667-37021686 | Msa0599040:CDS | 25.0% |
| ! | AAGCTCAAAAAAAGATGATA+TGG | + | chr4_2:37022081-37022100 | None:intergenic | 25.0% |
| ! | ACAATGTTAGCACATATATT+AGG | + | chr4_2:37022427-37022446 | None:intergenic | 25.0% |
| ! | TTGATATTTCCATTTGTTTC+AGG | - | chr4_2:37022568-37022587 | Msa0599040:intron | 25.0% |
| !!! | TTAAGGAGCATAAACTTTTA+AGG | - | chr4_2:37022858-37022877 | Msa0599040:intron | 25.0% |
| !!! | TAAGGAGCATAAACTTTTAA+GGG | - | chr4_2:37022859-37022878 | Msa0599040:intron | 25.0% |
| ! | AACAAGCTAAACTAGAAAAA+TGG | - | chr4_2:37023048-37023067 | Msa0599040:CDS | 25.0% |
| TCACTTCAATCAATCAAGAA+AGG | + | chr4_2:37019862-37019881 | None:intergenic | 30.0% | |
| TGAAGTGAATTAAGCATCTA+AGG | - | chr4_2:37019874-37019893 | Msa0599040:three_prime_UTR | 30.0% | |
| TTATATATTACCTCAAGACG+TGG | + | chr4_2:37019926-37019945 | None:intergenic | 30.0% | |
| TTTAGTTGAAACCTTAGTCA+AGG | - | chr4_2:37020134-37020153 | Msa0599040:CDS | 30.0% | |
| CTAGTTTCTTGAATTTGAGA+TGG | - | chr4_2:37020179-37020198 | Msa0599040:CDS | 30.0% | |
| ! | TTAAAGGGCATGAAAATGTT+AGG | - | chr4_2:37020459-37020478 | Msa0599040:intron | 30.0% |
| TAGGTAAAACTCATCTAACA+TGG | + | chr4_2:37020610-37020629 | None:intergenic | 30.0% | |
| TACCTAAAAACGTGTTTACA+TGG | - | chr4_2:37020624-37020643 | Msa0599040:intron | 30.0% | |
| TGAGATATGACATGAAAATG+TGG | - | chr4_2:37020711-37020730 | Msa0599040:intron | 30.0% | |
| GAGATATGACATGAAAATGT+GGG | - | chr4_2:37020712-37020731 | Msa0599040:intron | 30.0% | |
| AAAATCTTAAGATTTGGGCT+GGG | + | chr4_2:37020781-37020800 | None:intergenic | 30.0% | |
| TAAAATCTTAAGATTTGGGC+TGG | + | chr4_2:37020782-37020801 | None:intergenic | 30.0% | |
| CTGACCAAAATTCAAAGAAT+TGG | - | chr4_2:37020826-37020845 | Msa0599040:CDS | 30.0% | |
| AATGTTCTGTTCAGAAAGTT+TGG | + | chr4_2:37021091-37021110 | None:intergenic | 30.0% | |
| GCTTGTGTTCCAAATATAAA+TGG | + | chr4_2:37021311-37021330 | None:intergenic | 30.0% | |
| ! | ATTTGGAACACAAGCAATAT+TGG | - | chr4_2:37021316-37021335 | Msa0599040:CDS | 30.0% |
| ATTGGTATATGCATAGTTAG+TGG | - | chr4_2:37021555-37021574 | Msa0599040:CDS | 30.0% | |
| CATTGAAGAGTTAAACATAC+TGG | + | chr4_2:37021854-37021873 | None:intergenic | 30.0% | |
| TAACTCTTCAATGCTTAGTT+TGG | - | chr4_2:37021861-37021880 | Msa0599040:intron | 30.0% | |
| ! | TCAGAGTTTAGCTTCATTAA+TGG | - | chr4_2:37021898-37021917 | Msa0599040:intron | 30.0% |
| TAATGACAAATAATCACGGT+GGG | + | chr4_2:37022013-37022032 | None:intergenic | 30.0% | |
| ATAATGACAAATAATCACGG+TGG | + | chr4_2:37022014-37022033 | None:intergenic | 30.0% | |
| ! | TACTTCACGATTGGTAATTT+GGG | + | chr4_2:37022134-37022153 | None:intergenic | 30.0% |
| AAAAGAAACAGTACTATGTC+AGG | + | chr4_2:37022233-37022252 | None:intergenic | 30.0% | |
| TGTCCATGACAAATTGAAAA+GGG | + | chr4_2:37022268-37022287 | None:intergenic | 30.0% | |
| ATGTCCATGACAAATTGAAA+AGG | + | chr4_2:37022269-37022288 | None:intergenic | 30.0% | |
| AAAATGAATATGAACCTACC+AGG | + | chr4_2:37022501-37022520 | None:intergenic | 30.0% | |
| GTATACACAATGTAGAACAA+AGG | + | chr4_2:37022529-37022548 | None:intergenic | 30.0% | |
| AAGATCAAACACATTAAACG+TGG | + | chr4_2:37022613-37022632 | None:intergenic | 30.0% | |
| !! | TTTTATTTCACCGCAAAGTA+TGG | - | chr4_2:37022729-37022748 | Msa0599040:intron | 30.0% |
| ATATTCTTGACATCCTTCTT+AGG | - | chr4_2:37022768-37022787 | Msa0599040:intron | 30.0% | |
| TATTCTTGACATCCTTCTTA+GGG | - | chr4_2:37022769-37022788 | Msa0599040:intron | 30.0% | |
| !! | AAGGAGCATAAACTTTTAAG+GGG | - | chr4_2:37022860-37022879 | Msa0599040:intron | 30.0% |
| ATGTTAATGTTGTGTCTTCT+TGG | - | chr4_2:37022960-37022979 | Msa0599040:intron | 30.0% | |
| TATGGTTAATAGGTAAAGGA+TGG | - | chr4_2:37023015-37023034 | Msa0599040:intron | 30.0% | |
| CTAAACTAGAAAAATGGCAT+AGG | - | chr4_2:37023054-37023073 | Msa0599040:exon | 30.0% | |
| AAAGGAAGAAACCTTAGTCA+AGG | + | chr4_2:37019844-37019863 | None:intergenic | 35.0% | |
| !! | TCAATTCTTTGGAATTTGGC+AGG | - | chr4_2:37019980-37019999 | Msa0599040:CDS | 35.0% |
| !! | CAATTCTTTGGAATTTGGCA+GGG | - | chr4_2:37019981-37020000 | Msa0599040:CDS | 35.0% |
| ! | CACTCTTATTTAGTCGATGT+GGG | + | chr4_2:37020267-37020286 | None:intergenic | 35.0% |
| GTTACCTATAGTCTGGATTA+AGG | - | chr4_2:37020337-37020356 | Msa0599040:CDS | 35.0% | |
| AACACCTTAATCCAGACTAT+AGG | + | chr4_2:37020344-37020363 | None:intergenic | 35.0% | |
| ! | CACTCTTATTTACTCGATGT+TGG | + | chr4_2:37020488-37020507 | None:intergenic | 35.0% |
| TGTTAGAATTTAAGCCCATG+AGG | + | chr4_2:37020584-37020603 | None:intergenic | 35.0% | |
| ! | CACCATGTAAACACGTTTTT+AGG | + | chr4_2:37020629-37020648 | None:intergenic | 35.0% |
| CTAAAAACGTGTTTACATGG+TGG | - | chr4_2:37020627-37020646 | Msa0599040:intron | 35.0% | |
| !! | CCAGTTTTGTAAGTTGAGTT+GGG | - | chr4_2:37020755-37020774 | Msa0599040:CDS | 35.0% |
| !! | TTCTTTGAATTTTGGTCAGC+TGG | + | chr4_2:37020825-37020844 | None:intergenic | 35.0% |
| TTCTTCAAATCATACGCATC+TGG | - | chr4_2:37021165-37021184 | Msa0599040:CDS | 35.0% | |
| ! | TATTTCTGCACAAGGAAGAA+AGG | + | chr4_2:37021254-37021273 | None:intergenic | 35.0% |
| !! | AGCAATATTGGCTTACAATG+AGG | - | chr4_2:37021328-37021347 | Msa0599040:CDS | 35.0% |
| !!! | TGTCGTTTTCTTTGGCATTT+TGG | - | chr4_2:37021391-37021410 | Msa0599040:CDS | 35.0% |
| AAGTGCACAAACAAATGAAC+AGG | + | chr4_2:37021434-37021453 | None:intergenic | 35.0% | |
| TCCAATTTACTTGCCATAGT+TGG | - | chr4_2:37021494-37021513 | Msa0599040:intron | 35.0% | |
| TCCAACTATGGCAAGTAAAT+TGG | + | chr4_2:37021498-37021517 | None:intergenic | 35.0% | |
| GATGTTGCTAAATCCAACTA+TGG | + | chr4_2:37021510-37021529 | None:intergenic | 35.0% | |
| TAGTTGGATTTAGCAACATC+TGG | - | chr4_2:37021510-37021529 | Msa0599040:intron | 35.0% | |
| GATTTAGCAACATCTGGTAA+AGG | - | chr4_2:37021516-37021535 | Msa0599040:intron | 35.0% | |
| TGCATAGTTAGTGGTGTATT+TGG | - | chr4_2:37021564-37021583 | Msa0599040:CDS | 35.0% | |
| ATTACTACCATGAGGTTCAA+AGG | - | chr4_2:37021675-37021694 | Msa0599040:CDS | 35.0% | |
| AAAGTAACCTTTGAACCTCA+TGG | + | chr4_2:37021685-37021704 | None:intergenic | 35.0% | |
| ! | GTACTTCACGATTGGTAATT+TGG | + | chr4_2:37022135-37022154 | None:intergenic | 35.0% |
| GACAAATTGAAAAGGGACAA+AGG | + | chr4_2:37022261-37022280 | None:intergenic | 35.0% | |
| ! | TGTCCCTTTTCAATTTGTCA+TGG | - | chr4_2:37022262-37022281 | Msa0599040:intron | 35.0% |
| TAACTAATGTGCTTCTTTCC+AGG | - | chr4_2:37022319-37022338 | Msa0599040:intron | 35.0% | |
| CATGGAAGATTCAAAACAAC+AGG | - | chr4_2:37022343-37022362 | Msa0599040:intron | 35.0% | |
| ! | CTAACATTGTGTATTTTCCC+TGG | - | chr4_2:37022437-37022456 | Msa0599040:intron | 35.0% |
| TATCTTCTGATAAGAAGCCA+GGG | + | chr4_2:37022457-37022476 | None:intergenic | 35.0% | |
| ATACGTGATGATTTAAGAGC+TGG | - | chr4_2:37022545-37022564 | Msa0599040:intron | 35.0% | |
| ! | AAGAGCATACCTGAAACAAA+TGG | + | chr4_2:37022580-37022599 | None:intergenic | 35.0% |
| ! | ATCTTCAAGATTTTCACGAG+TGG | + | chr4_2:37022651-37022670 | None:intergenic | 35.0% |
| ACTCGTGAAAATCTTGAAGA+TGG | - | chr4_2:37022650-37022669 | Msa0599040:intron | 35.0% | |
| TCACTACAGCAGTAATTTCT+CGG | - | chr4_2:37022688-37022707 | Msa0599040:intron | 35.0% | |
| AAGTGAAAACACAGATAGTG+AGG | + | chr4_2:37022809-37022828 | None:intergenic | 35.0% | |
| !! | TTTCCCAAAGCATTTTGTTC+AGG | + | chr4_2:37022939-37022958 | None:intergenic | 35.0% |
| TTAATGTTGTGTCTTCTTGG+AGG | - | chr4_2:37022963-37022982 | Msa0599040:intron | 35.0% | |
| TGGCTATGGTTAATAGGTAA+AGG | - | chr4_2:37023011-37023030 | Msa0599040:intron | 35.0% | |
| GCACATTGTTCACAAATAGA+TGG | - | chr4_2:37023076-37023095 | Msa0599040:five_prime_UTR | 35.0% | |
| CATTGTTCACAAATAGATGG+TGG | - | chr4_2:37023079-37023098 | Msa0599040:five_prime_UTR | 35.0% | |
| ! | TTAAGCATCTAAGGTAGCCA+TGG | - | chr4_2:37019883-37019902 | Msa0599040:three_prime_UTR | 40.0% |
| TATATTACCTCAAGACGTGG+TGG | + | chr4_2:37019923-37019942 | None:intergenic | 40.0% | |
| !! | ATGGTGATTTGCTGGTTTCT+TGG | - | chr4_2:37020017-37020036 | Msa0599040:CDS | 40.0% |
| !! | ATTTGCTGGTTTCTTGGCAT+TGG | - | chr4_2:37020023-37020042 | Msa0599040:intron | 40.0% |
| !! | TTTGCTGGTTTCTTGGCATT+GGG | - | chr4_2:37020024-37020043 | Msa0599040:intron | 40.0% |
| ! | GCACTCTTATTTAGTCGATG+TGG | + | chr4_2:37020268-37020287 | None:intergenic | 40.0% |
| AGTGCTTAAATCCTAACAGC+TGG | - | chr4_2:37020283-37020302 | Msa0599040:CDS | 40.0% | |
| !! | CAATAAAAGCACCAGCTGTT+AGG | + | chr4_2:37020297-37020316 | None:intergenic | 40.0% |
| ! | CTGGTGCTTTTATTGAGAGT+TGG | - | chr4_2:37020302-37020321 | Msa0599040:CDS | 40.0% |
| ACTATAGGTAACCCTTTCTG+TGG | + | chr4_2:37020329-37020348 | None:intergenic | 40.0% | |
| AGAAAGGGTTACCTATAGTC+TGG | - | chr4_2:37020330-37020349 | Msa0599040:CDS | 40.0% | |
| TTCACCCACCTATCAGTATT+CGG | + | chr4_2:37020370-37020389 | None:intergenic | 40.0% | |
| ! | CACAACGGTTTTCACTCTAT+CGG | + | chr4_2:37020429-37020448 | None:intergenic | 40.0% |
| ! | CAAAAGACTAGTCCATTAGG+GGG | + | chr4_2:37020550-37020569 | None:intergenic | 40.0% |
| ! | CCAAAAGACTAGTCCATTAG+GGG | + | chr4_2:37020551-37020570 | None:intergenic | 40.0% |
| ! | CCCAAAAGACTAGTCCATTA+GGG | + | chr4_2:37020552-37020571 | None:intergenic | 40.0% |
| !!! | CCCTAATGGACTAGTCTTTT+GGG | - | chr4_2:37020549-37020568 | Msa0599040:CDS | 40.0% |
| ! | ACCCAAAAGACTAGTCCATT+AGG | + | chr4_2:37020553-37020572 | None:intergenic | 40.0% |
| !!! | AATGGACTAGTCTTTTGGGT+TGG | - | chr4_2:37020553-37020572 | Msa0599040:CDS | 40.0% |
| !!! | ATGGACTAGTCTTTTGGGTT+GGG | - | chr4_2:37020554-37020573 | Msa0599040:CDS | 40.0% |
| !! | GCCAGTTTTGTAAGTTGAGT+TGG | - | chr4_2:37020754-37020773 | Msa0599040:CDS | 40.0% |
| CCCAACTCAACTTACAAAAC+TGG | + | chr4_2:37020758-37020777 | None:intergenic | 40.0% | |
| CACATCGCTAGTGACAATAT+CGG | + | chr4_2:37021195-37021214 | None:intergenic | 40.0% | |
| ! | AAGGATGGTATTTCTGCACA+AGG | + | chr4_2:37021262-37021281 | None:intergenic | 40.0% |
| TGCAGAAATACCATCCTTCT+AGG | - | chr4_2:37021264-37021283 | Msa0599040:intron | 40.0% | |
| GCAGAAATACCATCCTTCTA+GGG | - | chr4_2:37021265-37021284 | Msa0599040:intron | 40.0% | |
| ACAATGGTAAGTACCCTAGA+AGG | + | chr4_2:37021281-37021300 | None:intergenic | 40.0% | |
| !!! | CCTCAGTCTTGTACTGATTT+TGG | + | chr4_2:37021354-37021373 | None:intergenic | 40.0% |
| CCAAAATCAGTACAAGACTG+AGG | - | chr4_2:37021351-37021370 | Msa0599040:CDS | 40.0% | |
| !!! | GGATACACTGTCGTTTTCTT+TGG | - | chr4_2:37021383-37021402 | Msa0599040:CDS | 40.0% |
| TTAGCAACATCTGGTAAAGG+AGG | - | chr4_2:37021519-37021538 | Msa0599040:intron | 40.0% | |
| TAGCAACATCTGGTAAAGGA+GGG | - | chr4_2:37021520-37021539 | Msa0599040:intron | 40.0% | |
| ! | GGAGGGATTGGAACTTTTAT+TGG | - | chr4_2:37021537-37021556 | Msa0599040:intron | 40.0% |
| ATAGCTGATGCCCATATACA+AGG | - | chr4_2:37021588-37021607 | Msa0599040:CDS | 40.0% | |
| ATGCTGACCTGAATGAATTC+CGG | + | chr4_2:37021645-37021664 | None:intergenic | 40.0% | |
| AAGGACAACAGACACGAAAT+GGG | + | chr4_2:37021986-37022005 | None:intergenic | 40.0% | |
| TAAGGACAACAGACACGAAA+TGG | + | chr4_2:37021987-37022006 | None:intergenic | 40.0% | |
| AATAATCACGGTGGGAGTTA+AGG | + | chr4_2:37022005-37022024 | None:intergenic | 40.0% | |
| !!! | TGAAACAGTTTTGGATCCCT+CGG | + | chr4_2:37022177-37022196 | None:intergenic | 40.0% |
| ! | AAGATCGGCTGAAACAGTTT+TGG | + | chr4_2:37022186-37022205 | None:intergenic | 40.0% |
| AAACAGTACTATGTCAGGTG+AGG | + | chr4_2:37022228-37022247 | None:intergenic | 40.0% | |
| !! | GTTTTGAATCTTCCATGTCC+TGG | + | chr4_2:37022340-37022359 | None:intergenic | 40.0% |
| TCAAAACAACAGGATCGCAA+AGG | - | chr4_2:37022353-37022372 | Msa0599040:intron | 40.0% | |
| GTATCTTCTGATAAGAAGCC+AGG | + | chr4_2:37022458-37022477 | None:intergenic | 40.0% | |
| GGCTTCTTATCAGAAGATAC+CGG | - | chr4_2:37022458-37022477 | Msa0599040:intron | 40.0% | |
| TTTGCGGTGAAATAAAACGC+TGG | + | chr4_2:37022726-37022745 | None:intergenic | 40.0% | |
| TCCTTCTTAGGGTTATCCAA+TGG | - | chr4_2:37022780-37022799 | Msa0599040:intron | 40.0% | |
| ACCATTGGATAACCCTAAGA+AGG | + | chr4_2:37022784-37022803 | None:intergenic | 40.0% | |
| ACAGATAGTGAGGTAACCAT+TGG | + | chr4_2:37022799-37022818 | None:intergenic | 40.0% | |
| ! | GTTTTCACTTCTGCACCTAA+AGG | - | chr4_2:37022819-37022838 | Msa0599040:intron | 40.0% |
| TTCTGCACCTAAAGGTTACA+AGG | - | chr4_2:37022827-37022846 | Msa0599040:intron | 40.0% | |
| GGACCTGAACAAAATGCTTT+GGG | - | chr4_2:37022933-37022952 | Msa0599040:CDS | 40.0% | |
| TTCTTGGAGGTCTATTTGCA+GGG | - | chr4_2:37022976-37022995 | Msa0599040:intron | 40.0% | |
| ! | CTTGACTGGCTATGGTTAAT+AGG | - | chr4_2:37023005-37023024 | Msa0599040:intron | 40.0% |
| ! | ATGCAGCAATGGTGATTTGC+TGG | - | chr4_2:37020009-37020028 | Msa0599040:CDS | 45.0% |
| !! | TTGCTGGTTTCTTGGCATTG+GGG | - | chr4_2:37020025-37020044 | Msa0599040:intron | 45.0% |
| TGCTGCTACAACCTTGACTA+AGG | + | chr4_2:37020148-37020167 | None:intergenic | 45.0% | |
| AGTCGATGTGGGACTATAAC+AGG | + | chr4_2:37020256-37020275 | None:intergenic | 45.0% | |
| TTGAGAGTTGGACCACAGAA+AGG | - | chr4_2:37020314-37020333 | Msa0599040:CDS | 45.0% | |
| TGAGAGTTGGACCACAGAAA+GGG | - | chr4_2:37020315-37020334 | Msa0599040:CDS | 45.0% | |
| GTGTTCCACCGAATACTGAT+AGG | - | chr4_2:37020359-37020378 | Msa0599040:CDS | 45.0% | |
| TTCCACCGAATACTGATAGG+TGG | - | chr4_2:37020362-37020381 | Msa0599040:CDS | 45.0% | |
| TCCACCGAATACTGATAGGT+GGG | - | chr4_2:37020363-37020382 | Msa0599040:intron | 45.0% | |
| ATAGAGGAAAGGGCTACCAT+CGG | - | chr4_2:37020396-37020415 | Msa0599040:intron | 45.0% | |
| CGATAGAGTGAAAACCGTTG+TGG | - | chr4_2:37020427-37020446 | Msa0599040:intron | 45.0% | |
| !!! | CCCCTAATGGACTAGTCTTT+TGG | - | chr4_2:37020548-37020567 | Msa0599040:CDS | 45.0% |
| CTCATACTCAGGACTAAGAG+TGG | + | chr4_2:37020664-37020683 | None:intergenic | 45.0% | |
| CACTCTTAGTCCTGAGTATG+AGG | - | chr4_2:37020662-37020681 | Msa0599040:intron | 45.0% | |
| TCTTAGTCCTGAGTATGAGG+AGG | - | chr4_2:37020665-37020684 | Msa0599040:intron | 45.0% | |
| GTGTGTTGAGAGTCTCACAT+TGG | - | chr4_2:37020687-37020706 | Msa0599040:intron | 45.0% | |
| TGGTAAGTACCCTAGAAGGA+TGG | + | chr4_2:37021277-37021296 | None:intergenic | 45.0% | |
| ACAAGACTGAGGAACCTGTT+CGG | - | chr4_2:37021362-37021381 | Msa0599040:CDS | 45.0% | |
| AAACGACAGTGTATCCGAAC+AGG | + | chr4_2:37021379-37021398 | None:intergenic | 45.0% | |
| ACATCTGGTAAAGGAGGGAT+TGG | - | chr4_2:37021525-37021544 | Msa0599040:intron | 45.0% | |
| CACCATTCCGCCTTGTATAT+GGG | + | chr4_2:37021601-37021620 | None:intergenic | 45.0% | |
| CATATACAAGGCGGAATGGT+GGG | - | chr4_2:37021600-37021619 | Msa0599040:CDS | 45.0% | |
| AGACCTGTCTTACATGCTTC+CGG | - | chr4_2:37021623-37021642 | Msa0599040:CDS | 45.0% | |
| ! | ATTCCGGAAGCATGTAAGAC+AGG | + | chr4_2:37021629-37021648 | None:intergenic | 45.0% |
| CATGCTTCCGGAATTCATTC+AGG | - | chr4_2:37021635-37021654 | Msa0599040:CDS | 45.0% | |
| ACCAGGAGAATTCTCAAACG+CGG | + | chr4_2:37021815-37021834 | None:intergenic | 45.0% | |
| TGGCAAAGAACAGAACTGCA+GGG | + | chr4_2:37022061-37022080 | None:intergenic | 45.0% | |
| ATGGCAAAGAACAGAACTGC+AGG | + | chr4_2:37022062-37022081 | None:intergenic | 45.0% | |
| GAACGGTAGTACTTCACGAT+TGG | + | chr4_2:37022143-37022162 | None:intergenic | 45.0% | |
| ATGTGCTTCTTTCCAGGACA+TGG | - | chr4_2:37022325-37022344 | Msa0599040:intron | 45.0% | |
| GATACCGGATCACACAGTTT+AGG | - | chr4_2:37022473-37022492 | Msa0599040:intron | 45.0% | |
| GGTTCCTAAACTGTGTGATC+CGG | + | chr4_2:37022480-37022499 | None:intergenic | 45.0% | |
| GATCACACAGTTTAGGAACC+TGG | - | chr4_2:37022480-37022499 | Msa0599040:intron | 45.0% | |
| ACACAGTTTAGGAACCTGGT+AGG | - | chr4_2:37022484-37022503 | Msa0599040:intron | 45.0% | |
| ACCGCAAAGTATGGTAAGCA+GGG | - | chr4_2:37022738-37022757 | Msa0599040:intron | 45.0% | |
| TGCACCTAAAGGTTACAAGG+TGG | - | chr4_2:37022830-37022849 | Msa0599040:intron | 45.0% | |
| GCACCTAAAGGTTACAAGGT+GGG | - | chr4_2:37022831-37022850 | Msa0599040:intron | 45.0% | |
| AGACCCACCTTGTAACCTTT+AGG | + | chr4_2:37022837-37022856 | None:intergenic | 45.0% | |
| GTTACAAGGTGGGTCTGTTA+AGG | - | chr4_2:37022841-37022860 | Msa0599040:intron | 45.0% | |
| GGGACCTGAACAAAATGCTT+TGG | - | chr4_2:37022932-37022951 | Msa0599040:CDS | 45.0% | |
| CTTCTTGGAGGTCTATTTGC+AGG | - | chr4_2:37022975-37022994 | Msa0599040:intron | 45.0% | |
| TCTTGGAGGTCTATTTGCAG+GGG | - | chr4_2:37022977-37022996 | Msa0599040:intron | 45.0% | |
| TGGAGTCTCACTGATGACCA+TGG | + | chr4_2:37019903-37019922 | None:intergenic | 50.0% | |
| GCAGGGCAAATATGCAGCAA+TGG | - | chr4_2:37019998-37020017 | Msa0599040:CDS | 50.0% | |
| !! | TGCTGGTTTCTTGGCATTGG+GGG | - | chr4_2:37020026-37020045 | Msa0599040:intron | 50.0% |
| ACCCACCTATCAGTATTCGG+TGG | + | chr4_2:37020367-37020386 | None:intergenic | 50.0% | |
| TGAAGCCGCCATAGAGGAAA+GGG | - | chr4_2:37020386-37020405 | Msa0599040:intron | 50.0% | |
| GATGGTAGCCCTTTCCTCTA+TGG | + | chr4_2:37020397-37020416 | None:intergenic | 50.0% | |
| TAGAGGAAAGGGCTACCATC+GGG | - | chr4_2:37020397-37020416 | Msa0599040:intron | 50.0% | |
| AGTGAAAACCGTTGTGGACG+CGG | - | chr4_2:37020433-37020452 | Msa0599040:intron | 50.0% | |
| TTTAAGAGCCGCGTCCACAA+CGG | + | chr4_2:37020444-37020463 | None:intergenic | 50.0% | |
| TTGTGGACGCGGCTCTTAAA+GGG | - | chr4_2:37020444-37020463 | Msa0599040:intron | 50.0% | |
| !! | TTTGGGTTGGGTTCTCCTCA+TGG | - | chr4_2:37020566-37020585 | Msa0599040:CDS | 50.0% |
| !! | TTGGGTTGGGTTCTCCTCAT+GGG | - | chr4_2:37020567-37020586 | Msa0599040:CDS | 50.0% |
| CAACACACCTCCTCATACTC+AGG | + | chr4_2:37020675-37020694 | None:intergenic | 50.0% | |
| GTCACTAGCGATGTGATCGT+AGG | - | chr4_2:37021200-37021219 | Msa0599040:CDS | 50.0% | |
| GCTGATGCCCATATACAAGG+CGG | - | chr4_2:37021591-37021610 | Msa0599040:CDS | 50.0% | |
| TGCCCATATACAAGGCGGAA+TGG | - | chr4_2:37021596-37021615 | Msa0599040:CDS | 50.0% | |
| CCACCATTCCGCCTTGTATA+TGG | + | chr4_2:37021602-37021621 | None:intergenic | 50.0% | |
| CCATATACAAGGCGGAATGG+TGG | - | chr4_2:37021599-37021618 | Msa0599040:CDS | 50.0% | |
| TTGTTGCAGTCGTTCCTTGC+TGG | - | chr4_2:37021739-37021758 | Msa0599040:intron | 50.0% | |
| GCGTTTGAGAATTCTCCTGG+TGG | - | chr4_2:37021814-37021833 | Msa0599040:intron | 50.0% | |
| !!! | AACAGTTTTGGATCCCTCGG+AGG | + | chr4_2:37022174-37022193 | None:intergenic | 50.0% |
| GTACTATGTCAGGTGAGGTC+TGG | + | chr4_2:37022223-37022242 | None:intergenic | 50.0% | |
| CACCGCAAAGTATGGTAAGC+AGG | - | chr4_2:37022737-37022756 | Msa0599040:intron | 50.0% | |
| GCCCTGCTTACCATACTTTG+CGG | + | chr4_2:37022742-37022761 | None:intergenic | 50.0% | |
| CAAAGTATGGTAAGCAGGGC+TGG | - | chr4_2:37022742-37022761 | Msa0599040:intron | 50.0% | |
| TTGCAGGGGTAACACTTGAC+TGG | - | chr4_2:37022991-37023010 | Msa0599040:intron | 50.0% | |
| ! | GGGTAACACTTGACTGGCTA+TGG | - | chr4_2:37022997-37023016 | Msa0599040:intron | 50.0% |
| TGAGACTCCACCACGTCTTG+AGG | - | chr4_2:37019913-37019932 | Msa0599040:exon | 55.0% | |
| ! | GCATTGGGGGTCTTTTCGCT+TGG | - | chr4_2:37020039-37020058 | Msa0599040:intron | 55.0% |
| GTGAAGCCGCCATAGAGGAA+AGG | - | chr4_2:37020385-37020404 | Msa0599040:intron | 55.0% | |
| GGTAGCCCTTTCCTCTATGG+CGG | + | chr4_2:37020394-37020413 | None:intergenic | 55.0% | |
| GTTGTGGACGCGGCTCTTAA+AGG | - | chr4_2:37020443-37020462 | Msa0599040:intron | 55.0% | |
| ! | GACTAGTCCATTAGGGGGCA+CGG | + | chr4_2:37020545-37020564 | None:intergenic | 55.0% |
| GCCGCGTTTGAGAATTCTCC+TGG | - | chr4_2:37021811-37021830 | Msa0599040:intron | 55.0% | |
| TCTCCTGGTGGTCTTCGCAA+AGG | - | chr4_2:37021826-37021845 | Msa0599040:intron | 55.0% | |
| GATGCCAGCTGCAGCAAGAT+CGG | + | chr4_2:37022201-37022220 | None:intergenic | 55.0% | |
| !! | CTCTATCGGCACTGACCCGA+TGG | + | chr4_2:37020415-37020434 | None:intergenic | 60.0% |
| CAGACGCTGCAGAACCAGCA+AGG | + | chr4_2:37021756-37021775 | None:intergenic | 60.0% | |
| !! | CTTGCTGGTTCTGCAGCGTC+TGG | - | chr4_2:37021754-37021773 | Msa0599040:intron | 60.0% |
| GCTCCTTTGCGAAGACCACC+AGG | + | chr4_2:37021832-37021851 | None:intergenic | 60.0% | |
| ! | CCTCGGAGGCTGCTTTCGAA+CGG | + | chr4_2:37022160-37022179 | None:intergenic | 60.0% |
| CGTTCGAAAGCAGCCTCCGA+GGG | - | chr4_2:37022158-37022177 | Msa0599040:intron | 60.0% | |
| TCAGCCGATCTTGCTGCAGC+TGG | - | chr4_2:37022194-37022213 | Msa0599040:intron | 60.0% | |
| GGTGGGTGAAGCCGCCATAG+AGG | - | chr4_2:37020380-37020399 | Msa0599040:intron | 65.0% | |
| ! | CATTAGGGGGCACGGCCTCA+TGG | + | chr4_2:37020537-37020556 | None:intergenic | 65.0% |
| CATGAGGCCGTGCCCCCTAA+TGG | - | chr4_2:37020535-37020554 | Msa0599040:CDS | 65.0% | |
| CCGTTCGAAAGCAGCCTCCG+AGG | - | chr4_2:37022157-37022176 | Msa0599040:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 37019808 | 37023163 | 37019808 | ID=Msa0599040;Name=Msa0599040 |
| chr4_2 | mRNA | 37019808 | 37023163 | 37019808 | ID=Msa0599040-mRNA-1;Parent=Msa0599040;Name=Msa0599040-mRNA-1;_AED=0.10;_eAED=0.10;_QI=94|1|1|1|1|1|9|123|414 |
| chr4_2 | exon | 37019808 | 37020038 | 37019808 | ID=Msa0599040-mRNA-1:exon:8391;Parent=Msa0599040-mRNA-1 |
| chr4_2 | exon | 37020123 | 37020381 | 37020123 | ID=Msa0599040-mRNA-1:exon:8390;Parent=Msa0599040-mRNA-1 |
| chr4_2 | exon | 37020470 | 37020630 | 37020470 | ID=Msa0599040-mRNA-1:exon:8389;Parent=Msa0599040-mRNA-1 |
| chr4_2 | exon | 37020733 | 37020905 | 37020733 | ID=Msa0599040-mRNA-1:exon:8388;Parent=Msa0599040-mRNA-1 |
| chr4_2 | exon | 37021118 | 37021223 | 37021118 | ID=Msa0599040-mRNA-1:exon:8387;Parent=Msa0599040-mRNA-1 |
| chr4_2 | exon | 37021315 | 37021458 | 37021315 | ID=Msa0599040-mRNA-1:exon:8386;Parent=Msa0599040-mRNA-1 |
| chr4_2 | exon | 37021547 | 37021702 | 37021547 | ID=Msa0599040-mRNA-1:exon:8385;Parent=Msa0599040-mRNA-1 |
| chr4_2 | exon | 37022865 | 37022969 | 37022865 | ID=Msa0599040-mRNA-1:exon:8384;Parent=Msa0599040-mRNA-1 |
| chr4_2 | exon | 37023037 | 37023163 | 37023037 | ID=Msa0599040-mRNA-1:exon:8383;Parent=Msa0599040-mRNA-1 |
| chr4_2 | five_prime_UTR | 37023070 | 37023163 | 37023070 | ID=Msa0599040-mRNA-1:five_prime_utr;Parent=Msa0599040-mRNA-1 |
| chr4_2 | CDS | 37023037 | 37023069 | 37023037 | ID=Msa0599040-mRNA-1:cds;Parent=Msa0599040-mRNA-1 |
| chr4_2 | CDS | 37022865 | 37022969 | 37022865 | ID=Msa0599040-mRNA-1:cds;Parent=Msa0599040-mRNA-1 |
| chr4_2 | CDS | 37021547 | 37021702 | 37021547 | ID=Msa0599040-mRNA-1:cds;Parent=Msa0599040-mRNA-1 |
| chr4_2 | CDS | 37021315 | 37021458 | 37021315 | ID=Msa0599040-mRNA-1:cds;Parent=Msa0599040-mRNA-1 |
| chr4_2 | CDS | 37021118 | 37021223 | 37021118 | ID=Msa0599040-mRNA-1:cds;Parent=Msa0599040-mRNA-1 |
| chr4_2 | CDS | 37020733 | 37020905 | 37020733 | ID=Msa0599040-mRNA-1:cds;Parent=Msa0599040-mRNA-1 |
| chr4_2 | CDS | 37020470 | 37020630 | 37020470 | ID=Msa0599040-mRNA-1:cds;Parent=Msa0599040-mRNA-1 |
| chr4_2 | CDS | 37020123 | 37020381 | 37020123 | ID=Msa0599040-mRNA-1:cds;Parent=Msa0599040-mRNA-1 |
| chr4_2 | CDS | 37019931 | 37020038 | 37019931 | ID=Msa0599040-mRNA-1:cds;Parent=Msa0599040-mRNA-1 |
| chr4_2 | three_prime_UTR | 37019808 | 37019930 | 37019808 | ID=Msa0599040-mRNA-1:three_prime_utr;Parent=Msa0599040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
