Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837650 | XP_024640205.1 | 98.671 | 301 | 3 | 1 | 1 | 301 | 1 | 300 | 0.0 | 597 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837650 | sp|Q9FJW5|TRB2_ARATH | 52.824 | 301 | 130 | 2 | 1 | 297 | 1 | 293 | 4.30e-73 | 229 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837650 | A0A396HT72 | 96.358 | 302 | 3 | 1 | 1 | 302 | 1 | 294 | 0.0 | 580 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0837650 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046760 | Msa0837650 | 0.846186 | 2.543580e-59 | -8.615850e-47 |
| Msa0057370 | Msa0837650 | 0.814687 | 1.356837e-51 | -8.615850e-47 |
| Msa0065010 | Msa0837650 | 0.804020 | 2.639106e-49 | -8.615850e-47 |
| Msa0102400 | Msa0837650 | 0.805904 | 1.065731e-49 | -8.615850e-47 |
| Msa0619180 | Msa0837650 | 0.805302 | 1.425552e-49 | -8.615850e-47 |
| Msa0626680 | Msa0837650 | 0.818792 | 1.628979e-52 | -8.615850e-47 |
| Msa0646130 | Msa0837650 | 0.805296 | 1.429889e-49 | -8.615850e-47 |
| Msa0651150 | Msa0837650 | 0.806051 | 9.923325e-50 | -8.615850e-47 |
| Msa0664760 | Msa0837650 | 0.810791 | 9.669335e-51 | -8.615850e-47 |
| Msa0677770 | Msa0837650 | 0.817962 | 2.512418e-52 | -8.615850e-47 |
| Msa0682090 | Msa0837650 | 0.820065 | 8.350316e-53 | -8.615850e-47 |
| Msa0682140 | Msa0837650 | 0.821031 | 5.010962e-53 | -8.615850e-47 |
| Msa0837650 | Msa0947530 | -0.807612 | 4.643379e-50 | -8.615850e-47 |
| Msa0837650 | Msa1021510 | 0.821658 | 3.590914e-53 | -8.615850e-47 |
| Msa0837650 | Msa1028350 | 0.823351 | 1.451421e-53 | -8.615850e-47 |
| Msa0837650 | Msa1105500 | 0.804745 | 1.863852e-49 | -8.615850e-47 |
| Msa0837650 | Msa1118940 | 0.817185 | 3.759929e-52 | -8.615850e-47 |
| Msa0837650 | Msa1129690 | 0.812191 | 4.799312e-51 | -8.615850e-47 |
| Msa0837650 | Msa1162830 | 0.830697 | 2.538426e-55 | -8.615850e-47 |
| Msa0837650 | Msa1219810 | 0.809066 | 2.273221e-50 | -8.615850e-47 |
| Msa0837650 | Msa1223330 | 0.828709 | 7.732795e-55 | -8.615850e-47 |
| Msa0837650 | Msa1294960 | 0.836203 | 1.073890e-56 | -8.615850e-47 |
| Msa0837650 | Msa1333970 | 0.821288 | 4.372284e-53 | -8.615850e-47 |
| Msa0837650 | Msa1370620 | 0.815658 | 8.257230e-52 | -8.615850e-47 |
| Msa0837650 | Msa1435400 | 0.818575 | 1.824640e-52 | -8.615850e-47 |
| Msa0837650 | Msa1449910 | 0.809431 | 1.898954e-50 | -8.615850e-47 |
| Msa0126770 | Msa0837650 | 0.813995 | 1.930282e-51 | -8.615850e-47 |
| Msa0140520 | Msa0837650 | -0.805840 | 1.099381e-49 | -8.615850e-47 |
| Msa0171850 | Msa0837650 | 0.806199 | 9.239321e-50 | -8.615850e-47 |
| Msa0177210 | Msa0837650 | 0.810872 | 9.285231e-51 | -8.615850e-47 |
| Msa0185510 | Msa0837650 | 0.811825 | 5.769077e-51 | -8.615850e-47 |
| Msa0198940 | Msa0837650 | 0.822975 | 1.776963e-53 | -8.615850e-47 |
| Msa0208810 | Msa0837650 | 0.809673 | 1.684243e-50 | -8.615850e-47 |
| Msa0437400 | Msa0837650 | 0.807317 | 5.362360e-50 | -8.615850e-47 |
| Msa0437510 | Msa0837650 | 0.804628 | 1.972149e-49 | -8.615850e-47 |
| Msa0239490 | Msa0837650 | 0.805363 | 1.384217e-49 | -8.615850e-47 |
| Msa0245850 | Msa0837650 | 0.811874 | 5.626425e-51 | -8.615850e-47 |
| Msa0252240 | Msa0837650 | 0.800533 | 1.378403e-48 | -8.615850e-47 |
| Msa0268090 | Msa0837650 | 0.802741 | 4.857500e-49 | -8.615850e-47 |
| Msa0542160 | Msa0837650 | 0.805107 | 1.566203e-49 | -8.615850e-47 |
| Msa0546570 | Msa0837650 | 0.823777 | 1.153967e-53 | -8.615850e-47 |
| Msa0578090 | Msa0837650 | 0.808552 | 2.928254e-50 | -8.615850e-47 |
| Msa0586850 | Msa0837650 | 0.815509 | 8.914743e-52 | -8.615850e-47 |
| Msa0597000 | Msa0837650 | 0.810422 | 1.161996e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837650 | MtrunA17_Chr5g0401061 | 96.358 | 302 | 3 | 1 | 1 | 302 | 1 | 294 | 0.0 | 580 |
| Msa0837650 | MtrunA17_Chr4g0054131 | 64.353 | 317 | 90 | 7 | 1 | 302 | 1 | 309 | 8.34e-103 | 303 |
| Msa0837650 | MtrunA17_Chr2g0293381 | 47.561 | 246 | 120 | 5 | 1 | 244 | 1 | 239 | 1.16e-64 | 205 |
| Msa0837650 | MtrunA17_Chr8g0384671 | 46.559 | 247 | 119 | 5 | 1 | 244 | 1 | 237 | 1.12e-62 | 200 |
| Msa0837650 | MtrunA17_Chr8g0342871 | 33.808 | 281 | 167 | 6 | 1 | 278 | 1 | 265 | 1.83e-33 | 124 |
| Msa0837650 | MtrunA17_Chr1g0166681 | 66.292 | 89 | 28 | 1 | 1 | 89 | 1 | 87 | 6.74e-33 | 120 |
| Msa0837650 | MtrunA17_Chr2g0329921 | 36.681 | 229 | 92 | 8 | 1 | 195 | 1 | 210 | 6.44e-32 | 120 |
| Msa0837650 | MtrunA17_Chr8g0383821 | 43.519 | 108 | 60 | 1 | 1 | 107 | 1 | 108 | 9.74e-24 | 94.4 |
| Msa0837650 | MtrunA17_Chr1g0195261 | 66.000 | 50 | 17 | 0 | 1 | 50 | 1 | 50 | 4.25e-16 | 71.2 |
| Msa0837650 | MtrunA17_Chr1g0195251 | 38.017 | 121 | 71 | 2 | 129 | 249 | 295 | 411 | 5.68e-14 | 72.0 |
| Msa0837650 | MtrunA17_Chr3g0107471 | 60.377 | 53 | 17 | 2 | 5 | 56 | 569 | 618 | 8.51e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0837650 | AT5G67580.2 | 52.824 | 301 | 130 | 2 | 1 | 297 | 1 | 293 | 4.37e-74 | 229 |
| Msa0837650 | AT5G67580.1 | 52.824 | 301 | 130 | 2 | 1 | 297 | 1 | 293 | 4.37e-74 | 229 |
| Msa0837650 | AT1G49950.3 | 47.410 | 251 | 116 | 5 | 1 | 246 | 1 | 240 | 1.81e-69 | 218 |
| Msa0837650 | AT1G49950.1 | 47.410 | 251 | 116 | 5 | 1 | 246 | 1 | 240 | 1.81e-69 | 218 |
| Msa0837650 | AT1G49950.2 | 47.410 | 251 | 116 | 5 | 1 | 246 | 1 | 240 | 1.81e-69 | 218 |
| Msa0837650 | AT3G49850.1 | 50.165 | 303 | 131 | 6 | 1 | 297 | 1 | 289 | 9.83e-65 | 206 |
| Msa0837650 | AT3G49850.2 | 50.165 | 303 | 131 | 6 | 1 | 297 | 1 | 289 | 9.83e-65 | 206 |
| Msa0837650 | AT1G72740.2 | 33.447 | 293 | 168 | 5 | 1 | 292 | 1 | 267 | 8.93e-33 | 122 |
| Msa0837650 | AT1G72740.1 | 33.447 | 293 | 174 | 6 | 1 | 292 | 1 | 273 | 3.59e-31 | 118 |
| Msa0837650 | AT1G17520.4 | 38.693 | 199 | 115 | 3 | 1 | 195 | 1 | 196 | 6.98e-29 | 112 |
| Msa0837650 | AT1G17520.1 | 34.483 | 290 | 166 | 7 | 1 | 283 | 1 | 273 | 1.72e-28 | 111 |
| Msa0837650 | AT1G17520.3 | 39.000 | 200 | 114 | 4 | 1 | 195 | 1 | 197 | 3.10e-28 | 110 |
| Msa0837650 | AT1G17520.2 | 34.708 | 291 | 165 | 8 | 1 | 283 | 1 | 274 | 7.86e-28 | 109 |
Find 98 sgRNAs with CRISPR-Local
Find 319 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAAGCCTCTTTCAGTTTC+TGG | 0.037607 | 5_4:-11686296 | Msa0837650:CDS |
| ATGTGCAATTGAAGTTAATT+TGG | 0.194499 | 5_4:-11687860 | Msa0837650:five_prime_UTR |
| GGCTTAGGAGCTGCAACTTC+TGG | 0.214227 | 5_4:+11686311 | None:intergenic |
| AATGCAGAAGACTTAATATT+TGG | 0.225595 | 5_4:-11683758 | Msa0837650:CDS |
| CGCAAAATGGTGCTGAAATC+TGG | 0.244024 | 5_4:+11686731 | None:intergenic |
| TAACCTTGATATTTGTTCTT+TGG | 0.249384 | 5_4:+11686259 | None:intergenic |
| AGCATTCAAAATGGGCTAAA+AGG | 0.270295 | 5_4:+11683674 | None:intergenic |
| ATGCATTAAGTAATGTTTCT+TGG | 0.282657 | 5_4:+11683723 | None:intergenic |
| ACATAAATGTGACTGCAATA+TGG | 0.284211 | 5_4:-11686436 | Msa0837650:CDS |
| TTCTGGATTATATTGAACTA+TGG | 0.296937 | 5_4:+11686328 | None:intergenic |
| GTTTGAAAAGAGATCAATTC+AGG | 0.318214 | 5_4:+11687898 | None:intergenic |
| CTAGGAGAAAGCATTCAAAA+TGG | 0.335895 | 5_4:+11683665 | None:intergenic |
| ATTTGAACGCATGCGCAAAA+TGG | 0.355071 | 5_4:+11686718 | None:intergenic |
| CATAAATGTGACTGCAATAT+GGG | 0.356271 | 5_4:-11686435 | Msa0837650:CDS |
| TGACAATCGAGTCGAATATA+AGG | 0.364822 | 5_4:+11685718 | None:intergenic |
| GAAAGGGTATAGGTGCGAAT+TGG | 0.368255 | 5_4:+11688284 | None:intergenic |
| TGAAGTTAATTTGGCTATTG+AGG | 0.371174 | 5_4:-11687851 | Msa0837650:five_prime_UTR |
| AAAGGGTATAGGTGCGAATT+GGG | 0.374310 | 5_4:+11688285 | None:intergenic |
| ATAATCTGAGCTGTGGTTGC+TGG | 0.375315 | 5_4:-11687926 | Msa0837650:five_prime_UTR |
| TCAAATACGGGGCTGGAAAA+TGG | 0.375403 | 5_4:-11686772 | Msa0837650:CDS |
| TCTGCAGTCCATTTCTGCTT+AGG | 0.379164 | 5_4:+11686824 | None:intergenic |
| GAACTATGGCGGTCGAGGTT+GGG | 0.406154 | 5_4:+11686342 | None:intergenic |
| AGCAGCTGCAAAAGCAGTTG+CGG | 0.409911 | 5_4:-11683892 | Msa0837650:CDS |
| GACAGTAACTTTATGAGGTT+TGG | 0.411444 | 5_4:+11684551 | None:intergenic |
| CGCCATTGCTGCTTATATAG+AGG | 0.411827 | 5_4:-11685664 | Msa0837650:intron |
| ATGCTCTTCCTTGTTACTCC+TGG | 0.423977 | 5_4:-11684033 | Msa0837650:CDS |
| TGGGTGCTCCTAAGCAGAAA+TGG | 0.425779 | 5_4:-11686832 | Msa0837650:CDS |
| GAAGAGGCAGCTCTGAAAGC+TGG | 0.428221 | 5_4:-11686800 | Msa0837650:CDS |
| AGCTGCAAAAGCAGTTGCGG+AGG | 0.430575 | 5_4:-11683889 | Msa0837650:CDS |
| TTGTTGACAGTAACTTTATG+AGG | 0.436494 | 5_4:+11684546 | None:intergenic |
| TTAAGTAATGTTTCTTGGTA+AGG | 0.449768 | 5_4:+11683728 | None:intergenic |
| TGGCTATTGAGGTCAATGTT+TGG | 0.455593 | 5_4:-11687840 | Msa0837650:intron |
| CCAGAAACTGAAAGAGGCTT+AGG | 0.456807 | 5_4:+11686296 | None:intergenic |
| CGACTCGATTGTCAAGTTGA+AGG | 0.467379 | 5_4:-11685709 | Msa0837650:CDS |
| TGAACTATGGCGGTCGAGGT+TGG | 0.475508 | 5_4:+11686341 | None:intergenic |
| AAAGCTGGAGTAGTCAAATA+CGG | 0.485337 | 5_4:-11686785 | Msa0837650:CDS |
| GTCAACAAAACTGAAGCATA+TGG | 0.488294 | 5_4:-11684531 | Msa0837650:CDS |
| TAAGCTATGAACAGGACAAA+TGG | 0.495183 | 5_4:-11686463 | Msa0837650:intron |
| TGACTGCAATATGGGGATCC+AGG | 0.496295 | 5_4:-11686427 | Msa0837650:CDS |
| TGAATGGATCGGAGAATGAA+AGG | 0.497750 | 5_4:+11688267 | None:intergenic |
| GGCCGTGGACTTCTTCCAAT+GGG | 0.500319 | 5_4:-11686851 | Msa0837650:exon |
| AAGCCTCTTTCAGTTTCTGG+TGG | 0.504900 | 5_4:-11686293 | Msa0837650:CDS |
| CTTCCTTGTTACTCCTGGAA+GGG | 0.505904 | 5_4:-11684028 | Msa0837650:CDS |
| GAAATCTGGGTCTGTAAGAA+TGG | 0.507475 | 5_4:+11686745 | None:intergenic |
| GCGGCAATGTCAGAACCCTT+TGG | 0.508392 | 5_4:+11685684 | None:intergenic |
| TCTTCCTTGTTACTCCTGGA+AGG | 0.509910 | 5_4:-11684029 | Msa0837650:CDS |
| TTATGAGGTTTGGTGGAGAC+CGG | 0.510215 | 5_4:+11684561 | None:intergenic |
| GACAGGTAAATCATAAGTAC+AGG | 0.511866 | 5_4:-11684094 | Msa0837650:intron |
| AGTAACTTTATGAGGTTTGG+TGG | 0.512273 | 5_4:+11684554 | None:intergenic |
| TAGGAGAAAGCATTCAAAAT+GGG | 0.512658 | 5_4:+11683666 | None:intergenic |
| TGCTGTCTCAGCCTCAGCAA+TGG | 0.514472 | 5_4:+11683857 | None:intergenic |
| GGCTGAGACAGCAGCAAGGG+AGG | 0.514772 | 5_4:-11683847 | Msa0837650:CDS |
| ATCGGAGAATGAAAGGGTAT+AGG | 0.531059 | 5_4:+11688274 | None:intergenic |
| AAATTAAAGAAGAAATTGAA+TGG | 0.532572 | 5_4:+11688251 | None:intergenic |
| TGGCGGTCGAGGTTGGGTGG+TGG | 0.532625 | 5_4:+11686348 | None:intergenic |
| GGAGTAGTCAAATACGGGGC+TGG | 0.532847 | 5_4:-11686779 | Msa0837650:CDS |
| CTTCCAAAGAACAAATATCA+AGG | 0.532967 | 5_4:-11686262 | Msa0837650:intron |
| AAGCTGGAGTAGTCAAATAC+GGG | 0.536563 | 5_4:-11686784 | Msa0837650:CDS |
| AAAGAAGAAATTGAATGGAT+CGG | 0.537721 | 5_4:+11688256 | None:intergenic |
| GCAAAATGGTGCTGAAATCT+GGG | 0.539501 | 5_4:+11686732 | None:intergenic |
| ATATTGAACTATGGCGGTCG+AGG | 0.543535 | 5_4:+11686337 | None:intergenic |
| CCTTGTTACTCCTGGAAGGG+AGG | 0.547136 | 5_4:-11684025 | Msa0837650:CDS |
| GGCAGAAGCTGCCATTGCTG+AGG | 0.547830 | 5_4:-11683868 | Msa0837650:CDS |
| AAAACAATACTGTCATAAGA+AGG | 0.548234 | 5_4:-11686872 | Msa0837650:five_prime_UTR |
| GAATGGATCGGAGAATGAAA+GGG | 0.551647 | 5_4:+11688268 | None:intergenic |
| TACCTCTATATAAGCAGCAA+TGG | 0.560953 | 5_4:+11685662 | None:intergenic |
| TGAGGCTGAGACAGCAGCAA+GGG | 0.562956 | 5_4:-11683850 | Msa0837650:CDS |
| CTATGGCGGTCGAGGTTGGG+TGG | 0.567809 | 5_4:+11686345 | None:intergenic |
| TTCTGCTTAGGAGCACCCAT+TGG | 0.569658 | 5_4:+11686836 | None:intergenic |
| TACCTCAATAGGATCAATAC+CGG | 0.570066 | 5_4:-11684580 | Msa0837650:intron |
| GAAATGGACTGCAGAAGAAG+AGG | 0.574527 | 5_4:-11686816 | Msa0837650:CDS |
| TGTCAAGTTGAAGGAGCCAA+AGG | 0.577322 | 5_4:-11685700 | Msa0837650:CDS |
| AGGCCGTGGACTTCTTCCAA+TGG | 0.581127 | 5_4:-11686852 | Msa0837650:exon |
| GCGTTCAAATGTAGATCTCA+AGG | 0.582023 | 5_4:-11686705 | Msa0837650:intron |
| CTCTATATAAGCAGCAATGG+CGG | 0.582614 | 5_4:+11685665 | None:intergenic |
| GGGAGAATTTACTTACGTGC+GGG | 0.584352 | 5_4:+11688305 | None:intergenic |
| GTCAAGTTGAAGGAGCCAAA+GGG | 0.586146 | 5_4:-11685699 | Msa0837650:CDS |
| CTAGTACTAGAGAAAACCTC+GGG | 0.586423 | 5_4:+11686905 | None:intergenic |
| GAGGGGTGTGACAGCTCAAG+AGG | 0.591616 | 5_4:-11683922 | Msa0837650:CDS |
| CCTCCCTTCCAGGAGTAACA+AGG | 0.596501 | 5_4:+11684025 | None:intergenic |
| GTTCCACCAGAAACTGAAAG+AGG | 0.604200 | 5_4:+11686290 | None:intergenic |
| CTGAGGCTGAGACAGCAGCA+AGG | 0.616768 | 5_4:-11683851 | Msa0837650:CDS |
| AACAGCTGAAGCTGAAGCAG+AGG | 0.618779 | 5_4:-11683820 | Msa0837650:CDS |
| GTTTGCAAAAGCAGCAACGA+AGG | 0.621698 | 5_4:-11683787 | Msa0837650:CDS |
| CTGAAGCATATGGTGGCAAG+CGG | 0.627992 | 5_4:-11684521 | Msa0837650:CDS |
| AATATGGGGATCCAGGCAGA+AGG | 0.633799 | 5_4:-11686420 | Msa0837650:CDS |
| TGGATTATATTGAACTATGG+CGG | 0.635820 | 5_4:+11686331 | None:intergenic |
| TGGGAGAATTTACTTACGTG+CGG | 0.636450 | 5_4:+11688304 | None:intergenic |
| GGCAAGCGGCAAATTAGTGA+AGG | 0.638026 | 5_4:-11684507 | Msa0837650:intron |
| GCTATGAACAGGACAAATGG+AGG | 0.639785 | 5_4:-11686460 | Msa0837650:intron |
| ATAAATGTGACTGCAATATG+GGG | 0.648699 | 5_4:-11686434 | Msa0837650:CDS |
| CACCCATTGGAAGAAGTCCA+CGG | 0.659202 | 5_4:+11686849 | None:intergenic |
| TCTAGTACTAGAGAAAACCT+CGG | 0.664893 | 5_4:+11686904 | None:intergenic |
| CAGAAGAAGACTGCATCCCG+AGG | 0.670596 | 5_4:-11686921 | Msa0837650:five_prime_UTR |
| AACAAAACTGAAGCATATGG+TGG | 0.677408 | 5_4:-11684528 | Msa0837650:CDS |
| ATACTGTCATAAGAAGGCCG+TGG | 0.682217 | 5_4:-11686866 | Msa0837650:five_prime_UTR |
| AGCTGGAGTAGTCAAATACG+GGG | 0.718064 | 5_4:-11686783 | Msa0837650:CDS |
| CAGACAAATAATCTGAGCTG+TGG | 0.721649 | 5_4:-11687933 | Msa0837650:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATTTTTTTTTTTTTGAAA+TGG | - | chr5_4:11683780-11683799 | Msa0837650:CDS | 10.0% |
| !!! | TTTAAAAAAAATAGATTTTG+AGG | - | chr5_4:11684253-11684272 | Msa0837650:intron | 10.0% |
| !!! | TTGTTAAAAAAATCATTTTT+AGG | + | chr5_4:11684455-11684474 | None:intergenic | 10.0% |
| !!! | AAATGATTTTTTTAACAAAA+TGG | - | chr5_4:11684457-11684476 | Msa0837650:intron | 10.0% |
| !! | GTTAACTTTATAAAAAATTA+GGG | + | chr5_4:11688231-11688250 | None:intergenic | 10.0% |
| !! | AGTTAACTTTATAAAAAATT+AGG | + | chr5_4:11688232-11688251 | None:intergenic | 10.0% |
| !! | ATTAGCATTATAAAAAATTA+GGG | + | chr5_4:11688380-11688399 | None:intergenic | 10.0% |
| !! | AATTAGCATTATAAAAAATT+AGG | + | chr5_4:11688381-11688400 | None:intergenic | 10.0% |
| !! | AAATTAAAGAAGAAATTGAA+TGG | + | chr5_4:11683612-11683631 | None:intergenic | 15.0% |
| !!! | AAAACAAAATTTGTTAATGT+TGG | - | chr5_4:11683731-11683750 | Msa0837650:three_prime_UTR | 15.0% |
| !!! | ATCTTCAAAAAATGATTTTT+AGG | + | chr5_4:11684349-11684368 | None:intergenic | 15.0% |
| !!! | TCTATTTTTTTCTAAATACA+AGG | + | chr5_4:11684394-11684413 | None:intergenic | 15.0% |
| !! | TCAAAAAAATCCAAAATAAA+CGG | - | chr5_4:11684554-11684573 | Msa0837650:CDS | 15.0% |
| !!! | TTAAGTCTTATAATTATTGA+AGG | - | chr5_4:11684869-11684888 | Msa0837650:intron | 15.0% |
| !! | AGTAAAATTATTGTTATGTT+AGG | - | chr5_4:11685224-11685243 | Msa0837650:intron | 15.0% |
| !!! | CATTAATTCATTTAAAACTT+TGG | + | chr5_4:11685799-11685818 | None:intergenic | 15.0% |
| !!! | TAAAAGTATTTTAAACTCTT+TGG | - | chr5_4:11686459-11686478 | Msa0837650:intron | 15.0% |
| !! | ATAAACAACATATAAATCAA+TGG | + | chr5_4:11686951-11686970 | None:intergenic | 15.0% |
| !! | AGTAATATAGGTTTATTAAA+AGG | + | chr5_4:11687675-11687694 | None:intergenic | 15.0% |
| !! | TATTTATCTTACAGTAATAT+AGG | + | chr5_4:11687687-11687706 | None:intergenic | 15.0% |
| !! | TATTACTGTAAGATAAATAT+TGG | - | chr5_4:11687688-11687707 | Msa0837650:intron | 15.0% |
| !! | AAGTAATTTAATATGATACT+TGG | - | chr5_4:11687713-11687732 | Msa0837650:intron | 15.0% |
| !!! | AATCATTTTTTTTTGTAGCA+AGG | - | chr5_4:11683812-11683831 | Msa0837650:CDS | 20.0% |
| !! | TATGAATTGTATTGTTTCAA+TGG | + | chr5_4:11683856-11683875 | None:intergenic | 20.0% |
| !! | TTGTGAAAAATCATCAAATT+AGG | + | chr5_4:11683889-11683908 | None:intergenic | 20.0% |
| !!! | ATAACAATTTTTGGTGTATT+GGG | + | chr5_4:11684154-11684173 | None:intergenic | 20.0% |
| !!! | AATAACAATTTTTGGTGTAT+TGG | + | chr5_4:11684155-11684174 | None:intergenic | 20.0% |
| !!! | GTAAAAAGTTATAACTTTTG+GGG | + | chr5_4:11684205-11684224 | None:intergenic | 20.0% |
| !!! | CGTAAAAAGTTATAACTTTT+GGG | + | chr5_4:11684206-11684225 | None:intergenic | 20.0% |
| !! | ATTCATAATTGGATAGAAAT+TGG | - | chr5_4:11684585-11684604 | Msa0837650:intron | 20.0% |
| !! | TGGTATATGATAGAATATTA+TGG | - | chr5_4:11684687-11684706 | Msa0837650:intron | 20.0% |
| !! | TCATATTAAACTATATACCT+AGG | - | chr5_4:11685347-11685366 | Msa0837650:intron | 20.0% |
| !! | TTACACTTTATAGAACTAAA+TGG | - | chr5_4:11685647-11685666 | Msa0837650:intron | 20.0% |
| !!! | AAACATTTTGTAGTTGTAAT+TGG | + | chr5_4:11685984-11686003 | None:intergenic | 20.0% |
| !!! | TCTTTTTAATAATGACAGAT+TGG | - | chr5_4:11686115-11686134 | Msa0837650:intron | 20.0% |
| !! | GATTATATATACCATTAATG+AGG | + | chr5_4:11686239-11686258 | None:intergenic | 20.0% |
| !!! | GTTTCTCATATAGTTTTTAT+AGG | + | chr5_4:11686787-11686806 | None:intergenic | 20.0% |
| !! | GAAAAACTTAGATATTAATG+AGG | - | chr5_4:11686813-11686832 | Msa0837650:CDS | 20.0% |
| !!! | AAAAAACTGCTCTAATATTT+TGG | + | chr5_4:11687035-11687054 | None:intergenic | 20.0% |
| !! | ATATCCAATAAATTATTCAG+TGG | + | chr5_4:11687477-11687496 | None:intergenic | 20.0% |
| !! | TTATTGGATATTGAATGTTA+TGG | - | chr5_4:11687486-11687505 | Msa0837650:intron | 20.0% |
| !! | ATTGGTAAAGAGAAATTAAT+TGG | - | chr5_4:11687543-11687562 | Msa0837650:intron | 20.0% |
| !! | TGAATACAAAAAATCTGTTA+TGG | - | chr5_4:11687581-11687600 | Msa0837650:intron | 20.0% |
| ! | AAAGAAGAAATTGAATGGAT+CGG | + | chr5_4:11683607-11683626 | None:intergenic | 25.0% |
| !!! | ATTTCTTCTTTAATTTTCCC+AGG | - | chr5_4:11683616-11683635 | Msa0837650:intron | 25.0% |
| !!! | ACAAAATTTGTTAATGTTGG+TGG | - | chr5_4:11683734-11683753 | Msa0837650:three_prime_UTR | 25.0% |
| !! | ATTGATCTCTTTTCAAACAT+TGG | - | chr5_4:11683967-11683986 | Msa0837650:CDS | 25.0% |
| ! | ATGTGCAATTGAAGTTAATT+TGG | - | chr5_4:11684000-11684019 | Msa0837650:CDS | 25.0% |
| !! | GGGACAAAAATAACAATTTT+TGG | + | chr5_4:11684163-11684182 | None:intergenic | 25.0% |
| !!! | GTTATTTTTGTCCCAAAAAA+TGG | - | chr5_4:11684169-11684188 | Msa0837650:intron | 25.0% |
| !! | GCGTAAAAAGTTATAACTTT+TGG | + | chr5_4:11684207-11684226 | None:intergenic | 25.0% |
| ! | CTATCCAATTATGAATCTAA+GGG | + | chr5_4:11684581-11684600 | None:intergenic | 25.0% |
| ! | TCTATCCAATTATGAATCTA+AGG | + | chr5_4:11684582-11684601 | None:intergenic | 25.0% |
| !! | AGATTTAGAGTTTAATGAGT+TGG | - | chr5_4:11684653-11684672 | Msa0837650:intron | 25.0% |
| !! | ATGAGTTGGATAGAAATATA+TGG | - | chr5_4:11684667-11684686 | Msa0837650:intron | 25.0% |
| ! | AAAACAATACTGTCATAAGA+AGG | - | chr5_4:11684988-11685007 | Msa0837650:intron | 25.0% |
| !!! | TTTGTTTTAAATGTTCTAGC+AGG | - | chr5_4:11685183-11685202 | Msa0837650:intron | 25.0% |
| ! | TAACTGTTTACTTTATCACA+AGG | - | chr5_4:11685283-11685302 | Msa0837650:intron | 25.0% |
| !!! | TGGTGGTTATTTTCATTTTT+CGG | + | chr5_4:11685498-11685517 | None:intergenic | 25.0% |
| ! | TTCTGGATTATATTGAACTA+TGG | + | chr5_4:11685535-11685554 | None:intergenic | 25.0% |
| ! | TAACCTTGATATTTGTTCTT+TGG | + | chr5_4:11685604-11685623 | None:intergenic | 25.0% |
| ! | TATAATAGTTATCAGCTCTA+AGG | - | chr5_4:11685748-11685767 | Msa0837650:CDS | 25.0% |
| !! | AAACAAGTTGCAAACAATTT+TGG | - | chr5_4:11685823-11685842 | Msa0837650:intron | 25.0% |
| ! | TATGAAGGAATTGGAATAAA+TGG | + | chr5_4:11686362-11686381 | None:intergenic | 25.0% |
| ! | TATTAATGAGGATCCAAATA+AGG | - | chr5_4:11686825-11686844 | Msa0837650:CDS | 25.0% |
| ! | GTTCTATCATAAACCTTATT+TGG | + | chr5_4:11686841-11686860 | None:intergenic | 25.0% |
| ! | AGTTATTAGCAGAAAATGAT+TGG | - | chr5_4:11687525-11687544 | Msa0837650:intron | 25.0% |
| !!! | CATCAATTTGAGATTTTGAA+AGG | + | chr5_4:11687902-11687921 | None:intergenic | 25.0% |
| ! | AATGCAGAAGACTTAATATT+TGG | - | chr5_4:11688102-11688121 | Msa0837650:intron | 25.0% |
| ! | TTAAGTAATGTTTCTTGGTA+AGG | + | chr5_4:11688135-11688154 | None:intergenic | 25.0% |
| ! | ATGCATTAAGTAATGTTTCT+TGG | + | chr5_4:11688140-11688159 | None:intergenic | 25.0% |
| AAAATGATGAATACTGACCT+GGG | + | chr5_4:11683636-11683655 | None:intergenic | 30.0% | |
| AAAAATGATGAATACTGACC+TGG | + | chr5_4:11683637-11683656 | None:intergenic | 30.0% | |
| GTTTGAAAAGAGATCAATTC+AGG | + | chr5_4:11683965-11683984 | None:intergenic | 30.0% | |
| ! | TGAAGTTAATTTGGCTATTG+AGG | - | chr5_4:11684009-11684028 | Msa0837650:CDS | 30.0% |
| ! | TCCCAAAAAATGGTGATTTT+TGG | - | chr5_4:11684179-11684198 | Msa0837650:intron | 30.0% |
| !!! | GCCAAAAATCACCATTTTTT+GGG | + | chr5_4:11684183-11684202 | None:intergenic | 30.0% |
| ! | TAACTTTTTACGCCCTATTT+AGG | - | chr5_4:11684214-11684233 | Msa0837650:intron | 30.0% |
| ! | AACTTTTTACGCCCTATTTA+GGG | - | chr5_4:11684215-11684234 | Msa0837650:intron | 30.0% |
| CATAATTGGATAGAAATTGG+AGG | - | chr5_4:11684588-11684607 | Msa0837650:intron | 30.0% | |
| ! | GTTTCTCTTACAGTTTTTCT+AGG | + | chr5_4:11684624-11684643 | None:intergenic | 30.0% |
| ! | TTCCTATACTGTTGCAATTT+TGG | + | chr5_4:11684832-11684851 | None:intergenic | 30.0% |
| AAATTGCAACAGTATAGGAA+CGG | - | chr5_4:11684832-11684851 | Msa0837650:intron | 30.0% | |
| ! | CAATAAAGTCAGACATTTTG+TGG | - | chr5_4:11684907-11684926 | Msa0837650:intron | 30.0% |
| TAAATGTTCTAGCAGGTTAT+AGG | - | chr5_4:11685190-11685209 | Msa0837650:intron | 30.0% | |
| AGTTATATAGTAACACACCT+AGG | + | chr5_4:11685367-11685386 | None:intergenic | 30.0% | |
| ACATAAATGTGACTGCAATA+TGG | - | chr5_4:11685424-11685443 | Msa0837650:intron | 30.0% | |
| CATAAATGTGACTGCAATAT+GGG | - | chr5_4:11685425-11685444 | Msa0837650:intron | 30.0% | |
| ATAAATGTGACTGCAATATG+GGG | - | chr5_4:11685426-11685445 | Msa0837650:intron | 30.0% | |
| !! | TGGTTATTTTCATTTTTCGG+GGG | + | chr5_4:11685495-11685514 | None:intergenic | 30.0% |
| !! | GTGGTTATTTTCATTTTTCG+GGG | + | chr5_4:11685496-11685515 | None:intergenic | 30.0% |
| !! | GGTGGTTATTTTCATTTTTC+GGG | + | chr5_4:11685497-11685516 | None:intergenic | 30.0% |
| TGGATTATATTGAACTATGG+CGG | + | chr5_4:11685532-11685551 | None:intergenic | 30.0% | |
| CTTCCAAAGAACAAATATCA+AGG | - | chr5_4:11685598-11685617 | Msa0837650:intron | 30.0% | |
| ! | CATTTAAAACTTTGGTATGC+TGG | + | chr5_4:11685791-11685810 | None:intergenic | 30.0% |
| TCAGAAAACAATATACCTTG+TGG | + | chr5_4:11685863-11685882 | None:intergenic | 30.0% | |
| ! | TGATGATTCTTTTCTAAGCA+TGG | - | chr5_4:11685907-11685926 | Msa0837650:intron | 30.0% |
| AAATTCACCACAATCTTAAG+GGG | + | chr5_4:11686048-11686067 | None:intergenic | 30.0% | |
| CAAATTCACCACAATCTTAA+GGG | + | chr5_4:11686049-11686068 | None:intergenic | 30.0% | |
| !!! | TGGCAATGTTTTTTCAATGA+TGG | - | chr5_4:11686083-11686102 | Msa0837650:intron | 30.0% |
| ACTGAGTGAGGAAAAAAATT+TGG | + | chr5_4:11686285-11686304 | None:intergenic | 30.0% | |
| TCAAACTGTTATGAAGGAAT+TGG | + | chr5_4:11686371-11686390 | None:intergenic | 30.0% | |
| TATAGGTCAAACTGTTATGA+AGG | + | chr5_4:11686377-11686396 | None:intergenic | 30.0% | |
| TAAAACAAGCATAGCAAAGA+TGG | - | chr5_4:11686552-11686571 | Msa0837650:intron | 30.0% | |
| AAAACAAGCATAGCAAAGAT+GGG | - | chr5_4:11686553-11686572 | Msa0837650:intron | 30.0% | |
| ACATATAAATCAATGGACCT+AGG | + | chr5_4:11686944-11686963 | None:intergenic | 30.0% | |
| GTTAGAACTAGTTGAAATTG+TGG | + | chr5_4:11686981-11687000 | None:intergenic | 30.0% | |
| !! | ACTAGTTCTAACATGTAACT+CGG | - | chr5_4:11686989-11687008 | Msa0837650:intron | 30.0% |
| !!! | ATATTTTGGTACCAGAAGAA+TGG | + | chr5_4:11687021-11687040 | None:intergenic | 30.0% |
| !!! | AGAGCAGTTTTTTCATTTGA+TGG | - | chr5_4:11687042-11687061 | Msa0837650:intron | 30.0% |
| CTGAAATTGTTTACCTCAAT+AGG | - | chr5_4:11687269-11687288 | Msa0837650:intron | 30.0% | |
| TTGTTGACAGTAACTTTATG+AGG | + | chr5_4:11687317-11687336 | None:intergenic | 30.0% | |
| CTGTCCACTGAATAATTTAT+TGG | - | chr5_4:11687470-11687489 | Msa0837650:intron | 30.0% | |
| CTTATGATTTACCTGTCATT+AGG | + | chr5_4:11687763-11687782 | None:intergenic | 30.0% | |
| !! | TTGAGATTTTGAAAGGATGT+TGG | + | chr5_4:11687895-11687914 | None:intergenic | 30.0% |
| !! | TAGGAGAAAGCATTCAAAAT+GGG | + | chr5_4:11688197-11688216 | None:intergenic | 30.0% |
| ATGCATTGAGAAACATTTCT+AGG | + | chr5_4:11688289-11688308 | None:intergenic | 30.0% | |
| !!! | GTTTCGTCTTTTGTTTTTCG+TGG | + | chr5_4:11683466-11683485 | None:intergenic | 35.0% |
| GATTATTTGTCTGCAGGAAA+AGG | + | chr5_4:11683920-11683939 | None:intergenic | 35.0% | |
| !!! | GGCCAAAAATCACCATTTTT+TGG | + | chr5_4:11684184-11684203 | None:intergenic | 35.0% |
| AAACAAACGCACCCTAAATA+GGG | + | chr5_4:11684229-11684248 | None:intergenic | 35.0% | |
| TAGATTTCGCAAAAGCTACT+TGG | - | chr5_4:11684410-11684429 | Msa0837650:intron | 35.0% | |
| ! | ATCTAAGGGTCCGTTTATTT+TGG | + | chr5_4:11684567-11684586 | None:intergenic | 35.0% |
| GAATCTAAACAACAACAACC+AGG | + | chr5_4:11684757-11684776 | None:intergenic | 35.0% | |
| GACCAAAATTGCAACAGTAT+AGG | - | chr5_4:11684827-11684846 | Msa0837650:intron | 35.0% | |
| AATTGCAACAGTATAGGAAC+GGG | - | chr5_4:11684833-11684852 | Msa0837650:intron | 35.0% | |
| TATTGAAGGATGACGTTTGT+AGG | - | chr5_4:11684883-11684902 | Msa0837650:intron | 35.0% | |
| TCTAGTACTAGAGAAAACCT+CGG | + | chr5_4:11684959-11684978 | None:intergenic | 35.0% | |
| AAAGCTGGAGTAGTCAAATA+CGG | - | chr5_4:11685075-11685094 | Msa0837650:intron | 35.0% | |
| ! | ATGTGCTTTAAGCTATGAAC+AGG | - | chr5_4:11685389-11685408 | Msa0837650:intron | 35.0% |
| TAAGCTATGAACAGGACAAA+TGG | - | chr5_4:11685397-11685416 | Msa0837650:intron | 35.0% | |
| !!! | TTATTTTCATTTTTCGGGGG+TGG | + | chr5_4:11685492-11685511 | None:intergenic | 35.0% |
| ACTAAATGGTCTGTGATTCT+TGG | - | chr5_4:11685661-11685680 | Msa0837650:intron | 35.0% | |
| ! | GCTATAATTTGTGTACCACA+AGG | - | chr5_4:11685845-11685864 | Msa0837650:intron | 35.0% |
| ACAATATCCCCTTAAGATTG+TGG | - | chr5_4:11686038-11686057 | Msa0837650:intron | 35.0% | |
| GCAAATTCACCACAATCTTA+AGG | + | chr5_4:11686050-11686069 | None:intergenic | 35.0% | |
| AATTTGCAACGTCAATCATG+TGG | - | chr5_4:11686063-11686082 | Msa0837650:intron | 35.0% | |
| TGACAATCGAGTCGAATATA+AGG | + | chr5_4:11686145-11686164 | None:intergenic | 35.0% | |
| TACCTCTATATAAGCAGCAA+TGG | + | chr5_4:11686201-11686220 | None:intergenic | 35.0% | |
| TACCTTGATTGCCTCATTAA+TGG | - | chr5_4:11686225-11686244 | Msa0837650:intron | 35.0% | |
| TACCATTAATGAGGCAATCA+AGG | + | chr5_4:11686230-11686249 | None:intergenic | 35.0% | |
| ! | TCATTTGAGATAGGATAGTG+TGG | + | chr5_4:11686335-11686354 | None:intergenic | 35.0% |
| ! | AATGGTCTGTCATTTGAGAT+AGG | + | chr5_4:11686344-11686363 | None:intergenic | 35.0% |
| GGGAGACTGAATAAAACTAT+AGG | + | chr5_4:11686394-11686413 | None:intergenic | 35.0% | |
| ! | AGTCTCCCTCTAGAAAATAT+CGG | - | chr5_4:11686406-11686425 | Msa0837650:CDS | 35.0% |
| AAGAACCAACACGAGAATAA+CGG | - | chr5_4:11686498-11686517 | Msa0837650:intron | 35.0% | |
| AAACAAGCATAGCAAAGATG+GGG | - | chr5_4:11686554-11686573 | Msa0837650:intron | 35.0% | |
| AACATTAGAGAGAGAGAGTT+GGG | - | chr5_4:11686628-11686647 | Msa0837650:intron | 35.0% | |
| ACCTACAGTAGAAATGATAG+TGG | - | chr5_4:11686656-11686675 | Msa0837650:intron | 35.0% | |
| TCCACTATCATTTCTACTGT+AGG | + | chr5_4:11686660-11686679 | None:intergenic | 35.0% | |
| !! | GTAGAAATGATAGTGGAAAC+AGG | - | chr5_4:11686663-11686682 | Msa0837650:intron | 35.0% |
| TCTCCTTATACAGAATCTAC+GGG | + | chr5_4:11686719-11686738 | None:intergenic | 35.0% | |
| CTCTCCTTATACAGAATCTA+CGG | + | chr5_4:11686720-11686739 | None:intergenic | 35.0% | |
| TATAAGGAGAGTAGATCAGA+TGG | - | chr5_4:11686729-11686748 | Msa0837650:CDS | 35.0% | |
| !! | CTAGTTCTAACATGTAACTC+GGG | - | chr5_4:11686990-11687009 | Msa0837650:intron | 35.0% |
| !! | TAGTTCTAACATGTAACTCG+GGG | - | chr5_4:11686991-11687010 | Msa0837650:intron | 35.0% |
| TACCTCAATAGGATCAATAC+CGG | - | chr5_4:11687280-11687299 | Msa0837650:intron | 35.0% | |
| AGTAACTTTATGAGGTTTGG+TGG | + | chr5_4:11687309-11687328 | None:intergenic | 35.0% | |
| GACAGTAACTTTATGAGGTT+TGG | + | chr5_4:11687312-11687331 | None:intergenic | 35.0% | |
| GTCAACAAAACTGAAGCATA+TGG | - | chr5_4:11687329-11687348 | Msa0837650:intron | 35.0% | |
| AACAAAACTGAAGCATATGG+TGG | - | chr5_4:11687332-11687351 | Msa0837650:intron | 35.0% | |
| TACTCTTCGTTACTGAAACT+TGG | - | chr5_4:11687382-11687401 | Msa0837650:intron | 35.0% | |
| GTTACTGAAACTTGGTTTCT+TGG | - | chr5_4:11687390-11687409 | Msa0837650:intron | 35.0% | |
| AAACTTGGTTTCTTGGAACT+TGG | - | chr5_4:11687397-11687416 | Msa0837650:intron | 35.0% | |
| !! | CAGGAAAAGATACTGCTTTT+TGG | + | chr5_4:11687426-11687445 | None:intergenic | 35.0% |
| ! | TCTTTTCCTGCAAACTTTTC+TGG | - | chr5_4:11687436-11687455 | Msa0837650:intron | 35.0% |
| TGTTATGGTTACACTGTTAC+TGG | - | chr5_4:11687501-11687520 | Msa0837650:intron | 35.0% | |
| TAGTGGGAGTGAAATTCTAT+TGG | - | chr5_4:11687636-11687655 | Msa0837650:intron | 35.0% | |
| GACAGGTAAATCATAAGTAC+AGG | - | chr5_4:11687766-11687785 | Msa0837650:intron | 35.0% | |
| !! | TCTGCTTTTGGAGAATCTTT+TGG | + | chr5_4:11687861-11687880 | None:intergenic | 35.0% |
| !! | AGCATTCAAAATGGGCTAAA+AGG | + | chr5_4:11688189-11688208 | None:intergenic | 35.0% |
| !! | CTAGGAGAAAGCATTCAAAA+TGG | + | chr5_4:11688198-11688217 | None:intergenic | 35.0% |
| ! | TTTTGAATGCTTTCTCCTAG+TGG | - | chr5_4:11688198-11688217 | Msa0837650:intron | 35.0% |
| AATTAGGGAAAGTAACCACT+AGG | + | chr5_4:11688216-11688235 | None:intergenic | 35.0% | |
| !! | TAGGAGAAAGCATTCAAGAT+GGG | + | chr5_4:11688346-11688365 | None:intergenic | 35.0% |
| AATTAGGGAAAGTAACCACT+AGG | + | chr5_4:11688216-11688235 | None:intergenic | 35.0% | |
| !!! | CGTCTTTTGTTTTTCGTGGA+AGG | + | chr5_4:11683462-11683481 | None:intergenic | 40.0% |
| TGGGAGAATTTACTTACGTG+CGG | + | chr5_4:11683559-11683578 | None:intergenic | 40.0% | |
| ! | AAAGGGTATAGGTGCGAATT+GGG | + | chr5_4:11683578-11683597 | None:intergenic | 40.0% |
| ! | ATCGGAGAATGAAAGGGTAT+AGG | + | chr5_4:11683589-11683608 | None:intergenic | 40.0% |
| GAATGGATCGGAGAATGAAA+GGG | + | chr5_4:11683595-11683614 | None:intergenic | 40.0% | |
| TGAATGGATCGGAGAATGAA+AGG | + | chr5_4:11683596-11683615 | None:intergenic | 40.0% | |
| AGCTCAGATTATTTGTCTGC+AGG | + | chr5_4:11683926-11683945 | None:intergenic | 40.0% | |
| CAGACAAATAATCTGAGCTG+TGG | - | chr5_4:11683927-11683946 | Msa0837650:CDS | 40.0% | |
| TGGCTATTGAGGTCAATGTT+TGG | - | chr5_4:11684020-11684039 | Msa0837650:CDS | 40.0% | |
| TGCAACAATGTGCGAAATTG+AGG | + | chr5_4:11684122-11684141 | None:intergenic | 40.0% | |
| GAAACAAACGCACCCTAAAT+AGG | + | chr5_4:11684230-11684249 | None:intergenic | 40.0% | |
| TACAAGGAGCTCAAGTGTAA+GGG | + | chr5_4:11684378-11684397 | None:intergenic | 40.0% | |
| ATACAAGGAGCTCAAGTGTA+AGG | + | chr5_4:11684379-11684398 | None:intergenic | 40.0% | |
| CGGACCCTTAGATTCATAAT+TGG | - | chr5_4:11684574-11684593 | Msa0837650:intron | 40.0% | |
| ATTGCAACAGTATAGGAACG+GGG | - | chr5_4:11684834-11684853 | Msa0837650:intron | 40.0% | |
| CTAGTACTAGAGAAAACCTC+GGG | + | chr5_4:11684958-11684977 | None:intergenic | 40.0% | |
| AAGCTGGAGTAGTCAAATAC+GGG | - | chr5_4:11685076-11685095 | Msa0837650:intron | 40.0% | |
| GAAATCTGGGTCTGTAAGAA+TGG | + | chr5_4:11685118-11685137 | None:intergenic | 40.0% | |
| ! | GCAAAATGGTGCTGAAATCT+GGG | + | chr5_4:11685131-11685150 | None:intergenic | 40.0% |
| ATTTGAACGCATGCGCAAAA+TGG | + | chr5_4:11685145-11685164 | None:intergenic | 40.0% | |
| GCGTTCAAATGTAGATCTCA+AGG | - | chr5_4:11685155-11685174 | Msa0837650:intron | 40.0% | |
| AATGGTCTGTGATTCTTGGT+TGG | - | chr5_4:11685665-11685684 | Msa0837650:CDS | 40.0% | |
| ACACGCACAAACTCACATAT+AGG | - | chr5_4:11685956-11685975 | Msa0837650:intron | 40.0% | |
| CTCTATATAAGCAGCAATGG+CGG | + | chr5_4:11686198-11686217 | None:intergenic | 40.0% | |
| ! | GCTGACCGATATTTTCTAGA+GGG | + | chr5_4:11686414-11686433 | None:intergenic | 40.0% |
| TTGTAAACTTGATCGCAAGC+AGG | + | chr5_4:11686436-11686455 | None:intergenic | 40.0% | |
| !! | TCGTGTTGGTTCTTATACAG+AGG | + | chr5_4:11686492-11686511 | None:intergenic | 40.0% |
| ACATTCCGTTATTCTCGTGT+TGG | + | chr5_4:11686506-11686525 | None:intergenic | 40.0% | |
| ! | ACACGAGAATAACGGAATGT+TGG | - | chr5_4:11686506-11686525 | Msa0837650:intron | 40.0% |
| ! | CACGAGAATAACGGAATGTT+GGG | - | chr5_4:11686507-11686526 | Msa0837650:intron | 40.0% |
| GTGGTAAGACTAGACAAGAT+AGG | - | chr5_4:11686593-11686612 | Msa0837650:intron | 40.0% | |
| CAACATTAGAGAGAGAGAGT+TGG | - | chr5_4:11686627-11686646 | Msa0837650:intron | 40.0% | |
| ACATTAGAGAGAGAGAGTTG+GGG | - | chr5_4:11686629-11686648 | Msa0837650:intron | 40.0% | |
| AGACCCGTAGATTCTGTATA+AGG | - | chr5_4:11686713-11686732 | Msa0837650:CDS | 40.0% | |
| ! | TAAGGCTTGATGGTTGTTGT+TGG | - | chr5_4:11686906-11686925 | Msa0837650:five_prime_UTR | 40.0% |
| GTTGGAAATGTTTCTCTCCT+AGG | - | chr5_4:11686924-11686943 | Msa0837650:five_prime_UTR | 40.0% | |
| TGCCTTCCTGTGTTTAAGAA+AGG | - | chr5_4:11687130-11687149 | Msa0837650:intron | 40.0% | |
| AGCCTTTCTTAAACACAGGA+AGG | + | chr5_4:11687135-11687154 | None:intergenic | 40.0% | |
| GCTAAGCCTTTCTTAAACAC+AGG | + | chr5_4:11687139-11687158 | None:intergenic | 40.0% | |
| TAGTCGAACTACGCACATAT+GGG | - | chr5_4:11687604-11687623 | Msa0837650:intron | 40.0% | |
| ATATGGGCATTCTCTGTAGT+GGG | - | chr5_4:11687620-11687639 | Msa0837650:intron | 40.0% | |
| GTCATTAGGTATGTCAGACT+AGG | + | chr5_4:11687749-11687768 | None:intergenic | 40.0% | |
| AGTCTGACATACCTAATGAC+AGG | - | chr5_4:11687749-11687768 | Msa0837650:intron | 40.0% | |
| !!! | GGAAGAGCATCTTCTTTTCT+CGG | + | chr5_4:11687817-11687836 | None:intergenic | 40.0% |
| ! | GCATCAGTTTTCTCTGCTTT+TGG | + | chr5_4:11687873-11687892 | None:intergenic | 40.0% |
| !! | AGCATTCAAGATGGGCTAAA+AGG | + | chr5_4:11688338-11688357 | None:intergenic | 40.0% |
| !! | CTAGGAGAAAGCATTCAAGA+TGG | + | chr5_4:11688347-11688366 | None:intergenic | 40.0% |
| TCTTGAATGCTTTCTCCTAG+TGG | - | chr5_4:11688347-11688366 | Msa0837650:five_prime_UTR | 40.0% | |
| GGGAGAATTTACTTACGTGC+GGG | + | chr5_4:11683558-11683577 | None:intergenic | 45.0% | |
| ! | GAAAGGGTATAGGTGCGAAT+TGG | + | chr5_4:11683579-11683598 | None:intergenic | 45.0% |
| ATAATCTGAGCTGTGGTTGC+TGG | - | chr5_4:11683934-11683953 | Msa0837650:CDS | 45.0% | |
| !! | ACTAAGTGGGATTGGCTACA+TGG | + | chr5_4:11684725-11684744 | None:intergenic | 45.0% |
| ATGTAGCCAATCCCACTTAG+TGG | - | chr5_4:11684724-11684743 | Msa0837650:intron | 45.0% | |
| TGTAGCCAATCCCACTTAGT+GGG | - | chr5_4:11684725-11684744 | Msa0837650:intron | 45.0% | |
| CTTATCCCACTAAGTGGGAT+TGG | + | chr5_4:11684733-11684752 | None:intergenic | 45.0% | |
| CAGGACTTATCCCACTAAGT+GGG | + | chr5_4:11684738-11684757 | None:intergenic | 45.0% | |
| ATACTGTCATAAGAAGGCCG+TGG | - | chr5_4:11684994-11685013 | Msa0837650:intron | 45.0% | |
| TCTGCAGTCCATTTCTGCTT+AGG | + | chr5_4:11685039-11685058 | None:intergenic | 45.0% | |
| !! | GAAATGGACTGCAGAAGAAG+AGG | - | chr5_4:11685044-11685063 | Msa0837650:intron | 45.0% |
| AGCTGGAGTAGTCAAATACG+GGG | - | chr5_4:11685077-11685096 | Msa0837650:intron | 45.0% | |
| TCAAATACGGGGCTGGAAAA+TGG | - | chr5_4:11685088-11685107 | Msa0837650:intron | 45.0% | |
| ! | CGCAAAATGGTGCTGAAATC+TGG | + | chr5_4:11685132-11685151 | None:intergenic | 45.0% |
| ! | GGTTTGAGATGCTACTGCTA+CGG | - | chr5_4:11685245-11685264 | Msa0837650:intron | 45.0% |
| GCTATGAACAGGACAAATGG+AGG | - | chr5_4:11685400-11685419 | Msa0837650:intron | 45.0% | |
| !!! | TTTCATTTTTCGGGGGTGGT+AGG | + | chr5_4:11685488-11685507 | None:intergenic | 45.0% |
| ATATTGAACTATGGCGGTCG+AGG | + | chr5_4:11685526-11685545 | None:intergenic | 45.0% | |
| CCAGAAACTGAAAGAGGCTT+AGG | + | chr5_4:11685567-11685586 | None:intergenic | 45.0% | |
| CCTAAGCCTCTTTCAGTTTC+TGG | - | chr5_4:11685564-11685583 | Msa0837650:intron | 45.0% | |
| ! | AAGCCTCTTTCAGTTTCTGG+TGG | - | chr5_4:11685567-11685586 | Msa0837650:intron | 45.0% |
| GTTCCACCAGAAACTGAAAG+AGG | + | chr5_4:11685573-11685592 | None:intergenic | 45.0% | |
| !! | CGACTCGATTGTCAAGTTGA+AGG | - | chr5_4:11686151-11686170 | Msa0837650:intron | 45.0% |
| !! | TGTCAAGTTGAAGGAGCCAA+AGG | - | chr5_4:11686160-11686179 | Msa0837650:intron | 45.0% |
| !! | GTCAAGTTGAAGGAGCCAAA+GGG | - | chr5_4:11686161-11686180 | Msa0837650:intron | 45.0% |
| ! | CGCCATTGCTGCTTATATAG+AGG | - | chr5_4:11686196-11686215 | Msa0837650:intron | 45.0% |
| GTAACTGATCTCACTGAGTG+AGG | + | chr5_4:11686297-11686316 | None:intergenic | 45.0% | |
| ! | GGCTGACCGATATTTTCTAG+AGG | + | chr5_4:11686415-11686434 | None:intergenic | 45.0% |
| ! | GAGAATAACGGAATGTTGGG+CGG | - | chr5_4:11686510-11686529 | Msa0837650:intron | 45.0% |
| AAGGAGAGTAGATCAGATGG+AGG | - | chr5_4:11686732-11686751 | Msa0837650:CDS | 45.0% | |
| GAGGATAGTCAGATCACTAG+AGG | - | chr5_4:11686751-11686770 | Msa0837650:CDS | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr5_4:11686894-11686913 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr5_4:11686895-11686914 | None:intergenic | 45.0% |
| ! | TCAAGCCTTATCCCACTAAG+TGG | + | chr5_4:11686896-11686915 | None:intergenic | 45.0% |
| CTTAGTGGGATAAGGCTTGA+TGG | - | chr5_4:11686896-11686915 | Msa0837650:five_prime_UTR | 45.0% | |
| ! | GAGCTTAGGGGAACTTGTTT+AGG | + | chr5_4:11687080-11687099 | None:intergenic | 45.0% |
| ! | GTTAAGAGCTTGTTCTTGCC+AGG | + | chr5_4:11687106-11687125 | None:intergenic | 45.0% |
| !! | GACCGGTATTGATCCTATTG+AGG | + | chr5_4:11687285-11687304 | None:intergenic | 45.0% |
| !! | TTATGAGGTTTGGTGGAGAC+CGG | + | chr5_4:11687302-11687321 | None:intergenic | 45.0% |
| !! | CTGCAAACTTTTCTGGCGAA+GGG | - | chr5_4:11687443-11687462 | Msa0837650:intron | 45.0% |
| GTAGTCGAACTACGCACATA+TGG | - | chr5_4:11687603-11687622 | Msa0837650:intron | 45.0% | |
| CATATGGGCATTCTCTGTAG+TGG | - | chr5_4:11687619-11687638 | Msa0837650:intron | 45.0% | |
| ATGCTCTTCCTTGTTACTCC+TGG | - | chr5_4:11687827-11687846 | Msa0837650:intron | 45.0% | |
| TCTTCCTTGTTACTCCTGGA+AGG | - | chr5_4:11687831-11687850 | Msa0837650:intron | 45.0% | |
| CTTCCTTGTTACTCCTGGAA+GGG | - | chr5_4:11687832-11687851 | Msa0837650:intron | 45.0% | |
| GTTTGCAAAAGCAGCAACGA+AGG | - | chr5_4:11688073-11688092 | Msa0837650:intron | 45.0% | |
| CCAGGACTTATCCCACTAAG+TGG | + | chr5_4:11684739-11684758 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGTCC+TGG | - | chr5_4:11684736-11684755 | Msa0837650:intron | 50.0% | |
| CACCCATTGGAAGAAGTCCA+CGG | + | chr5_4:11685014-11685033 | None:intergenic | 50.0% | |
| !! | TTCTGCTTAGGAGCACCCAT+TGG | + | chr5_4:11685027-11685046 | None:intergenic | 50.0% |
| TGGGTGCTCCTAAGCAGAAA+TGG | - | chr5_4:11685028-11685047 | Msa0837650:intron | 50.0% | |
| TGACTGCAATATGGGGATCC+AGG | - | chr5_4:11685433-11685452 | Msa0837650:intron | 50.0% | |
| AATATGGGGATCCAGGCAGA+AGG | - | chr5_4:11685440-11685459 | Msa0837650:intron | 50.0% | |
| ! | TGCAAGTTTTGCCTTCTGCC+TGG | + | chr5_4:11685454-11685473 | None:intergenic | 50.0% |
| CAAAGATGGGGATGTTGCGT+TGG | - | chr5_4:11686566-11686585 | Msa0837650:intron | 50.0% | |
| !! | ATGATAGTGGAAACAGGCGC+AGG | - | chr5_4:11686669-11686688 | Msa0837650:intron | 50.0% |
| AGTCAGATCACTAGAGGCAG+AGG | - | chr5_4:11686757-11686776 | Msa0837650:CDS | 50.0% | |
| ACTAAGTGGGGTCTGCTACA+TGG | + | chr5_4:11686882-11686901 | None:intergenic | 50.0% | |
| ATGTAGCAGACCCCACTTAG+TGG | - | chr5_4:11686881-11686900 | Msa0837650:five_prime_UTR | 50.0% | |
| TGTAGCAGACCCCACTTAGT+GGG | - | chr5_4:11686882-11686901 | Msa0837650:five_prime_UTR | 50.0% | |
| AGACCCCACTTAGTGGGATA+AGG | - | chr5_4:11686888-11686907 | Msa0837650:five_prime_UTR | 50.0% | |
| TCTTGCCAGGTGAGAGCTTA+GGG | + | chr5_4:11687093-11687112 | None:intergenic | 50.0% | |
| TTCTTGCCAGGTGAGAGCTT+AGG | + | chr5_4:11687094-11687113 | None:intergenic | 50.0% | |
| CTGAAGCATATGGTGGCAAG+CGG | - | chr5_4:11687339-11687358 | Msa0837650:intron | 50.0% | |
| GGCAAGCGGCAAATTAGTGA+AGG | - | chr5_4:11687353-11687372 | Msa0837650:intron | 50.0% | |
| CCTTCGCCAGAAAAGTTTGC+AGG | + | chr5_4:11687445-11687464 | None:intergenic | 50.0% | |
| !! | CCTGCAAACTTTTCTGGCGA+AGG | - | chr5_4:11687442-11687461 | Msa0837650:intron | 50.0% |
| ! | AATCTTTTGGCCTCCCTTCC+AGG | + | chr5_4:11687848-11687867 | None:intergenic | 50.0% |
| AGCAGCTGCAAAAGCAGTTG+CGG | - | chr5_4:11687968-11687987 | Msa0837650:intron | 50.0% | |
| AACAGCTGAAGCTGAAGCAG+AGG | - | chr5_4:11688040-11688059 | Msa0837650:intron | 50.0% | |
| CAGAAGAAGACTGCATCCCG+AGG | - | chr5_4:11684939-11684958 | Msa0837650:intron | 55.0% | |
| AGGCCGTGGACTTCTTCCAA+TGG | - | chr5_4:11685008-11685027 | Msa0837650:intron | 55.0% | |
| GGCCGTGGACTTCTTCCAAT+GGG | - | chr5_4:11685009-11685028 | Msa0837650:intron | 55.0% | |
| !! | GAAGAGGCAGCTCTGAAAGC+TGG | - | chr5_4:11685060-11685079 | Msa0837650:intron | 55.0% |
| GGAGTAGTCAAATACGGGGC+TGG | - | chr5_4:11685081-11685100 | Msa0837650:intron | 55.0% | |
| GAACTATGGCGGTCGAGGTT+GGG | + | chr5_4:11685521-11685540 | None:intergenic | 55.0% | |
| TGAACTATGGCGGTCGAGGT+TGG | + | chr5_4:11685522-11685541 | None:intergenic | 55.0% | |
| GGCTTAGGAGCTGCAACTTC+TGG | + | chr5_4:11685552-11685571 | None:intergenic | 55.0% | |
| GCGGCAATGTCAGAACCCTT+TGG | + | chr5_4:11686179-11686198 | None:intergenic | 55.0% | |
| GGGATGTTGCGTTGGATGTG+TGG | - | chr5_4:11686574-11686593 | Msa0837650:intron | 55.0% | |
| ! | ATAGTGGAAACAGGCGCAGG+TGG | - | chr5_4:11686672-11686691 | Msa0837650:intron | 55.0% |
| CTCGGGGACTTCCATTCTTC+TGG | - | chr5_4:11687007-11687026 | Msa0837650:intron | 55.0% | |
| AGTTCCCCTAAGCTCTCACC+TGG | - | chr5_4:11687085-11687104 | Msa0837650:intron | 55.0% | |
| CTTGCCAGGTGAGAGCTTAG+GGG | + | chr5_4:11687092-11687111 | None:intergenic | 55.0% | |
| CCTCCCTTCCAGGAGTAACA+AGG | + | chr5_4:11687838-11687857 | None:intergenic | 55.0% | |
| CCTTGTTACTCCTGGAAGGG+AGG | - | chr5_4:11687835-11687854 | Msa0837650:intron | 55.0% | |
| AGCTGCAAAAGCAGTTGCGG+AGG | - | chr5_4:11687971-11687990 | Msa0837650:intron | 55.0% | |
| TGCTGTCTCAGCCTCAGCAA+TGG | + | chr5_4:11688006-11688025 | None:intergenic | 55.0% | |
| TGAGGCTGAGACAGCAGCAA+GGG | - | chr5_4:11688010-11688029 | Msa0837650:intron | 55.0% | |
| ! | GAGGGGTGTGACAGCTCAAG+AGG | - | chr5_4:11687938-11687957 | Msa0837650:intron | 60.0% |
| GGCAGAAGCTGCCATTGCTG+AGG | - | chr5_4:11687992-11688011 | Msa0837650:intron | 60.0% | |
| CTGAGGCTGAGACAGCAGCA+AGG | - | chr5_4:11688009-11688028 | Msa0837650:intron | 60.0% | |
| CTATGGCGGTCGAGGTTGGG+TGG | + | chr5_4:11685518-11685537 | None:intergenic | 65.0% | |
| GGCTGAGACAGCAGCAAGGG+AGG | - | chr5_4:11688013-11688032 | Msa0837650:intron | 65.0% | |
| TGGCGGTCGAGGTTGGGTGG+TGG | + | chr5_4:11685515-11685534 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 11683430 | 11688452 | 11683430 | ID=Msa0837650;Name=Msa0837650 |
| chr5_4 | mRNA | 11683430 | 11688452 | 11683430 | ID=Msa0837650-mRNA-1;Parent=Msa0837650;Name=Msa0837650-mRNA-1;_AED=0.17;_eAED=0.17;_QI=442|0.85|0.87|1|0.57|0.37|8|176|302 |
| chr5_4 | exon | 11683430 | 11683513 | 11683430 | ID=Msa0837650-mRNA-1:exon:5102;Parent=Msa0837650-mRNA-1 |
| chr5_4 | exon | 11683663 | 11684111 | 11683663 | ID=Msa0837650-mRNA-1:exon:5101;Parent=Msa0837650-mRNA-1 |
| chr5_4 | exon | 11684508 | 11684591 | 11684508 | ID=Msa0837650-mRNA-1:exon:5100;Parent=Msa0837650-mRNA-1 |
| chr5_4 | exon | 11685665 | 11685773 | 11685665 | ID=Msa0837650-mRNA-1:exon:5099;Parent=Msa0837650-mRNA-1 |
| chr5_4 | exon | 11686263 | 11686471 | 11686263 | ID=Msa0837650-mRNA-1:exon:5098;Parent=Msa0837650-mRNA-1 |
| chr5_4 | exon | 11686706 | 11686977 | 11686706 | ID=Msa0837650-mRNA-1:exon:5097;Parent=Msa0837650-mRNA-1 |
| chr5_4 | exon | 11687841 | 11687952 | 11687841 | ID=Msa0837650-mRNA-1:exon:5096;Parent=Msa0837650-mRNA-1 |
| chr5_4 | exon | 11688245 | 11688452 | 11688245 | ID=Msa0837650-mRNA-1:exon:5095;Parent=Msa0837650-mRNA-1 |
| chr5_4 | five_prime_UTR | 11688245 | 11688452 | 11688245 | ID=Msa0837650-mRNA-1:five_prime_utr;Parent=Msa0837650-mRNA-1 |
| chr5_4 | five_prime_UTR | 11687841 | 11687952 | 11687841 | ID=Msa0837650-mRNA-1:five_prime_utr;Parent=Msa0837650-mRNA-1 |
| chr5_4 | five_prime_UTR | 11686856 | 11686977 | 11686856 | ID=Msa0837650-mRNA-1:five_prime_utr;Parent=Msa0837650-mRNA-1 |
| chr5_4 | CDS | 11686706 | 11686855 | 11686706 | ID=Msa0837650-mRNA-1:cds;Parent=Msa0837650-mRNA-1 |
| chr5_4 | CDS | 11686263 | 11686471 | 11686263 | ID=Msa0837650-mRNA-1:cds;Parent=Msa0837650-mRNA-1 |
| chr5_4 | CDS | 11685665 | 11685773 | 11685665 | ID=Msa0837650-mRNA-1:cds;Parent=Msa0837650-mRNA-1 |
| chr5_4 | CDS | 11684508 | 11684591 | 11684508 | ID=Msa0837650-mRNA-1:cds;Parent=Msa0837650-mRNA-1 |
| chr5_4 | CDS | 11683755 | 11684111 | 11683755 | ID=Msa0837650-mRNA-1:cds;Parent=Msa0837650-mRNA-1 |
| chr5_4 | three_prime_UTR | 11683663 | 11683754 | 11683663 | ID=Msa0837650-mRNA-1:three_prime_utr;Parent=Msa0837650-mRNA-1 |
| chr5_4 | three_prime_UTR | 11683430 | 11683513 | 11683430 | ID=Msa0837650-mRNA-1:three_prime_utr;Parent=Msa0837650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
