AlfalfaGEDB | Msa0777850

M. sativa cultivar zhongmu-4 / Msa0777850

KEGG: K10706
GO: -
PFAM: PF20073.2

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0777850	AES99078.2	81.288	823	114	5	1	812	85	878	0.0	1355

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0777850	sp\|Q00416\|SEN1_YEAST	29.664	654	350	24	163	782	1279	1856	1.92e-56	215

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0777850	G7KFP1	81.288	823	114	5	1	812	85	878	0.0	1355

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0011170	Msa0777850	0.804816	1.801014e-49	-8.615850e-47
Msa0014710	Msa0777850	0.815929	7.186763e-52	-8.615850e-47
Msa0017510	Msa0777850	0.858433	8.266893e-63	-8.615850e-47
Msa0028640	Msa0777850	0.814330	1.627376e-51	-8.615850e-47
Msa0107020	Msa0777850	0.804698	1.906587e-49	-8.615850e-47
Msa0112750	Msa0777850	0.809306	2.019580e-50	-8.615850e-47
Msa0114060	Msa0777850	0.811962	5.384491e-51	-8.615850e-47
Msa0140780	Msa0777850	0.814342	1.617377e-51	-8.615850e-47
Msa0153910	Msa0777850	0.813435	2.563437e-51	-8.615850e-47
Msa0157290	Msa0777850	0.857285	1.811730e-62	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0777850	MtrunA17_Chr5g0433361	81.288	823	114	5	1	812	85	878	0.0	1355
Msa0777850	MtrunA17_Chr5g0433471	56.566	891	246	13	1	811	77	906	0.0	905
Msa0777850	MtrunA17_Chr3g0109541	49.274	895	313	17	1	811	70	907	0.0	773
Msa0777850	MtrunA17_Chr5g0433321	48.698	883	310	15	1	811	72	883	0.0	761
Msa0777850	MtrunA17_Chr5g0433371	48.889	900	306	16	1	811	73	907	0.0	749
Msa0777850	MtrunA17_Chr5g0433421	69.683	442	108	4	385	811	561	991	0.0	602
Msa0777850	MtrunA17_Chr5g0433421	56.417	374	105	8	1	371	72	390	1.90e-116	377
Msa0777850	MtrunA17_Chr5g0433511	66.290	442	104	7	385	811	495	906	2.88e-180	543
Msa0777850	MtrunA17_Chr5g0433511	55.556	387	110	8	1	371	67	407	8.16e-116	374
Msa0777850	MtrunA17_Chr5g0433351	62.302	443	118	7	1	438	72	470	1.02e-174	512

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0777850	AT1G65810.2	45.036	826	381	18	20	822	89	864	0.0	635
Msa0777850	AT1G65810.1	45.036	826	381	18	20	822	89	864	0.0	635
Msa0777850	AT1G65810.3	45.036	826	381	18	20	822	89	864	0.0	634
Msa0777850	AT1G65780.1	40.046	879	381	18	6	811	71	876	0.0	562
Msa0777850	AT5G37140.1	45.852	687	313	17	154	798	2	671	0.0	551
Msa0777850	AT5G52090.1	45.577	667	313	17	170	798	1	655	0.0	543
Msa0777850	AT5G37150.1	44.196	672	323	16	165	798	161	818	3.80e-178	535
Msa0777850	AT4G05540.1	44.885	655	291	15	166	765	50	689	1.18e-171	513
Msa0777850	AT5G37165.1	48.810	420	197	10	399	809	1	411	5.34e-127	388
Msa0777850	AT5G37030.1	58.503	294	121	1	503	795	343	636	5.68e-117	369

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Find 145 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTATATGGGGACCACC+AGG	0.535882	5_2:+57278056	Msa0777850:CDS
AAAGTGAACTTAGTATGCTA+AGG	0.562963	5_2:-57278646	None:intergenic
AAATAGACAAAGAACAAATG+TGG	0.638430	5_2:+57279703	Msa0777850:CDS
AAATTTAACATTGACATGAG+AGG	0.626648	5_2:+57278689	Msa0777850:CDS
AACAAATGTGGCTATGACTA+GGG	0.495248	5_2:+57279715	Msa0777850:CDS
AACAATTCCATTACAGCTGT+CGG	0.482727	5_2:+57278871	Msa0777850:CDS
AACCCCAGAATCTAAAACCA+AGG	0.584042	5_2:-57280625	None:intergenic
AACTTATATGGGGACCACCA+GGG	0.643082	5_2:+57278057	Msa0777850:CDS
AAGAGTACATTTCTCCTTCA+AGG	0.396644	5_2:-57279228	None:intergenic
AAGGTAATCAAGGCAAGGAA+TGG	0.530345	5_2:+57277421	Msa0777850:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCAAGTCATTTAAGCTTTC+AGG	-	chr5_2:57277364-57277383	None:intergenic	30.0%
CTTGATTACCTTCTTAACAT+AGG	-	chr5_2:57277413-57277432	None:intergenic	30.0%
CTATGTTAAGAAGGTAATCA+AGG	+	chr5_2:57277411-57277430	Msa0777850:CDS	30.0%
AATATCCATCTTCATGCAAT+TGG	-	chr5_2:57277533-57277552	None:intergenic	30.0%
TGAATATTGAAGATGACTTG+TGG	+	chr5_2:57277602-57277621	Msa0777850:CDS	30.0%
GCTGATATCAAACTTATATG+GGG	+	chr5_2:57278047-57278066	Msa0777850:CDS	30.0%
TGCAAAATTGCAGTATTAGT+TGG	-	chr5_2:57278158-57278177	None:intergenic	30.0%
TCACTTGATCATGATACATA+TGG	+	chr5_2:57278212-57278231	Msa0777850:CDS	30.0%
GATCATGATACATATGGTTT+AGG	+	chr5_2:57278218-57278237	Msa0777850:CDS	30.0%
ATTGAATGAGATTCTCTACA+CGG	-	chr5_2:57278322-57278341	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	57277154	57280636	57277154	ID=Msa0777850;Name=Msa0777850
chr5_2	mRNA	57277154	57280636	57277154	ID=Msa0777850-mRNA-1;Parent=Msa0777850;Name=Msa0777850-mRNA-1;_AED=0.30;_eAED=0.32;_QI=0\|0.6\|0.33\|0.83\|1\|1\|6\|0\|836
chr5_2	exon	57277154	57277753	57277154	ID=Msa0777850-mRNA-1:exon:16934;Parent=Msa0777850-mRNA-1
chr5_2	exon	57277900	57278955	57277900	ID=Msa0777850-mRNA-1:exon:16935;Parent=Msa0777850-mRNA-1
chr5_2	exon	57279040	57279364	57279040	ID=Msa0777850-mRNA-1:exon:16936;Parent=Msa0777850-mRNA-1
chr5_2	exon	57279483	57279741	57279483	ID=Msa0777850-mRNA-1:exon:16937;Parent=Msa0777850-mRNA-1
chr5_2	exon	57279814	57280010	57279814	ID=Msa0777850-mRNA-1:exon:16938;Parent=Msa0777850-mRNA-1
chr5_2	exon	57280563	57280636	57280563	ID=Msa0777850-mRNA-1:exon:16939;Parent=Msa0777850-mRNA-1
chr5_2	CDS	57277154	57277753	57277154	ID=Msa0777850-mRNA-1:cds;Parent=Msa0777850-mRNA-1
chr5_2	CDS	57277900	57278955	57277900	ID=Msa0777850-mRNA-1:cds;Parent=Msa0777850-mRNA-1
chr5_2	CDS	57279040	57279364	57279040	ID=Msa0777850-mRNA-1:cds;Parent=Msa0777850-mRNA-1
chr5_2	CDS	57279483	57279741	57279483	ID=Msa0777850-mRNA-1:cds;Parent=Msa0777850-mRNA-1
chr5_2	CDS	57279814	57280010	57279814	ID=Msa0777850-mRNA-1:cds;Parent=Msa0777850-mRNA-1
chr5_2	CDS	57280563	57280636	57280563	ID=Msa0777850-mRNA-1:cds;Parent=Msa0777850-mRNA-1

Gene Sequence

>Msa0777850

TTGTTTGCTGTTTCTCAAGCTCCTTTTTGTGAGATCAATAATGTTCAAAAAACTGCATGGAAACTTTCAATTCCAAAAGATCAAAACCAATTCATACAGTTCCATCATGACATATGGCTGAAGAGTACAACTGAATCTGATGAAGTTGAAAATATTGGAAATTATAAACCTGTGTCAGGAGATCTCATTGCTTTCACACACATTAGGCCTGAAAGCTTAAATGACTTGAACACACACCAAAACCCCTACCGTATCGCCTATGTTAAGAAGGTAATCAAGGCAAGGAATGGAATTCCTGATAAAATCTCAGTACTGTCATGCAAATGCATGAAGATGGATATCAAAGATGACTTGCAGAACAACAAGGAGCTATCATCCAATTGCATGAAGATGGATATTGAAGACGACTTGTGTAACAACAAAGAGCTAGCATCCGAATGCATGAAGATGAATATTGAAGATGACTTGTGGAAGAACAAAGAGTTGAAACTGTATGCAGTTTACCTTATGAACATGACAACAAATGTTCATATTTGCAATGCCCTGAAATCAACCTCACACATGAATATAATTAAAACAGTGTTGGGACCGCGTCCAATTAGTGGAGAAAACTGTCAACTTTGCCTGTCTGAACCAGATAGTCGATCTACCTTCATAAAAGAAGACATGATAATTCGTTCTCAGAATCTAAATGAATCCCAAGAAGATGCTGTTTCAAGCTGTGTTAGCATGATGAATTGCAATCATGCTGATATCAAACTTATATGGGGACCACCAGGGACAGGGAAAACAAAGACAGTTGCATGCTTGCTATTTTCTCTACTCGAGCTAAAAACCAGGACATTGACATGTGCTCCAACTAATACTGCAATTTTGCAGGTGGCAATTCGGTTGCATAGGTTAGTTATGGATTCACTTGATCATGATACATATGGTTTAGGTGACATTGTGCTATTTGGAAATGGTAAGAGGATGAAATTAAGTCCTCATCCAGGCCTTGTCAATGTCTTTCTCGATAACCGTGTAGAGAATCTCATTCAATGCTTTCATCCAAATACTGGATGGGAGACTAACTTGCGATCCATGATAGAGTTGCTGAACTCCATGAAGAAATTTGCTAACAAAAATGTGACTAGTAAAGTTTTTGAATACAAGAAGATATTTGGTCAACAAAAAGAGAAGCTCGAGTTCTTGATGCAAACCTTACACACACACATGCCAACATGTCTCATTTCATTGGAAATGGTTGAAAAAATGCTTCAAGCTCTTGATTTGCTAAGGTCTCTTGGAAATTCCTTGGGGCAAGCCAAATTCAAGAAAAATAACTTTGATTGTATAGATGAGTGCCTTAGCATACTAAGTTCACTTTCTGAGACTGTTTCCCTTCCTAAATTTAACATTGACATGAGAGGTGCTATCAATAGAGTTCAAGTAGAAAACTTTTGCTTGTCGAATGCTTGTCTGATTATGTGCACTGCATCAAGTTCTATGAAACTAATTGATCCAGCAAAGGTGAAGCCAGTGCAATTTTTAGTAATCGATGAAGCTGCACAGCTCAAAGAATGTGAATCAACAATTCCATTACAGCTGTCGGGTCTCCACCGTTGCATCCTAATCGGAGATGAGAGACAACTTCCTGCATTAGTAAAAAGCAAGATAGCAGACCAATGTGAATTTGGACGAAGTATGTTTGAAAGACTTGTAATGTTGGGATACGAAAGGAAAATGCTTAATGTTCAGTATAGAATGCATCCTTCCATTAGCTTATTCCCGTGCGAAGAGTTCTATGATGGAAAGCTATCTGATGCTCCCATTGTCAGGGAAGAAAGCTATAATAAGCTTTTCCTTGAAGGAGAAATGTACTCTTCCTATTCTTTTATTAACATAGCTAAGGGTAAAGAGCAATTTGGTCATGGACAAAGTCTGAAGAACATGGTTCAGGTTGCTGTTATTTCTGAGATAATTAAAAGTCTTTATGAAGTGTTCATGAAGACAAGGAAGAAAGTTAGCATAGGAATCATATCTCCATATAATGCTCAAGTTTATGAAATTCAGGAGGAAATTGAGCAGTACACTCGGGTTGCTAATTCTAAGTTCTCTGTAAATGTTCGTTCTGTTGATGGTTTTCAAGGTGGTGAGGAAGATATTATAATAATATCTACCGTGAGATCTAATGGTACTGGTGATGTTGGTTTTCTTTCAAATAGACAAAGAACAAATGTGGCTATGACTAGGGCTAGATACTGTCTTTGGATATTAGGAAATGCATCTACTTTAATCAACAGTGACTCTGTTTGGAGAAATGTAGTTATTGATGCTAAGAATAGGGATTGTTTCCACAATGCTGAAGAGGACAAAAAATTGGCCCGGGCTATTAAGAATGTTCTGTTCCAGATTCAACGACTGGAAGAATTTGAGTCACCATTCAAGAAACGGCTTCCTTATTACGCCGCCATTATCAAGATTGGCGCTAAAGCTGGGAGAACTCACTCTTTGGTTCCTTGGTTTTAG

Protein sequence

>Msa0777850

LFAVSQAPFCEINNVQKTAWKLSIPKDQNQFIQFHHDIWLKSTTESDEVENIGNYKPVSGDLIAFTHIRPESLNDLNTHQNPYRIAYVKKVIKARNGIPDKISVLSCKCMKMDIKDDLQNNKELSSNCMKMDIEDDLCNNKELASECMKMNIEDDLWKNKELKLYAVYLMNMTTNVHICNALKSTSHMNIIKTVLGPRPISGENCQLCLSEPDSRSTFIKEDMIIRSQNLNESQEDAVSSCVSMMNCNHADIKLIWGPPGTGKTKTVACLLFSLLELKTRTLTCAPTNTAILQVAIRLHRLVMDSLDHDTYGLGDIVLFGNGKRMKLSPHPGLVNVFLDNRVENLIQCFHPNTGWETNLRSMIELLNSMKKFANKNVTSKVFEYKKIFGQQKEKLEFLMQTLHTHMPTCLISLEMVEKMLQALDLLRSLGNSLGQAKFKKNNFDCIDECLSILSSLSETVSLPKFNIDMRGAINRVQVENFCLSNACLIMCTASSSMKLIDPAKVKPVQFLVIDEAAQLKECESTIPLQLSGLHRCILIGDERQLPALVKSKIADQCEFGRSMFERLVMLGYERKMLNVQYRMHPSISLFPCEEFYDGKLSDAPIVREESYNKLFLEGEMYSSYSFINIAKGKEQFGHGQSLKNMVQVAVISEIIKSLYEVFMKTRKKVSIGIISPYNAQVYEIQEEIEQYTRVANSKFSVNVRSVDGFQGGEEDIIIISTVRSNGTGDVGFLSNRQRTNVAMTRARYCLWILGNASTLINSDSVWRNVVIDAKNRDCFHNAEEDKKLARAIKNVLFQIQRLEEFESPFKKRLPYYAAIIKIGAKAGRTHSLVPWF*