Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0736000 | AES99078.2 | 81.969 | 843 | 104 | 6 | 1 | 824 | 1 | 814 | 0.0 | 1389 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0736000 | sp|Q00416|SEN1_YEAST | 28.594 | 633 | 339 | 21 | 239 | 835 | 1279 | 1834 | 1.14e-48 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0736000 | G7KFP1 | 81.969 | 843 | 104 | 6 | 1 | 824 | 1 | 814 | 0.0 | 1389 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0736000 | 0.813217 | 2.861774e-51 | -8.615850e-47 |
| Msa0111510 | Msa0736000 | 0.801736 | 7.821973e-49 | -8.615850e-47 |
| Msa0657970 | Msa0736000 | 0.828185 | 1.034846e-54 | -8.615850e-47 |
| Msa0661870 | Msa0736000 | 0.808772 | 2.628212e-50 | -8.615850e-47 |
| Msa0678930 | Msa0736000 | 0.812355 | 4.420648e-51 | -8.615850e-47 |
| Msa0697060 | Msa0736000 | 0.810656 | 1.034066e-50 | -8.615850e-47 |
| Msa0726140 | Msa0736000 | 0.818178 | 2.244466e-52 | -8.615850e-47 |
| Msa0736000 | Msa0766630 | 0.818875 | 1.559753e-52 | -8.615850e-47 |
| Msa0736000 | Msa0777790 | 0.922601 | 7.955893e-89 | -8.615850e-47 |
| Msa0736000 | Msa0777850 | 0.919167 | 6.315894e-87 | -8.615850e-47 |
| Msa0736000 | Msa0777930 | 0.809534 | 1.804534e-50 | -8.615850e-47 |
| Msa0736000 | Msa0789250 | 0.806295 | 8.814921e-50 | -8.615850e-47 |
| Msa0736000 | Msa0811080 | 0.845086 | 5.055517e-59 | -8.615850e-47 |
| Msa0736000 | Msa0814940 | 0.802931 | 4.438142e-49 | -8.615850e-47 |
| Msa0736000 | Msa0815080 | 0.849877 | 2.438615e-60 | -8.615850e-47 |
| Msa0736000 | Msa0815120 | 0.826559 | 2.538288e-54 | -8.615850e-47 |
| Msa0736000 | Msa0815140 | 0.876094 | 1.834810e-68 | -8.615850e-47 |
| Msa0736000 | Msa0858840 | 0.800545 | 1.370944e-48 | -8.615850e-47 |
| Msa0736000 | Msa0880140 | 0.811687 | 6.181411e-51 | -8.615850e-47 |
| Msa0736000 | Msa0885280 | 0.807312 | 5.376003e-50 | -8.615850e-47 |
| Msa0736000 | Msa0885290 | 0.813343 | 2.685936e-51 | -8.615850e-47 |
| Msa0736000 | Msa0887990 | 0.801400 | 9.168271e-49 | -8.615850e-47 |
| Msa0736000 | Msa0909120 | 0.818135 | 2.295500e-52 | -8.615850e-47 |
| Msa0736000 | Msa0909140 | 0.800837 | 1.194793e-48 | -8.615850e-47 |
| Msa0736000 | Msa1014540 | 0.818108 | 2.327477e-52 | -8.615850e-47 |
| Msa0736000 | Msa1024240 | 0.828789 | 7.396605e-55 | -8.615850e-47 |
| Msa0736000 | Msa1084240 | 0.808342 | 3.246633e-50 | -8.615850e-47 |
| Msa0736000 | Msa1092990 | 0.806953 | 6.403971e-50 | -8.615850e-47 |
| Msa0736000 | Msa1136090 | 0.800199 | 1.612106e-48 | -8.615850e-47 |
| Msa0736000 | Msa1160670 | 0.826737 | 2.301845e-54 | -8.615850e-47 |
| Msa0736000 | Msa1187940 | 0.820392 | 7.026648e-53 | -8.615850e-47 |
| Msa0736000 | Msa1251910 | 0.800356 | 1.497942e-48 | -8.615850e-47 |
| Msa0736000 | Msa1283860 | 0.809597 | 1.749057e-50 | -8.615850e-47 |
| Msa0736000 | Msa1324780 | 0.812737 | 3.646594e-51 | -8.615850e-47 |
| Msa0736000 | Msa1373010 | 0.810276 | 1.249021e-50 | -8.615850e-47 |
| Msa0736000 | Msa1373030 | 0.806531 | 7.861082e-50 | -8.615850e-47 |
| Msa0736000 | Msa1438250 | 0.859207 | 4.851434e-63 | -8.615850e-47 |
| Msa0736000 | Msa1453720 | 0.801304 | 9.591160e-49 | -8.615850e-47 |
| Msa0142220 | Msa0736000 | 0.805793 | 1.124387e-49 | -8.615850e-47 |
| Msa0153910 | Msa0736000 | 0.811106 | 8.265666e-51 | -8.615850e-47 |
| Msa0157290 | Msa0736000 | 0.812387 | 4.350010e-51 | -8.615850e-47 |
| Msa0235140 | Msa0736000 | 0.815778 | 7.766459e-52 | -8.615850e-47 |
| Msa0406120 | Msa0736000 | 0.812285 | 4.579667e-51 | -8.615850e-47 |
| Msa0437990 | Msa0736000 | 0.808626 | 2.824267e-50 | -8.615850e-47 |
| Msa0452620 | Msa0736000 | 0.805025 | 1.628697e-49 | -8.615850e-47 |
| Msa0502270 | Msa0736000 | 0.817091 | 3.946801e-52 | -8.615850e-47 |
| Msa0512900 | Msa0736000 | 0.805496 | 1.297954e-49 | -8.615850e-47 |
| Msa0558640 | Msa0736000 | 0.803677 | 3.110523e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0736000 | MtrunA17_Chr5g0433361 | 81.969 | 843 | 104 | 6 | 1 | 824 | 1 | 814 | 0.0 | 1389 |
| Msa0736000 | MtrunA17_Chr5g0433471 | 55.955 | 890 | 249 | 14 | 17 | 824 | 15 | 843 | 0.0 | 903 |
| Msa0736000 | MtrunA17_Chr3g0109541 | 48.664 | 898 | 317 | 18 | 14 | 824 | 4 | 844 | 0.0 | 754 |
| Msa0736000 | MtrunA17_Chr5g0433321 | 48.914 | 875 | 304 | 15 | 22 | 824 | 17 | 820 | 0.0 | 749 |
| Msa0736000 | MtrunA17_Chr5g0433371 | 48.735 | 909 | 307 | 17 | 5 | 824 | 6 | 844 | 0.0 | 738 |
| Msa0736000 | MtrunA17_Chr5g0433351 | 64.133 | 513 | 132 | 8 | 10 | 514 | 2 | 470 | 0.0 | 614 |
| Msa0736000 | MtrunA17_Chr5g0433421 | 68.074 | 379 | 95 | 4 | 461 | 824 | 561 | 928 | 1.04e-161 | 497 |
| Msa0736000 | MtrunA17_Chr5g0433421 | 59.556 | 450 | 119 | 9 | 1 | 447 | 1 | 390 | 3.57e-157 | 485 |
| Msa0736000 | MtrunA17_Chr5g0433511 | 59.729 | 442 | 116 | 8 | 22 | 447 | 12 | 407 | 5.20e-154 | 474 |
| Msa0736000 | MtrunA17_Chr5g0433511 | 68.362 | 354 | 86 | 6 | 461 | 799 | 495 | 837 | 9.12e-148 | 458 |
| Msa0736000 | MtrunA17_Chr3g0094211 | 35.086 | 875 | 429 | 25 | 15 | 824 | 11 | 811 | 1.82e-151 | 470 |
| Msa0736000 | MtrunA17_Chr8g0375181 | 35.528 | 881 | 430 | 25 | 18 | 824 | 79 | 895 | 1.06e-141 | 464 |
| Msa0736000 | MtrunA17_Chr8g0375191 | 34.411 | 866 | 444 | 26 | 16 | 824 | 20 | 818 | 8.69e-133 | 438 |
| Msa0736000 | MtrunA17_Chr8g0375151 | 35.343 | 846 | 409 | 26 | 51 | 824 | 8 | 787 | 2.50e-129 | 428 |
| Msa0736000 | MtrunA17_Chr5g0433341 | 84.324 | 185 | 27 | 2 | 551 | 734 | 2 | 185 | 2.95e-103 | 317 |
| Msa0736000 | MtrunA17_Chr3g0109551 | 46.272 | 389 | 176 | 5 | 461 | 824 | 499 | 879 | 1.01e-101 | 340 |
| Msa0736000 | MtrunA17_Chr3g0109551 | 39.130 | 437 | 215 | 7 | 25 | 457 | 16 | 405 | 7.15e-81 | 282 |
| Msa0736000 | MtrunA17_Chr5g0433331 | 83.721 | 86 | 14 | 0 | 739 | 824 | 1 | 86 | 5.23e-42 | 150 |
| Msa0736000 | MtrunA17_Chr8g0343741 | 38.652 | 282 | 153 | 8 | 551 | 823 | 962 | 1232 | 1.54e-40 | 162 |
| Msa0736000 | MtrunA17_Chr5g0422511 | 34.615 | 286 | 179 | 5 | 559 | 839 | 455 | 737 | 1.94e-39 | 157 |
| Msa0736000 | MtrunA17_Chr8g0375871 | 28.733 | 442 | 258 | 12 | 3 | 442 | 4 | 390 | 8.60e-38 | 153 |
| Msa0736000 | MtrunA17_Chr8g0375871 | 42.857 | 140 | 70 | 5 | 522 | 660 | 529 | 659 | 1.19e-21 | 101 |
| Msa0736000 | MtrunA17_Chr8g0375861 | 28.733 | 442 | 258 | 12 | 3 | 442 | 4 | 390 | 8.69e-38 | 153 |
| Msa0736000 | MtrunA17_Chr8g0375861 | 42.857 | 140 | 70 | 5 | 522 | 660 | 529 | 659 | 1.24e-21 | 101 |
| Msa0736000 | MtrunA17_Chr1g0173701 | 35.865 | 237 | 148 | 4 | 593 | 827 | 108 | 342 | 5.41e-37 | 144 |
| Msa0736000 | MtrunA17_Chr2g0334291 | 28.376 | 511 | 308 | 15 | 354 | 839 | 1577 | 2054 | 6.60e-36 | 147 |
| Msa0736000 | MtrunA17_Chr5g0400101 | 36.508 | 252 | 152 | 5 | 587 | 835 | 641 | 887 | 1.15e-34 | 143 |
| Msa0736000 | MtrunA17_Chr3g0117771 | 35.897 | 234 | 87 | 6 | 43 | 273 | 124 | 297 | 7.73e-31 | 123 |
| Msa0736000 | MtrunA17_Chr7g0257921 | 37.063 | 286 | 130 | 12 | 560 | 823 | 348 | 605 | 3.26e-29 | 124 |
| Msa0736000 | MtrunA17_Chr1g0165651 | 32.414 | 290 | 163 | 11 | 553 | 823 | 624 | 899 | 1.40e-25 | 113 |
| Msa0736000 | MtrunA17_Chr5g0394941 | 33.463 | 257 | 137 | 9 | 587 | 822 | 541 | 784 | 2.11e-21 | 100 |
| Msa0736000 | MtrunA17_Chr2g0304151 | 33.463 | 257 | 137 | 9 | 587 | 822 | 541 | 784 | 2.31e-21 | 100 |
| Msa0736000 | MtrunA17_Chr1g0165031 | 25.800 | 531 | 306 | 22 | 328 | 823 | 892 | 1369 | 5.14e-19 | 92.8 |
| Msa0736000 | MtrunA17_Chr4g0030281 | 43.243 | 111 | 52 | 2 | 43 | 153 | 329 | 428 | 4.48e-18 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0736000 | AT1G65810.3 | 45.278 | 826 | 374 | 18 | 22 | 824 | 22 | 792 | 0.0 | 632 |
| Msa0736000 | AT1G65810.1 | 45.278 | 826 | 374 | 18 | 22 | 824 | 22 | 792 | 0.0 | 632 |
| Msa0736000 | AT1G65810.2 | 45.278 | 826 | 374 | 18 | 22 | 824 | 22 | 792 | 0.0 | 632 |
| Msa0736000 | AT1G65780.1 | 40.000 | 870 | 382 | 17 | 22 | 824 | 11 | 807 | 0.0 | 558 |
| Msa0736000 | AT5G37140.1 | 47.528 | 627 | 269 | 17 | 241 | 824 | 12 | 621 | 8.29e-173 | 516 |
| Msa0736000 | AT5G52090.1 | 46.677 | 617 | 279 | 17 | 246 | 824 | 1 | 605 | 2.52e-168 | 504 |
| Msa0736000 | AT4G05540.1 | 44.828 | 638 | 282 | 15 | 242 | 824 | 50 | 672 | 2.98e-165 | 496 |
| Msa0736000 | AT5G37150.1 | 45.338 | 622 | 288 | 16 | 241 | 824 | 161 | 768 | 4.03e-163 | 496 |
| Msa0736000 | AT5G37150.1 | 40.816 | 147 | 72 | 5 | 18 | 164 | 5 | 136 | 2.51e-20 | 97.1 |
| Msa0736000 | AT5G37165.1 | 50.975 | 359 | 163 | 9 | 475 | 824 | 1 | 355 | 3.10e-109 | 342 |
| Msa0736000 | AT5G37030.1 | 60.569 | 246 | 96 | 1 | 580 | 824 | 344 | 589 | 1.29e-96 | 315 |
| Msa0736000 | AT5G37030.1 | 50.000 | 156 | 73 | 3 | 300 | 453 | 198 | 350 | 2.78e-29 | 124 |
| Msa0736000 | AT5G37030.1 | 39.706 | 136 | 73 | 3 | 18 | 153 | 5 | 131 | 1.66e-18 | 90.9 |
| Msa0736000 | AT4G15570.2 | 28.333 | 540 | 302 | 17 | 304 | 827 | 167 | 637 | 1.79e-46 | 178 |
| Msa0736000 | AT4G15570.4 | 28.333 | 540 | 302 | 17 | 304 | 827 | 167 | 637 | 1.79e-46 | 178 |
| Msa0736000 | AT4G15570.3 | 28.333 | 540 | 302 | 17 | 304 | 827 | 256 | 726 | 2.84e-46 | 178 |
| Msa0736000 | AT4G15570.1 | 28.333 | 540 | 302 | 17 | 304 | 827 | 256 | 726 | 2.84e-46 | 178 |
| Msa0736000 | AT5G37160.1 | 40.260 | 231 | 107 | 4 | 242 | 442 | 180 | 409 | 2.48e-40 | 155 |
| Msa0736000 | AT5G37160.1 | 36.552 | 145 | 74 | 6 | 28 | 167 | 24 | 155 | 5.93e-14 | 75.5 |
| Msa0736000 | AT2G19120.1 | 37.050 | 278 | 163 | 7 | 551 | 823 | 742 | 1012 | 1.25e-39 | 159 |
| Msa0736000 | AT4G30100.2 | 35.484 | 279 | 166 | 8 | 551 | 823 | 905 | 1175 | 8.31e-37 | 150 |
| Msa0736000 | AT4G30100.1 | 35.484 | 279 | 166 | 8 | 551 | 823 | 905 | 1175 | 8.31e-37 | 150 |
| Msa0736000 | AT1G16800.2 | 34.657 | 277 | 163 | 7 | 566 | 829 | 1697 | 1968 | 1.19e-34 | 144 |
| Msa0736000 | AT1G16800.3 | 34.657 | 277 | 163 | 7 | 566 | 829 | 1627 | 1898 | 1.52e-34 | 143 |
| Msa0736000 | AT1G16800.1 | 34.657 | 277 | 163 | 7 | 566 | 829 | 1585 | 1856 | 1.86e-34 | 143 |
| Msa0736000 | AT5G47010.1 | 35.714 | 252 | 154 | 5 | 587 | 835 | 653 | 899 | 9.21e-34 | 140 |
| Msa0736000 | AT2G03270.1 | 35.612 | 278 | 151 | 13 | 558 | 823 | 339 | 600 | 8.00e-26 | 114 |
| Msa0736000 | AT5G35970.1 | 33.798 | 287 | 157 | 12 | 559 | 826 | 638 | 910 | 1.05e-24 | 111 |
| Msa0736000 | AT1G05460.2 | 32.812 | 256 | 141 | 9 | 587 | 822 | 542 | 786 | 8.60e-21 | 98.6 |
| Msa0736000 | AT1G05460.1 | 32.296 | 257 | 141 | 9 | 587 | 822 | 542 | 786 | 1.15e-20 | 98.6 |
| Msa0736000 | AT2G38770.1 | 33.333 | 252 | 141 | 11 | 587 | 823 | 1120 | 1359 | 4.08e-18 | 90.5 |
| Msa0736000 | AT1G08840.3 | 26.740 | 273 | 152 | 9 | 588 | 835 | 1053 | 1302 | 8.37e-15 | 79.7 |
| Msa0736000 | AT1G08840.4 | 26.740 | 273 | 152 | 9 | 588 | 835 | 1050 | 1299 | 8.81e-15 | 79.7 |
| Msa0736000 | AT1G08840.2 | 26.740 | 273 | 152 | 9 | 588 | 835 | 1037 | 1286 | 9.00e-15 | 79.3 |
| Msa0736000 | AT1G08840.1 | 26.740 | 273 | 152 | 9 | 588 | 835 | 1018 | 1267 | 9.51e-15 | 79.3 |
Find 159 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAGTCATTTAAGCTTTC+AGG | 0.127572 | 5_1:+51794440 | None:intergenic |
| AACATTCAAACATATTAATT+TGG | 0.175529 | 5_1:+51791731 | None:intergenic |
| TTTGAATACAAGAAGATATT+TGG | 0.191015 | 5_1:-51793358 | Msa0736000:CDS |
| ATGCTGATATCAAACTTATA+TGG | 0.207233 | 5_1:-51793756 | Msa0736000:CDS |
| TTAGTCTCCCATCCAGTATT+TGG | 0.221963 | 5_1:+51793451 | None:intergenic |
| TTAGGTGACATTGTGCTATT+TGG | 0.241240 | 5_1:-51793565 | Msa0736000:CDS |
| TGCACTGGCTTCACCTTTGC+TGG | 0.242919 | 5_1:+51792998 | None:intergenic |
| ATCCTCTTCACTTTCATTAC+TGG | 0.258255 | 5_1:+51795423 | None:intergenic |
| GTAAATGTTCGTTCTGTTGA+TGG | 0.259767 | 5_1:-51792199 | Msa0736000:CDS |
| AATTAATATGTTTGAATGTT+TGG | 0.263791 | 5_1:-51791728 | Msa0736000:three_prime_UTR |
| TGCTCAAGTTTATGAAATTC+AGG | 0.269725 | 5_1:-51792266 | Msa0736000:CDS |
| TCATGTGTGAGGTTGATTTC+AGG | 0.280798 | 5_1:+51794105 | None:intergenic |
| ATTCTTTCAGTCGTTGAATC+TGG | 0.291715 | 5_1:+51791837 | None:intergenic |
| CTCATGTCAATGTTAAATTT+AGG | 0.292464 | 5_1:+51793115 | None:intergenic |
| TCTGATGAAGTTGAAAATAT+TGG | 0.296974 | 5_1:-51794512 | Msa0736000:CDS |
| ACGGCGTTTAGGAGGGAAAA+TGG | 0.297803 | 5_1:-51791795 | Msa0736000:three_prime_UTR |
| AGATACTGTCTTTGGATATT+AGG | 0.305787 | 5_1:-51791989 | Msa0736000:CDS |
| TCATAAACTTGAGCATTATA+TGG | 0.306286 | 5_1:+51792274 | None:intergenic |
| AGGCGATACGGTAGGGGTTT+TGG | 0.316658 | 5_1:+51794411 | None:intergenic |
| CAATGCTTTCATCCAAATAC+TGG | 0.327523 | 5_1:-51793463 | Msa0736000:CDS |
| AGCTTGAAACAGCATCTTCT+TGG | 0.329857 | 5_1:+51793803 | None:intergenic |
| GATCATGATACATATGGTTT+AGG | 0.333976 | 5_1:-51793583 | Msa0736000:CDS |
| ATAGCAGACCAATGTGAATT+TGG | 0.341801 | 5_1:-51792761 | Msa0736000:CDS |
| AATATCCATCTTCATGCAAT+TGG | 0.341818 | 5_1:+51794271 | None:intergenic |
| ATGAAGGTAGATCGACTATC+TGG | 0.349186 | 5_1:+51793868 | None:intergenic |
| TTTGTTAGCAAATTTCTTCA+TGG | 0.353735 | 5_1:+51793399 | None:intergenic |
| ATGTCTCATTTCATTGGAAA+TGG | 0.356476 | 5_1:-51793278 | Msa0736000:CDS |
| CTTGATTTGCTAAGGTCTCT+TGG | 0.362091 | 5_1:-51793235 | Msa0736000:CDS |
| AAGGTCTCTTGGAAATTCCT+TGG | 0.364902 | 5_1:-51793224 | Msa0736000:CDS |
| TGCAAAATTGCAGTATTAGT+TGG | 0.368307 | 5_1:+51793646 | None:intergenic |
| TAATCAACAGTGACTCTGTT+TGG | 0.369827 | 5_1:-51791952 | Msa0736000:exon |
| CCTAAACGCCGTTTCTTGAA+TGG | 0.370619 | 5_1:+51791806 | None:intergenic |
| CCATTCAAGAAACGGCGTTT+AGG | 0.370861 | 5_1:-51791806 | Msa0736000:three_prime_UTR |
| AGGTCTCTTGGAAATTCCTT+GGG | 0.371531 | 5_1:-51793223 | Msa0736000:CDS |
| ACATTATTGATCTCACAAAA+AGG | 0.373241 | 5_1:+51794626 | None:intergenic |
| TGCTGATATCAAACTTATAT+GGG | 0.374218 | 5_1:-51793755 | Msa0736000:CDS |
| GCCAACATGTCTCATTTCAT+TGG | 0.376355 | 5_1:-51793284 | Msa0736000:CDS |
| CATTTGTTGTCATGTTCATA+AGG | 0.383088 | 5_1:+51794144 | None:intergenic |
| TCATTGCTTTCACACACATT+AGG | 0.388248 | 5_1:-51794463 | Msa0736000:CDS |
| AATATTCATCTTCATGCATT+CGG | 0.392803 | 5_1:+51794214 | None:intergenic |
| TCACTTGATCATGATACATA+TGG | 0.393125 | 5_1:-51793589 | Msa0736000:CDS |
| TATCTGATGCTCCCATTGTC+AGG | 0.393935 | 5_1:-51792619 | Msa0736000:CDS |
| AAGAGTACATTTCTCCTTCA+AGG | 0.396644 | 5_1:+51792573 | None:intergenic |
| AGTTATTGATGCTAAGAATA+GGG | 0.406528 | 5_1:-51791921 | Msa0736000:three_prime_UTR |
| ATATCTACCGTGAGATCTAA+TGG | 0.406558 | 5_1:-51792145 | Msa0736000:CDS |
| CATGTGTGAGGTTGATTTCA+GGG | 0.407399 | 5_1:+51794106 | None:intergenic |
| TGTTGGCATGTGTGTGTGTA+AGG | 0.413125 | 5_1:+51793300 | None:intergenic |
| GCTTGAAACAGCATCTTCTT+GGG | 0.426070 | 5_1:+51793804 | None:intergenic |
| TAGTTATTGATGCTAAGAAT+AGG | 0.429708 | 5_1:-51791922 | Msa0736000:three_prime_UTR |
| AAGTCTGAAGAACATGGTTC+AGG | 0.431895 | 5_1:-51792498 | Msa0736000:CDS |
| GTTGTCTCTCATCTCCGATT+AGG | 0.431949 | 5_1:+51792891 | None:intergenic |
| AATATAATTAAAACAGTGTT+GGG | 0.435420 | 5_1:-51794083 | Msa0736000:CDS |
| CTCCACCGTTGCATCCTAAT+CGG | 0.437172 | 5_1:-51792905 | Msa0736000:CDS |
| TCGGTTGCATAGGTTAGTTA+TGG | 0.440947 | 5_1:-51793614 | Msa0736000:CDS |
| GTGGCTGACTTAAACGTCTC+TGG | 0.444543 | 5_1:+51794734 | None:intergenic |
| GGAAATTATAAACCTGTGTC+AGG | 0.444557 | 5_1:-51794491 | Msa0736000:CDS |
| GCTAAGGGTAAAGAGCAATT+TGG | 0.445056 | 5_1:-51792530 | Msa0736000:CDS |
| CTTGATTACCTTCTTAACAT+AGG | 0.451230 | 5_1:+51794391 | None:intergenic |
| AGAAAGACATTGACAAGGCC+TGG | 0.454988 | 5_1:+51793511 | None:intergenic |
| TTCGCACGGGAATAAGCTAA+TGG | 0.459341 | 5_1:+51792661 | None:intergenic |
| TACAGTTCCATCATGACATA+TGG | 0.461642 | 5_1:-51794553 | Msa0736000:CDS |
| GACATTGTGCTATTTGGAAA+TGG | 0.464393 | 5_1:-51793559 | Msa0736000:CDS |
| ATATGGGGACCACCAGGGAC+AGG | 0.468887 | 5_1:-51793739 | Msa0736000:CDS |
| TAGCTTTCTTCCCTGACAAT+GGG | 0.469265 | 5_1:+51792608 | None:intergenic |
| ATCATCCAATTGCATGAAGA+TGG | 0.477710 | 5_1:-51794276 | Msa0736000:CDS |
| GTTTGAAAGACTTGTAATGT+TGG | 0.480465 | 5_1:-51792729 | Msa0736000:CDS |
| AACAATTCCATTACAGCTGT+CGG | 0.482727 | 5_1:-51792930 | Msa0736000:CDS |
| TGGAGACCCGACAGCTGTAA+TGG | 0.484216 | 5_1:+51792923 | None:intergenic |
| GAATATAATTAAAACAGTGT+TGG | 0.489127 | 5_1:-51794084 | Msa0736000:CDS |
| TTCAAGCTCTTGATTTGCTA+AGG | 0.490192 | 5_1:-51793243 | Msa0736000:CDS |
| TGCTATTTGGAAATGGTAAG+AGG | 0.490292 | 5_1:-51793552 | Msa0736000:CDS |
| AGCTATGTTAATAAAAGAAT+AGG | 0.495035 | 5_1:+51792550 | None:intergenic |
| TTCAAGAAACGGCGTTTAGG+AGG | 0.495052 | 5_1:-51791803 | Msa0736000:three_prime_UTR |
| AACAAATGTGGCTATGACTA+GGG | 0.495248 | 5_1:-51792086 | Msa0736000:CDS |
| GGAGTTCAGCAACTCTATCA+TGG | 0.495440 | 5_1:+51793420 | None:intergenic |
| ATAATTAAAAGTCTTTATGA+AGG | 0.499892 | 5_1:-51792458 | Msa0736000:intron |
| CATGATGGAACTGTATGAAT+TGG | 0.504598 | 5_1:+51794561 | None:intergenic |
| TTTGAAAGACTTGTAATGTT+GGG | 0.506742 | 5_1:-51792728 | Msa0736000:CDS |
| CGGCGTTTAGGAGGGAAAAT+GGG | 0.506969 | 5_1:-51791794 | Msa0736000:three_prime_UTR |
| TTGAGTCACCATTCAAGAAA+CGG | 0.508950 | 5_1:-51791814 | Msa0736000:three_prime_UTR |
| TTAACATAGGCGATACGGTA+GGG | 0.510070 | 5_1:+51794404 | None:intergenic |
| GAACAAATGTGGCTATGACT+AGG | 0.512010 | 5_1:-51792087 | Msa0736000:CDS |
| TGTCAATGTTAAATTTAGGA+AGG | 0.513940 | 5_1:+51793119 | None:intergenic |
| CTTGAATTTGGCTTGCCCCA+AGG | 0.515997 | 5_1:+51793207 | None:intergenic |
| CCGTGCGAAGAGTTCTATGA+TGG | 0.516329 | 5_1:-51792647 | Msa0736000:CDS |
| ACCGTGAGATCTAATGGTAC+TGG | 0.518270 | 5_1:-51792139 | Msa0736000:CDS |
| CCGTATCGCCTATGTTAAGA+AGG | 0.518702 | 5_1:-51794399 | Msa0736000:CDS |
| CTATGTTAAGAAGGTAATCA+AGG | 0.526997 | 5_1:-51794390 | Msa0736000:CDS |
| AAGGTAATCAAGGCAAGGAA+TGG | 0.530345 | 5_1:-51794380 | Msa0736000:CDS |
| TCCAATGAAATGAGACATGT+TGG | 0.531006 | 5_1:+51793283 | None:intergenic |
| TCGAGGATGTTGTACTCTCA+TGG | 0.532307 | 5_1:-51795369 | Msa0736000:CDS |
| ACAATTCCATTACAGCTGTC+GGG | 0.533970 | 5_1:-51792929 | Msa0736000:CDS |
| CCTTCTTAACATAGGCGATA+CGG | 0.534776 | 5_1:+51794399 | None:intergenic |
| AAACTTATATGGGGACCACC+AGG | 0.535882 | 5_1:-51793745 | Msa0736000:CDS |
| ACAGAACATTCTTAATAGCC+CGG | 0.537690 | 5_1:+51791861 | None:intergenic |
| TGAATGTTTGGATGAGCGAT+GGG | 0.538407 | 5_1:-51791716 | Msa0736000:three_prime_UTR |
| GTCAATGTTAAATTTAGGAA+GGG | 0.543604 | 5_1:+51793120 | None:intergenic |
| GTCATGCAAATGCATGAAGA+TGG | 0.544816 | 5_1:-51794333 | Msa0736000:CDS |
| TCTAATGGTACTGGTGATGT+TGG | 0.546314 | 5_1:-51792130 | Msa0736000:CDS |
| GCTTTCATCCAAATACTGGA+TGG | 0.546705 | 5_1:-51793459 | Msa0736000:CDS |
| AGGTGGCAATTCGGTTGCAT+AGG | 0.549979 | 5_1:-51793624 | Msa0736000:CDS |
| TTGTTTCCACAATGCTGAAG+AGG | 0.550324 | 5_1:-51791897 | Msa0736000:three_prime_UTR |
| AGGAAATTGAGCAGTACACT+CGG | 0.550497 | 5_1:-51792243 | Msa0736000:CDS |
| ACATATCAACTACTTTCTCT+AGG | 0.550836 | 5_1:-51791763 | Msa0736000:three_prime_UTR |
| ATAGCTTTCTTCCCTGACAA+TGG | 0.550979 | 5_1:+51792607 | None:intergenic |
| TGGAGCACAAGTCAATGTCC+TGG | 0.557653 | 5_1:+51793666 | None:intergenic |
| TAACATAGGCGATACGGTAG+GGG | 0.562252 | 5_1:+51794405 | None:intergenic |
| AAAGTGAACTTAGTATGCTA+AGG | 0.562963 | 5_1:+51793155 | None:intergenic |
| TCTTCAGCCATATGTCATGA+TGG | 0.567416 | 5_1:+51794546 | None:intergenic |
| AAAAGAGTTCTTGTATTCTG+TGG | 0.570824 | 5_1:+51794715 | None:intergenic |
| TCAAGAAACGGCGTTTAGGA+GGG | 0.570826 | 5_1:-51791802 | Msa0736000:three_prime_UTR |
| ATGTGGCTATGACTAGGGCT+AGG | 0.571180 | 5_1:-51792081 | Msa0736000:CDS |
| CTTTCATCCAAATACTGGAT+GGG | 0.573095 | 5_1:-51793458 | Msa0736000:CDS |
| ATCGACTATCTGGTTCAGAC+AGG | 0.573307 | 5_1:+51793878 | None:intergenic |
| GGTAAAGAGCAATTTGGTCA+TGG | 0.575475 | 5_1:-51792524 | Msa0736000:CDS |
| ACAAGGAAGAAAGTTAGCAT+AGG | 0.580771 | 5_1:-51792307 | Msa0736000:CDS |
| CCATCATAGAACTCTTCGCA+CGG | 0.582805 | 5_1:+51792647 | None:intergenic |
| ACCAGTACCATTAGATCTCA+CGG | 0.585010 | 5_1:+51792138 | None:intergenic |
| AACCAGTAATGAAAGTGAAG+AGG | 0.586546 | 5_1:-51795425 | Msa0736000:CDS |
| GAGCTTAAACAAAAGTACAT+TGG | 0.591654 | 5_1:+51791675 | None:intergenic |
| ATCTGATGCTCCCATTGTCA+GGG | 0.594382 | 5_1:-51792618 | Msa0736000:CDS |
| CACGGGAATAAGCTAATGGA+AGG | 0.595715 | 5_1:+51792665 | None:intergenic |
| CAGAACATTCTTAATAGCCC+GGG | 0.595796 | 5_1:+51791862 | None:intergenic |
| TTTAATTATATTCATGTGTG+AGG | 0.595989 | 5_1:+51794094 | None:intergenic |
| ACAAAAGTACATTGGCACCA+TGG | 0.596189 | 5_1:+51791683 | None:intergenic |
| CATCATAGAACTCTTCGCAC+GGG | 0.599208 | 5_1:+51792648 | None:intergenic |
| ACATTGACAAGGCCTGGATG+AGG | 0.599408 | 5_1:+51793517 | None:intergenic |
| TATGGGGACCACCAGGGACA+GGG | 0.599903 | 5_1:-51793738 | Msa0736000:CDS |
| ATGAAATTAAGTCCTCATCC+AGG | 0.605229 | 5_1:-51793529 | Msa0736000:CDS |
| TTGAATGTTTGGATGAGCGA+TGG | 0.605364 | 5_1:-51791717 | Msa0736000:three_prime_UTR |
| TGAATATTGAAGATGACTTG+TGG | 0.605497 | 5_1:-51794199 | Msa0736000:CDS |
| CATCTCCGATTAGGATGCAA+CGG | 0.610928 | 5_1:+51792900 | None:intergenic |
| GAAACTAATTGATCCAGCAA+AGG | 0.611704 | 5_1:-51793011 | Msa0736000:CDS |
| TGTGTTTCCTCAAACAATAG+AGG | 0.616517 | 5_1:+51794689 | None:intergenic |
| TGCCAGTGTTCATGAAGACA+AGG | 0.619804 | 5_1:-51792324 | Msa0736000:intron |
| GGAAATTGAGCAGTACACTC+GGG | 0.620554 | 5_1:-51792242 | Msa0736000:CDS |
| TGAAGAGGATGTTCGACTCG+AGG | 0.621652 | 5_1:-51795386 | Msa0736000:CDS |
| TTAAGAAGGTAATCAAGGCA+AGG | 0.623298 | 5_1:-51794385 | Msa0736000:CDS |
| TTTGTTCAGAACATCCTCGA+GGG | 0.625922 | 5_1:+51795345 | None:intergenic |
| AAATTTAACATTGACATGAG+AGG | 0.626648 | 5_1:-51793112 | Msa0736000:CDS |
| TGTTAGCAATGCAAGTGAAG+AGG | 0.630903 | 5_1:-51795401 | Msa0736000:CDS |
| CTTAACATAGGCGATACGGT+AGG | 0.632234 | 5_1:+51794403 | None:intergenic |
| TACTTCGTCCAAATTCACAT+TGG | 0.633182 | 5_1:+51792753 | None:intergenic |
| TGGACAAAGTCTGAAGAACA+TGG | 0.636091 | 5_1:-51792504 | Msa0736000:CDS |
| AAATAGACAAAGAACAAATG+TGG | 0.638430 | 5_1:-51792098 | Msa0736000:CDS |
| TTGTAATGTTGGGATACGAA+AGG | 0.638800 | 5_1:-51792718 | Msa0736000:CDS |
| AACTTATATGGGGACCACCA+GGG | 0.643082 | 5_1:-51793744 | Msa0736000:CDS |
| AACTACTTTCTCTAGGCGAG+TGG | 0.643303 | 5_1:-51791756 | Msa0736000:three_prime_UTR |
| GCTGATATCAAACTTATATG+GGG | 0.644417 | 5_1:-51793754 | Msa0736000:CDS |
| CGATGGGTTTCTCTAAACCA+TGG | 0.646701 | 5_1:-51791700 | Msa0736000:three_prime_UTR |
| AGATGACTTGCAGAACAACA+AGG | 0.652641 | 5_1:-51794303 | Msa0736000:CDS |
| GCAATGAGATCTCCTGACAC+AGG | 0.658736 | 5_1:+51794479 | None:intergenic |
| GGTCTCTTGGAAATTCCTTG+GGG | 0.661476 | 5_1:-51793222 | Msa0736000:CDS |
| AGTATTCTTACAATTGGACG+CGG | 0.662302 | 5_1:+51794059 | None:intergenic |
| TCAAGTTTATGAAATTCAGG+AGG | 0.663310 | 5_1:-51792263 | Msa0736000:CDS |
| ATTGAATGAGATTCTCTACA+CGG | 0.664980 | 5_1:+51793482 | None:intergenic |
| CTCCGATTAGGATGCAACGG+TGG | 0.685534 | 5_1:+51792903 | None:intergenic |
| TGTACTCTCATGGACCCTCG+AGG | 0.722293 | 5_1:-51795359 | Msa0736000:CDS |
| TATCGAGAAAGACATTGACA+AGG | 0.728740 | 5_1:+51793506 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAGATTGAGTATTTTTA+TGG | - | chr5_1:51791861-51791880 | Msa0736000:three_prime_UTR | 15.0% |
| !! | GTTAATTTATATGATGTTTA+TGG | - | chr5_1:51792011-51792030 | Msa0736000:intron | 15.0% |
| !! | TAAAAGATGATGTAATTAAT+TGG | + | chr5_1:51792053-51792072 | None:intergenic | 15.0% |
| !!! | TTTTACAAACTAAAACAAAA+TGG | + | chr5_1:51792130-51792149 | None:intergenic | 15.0% |
| !!! | TTTTAGTTTGTAAAATAGTA+TGG | - | chr5_1:51792135-51792154 | Msa0736000:CDS | 15.0% |
| !! | AATATAATTAAAACAGTGTT+GGG | - | chr5_1:51793008-51793027 | Msa0736000:CDS | 15.0% |
| !!! | AAAGTTATTTTTCTTGAATT+TGG | + | chr5_1:51793899-51793918 | None:intergenic | 15.0% |
| !! | ATAATTAAAAGTCTTTATGA+AGG | - | chr5_1:51794633-51794652 | Msa0736000:CDS | 15.0% |
| !! | AACATTCAAACATATTAATT+TGG | + | chr5_1:51795363-51795382 | None:intergenic | 15.0% |
| !! | AATTAATATGTTTGAATGTT+TGG | - | chr5_1:51795363-51795382 | Msa0736000:CDS | 15.0% |
| !! | TTTAATTATATTCATGTGTG+AGG | + | chr5_1:51793000-51793019 | None:intergenic | 20.0% |
| !! | GAATATAATTAAAACAGTGT+TGG | - | chr5_1:51793007-51793026 | Msa0736000:CDS | 20.0% |
| !! | GTATGCTATATATTAAATGA+AGG | + | chr5_1:51793080-51793099 | None:intergenic | 20.0% |
| !!! | AATACAAAAAAGCATTAAAC+AGG | + | chr5_1:51793166-51793185 | None:intergenic | 20.0% |
| !! | TTTGAATACAAGAAGATATT+TGG | - | chr5_1:51793733-51793752 | Msa0736000:CDS | 20.0% |
| !! | AGCTATGTTAATAAAAGAAT+AGG | + | chr5_1:51794544-51794563 | None:intergenic | 20.0% |
| !!! | TTCTTTTATTAACATAGCTA+AGG | - | chr5_1:51794545-51794564 | Msa0736000:CDS | 20.0% |
| !!! | TCTTTTATTAACATAGCTAA+GGG | - | chr5_1:51794546-51794565 | Msa0736000:CDS | 20.0% |
| ! | CAAAAATCTTTACAAAGACA+AGG | - | chr5_1:51791765-51791784 | Msa0736000:three_prime_UTR | 25.0% |
| ! | CATTGTAAAGAATCTAAAGA+TGG | + | chr5_1:51791798-51791817 | None:intergenic | 25.0% |
| ! | ACATTATTGATCTCACAAAA+AGG | + | chr5_1:51792468-51792487 | None:intergenic | 25.0% |
| ! | ATAATGTTCAAAAAACTGCA+TGG | - | chr5_1:51792481-51792500 | Msa0736000:CDS | 25.0% |
| !!! | ATGAATTGGTTTTGATCTTT+TGG | + | chr5_1:51792519-51792538 | None:intergenic | 25.0% |
| ! | TCTGATGAAGTTGAAAATAT+TGG | - | chr5_1:51792579-51792598 | Msa0736000:CDS | 25.0% |
| ! | AATATTCATCTTCATGCATT+CGG | + | chr5_1:51792880-51792899 | None:intergenic | 25.0% |
| !!! | CAAAAGAGTATTCTTACAAT+TGG | + | chr5_1:51793041-51793060 | None:intergenic | 25.0% |
| !! | AATACTCTTTTGATCTGAAT+AGG | - | chr5_1:51793049-51793068 | Msa0736000:CDS | 25.0% |
| !! | TTCAAACGTAATTTTTCATG+CGG | + | chr5_1:51793108-51793127 | None:intergenic | 25.0% |
| !! | TATCATGTCTTCTTTTATGA+AGG | + | chr5_1:51793242-51793261 | None:intergenic | 25.0% |
| ! | ATGCTGATATCAAACTTATA+TGG | - | chr5_1:51793335-51793354 | Msa0736000:CDS | 25.0% |
| ! | TGCTGATATCAAACTTATAT+GGG | - | chr5_1:51793336-51793355 | Msa0736000:CDS | 25.0% |
| ! | TTTGTTAGCAAATTTCTTCA+TGG | + | chr5_1:51793695-51793714 | None:intergenic | 25.0% |
| ! | GTCAATGTTAAATTTAGGAA+GGG | + | chr5_1:51793974-51793993 | None:intergenic | 25.0% |
| ! | TGTCAATGTTAAATTTAGGA+AGG | + | chr5_1:51793975-51793994 | None:intergenic | 25.0% |
| ! | CTCATGTCAATGTTAAATTT+AGG | + | chr5_1:51793979-51793998 | None:intergenic | 25.0% |
| ! | AAATTTAACATTGACATGAG+AGG | - | chr5_1:51793979-51793998 | Msa0736000:intron | 25.0% |
| ! | TTTGAAAGACTTGTAATGTT+GGG | - | chr5_1:51794363-51794382 | Msa0736000:CDS | 25.0% |
| !! | TATAATAAGCTTTTCCTTGA+AGG | - | chr5_1:51794504-51794523 | Msa0736000:CDS | 25.0% |
| ! | AACCATTATGTTGTATTTCA+TGG | - | chr5_1:51794676-51794695 | Msa0736000:CDS | 25.0% |
| ! | TTCCATGAAATACAACATAA+TGG | + | chr5_1:51794681-51794700 | None:intergenic | 25.0% |
| ! | TCATAAACTTGAGCATTATA+TGG | + | chr5_1:51794820-51794839 | None:intergenic | 25.0% |
| ! | AAATAGACAAAGAACAAATG+TGG | - | chr5_1:51794993-51795012 | Msa0736000:intron | 25.0% |
| ! | TAGTTATTGATGCTAAGAAT+AGG | - | chr5_1:51795169-51795188 | Msa0736000:intron | 25.0% |
| ! | AGTTATTGATGCTAAGAATA+GGG | - | chr5_1:51795170-51795189 | Msa0736000:intron | 25.0% |
| AATCTTTATTGAGACTGGTA+TGG | + | chr5_1:51791850-51791869 | None:intergenic | 30.0% | |
| TACTCAATCTTTATTGAGAC+TGG | + | chr5_1:51791855-51791874 | None:intergenic | 30.0% | |
| AAGTGCATTGCATTGTTAAA+AGG | + | chr5_1:51792171-51792190 | None:intergenic | 30.0% | |
| AAAAGAGTTCTTGTATTCTG+TGG | + | chr5_1:51792379-51792398 | None:intergenic | 30.0% | |
| ! | TTTTGTACCTCTATTGTTTG+AGG | - | chr5_1:51792395-51792414 | Msa0736000:intron | 30.0% |
| TTCAAGTCATTTAAGCTTTC+AGG | + | chr5_1:51792654-51792673 | None:intergenic | 30.0% | |
| CTTGATTACCTTCTTAACAT+AGG | + | chr5_1:51792703-51792722 | None:intergenic | 30.0% | |
| CTATGTTAAGAAGGTAATCA+AGG | - | chr5_1:51792701-51792720 | Msa0736000:CDS | 30.0% | |
| AATATCCATCTTCATGCAAT+TGG | + | chr5_1:51792823-51792842 | None:intergenic | 30.0% | |
| TGAATATTGAAGATGACTTG+TGG | - | chr5_1:51792892-51792911 | Msa0736000:CDS | 30.0% | |
| !! | CATTTGTTGTCATGTTCATA+AGG | + | chr5_1:51792950-51792969 | None:intergenic | 30.0% |
| ! | TCAAACGTAATTTTTCATGC+GGG | + | chr5_1:51793107-51793126 | None:intergenic | 30.0% |
| !!! | TGCTTTTTTGTATTTCAGAG+TGG | - | chr5_1:51793172-51793191 | Msa0736000:CDS | 30.0% |
| GCTGATATCAAACTTATATG+GGG | - | chr5_1:51793337-51793356 | Msa0736000:CDS | 30.0% | |
| TGCAAAATTGCAGTATTAGT+TGG | + | chr5_1:51793448-51793467 | None:intergenic | 30.0% | |
| ! | AACTAATACTGCAATTTTGC+AGG | - | chr5_1:51793447-51793466 | Msa0736000:CDS | 30.0% |
| TCACTTGATCATGATACATA+TGG | - | chr5_1:51793502-51793521 | Msa0736000:CDS | 30.0% | |
| GATCATGATACATATGGTTT+AGG | - | chr5_1:51793508-51793527 | Msa0736000:CDS | 30.0% | |
| ATTGAATGAGATTCTCTACA+CGG | + | chr5_1:51793612-51793631 | None:intergenic | 30.0% | |
| ATGTCTCATTTCATTGGAAA+TGG | - | chr5_1:51793813-51793832 | Msa0736000:CDS | 30.0% | |
| AAAGTGAACTTAGTATGCTA+AGG | + | chr5_1:51793939-51793958 | None:intergenic | 30.0% | |
| TCGATTACTAAAAATTGCAC+TGG | + | chr5_1:51794111-51794130 | None:intergenic | 30.0% | |
| ! | TTAGTAAAAAGCAAGGTACT+CGG | - | chr5_1:51794231-51794250 | Msa0736000:CDS | 30.0% |
| GTTTGAAAGACTTGTAATGT+TGG | - | chr5_1:51794362-51794381 | Msa0736000:CDS | 30.0% | |
| TGCTCAAGTTTATGAAATTC+AGG | - | chr5_1:51794825-51794844 | Msa0736000:intron | 30.0% | |
| TCAAGTTTATGAAATTCAGG+AGG | - | chr5_1:51794828-51794847 | Msa0736000:intron | 30.0% | |
| AGATACTGTCTTTGGATATT+AGG | - | chr5_1:51795102-51795121 | Msa0736000:intron | 30.0% | |
| ACATATCAACTACTTTCTCT+AGG | - | chr5_1:51795328-51795347 | Msa0736000:CDS | 30.0% | |
| ! | GAGCTTAAACAAAAGTACAT+TGG | + | chr5_1:51795419-51795438 | None:intergenic | 30.0% |
| AACCAGTAATGAAAGTGAAG+AGG | - | chr5_1:51791666-51791685 | Msa0736000:three_prime_UTR | 35.0% | |
| ATCCTCTTCACTTTCATTAC+TGG | + | chr5_1:51791671-51791690 | None:intergenic | 35.0% | |
| ! | TACAATGTGCACTTGTTTCT+TGG | - | chr5_1:51791811-51791830 | Msa0736000:three_prime_UTR | 35.0% |
| TGTGTTTCCTCAAACAATAG+AGG | + | chr5_1:51792405-51792424 | None:intergenic | 35.0% | |
| ! | CATGATGGAACTGTATGAAT+TGG | + | chr5_1:51792533-51792552 | None:intergenic | 35.0% |
| TACAGTTCCATCATGACATA+TGG | - | chr5_1:51792538-51792557 | Msa0736000:CDS | 35.0% | |
| GGAAATTATAAACCTGTGTC+AGG | - | chr5_1:51792600-51792619 | Msa0736000:CDS | 35.0% | |
| TCATTGCTTTCACACACATT+AGG | - | chr5_1:51792628-51792647 | Msa0736000:CDS | 35.0% | |
| TTAAGAAGGTAATCAAGGCA+AGG | - | chr5_1:51792706-51792725 | Msa0736000:CDS | 35.0% | |
| !! | GACAGTACTGAGATTTTATC+AGG | + | chr5_1:51792741-51792760 | None:intergenic | 35.0% |
| ATCATCCAATTGCATGAAGA+TGG | - | chr5_1:51792815-51792834 | Msa0736000:intron | 35.0% | |
| AGTATTCTTACAATTGGACG+CGG | + | chr5_1:51793035-51793054 | None:intergenic | 35.0% | |
| CTCTACTCAAGTTAAAAACC+AGG | - | chr5_1:51793407-51793426 | Msa0736000:CDS | 35.0% | |
| ! | TAATACTGCAATTTTGCAGG+TGG | - | chr5_1:51793450-51793469 | Msa0736000:CDS | 35.0% |
| ! | TTAGGTGACATTGTGCTATT+TGG | - | chr5_1:51793526-51793545 | Msa0736000:CDS | 35.0% |
| !! | GACATTGTGCTATTTGGAAA+TGG | - | chr5_1:51793532-51793551 | Msa0736000:CDS | 35.0% |
| ! | TGCTATTTGGAAATGGTAAG+AGG | - | chr5_1:51793539-51793558 | Msa0736000:CDS | 35.0% |
| ATGAAATTAAGTCCTCATCC+AGG | - | chr5_1:51793562-51793581 | Msa0736000:CDS | 35.0% | |
| TATCGAGAAAGACATTGACA+AGG | + | chr5_1:51793588-51793607 | None:intergenic | 35.0% | |
| CAATGCTTTCATCCAAATAC+TGG | - | chr5_1:51793628-51793647 | Msa0736000:CDS | 35.0% | |
| CTTTCATCCAAATACTGGAT+GGG | - | chr5_1:51793633-51793652 | Msa0736000:CDS | 35.0% | |
| TCCAATGAAATGAGACATGT+TGG | + | chr5_1:51793811-51793830 | None:intergenic | 35.0% | |
| !! | TTCAAGCTCTTGATTTGCTA+AGG | - | chr5_1:51793848-51793867 | Msa0736000:CDS | 35.0% |
| GAAACTAATTGATCCAGCAA+AGG | - | chr5_1:51794080-51794099 | Msa0736000:CDS | 35.0% | |
| AACAATTCCATTACAGCTGT+CGG | - | chr5_1:51794161-51794180 | Msa0736000:CDS | 35.0% | |
| TCCTGCATTAGTAAAAAGCA+AGG | - | chr5_1:51794224-51794243 | Msa0736000:CDS | 35.0% | |
| !!! | ACCTTGCTTTTTACTAATGC+AGG | + | chr5_1:51794228-51794247 | None:intergenic | 35.0% |
| ! | TAGTAAAAAGCAAGGTACTC+GGG | - | chr5_1:51794232-51794251 | Msa0736000:CDS | 35.0% |
| ATAGCAGACCAATGTGAATT+TGG | - | chr5_1:51794330-51794349 | Msa0736000:CDS | 35.0% | |
| TACTTCGTCCAAATTCACAT+TGG | + | chr5_1:51794341-51794360 | None:intergenic | 35.0% | |
| TTGTAATGTTGGGATACGAA+AGG | - | chr5_1:51794373-51794392 | Msa0736000:CDS | 35.0% | |
| ! | AAGAGTACATTTCTCCTTCA+AGG | + | chr5_1:51794521-51794540 | None:intergenic | 35.0% |
| ACAAGGAAGAAAGTTAGCAT+AGG | - | chr5_1:51794784-51794803 | Msa0736000:intron | 35.0% | |
| GTAAATGTTCGTTCTGTTGA+TGG | - | chr5_1:51794892-51794911 | Msa0736000:intron | 35.0% | |
| ATATCTACCGTGAGATCTAA+TGG | - | chr5_1:51794946-51794965 | Msa0736000:intron | 35.0% | |
| AACAAATGTGGCTATGACTA+GGG | - | chr5_1:51795005-51795024 | Msa0736000:intron | 35.0% | |
| ! | TTTTGTGCAGATACTGTCTT+TGG | - | chr5_1:51795094-51795113 | Msa0736000:intron | 35.0% |
| TAATCAACAGTGACTCTGTT+TGG | - | chr5_1:51795139-51795158 | Msa0736000:intron | 35.0% | |
| TGCTGAAGAGGACAAAAAAT+TGG | - | chr5_1:51795206-51795225 | Msa0736000:intron | 35.0% | |
| ACAGAACATTCTTAATAGCC+CGG | + | chr5_1:51795233-51795252 | None:intergenic | 35.0% | |
| ATTCTTTCAGTCGTTGAATC+TGG | + | chr5_1:51795257-51795276 | None:intergenic | 35.0% | |
| TTGAGTCACCATTCAAGAAA+CGG | - | chr5_1:51795277-51795296 | Msa0736000:intron | 35.0% | |
| TGTTAGCAATGCAAGTGAAG+AGG | - | chr5_1:51791690-51791709 | Msa0736000:three_prime_UTR | 40.0% | |
| TTTGTTCAGAACATCCTCGA+GGG | + | chr5_1:51791749-51791768 | None:intergenic | 40.0% | |
| ! | TTTTGTTCAGAACATCCTCG+AGG | + | chr5_1:51791750-51791769 | None:intergenic | 40.0% |
| CATATGCGAGACTACATAGA+AGG | + | chr5_1:51791915-51791934 | None:intergenic | 40.0% | |
| GAAAAAACCTATGTTCTCGC+AGG | - | chr5_1:51792323-51792342 | Msa0736000:intron | 40.0% | |
| TTATGAACCTGCGAGAACAT+AGG | + | chr5_1:51792333-51792352 | None:intergenic | 40.0% | |
| TCTTCAGCCATATGTCATGA+TGG | + | chr5_1:51792548-51792567 | None:intergenic | 40.0% | |
| TTAACATAGGCGATACGGTA+GGG | + | chr5_1:51792690-51792709 | None:intergenic | 40.0% | |
| CCTTCTTAACATAGGCGATA+CGG | + | chr5_1:51792695-51792714 | None:intergenic | 40.0% | |
| AAGGTAATCAAGGCAAGGAA+TGG | - | chr5_1:51792711-51792730 | Msa0736000:CDS | 40.0% | |
| GTCATGCAAATGCATGAAGA+TGG | - | chr5_1:51792758-51792777 | Msa0736000:CDS | 40.0% | |
| ! | AGATGACTTGCAGAACAACA+AGG | - | chr5_1:51792788-51792807 | Msa0736000:intron | 40.0% |
| ! | CATGTGTGAGGTTGATTTCA+GGG | + | chr5_1:51792988-51793007 | None:intergenic | 40.0% |
| ! | TCATGTGTGAGGTTGATTTC+AGG | + | chr5_1:51792989-51793008 | None:intergenic | 40.0% |
| ATGAAGGTAGATCGACTATC+TGG | + | chr5_1:51793226-51793245 | None:intergenic | 40.0% | |
| GCTTGAAACAGCATCTTCTT+GGG | + | chr5_1:51793290-51793309 | None:intergenic | 40.0% | |
| AGCTTGAAACAGCATCTTCT+TGG | + | chr5_1:51793291-51793310 | None:intergenic | 40.0% | |
| ! | CAATTTTGCAGGTGGCAATT+CGG | - | chr5_1:51793458-51793477 | Msa0736000:CDS | 40.0% |
| ! | TCGGTTGCATAGGTTAGTTA+TGG | - | chr5_1:51793477-51793496 | Msa0736000:CDS | 40.0% |
| GCTTTCATCCAAATACTGGA+TGG | - | chr5_1:51793632-51793651 | Msa0736000:CDS | 40.0% | |
| TTAGTCTCCCATCCAGTATT+TGG | + | chr5_1:51793643-51793662 | None:intergenic | 40.0% | |
| GCCAACATGTCTCATTTCAT+TGG | - | chr5_1:51793807-51793826 | Msa0736000:CDS | 40.0% | |
| !! | CTTGATTTGCTAAGGTCTCT+TGG | - | chr5_1:51793856-51793875 | Msa0736000:CDS | 40.0% |
| AAGGTCTCTTGGAAATTCCT+TGG | - | chr5_1:51793867-51793886 | Msa0736000:CDS | 40.0% | |
| AGGTCTCTTGGAAATTCCTT+GGG | - | chr5_1:51793868-51793887 | Msa0736000:CDS | 40.0% | |
| ACAATTCCATTACAGCTGTC+GGG | - | chr5_1:51794162-51794181 | Msa0736000:CDS | 40.0% | |
| TAGCTTTCTTCCCTGACAAT+GGG | + | chr5_1:51794486-51794505 | None:intergenic | 40.0% | |
| ATAGCTTTCTTCCCTGACAA+TGG | + | chr5_1:51794487-51794506 | None:intergenic | 40.0% | |
| GCTAAGGGTAAAGAGCAATT+TGG | - | chr5_1:51794561-51794580 | Msa0736000:CDS | 40.0% | |
| GGTAAAGAGCAATTTGGTCA+TGG | - | chr5_1:51794567-51794586 | Msa0736000:CDS | 40.0% | |
| TGGACAAAGTCTGAAGAACA+TGG | - | chr5_1:51794587-51794606 | Msa0736000:CDS | 40.0% | |
| AAGTCTGAAGAACATGGTTC+AGG | - | chr5_1:51794593-51794612 | Msa0736000:CDS | 40.0% | |
| ATACGAACGCTGAAGATTTC+TGG | + | chr5_1:51794704-51794723 | None:intergenic | 40.0% | |
| TTCCTTGTCTTCATGAACAC+TGG | + | chr5_1:51794772-51794791 | None:intergenic | 40.0% | |
| AGGAAATTGAGCAGTACACT+CGG | - | chr5_1:51794848-51794867 | Msa0736000:intron | 40.0% | |
| !!! | CGTTCTGTTGATGGTTTTCA+AGG | - | chr5_1:51794901-51794920 | Msa0736000:intron | 40.0% |
| !!! | TCTGTTGATGGTTTTCAAGG+TGG | - | chr5_1:51794904-51794923 | Msa0736000:intron | 40.0% |
| ACCAGTACCATTAGATCTCA+CGG | + | chr5_1:51794956-51794975 | None:intergenic | 40.0% | |
| !! | TCTAATGGTACTGGTGATGT+TGG | - | chr5_1:51794961-51794980 | Msa0736000:intron | 40.0% |
| GAACAAATGTGGCTATGACT+AGG | - | chr5_1:51795004-51795023 | Msa0736000:intron | 40.0% | |
| TTGTTTCCACAATGCTGAAG+AGG | - | chr5_1:51795194-51795213 | Msa0736000:intron | 40.0% | |
| ! | TTTTGTCCTCTTCAGCATTG+TGG | + | chr5_1:51795203-51795222 | None:intergenic | 40.0% |
| AAGAGGACAAAAAATTGGCC+CGG | - | chr5_1:51795211-51795230 | Msa0736000:intron | 40.0% | |
| CAGAACATTCTTAATAGCCC+GGG | + | chr5_1:51795232-51795251 | None:intergenic | 40.0% | |
| TTGAATGTTTGGATGAGCGA+TGG | - | chr5_1:51795374-51795393 | Msa0736000:CDS | 40.0% | |
| TGAATGTTTGGATGAGCGAT+GGG | - | chr5_1:51795375-51795394 | Msa0736000:CDS | 40.0% | |
| ! | ACAAAAGTACATTGGCACCA+TGG | + | chr5_1:51795411-51795430 | None:intergenic | 40.0% |
| TCGAGGATGTTGTACTCTCA+TGG | - | chr5_1:51791722-51791741 | Msa0736000:three_prime_UTR | 45.0% | |
| TAACATAGGCGATACGGTAG+GGG | + | chr5_1:51792689-51792708 | None:intergenic | 45.0% | |
| CTTAACATAGGCGATACGGT+AGG | + | chr5_1:51792691-51792710 | None:intergenic | 45.0% | |
| CCGTATCGCCTATGTTAAGA+AGG | - | chr5_1:51792692-51792711 | Msa0736000:CDS | 45.0% | |
| ! | ATCGACTATCTGGTTCAGAC+AGG | + | chr5_1:51793216-51793235 | None:intergenic | 45.0% |
| AAACTTATATGGGGACCACC+AGG | - | chr5_1:51793346-51793365 | Msa0736000:CDS | 45.0% | |
| AACTTATATGGGGACCACCA+GGG | - | chr5_1:51793347-51793366 | Msa0736000:CDS | 45.0% | |
| AGAAAGACATTGACAAGGCC+TGG | + | chr5_1:51793583-51793602 | None:intergenic | 45.0% | |
| GGAGTTCAGCAACTCTATCA+TGG | + | chr5_1:51793674-51793693 | None:intergenic | 45.0% | |
| TGTTGGCATGTGTGTGTGTA+AGG | + | chr5_1:51793794-51793813 | None:intergenic | 45.0% | |
| GGTCTCTTGGAAATTCCTTG+GGG | - | chr5_1:51793869-51793888 | Msa0736000:CDS | 45.0% | |
| CATCTCCGATTAGGATGCAA+CGG | + | chr5_1:51794194-51794213 | None:intergenic | 45.0% | |
| GTTGTCTCTCATCTCCGATT+AGG | + | chr5_1:51794203-51794222 | None:intergenic | 45.0% | |
| CACGGGAATAAGCTAATGGA+AGG | + | chr5_1:51794429-51794448 | None:intergenic | 45.0% | |
| TTCGCACGGGAATAAGCTAA+TGG | + | chr5_1:51794433-51794452 | None:intergenic | 45.0% | |
| CATCATAGAACTCTTCGCAC+GGG | + | chr5_1:51794446-51794465 | None:intergenic | 45.0% | |
| CCATCATAGAACTCTTCGCA+CGG | + | chr5_1:51794447-51794466 | None:intergenic | 45.0% | |
| TATCTGATGCTCCCATTGTC+AGG | - | chr5_1:51794472-51794491 | Msa0736000:CDS | 45.0% | |
| ATCTGATGCTCCCATTGTCA+GGG | - | chr5_1:51794473-51794492 | Msa0736000:CDS | 45.0% | |
| TGCCAGTGTTCATGAAGACA+AGG | - | chr5_1:51794767-51794786 | Msa0736000:intron | 45.0% | |
| GGAAATTGAGCAGTACACTC+GGG | - | chr5_1:51794849-51794868 | Msa0736000:intron | 45.0% | |
| !! | TGATGGTTTTCAAGGTGGTG+AGG | - | chr5_1:51794909-51794928 | Msa0736000:intron | 45.0% |
| ACCGTGAGATCTAATGGTAC+TGG | - | chr5_1:51794952-51794971 | Msa0736000:intron | 45.0% | |
| AGAGGACAAAAAATTGGCCC+GGG | - | chr5_1:51795212-51795231 | Msa0736000:intron | 45.0% | |
| CCTAAACGCCGTTTCTTGAA+TGG | + | chr5_1:51795288-51795307 | None:intergenic | 45.0% | |
| CCATTCAAGAAACGGCGTTT+AGG | - | chr5_1:51795285-51795304 | Msa0736000:intron | 45.0% | |
| TTCAAGAAACGGCGTTTAGG+AGG | - | chr5_1:51795288-51795307 | Msa0736000:intron | 45.0% | |
| TCAAGAAACGGCGTTTAGGA+GGG | - | chr5_1:51795289-51795308 | Msa0736000:intron | 45.0% | |
| AACTACTTTCTCTAGGCGAG+TGG | - | chr5_1:51795335-51795354 | Msa0736000:CDS | 45.0% | |
| ! | CGATGGGTTTCTCTAAACCA+TGG | - | chr5_1:51795391-51795410 | Msa0736000:CDS | 45.0% |
| ! | TGAAGAGGATGTTCGACTCG+AGG | - | chr5_1:51791705-51791724 | Msa0736000:three_prime_UTR | 50.0% |
| ! | GTGGCTGACTTAAACGTCTC+TGG | + | chr5_1:51792360-51792379 | None:intergenic | 50.0% |
| GCAATGAGATCTCCTGACAC+AGG | + | chr5_1:51792615-51792634 | None:intergenic | 50.0% | |
| !! | TTTGTTTTCCCTGTCCCTGG+TGG | + | chr5_1:51793364-51793383 | None:intergenic | 50.0% |
| !!! | GTCTTTGTTTTCCCTGTCCC+TGG | + | chr5_1:51793367-51793386 | None:intergenic | 50.0% |
| TGGAGCACAAGTCAATGTCC+TGG | + | chr5_1:51793428-51793447 | None:intergenic | 50.0% | |
| AGGTGGCAATTCGGTTGCAT+AGG | - | chr5_1:51793467-51793486 | Msa0736000:CDS | 50.0% | |
| ACATTGACAAGGCCTGGATG+AGG | + | chr5_1:51793577-51793596 | None:intergenic | 50.0% | |
| !! | CTTGAATTTGGCTTGCCCCA+AGG | + | chr5_1:51793887-51793906 | None:intergenic | 50.0% |
| CTCCACCGTTGCATCCTAAT+CGG | - | chr5_1:51794186-51794205 | Msa0736000:CDS | 50.0% | |
| CCGTGCGAAGAGTTCTATGA+TGG | - | chr5_1:51794444-51794463 | Msa0736000:CDS | 50.0% | |
| ATGTGGCTATGACTAGGGCT+AGG | - | chr5_1:51795010-51795029 | Msa0736000:intron | 50.0% | |
| ACGGCGTTTAGGAGGGAAAA+TGG | - | chr5_1:51795296-51795315 | Msa0736000:intron | 50.0% | |
| CGGCGTTTAGGAGGGAAAAT+GGG | - | chr5_1:51795297-51795316 | Msa0736000:intron | 50.0% | |
| TGTACTCTCATGGACCCTCG+AGG | - | chr5_1:51791732-51791751 | Msa0736000:three_prime_UTR | 55.0% | |
| ! | AGGCGATACGGTAGGGGTTT+TGG | + | chr5_1:51792683-51792702 | None:intergenic | 55.0% |
| !! | TGCACTGGCTTCACCTTTGC+TGG | + | chr5_1:51794096-51794115 | None:intergenic | 55.0% |
| TGGAGACCCGACAGCTGTAA+TGG | + | chr5_1:51794171-51794190 | None:intergenic | 55.0% | |
| CTCCGATTAGGATGCAACGG+TGG | + | chr5_1:51794191-51794210 | None:intergenic | 55.0% | |
| ATATGGGGACCACCAGGGAC+AGG | - | chr5_1:51793352-51793371 | Msa0736000:CDS | 60.0% | |
| TATGGGGACCACCAGGGACA+GGG | - | chr5_1:51793353-51793372 | Msa0736000:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 51791658 | 51795455 | 51791658 | ID=Msa0736000;Name=Msa0736000 |
| chr5_1 | mRNA | 51791658 | 51795455 | 51791658 | ID=Msa0736000-mRNA-1;Parent=Msa0736000;Name=Msa0736000-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.6|0.33|1|0.8|0.66|6|304|840 |
| chr5_1 | exon | 51791658 | 51792009 | 51791658 | ID=Msa0736000-mRNA-1:exon:14654;Parent=Msa0736000-mRNA-1 |
| chr5_1 | exon | 51792075 | 51792340 | 51792075 | ID=Msa0736000-mRNA-1:exon:14653;Parent=Msa0736000-mRNA-1 |
| chr5_1 | exon | 51792459 | 51792783 | 51792459 | ID=Msa0736000-mRNA-1:exon:14652;Parent=Msa0736000-mRNA-1 |
| chr5_1 | exon | 51792868 | 51793923 | 51792868 | ID=Msa0736000-mRNA-1:exon:14651;Parent=Msa0736000-mRNA-1 |
| chr5_1 | exon | 51794070 | 51794768 | 51794070 | ID=Msa0736000-mRNA-1:exon:14650;Parent=Msa0736000-mRNA-1 |
| chr5_1 | exon | 51795327 | 51795455 | 51795327 | ID=Msa0736000-mRNA-1:exon:14649;Parent=Msa0736000-mRNA-1 |
| chr5_1 | CDS | 51795327 | 51795455 | 51795327 | ID=Msa0736000-mRNA-1:cds;Parent=Msa0736000-mRNA-1 |
| chr5_1 | CDS | 51794070 | 51794768 | 51794070 | ID=Msa0736000-mRNA-1:cds;Parent=Msa0736000-mRNA-1 |
| chr5_1 | CDS | 51792868 | 51793923 | 51792868 | ID=Msa0736000-mRNA-1:cds;Parent=Msa0736000-mRNA-1 |
| chr5_1 | CDS | 51792459 | 51792783 | 51792459 | ID=Msa0736000-mRNA-1:cds;Parent=Msa0736000-mRNA-1 |
| chr5_1 | CDS | 51792075 | 51792340 | 51792075 | ID=Msa0736000-mRNA-1:cds;Parent=Msa0736000-mRNA-1 |
| chr5_1 | CDS | 51791962 | 51792009 | 51791962 | ID=Msa0736000-mRNA-1:cds;Parent=Msa0736000-mRNA-1 |
| chr5_1 | three_prime_UTR | 51791658 | 51791961 | 51791658 | ID=Msa0736000-mRNA-1:three_prime_utr;Parent=Msa0736000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
