Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162830 | XP_003625273.1 | 84.840 | 343 | 44 | 3 | 1 | 340 | 1 | 338 | 0.0 | 549 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162830 | G7KVE9 | 84.840 | 343 | 44 | 3 | 1 | 340 | 1 | 338 | 0.0 | 549 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008220 | Msa1162830 | 0.809714 | 1.650599e-50 | -8.615850e-47 |
| Msa0015680 | Msa1162830 | 0.825376 | 4.849278e-54 | -8.615850e-47 |
| Msa0027390 | Msa1162830 | 0.811382 | 7.199831e-51 | -8.615850e-47 |
| Msa0031820 | Msa1162830 | 0.815541 | 8.767327e-52 | -8.615850e-47 |
| Msa0037160 | Msa1162830 | 0.802532 | 5.366044e-49 | -8.615850e-47 |
| Msa0057370 | Msa1162830 | 0.813537 | 2.434099e-51 | -8.615850e-47 |
| Msa0099510 | Msa1162830 | 0.815391 | 9.469564e-52 | -8.615850e-47 |
| Msa0101880 | Msa1162830 | 0.801623 | 8.250167e-49 | -8.615850e-47 |
| Msa0108390 | Msa1162830 | 0.812206 | 4.764470e-51 | -8.615850e-47 |
| Msa0108870 | Msa1162830 | 0.802785 | 4.758488e-49 | -8.615850e-47 |
| Msa0603670 | Msa1162830 | 0.829663 | 4.538508e-55 | -8.615850e-47 |
| Msa0610500 | Msa1162830 | 0.822815 | 1.935907e-53 | -8.615850e-47 |
| Msa0619180 | Msa1162830 | 0.808616 | 2.838010e-50 | -8.615850e-47 |
| Msa0619920 | Msa1162830 | 0.828871 | 7.063415e-55 | -8.615850e-47 |
| Msa0626680 | Msa1162830 | 0.816431 | 5.549922e-52 | -8.615850e-47 |
| Msa0643250 | Msa1162830 | 0.807210 | 5.650141e-50 | -8.615850e-47 |
| Msa0646130 | Msa1162830 | 0.836686 | 8.089092e-57 | -8.615850e-47 |
| Msa0648520 | Msa1162830 | 0.813725 | 2.213268e-51 | -8.615850e-47 |
| Msa0651150 | Msa1162830 | 0.832533 | 8.952816e-56 | -8.615850e-47 |
| Msa0682090 | Msa1162830 | 0.823359 | 1.445258e-53 | -8.615850e-47 |
| Msa0682140 | Msa1162830 | 0.822421 | 2.391032e-53 | -8.615850e-47 |
| Msa0691050 | Msa1162830 | 0.801376 | 9.269663e-49 | -8.615850e-47 |
| Msa0693380 | Msa1162830 | 0.802596 | 5.205739e-49 | -8.615850e-47 |
| Msa0706390 | Msa1162830 | 0.825534 | 4.447266e-54 | -8.615850e-47 |
| Msa0715410 | Msa1162830 | 0.802964 | 4.369260e-49 | -8.615850e-47 |
| Msa0716970 | Msa1162830 | 0.803651 | 3.148366e-49 | -8.615850e-47 |
| Msa0743680 | Msa1162830 | 0.812384 | 4.355290e-51 | -8.615850e-47 |
| Msa0744090 | Msa1162830 | 0.802548 | 5.325129e-49 | -8.615850e-47 |
| Msa0752160 | Msa1162830 | 0.805425 | 1.343139e-49 | -8.615850e-47 |
| Msa0753770 | Msa1162830 | 0.831446 | 1.661371e-55 | -8.615850e-47 |
| Msa0756530 | Msa1162830 | 0.804146 | 2.484828e-49 | -8.615850e-47 |
| Msa0756930 | Msa1162830 | 0.808643 | 2.799590e-50 | -8.615850e-47 |
| Msa0784620 | Msa1162830 | 0.809988 | 1.441370e-50 | -8.615850e-47 |
| Msa0793140 | Msa1162830 | -0.800012 | 1.759467e-48 | -8.615850e-47 |
| Msa0795660 | Msa1162830 | 0.812968 | 3.246239e-51 | -8.615850e-47 |
| Msa0814250 | Msa1162830 | 0.813746 | 2.189469e-51 | -8.615850e-47 |
| Msa0821800 | Msa1162830 | 0.800487 | 1.408452e-48 | -8.615850e-47 |
| Msa0824730 | Msa1162830 | 0.814614 | 1.408272e-51 | -8.615850e-47 |
| Msa0825280 | Msa1162830 | 0.808068 | 3.714169e-50 | -8.615850e-47 |
| Msa0837650 | Msa1162830 | 0.830697 | 2.538426e-55 | -8.615850e-47 |
| Msa0126770 | Msa1162830 | 0.831430 | 1.677067e-55 | -8.615850e-47 |
| Msa0135420 | Msa1162830 | 0.803275 | 3.767942e-49 | -8.615850e-47 |
| Msa0160670 | Msa1162830 | 0.803000 | 4.295423e-49 | -8.615850e-47 |
| Msa0165300 | Msa1162830 | 0.824542 | 7.629903e-54 | -8.615850e-47 |
| Msa0171850 | Msa1162830 | 0.837931 | 3.884281e-57 | -8.615850e-47 |
| Msa0177210 | Msa1162830 | 0.814372 | 1.592901e-51 | -8.615850e-47 |
| Msa0177700 | Msa1162830 | -0.812212 | 4.749417e-51 | -8.615850e-47 |
| Msa0185510 | Msa1162830 | 0.815565 | 8.660413e-52 | -8.615850e-47 |
| Msa0196340 | Msa1162830 | 0.820882 | 5.422163e-53 | -8.615850e-47 |
| Msa0198520 | Msa1162830 | 0.828926 | 6.852419e-55 | -8.615850e-47 |
| Msa0198530 | Msa1162830 | 0.811415 | 7.081382e-51 | -8.615850e-47 |
| Msa0208810 | Msa1162830 | 0.827929 | 1.192322e-54 | -8.615850e-47 |
| Msa0215360 | Msa1162830 | 0.820176 | 7.877213e-53 | -8.615850e-47 |
| Msa0224190 | Msa1162830 | 0.801232 | 9.920047e-49 | -8.615850e-47 |
| Msa0227400 | Msa1162830 | 0.811328 | 7.397283e-51 | -8.615850e-47 |
| Msa0238230 | Msa1162830 | 0.821499 | 3.909578e-53 | -8.615850e-47 |
| Msa0392200 | Msa1162830 | 0.817554 | 3.104362e-52 | -8.615850e-47 |
| Msa0403660 | Msa1162830 | 0.801127 | 1.042579e-48 | -8.615850e-47 |
| Msa0433750 | Msa1162830 | 0.801244 | 9.866030e-49 | -8.615850e-47 |
| Msa0437400 | Msa1162830 | 0.812227 | 4.713482e-51 | -8.615850e-47 |
| Msa0437510 | Msa1162830 | 0.802094 | 6.603198e-49 | -8.615850e-47 |
| Msa0439890 | Msa1162830 | 0.803422 | 3.512602e-49 | -8.615850e-47 |
| Msa0444080 | Msa1162830 | 0.818931 | 1.514657e-52 | -8.615850e-47 |
| Msa0465920 | Msa1162830 | 0.803501 | 3.382034e-49 | -8.615850e-47 |
| Msa0465960 | Msa1162830 | 0.805109 | 1.564774e-49 | -8.615850e-47 |
| Msa1021510 | Msa1162830 | 0.816751 | 4.706056e-52 | -8.615850e-47 |
| Msa1029970 | Msa1162830 | 0.802286 | 6.029925e-49 | -8.615850e-47 |
| Msa1031820 | Msa1162830 | 0.801366 | 9.312815e-49 | -8.615850e-47 |
| Msa1038080 | Msa1162830 | 0.808465 | 3.056930e-50 | -8.615850e-47 |
| Msa1041520 | Msa1162830 | 0.807504 | 4.894406e-50 | -8.615850e-47 |
| Msa1056460 | Msa1162830 | 0.821748 | 3.423817e-53 | -8.615850e-47 |
| Msa1105500 | Msa1162830 | 0.812070 | 5.101360e-51 | -8.615850e-47 |
| Msa0245850 | Msa1162830 | 0.806113 | 9.629827e-50 | -8.615850e-47 |
| Msa0259270 | Msa1162830 | 0.821203 | 4.573243e-53 | -8.615850e-47 |
| Msa0270170 | Msa1162830 | -0.804469 | 2.128411e-49 | -8.615850e-47 |
| Msa0288730 | Msa1162830 | 0.802607 | 5.177511e-49 | -8.615850e-47 |
| Msa0346990 | Msa1162830 | 0.806195 | 9.255818e-50 | -8.615850e-47 |
| Msa0349700 | Msa1162830 | 0.814560 | 1.447550e-51 | -8.615850e-47 |
| Msa1118940 | Msa1162830 | 0.809152 | 2.178802e-50 | -8.615850e-47 |
| Msa1129690 | Msa1162830 | 0.809976 | 1.449947e-50 | -8.615850e-47 |
| Msa1158660 | Msa1162830 | 0.818446 | 1.951719e-52 | -8.615850e-47 |
| Msa1162830 | Msa1163540 | 0.815052 | 1.126522e-51 | -8.615850e-47 |
| Msa1162830 | Msa1181170 | -0.819881 | 9.200857e-53 | -8.615850e-47 |
| Msa1162830 | Msa1223330 | 0.821299 | 4.346064e-53 | -8.615850e-47 |
| Msa1162830 | Msa1280620 | 0.829307 | 5.538834e-55 | -8.615850e-47 |
| Msa1162830 | Msa1286550 | 0.821731 | 3.453808e-53 | -8.615850e-47 |
| Msa1162830 | Msa1294960 | 0.814719 | 1.334987e-51 | -8.615850e-47 |
| Msa1162830 | Msa1296300 | 0.806547 | 7.800891e-50 | -8.615850e-47 |
| Msa1162830 | Msa1329670 | 0.801181 | 1.016379e-48 | -8.615850e-47 |
| Msa1162830 | Msa1333970 | 0.800574 | 1.352155e-48 | -8.615850e-47 |
| Msa1162830 | Msa1340040 | -0.800420 | 1.453261e-48 | -8.615850e-47 |
| Msa1162830 | Msa1340260 | 0.818084 | 2.357063e-52 | -8.615850e-47 |
| Msa1162830 | Msa1346750 | 0.811179 | 7.967621e-51 | -8.615850e-47 |
| Msa1162830 | Msa1370620 | 0.812619 | 3.870376e-51 | -8.615850e-47 |
| Msa1162830 | Msa1375680 | 0.803777 | 2.964439e-49 | -8.615850e-47 |
| Msa1162830 | Msa1402270 | 0.811580 | 6.520823e-51 | -8.615850e-47 |
| Msa1162830 | Msa1403530 | -0.803380 | 3.582960e-49 | -8.615850e-47 |
| Msa1162830 | Msa1415940 | 0.822866 | 1.883024e-53 | -8.615850e-47 |
| Msa1162830 | Msa1435400 | 0.819293 | 1.253381e-52 | -8.615850e-47 |
| Msa1162830 | Msa1439700 | 0.805747 | 1.149509e-49 | -8.615850e-47 |
| Msa1162830 | Msa1446780 | 0.802422 | 5.653183e-49 | -8.615850e-47 |
| Msa1162830 | Msa1449910 | 0.812590 | 3.928236e-51 | -8.615850e-47 |
| Msa1162830 | Msa1464290 | 0.824255 | 8.913996e-54 | -8.615850e-47 |
| Msa0512870 | Msa1162830 | 0.801123 | 1.044324e-48 | -8.615850e-47 |
| Msa0514610 | Msa1162830 | 0.806047 | 9.942376e-50 | -8.615850e-47 |
| Msa0517490 | Msa1162830 | 0.802966 | 4.364617e-49 | -8.615850e-47 |
| Msa0527910 | Msa1162830 | 0.813283 | 2.768600e-51 | -8.615850e-47 |
| Msa0536790 | Msa1162830 | 0.809562 | 1.779865e-50 | -8.615850e-47 |
| Msa0545060 | Msa1162830 | 0.816515 | 5.314488e-52 | -8.615850e-47 |
| Msa0546570 | Msa1162830 | 0.823137 | 1.628223e-53 | -8.615850e-47 |
| Msa0549590 | Msa1162830 | 0.840848 | 6.788975e-58 | -8.615850e-47 |
| Msa0550570 | Msa1162830 | 0.802059 | 6.712892e-49 | -8.615850e-47 |
| Msa0578090 | Msa1162830 | 0.802533 | 5.363149e-49 | -8.615850e-47 |
| Msa0586850 | Msa1162830 | 0.810902 | 9.147275e-51 | -8.615850e-47 |
| Msa0597000 | Msa1162830 | 0.811589 | 6.490059e-51 | -8.615850e-47 |
| Msa0600410 | Msa1162830 | -0.800540 | 1.373915e-48 | -8.615850e-47 |
| Msa0861830 | Msa1162830 | 0.818516 | 1.882406e-52 | -8.615850e-47 |
| Msa0863800 | Msa1162830 | 0.818606 | 1.795225e-52 | -8.615850e-47 |
| Msa0881580 | Msa1162830 | 0.820294 | 7.400587e-53 | -8.615850e-47 |
| Msa0895310 | Msa1162830 | 0.816297 | 5.945925e-52 | -8.615850e-47 |
| Msa0909010 | Msa1162830 | 0.807919 | 3.994785e-50 | -8.615850e-47 |
| Msa0914260 | Msa1162830 | 0.801322 | 9.512250e-49 | -8.615850e-47 |
| Msa0922030 | Msa1162830 | 0.802172 | 6.363494e-49 | -8.615850e-47 |
| Msa0947530 | Msa1162830 | -0.849598 | 2.917650e-60 | -8.615850e-47 |
| Msa0970320 | Msa1162830 | 0.807841 | 4.150519e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162830 | MtrunA17_Chr7g0258791 | 84.840 | 343 | 44 | 3 | 1 | 340 | 1 | 338 | 0.0 | 549 |
| Msa1162830 | MtrunA17_Chr7g0258801 | 85.217 | 345 | 43 | 4 | 1 | 340 | 1 | 342 | 0.0 | 509 |
| Msa1162830 | MtrunA17_Chr1g0175521 | 49.714 | 350 | 131 | 14 | 1 | 340 | 1 | 315 | 8.89e-79 | 243 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162830 | AT2G42040.1 | 51.667 | 120 | 18 | 2 | 210 | 329 | 163 | 242 | 4.93e-22 | 94.4 |
Find 88 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGAAAAGAAAACCATTTA+TGG | 0.110417 | 7_4:-53608415 | Msa1162830:CDS |
| TTTAAGAATTTCTATTATTT+TGG | 0.160442 | 7_4:-53608183 | Msa1162830:three_prime_UTR |
| CTTAAGCTTGTGCTTTATTT+TGG | 0.161665 | 7_4:-53608116 | Msa1162830:three_prime_UTR |
| CCGATCTATGAGCAGCTTAT+TGG | 0.190529 | 7_4:-53608308 | Msa1162830:CDS |
| CTTATCATCATTCCCATAAA+TGG | 0.191015 | 7_4:+53608402 | None:intergenic |
| TCACTTTGTGAGCATCATTT+AGG | 0.197238 | 7_4:-53608562 | Msa1162830:CDS |
| ATTATCATTACATGTATTTC+AGG | 0.207427 | 7_4:-53608221 | Msa1162830:three_prime_UTR |
| TCATCTAGTGGTCTACTATA+TGG | 0.258383 | 7_4:+53610165 | None:intergenic |
| TAAAGAAGAAGGTGACAAAA+AGG | 0.274515 | 7_4:-53608669 | Msa1162830:CDS |
| CACTTTGTGAGCATCATTTA+GGG | 0.276622 | 7_4:-53608561 | Msa1162830:CDS |
| AGACTTTGTTTAGAAGATAA+AGG | 0.315376 | 7_4:+53610075 | None:intergenic |
| TTGCAGGATGAGAAAGTTAG+AGG | 0.316905 | 7_4:-53609443 | Msa1162830:intron |
| TTAGAAGATAAAGGATCTTT+TGG | 0.323095 | 7_4:+53610084 | None:intergenic |
| TCAAGGTGCAGTCGTGTTAA+TGG | 0.325264 | 7_4:-53608625 | Msa1162830:CDS |
| AATTAGTACTTAGAGGTCTT+AGG | 0.338263 | 7_4:+53608060 | None:intergenic |
| CGATCTATGAGCAGCTTATT+GGG | 0.339222 | 7_4:-53608307 | Msa1162830:CDS |
| GTTAGAAATAGATCTAATAT+TGG | 0.340191 | 7_4:-53608511 | Msa1162830:CDS |
| TTGAAAAGAAAACCATTTAT+GGG | 0.365020 | 7_4:-53608414 | Msa1162830:CDS |
| GATGAATAAGAAGTGTTCTC+TGG | 0.367764 | 7_4:-53608734 | Msa1162830:CDS |
| GAGAGTGAATCTCGTGAGTT+TGG | 0.367790 | 7_4:-53610038 | Msa1162830:five_prime_UTR |
| AGAACACTTCTTATTCATCT+TGG | 0.397343 | 7_4:+53608738 | None:intergenic |
| GCTCAACAAGCTAGATCCTT+TGG | 0.399719 | 7_4:-53609705 | Msa1162830:intron |
| CAATAGTAATTAGTACTTAG+AGG | 0.402413 | 7_4:+53608053 | None:intergenic |
| ATAACAAAAGTAATCATATC+AGG | 0.406726 | 7_4:-53609400 | Msa1162830:intron |
| GATTGTGAAGAACAAGGTTT+TGG | 0.415228 | 7_4:+53609860 | None:intergenic |
| CAAGCTTAAGTTGAATATAT+AGG | 0.425658 | 7_4:+53608129 | None:intergenic |
| AACGGCTATGATTATCCATC+TGG | 0.442160 | 7_4:-53609755 | Msa1162830:CDS |
| CATCTAGTGGTCTACTATAT+GGG | 0.445587 | 7_4:+53610166 | None:intergenic |
| TGTTGTCAACAAACACTTGT+TGG | 0.452218 | 7_4:-53608589 | Msa1162830:CDS |
| ACTTAGCAATGGAGACATCT+TGG | 0.459465 | 7_4:-53609009 | Msa1162830:intron |
| ATCAAACACTCCCACTGATC+GGG | 0.459647 | 7_4:-53609787 | Msa1162830:CDS |
| TGTTTCAGCTGGTTTGAGCT+TGG | 0.461697 | 7_4:-53609828 | Msa1162830:CDS |
| AAGGTTCGAGAGTAATGGTA+TGG | 0.464503 | 7_4:-53608800 | Msa1162830:CDS |
| AGAAAAGAACTTGTCTCTTA+CGG | 0.470316 | 7_4:+53609969 | None:intergenic |
| ATGAATAAGAAGTGTTCTCT+GGG | 0.474459 | 7_4:-53608733 | Msa1162830:CDS |
| CAATAAGCTGCTCATAGATC+GGG | 0.475860 | 7_4:+53608309 | None:intergenic |
| CCAATAAGCTGCTCATAGAT+CGG | 0.476576 | 7_4:+53608308 | None:intergenic |
| TTATGGGAATGATGATAAGT+TGG | 0.486486 | 7_4:-53608398 | Msa1162830:CDS |
| AGAGGAGAAGAGAAAGAGAG+TGG | 0.488117 | 7_4:-53609425 | Msa1162830:CDS |
| TTGTCTCTTACGGATCCTCA+TGG | 0.491763 | 7_4:+53609979 | None:intergenic |
| AAGCTATTCCCATAAAGAAA+AGG | 0.492126 | 7_4:-53608828 | Msa1162830:CDS |
| AAAAGTGAATATAAAGAAGA+AGG | 0.502625 | 7_4:-53608680 | Msa1162830:CDS |
| TGTTCAGAAGAGCTTGATGA+TGG | 0.502827 | 7_4:+53608969 | None:intergenic |
| TGCAGTCGTGTTAATGGAAG+AGG | 0.503807 | 7_4:-53608619 | Msa1162830:CDS |
| TCACAACAACATGTTTCAGC+TGG | 0.514425 | 7_4:-53609839 | Msa1162830:CDS |
| TGTTTAGTTTCCCGATCAGT+GGG | 0.515803 | 7_4:+53609777 | None:intergenic |
| TTGTTTAGTTTCCCGATCAG+TGG | 0.522558 | 7_4:+53609776 | None:intergenic |
| GTGAACTGATGGAAGGTTCA+AGG | 0.524643 | 7_4:-53608642 | Msa1162830:CDS |
| CGGTGACTGGTTCATCATGT+GGG | 0.530912 | 7_4:+53609907 | None:intergenic |
| CATCTGGTCTTGAGGAAAGT+GGG | 0.531376 | 7_4:-53609739 | Msa1162830:CDS |
| CCATCTGGTCTTGAGGAAAG+TGG | 0.536650 | 7_4:-53609740 | Msa1162830:CDS |
| GATCAAACACTCCCACTGAT+CGG | 0.538484 | 7_4:-53609788 | Msa1162830:CDS |
| TGTGAGCATCATTTAGGGAA+AGG | 0.539369 | 7_4:-53608556 | Msa1162830:CDS |
| GCAAAGAAAAGAATGAAGCT+TGG | 0.541339 | 7_4:-53608343 | Msa1162830:CDS |
| AAAGGAAGGTTCGAGAGTAA+TGG | 0.542768 | 7_4:-53608805 | Msa1162830:CDS |
| GTTGCACCACCATCGGTGAC+TGG | 0.543665 | 7_4:+53609894 | None:intergenic |
| TCGGTGACTGGTTCATCATG+TGG | 0.550743 | 7_4:+53609906 | None:intergenic |
| AGCATCATTTAGGGAAAGGA+AGG | 0.554136 | 7_4:-53608552 | Msa1162830:CDS |
| AGTGGGAGTGTTTGATCAGA+CGG | 0.559167 | 7_4:+53609794 | None:intergenic |
| GAAAAGAATGAAGCTTGGAA+TGG | 0.573593 | 7_4:-53608338 | Msa1162830:CDS |
| TAATGATAGTAAGAAAGTGA+AGG | 0.575995 | 7_4:-53608773 | Msa1162830:CDS |
| TCACCGATGGTGGTGCAACT+TGG | 0.576709 | 7_4:-53609890 | Msa1162830:CDS |
| CCACTTTCCTCAAGACCAGA+TGG | 0.583116 | 7_4:+53609740 | None:intergenic |
| TGATTATCCATCTGGTCTTG+AGG | 0.584674 | 7_4:-53609747 | Msa1162830:CDS |
| TGTCTCTTACGGATCCTCAT+GGG | 0.584685 | 7_4:+53609980 | None:intergenic |
| CCATAAAGAAAAGGAAAGGA+AGG | 0.590406 | 7_4:-53608819 | Msa1162830:CDS |
| TCACCAAGTTGCACCACCAT+CGG | 0.594191 | 7_4:+53609887 | None:intergenic |
| ATTCCCATAAAGAAAAGGAA+AGG | 0.595849 | 7_4:-53608823 | Msa1162830:CDS |
| CTTTCAATCTTGCACCCATG+AGG | 0.597455 | 7_4:-53609994 | Msa1162830:exon |
| GTGTTAATGGAAGAGGATGG+AGG | 0.605411 | 7_4:-53608612 | Msa1162830:CDS |
| TCATCAAGCTCTTCTGAACA+AGG | 0.621692 | 7_4:-53608966 | Msa1162830:intron |
| ATCTGGTCTTGAGGAAAGTG+GGG | 0.630940 | 7_4:-53609738 | Msa1162830:CDS |
| CATGATGAACCAGTCACCGA+TGG | 0.633305 | 7_4:-53609903 | Msa1162830:CDS |
| TGTTGTGATTGTGAAGAACA+AGG | 0.634928 | 7_4:+53609854 | None:intergenic |
| GTAGATGGGAGATGGTGTGA+GGG | 0.636074 | 7_4:-53608856 | Msa1162830:intron |
| TGTAGATGGGAGATGGTGTG+AGG | 0.639136 | 7_4:-53608857 | Msa1162830:intron |
| GATGGTGGTGCAACTTGGTG+AGG | 0.640589 | 7_4:-53609885 | Msa1162830:CDS |
| GTATATATGTAGATGGGAGA+TGG | 0.644594 | 7_4:-53608864 | Msa1162830:intron |
| GGTGACTGGTTCATCATGTG+GGG | 0.651550 | 7_4:+53609908 | None:intergenic |
| ATGGTGGTGCAACTTGGTGA+GGG | 0.654742 | 7_4:-53609884 | Msa1162830:CDS |
| AGGGGAAGTGAACTGATGGA+AGG | 0.656305 | 7_4:-53608649 | Msa1162830:CDS |
| ATTGGGACAGACAGACAACA+AGG | 0.664244 | 7_4:-53608290 | Msa1162830:CDS |
| TGGGGATCTGAGAGATGCAA+AGG | 0.665335 | 7_4:+53609926 | None:intergenic |
| AGATGAGTAAACTCATCTAG+TGG | 0.665874 | 7_4:+53610153 | None:intergenic |
| GTCGTGTTAATGGAAGAGGA+TGG | 0.680449 | 7_4:-53608615 | Msa1162830:CDS |
| CTGATCGGGAAACTAAACAA+CGG | 0.695161 | 7_4:-53609773 | Msa1162830:CDS |
| GATGAACCAGTCACCGATGG+TGG | 0.720438 | 7_4:-53609900 | Msa1162830:CDS |
| TGAATAAGAAGTGTTCTCTG+GGG | 0.734621 | 7_4:-53608732 | Msa1162830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGAATAATAAAATCAAAA+TGG | + | chr7_4:53608571-53608590 | None:intergenic | 10.0% |
| !!! | TTTAAGAATTTCTATTATTT+TGG | - | chr7_4:53610054-53610073 | Msa1162830:five_prime_UTR | 10.0% |
| !! | TAAGAATAATAAAATCAAAA+TGG | + | chr7_4:53608571-53608590 | None:intergenic | 10.0% |
| !!! | TTTAAGAATTTCTATTATTT+TGG | - | chr7_4:53610054-53610073 | Msa1162830:five_prime_UTR | 10.0% |
| !! | TTTATTCAAAAATATAGCAA+TGG | - | chr7_4:53608960-53608979 | Msa1162830:intron | 15.0% |
| !! | ATAAACAATATACATATACA+TGG | + | chr7_4:53609322-53609341 | None:intergenic | 15.0% |
| !! | TTTATATGTATATATGTAGA+TGG | - | chr7_4:53609366-53609385 | Msa1162830:intron | 15.0% |
| !! | TTATATGTATATATGTAGAT+GGG | - | chr7_4:53609367-53609386 | Msa1162830:intron | 15.0% |
| !!! | ATAATTTTGTTGTAATCTTT+CGG | + | chr7_4:53610001-53610020 | None:intergenic | 15.0% |
| !! | TTTATTCAAAAATATAGCAA+TGG | - | chr7_4:53608960-53608979 | Msa1162830:intron | 15.0% |
| !! | ATAAACAATATACATATACA+TGG | + | chr7_4:53609322-53609341 | None:intergenic | 15.0% |
| !! | TTTATATGTATATATGTAGA+TGG | - | chr7_4:53609366-53609385 | Msa1162830:intron | 15.0% |
| !! | TTATATGTATATATGTAGAT+GGG | - | chr7_4:53609367-53609386 | Msa1162830:intron | 15.0% |
| !!! | ATAATTTTGTTGTAATCTTT+CGG | + | chr7_4:53610001-53610020 | None:intergenic | 15.0% |
| !!! | TTGTTTAATTGTTTCTGATT+TGG | - | chr7_4:53608611-53608630 | Msa1162830:CDS | 20.0% |
| !!! | TGTTTAATTGTTTCTGATTT+GGG | - | chr7_4:53608612-53608631 | Msa1162830:CDS | 20.0% |
| !! | TTAAATAAATTTGACACCAA+GGG | + | chr7_4:53608680-53608699 | None:intergenic | 20.0% |
| !! | ATTAAATAAATTTGACACCA+AGG | + | chr7_4:53608681-53608700 | None:intergenic | 20.0% |
| !!! | TATATTGTATCCATGTATTT+TGG | - | chr7_4:53608755-53608774 | Msa1162830:CDS | 20.0% |
| !! | ATAACAAAAGTAATCATATC+AGG | - | chr7_4:53608837-53608856 | Msa1162830:CDS | 20.0% |
| !!! | ATTTTAGAGATAAGAAAGAT+GGG | + | chr7_4:53609027-53609046 | None:intergenic | 20.0% |
| !!! | ATCTTTCTTATCTCTAAAAT+GGG | - | chr7_4:53609027-53609046 | Msa1162830:intron | 20.0% |
| !!! | ATTAACGAAATTTAGAACAT+AGG | + | chr7_4:53609180-53609199 | None:intergenic | 20.0% |
| !! | ATGTATATTGTTTATGAGAA+TGG | - | chr7_4:53609327-53609346 | Msa1162830:intron | 20.0% |
| !! | AAAAGTGAATATAAAGAAGA+AGG | - | chr7_4:53609557-53609576 | Msa1162830:intron | 20.0% |
| !! | GTTAGAAATAGATCTAATAT+TGG | - | chr7_4:53609726-53609745 | Msa1162830:CDS | 20.0% |
| !! | TTGAAAAGAAAACCATTTAT+GGG | - | chr7_4:53609823-53609842 | Msa1162830:CDS | 20.0% |
| !! | ATTATCATTACATGTATTTC+AGG | - | chr7_4:53610016-53610035 | Msa1162830:five_prime_UTR | 20.0% |
| !!! | TTGTTTAATTGTTTCTGATT+TGG | - | chr7_4:53608611-53608630 | Msa1162830:CDS | 20.0% |
| !!! | TGTTTAATTGTTTCTGATTT+GGG | - | chr7_4:53608612-53608631 | Msa1162830:CDS | 20.0% |
| !! | TTAAATAAATTTGACACCAA+GGG | + | chr7_4:53608680-53608699 | None:intergenic | 20.0% |
| !! | ATTAAATAAATTTGACACCA+AGG | + | chr7_4:53608681-53608700 | None:intergenic | 20.0% |
| !!! | TATATTGTATCCATGTATTT+TGG | - | chr7_4:53608755-53608774 | Msa1162830:CDS | 20.0% |
| !! | ATAACAAAAGTAATCATATC+AGG | - | chr7_4:53608837-53608856 | Msa1162830:CDS | 20.0% |
| !!! | ATTTTAGAGATAAGAAAGAT+GGG | + | chr7_4:53609027-53609046 | None:intergenic | 20.0% |
| !!! | ATCTTTCTTATCTCTAAAAT+GGG | - | chr7_4:53609027-53609046 | Msa1162830:intron | 20.0% |
| !!! | ATTAACGAAATTTAGAACAT+AGG | + | chr7_4:53609180-53609199 | None:intergenic | 20.0% |
| !! | ATGTATATTGTTTATGAGAA+TGG | - | chr7_4:53609327-53609346 | Msa1162830:intron | 20.0% |
| !! | AAAAGTGAATATAAAGAAGA+AGG | - | chr7_4:53609557-53609576 | Msa1162830:intron | 20.0% |
| !! | GTTAGAAATAGATCTAATAT+TGG | - | chr7_4:53609726-53609745 | Msa1162830:CDS | 20.0% |
| !! | TTGAAAAGAAAACCATTTAT+GGG | - | chr7_4:53609823-53609842 | Msa1162830:CDS | 20.0% |
| !! | ATTATCATTACATGTATTTC+AGG | - | chr7_4:53610016-53610035 | Msa1162830:five_prime_UTR | 20.0% |
| !! | TTAGAAGATAAAGGATCTTT+TGG | + | chr7_4:53608156-53608175 | None:intergenic | 25.0% |
| !! | AGACTTTGTTTAGAAGATAA+AGG | + | chr7_4:53608165-53608184 | None:intergenic | 25.0% |
| ! | TAAATAAATTTGACACCAAG+GGG | + | chr7_4:53608679-53608698 | None:intergenic | 25.0% |
| !!! | CATTTTAGAGATAAGAAAGA+TGG | + | chr7_4:53609028-53609047 | None:intergenic | 25.0% |
| !! | CATCTTTCTTATCTCTAAAA+TGG | - | chr7_4:53609026-53609045 | Msa1162830:intron | 25.0% |
| !!! | ATGTGATTTTTGGTCTTTTT+GGG | - | chr7_4:53609202-53609221 | Msa1162830:intron | 25.0% |
| ! | TAATGATAGTAAGAAAGTGA+AGG | - | chr7_4:53609464-53609483 | Msa1162830:intron | 25.0% |
| ! | CTTGAAAAGAAAACCATTTA+TGG | - | chr7_4:53609822-53609841 | Msa1162830:CDS | 25.0% |
| !! | CTTTTCTTTGCAATTATTAG+TGG | + | chr7_4:53609885-53609904 | None:intergenic | 25.0% |
| !!! | CAAGCTTAAGTTGAATATAT+AGG | + | chr7_4:53610111-53610130 | None:intergenic | 25.0% |
| ! | CAATAGTAATTAGTACTTAG+AGG | + | chr7_4:53610187-53610206 | None:intergenic | 25.0% |
| !! | TTAGAAGATAAAGGATCTTT+TGG | + | chr7_4:53608156-53608175 | None:intergenic | 25.0% |
| !! | AGACTTTGTTTAGAAGATAA+AGG | + | chr7_4:53608165-53608184 | None:intergenic | 25.0% |
| ! | TAAATAAATTTGACACCAAG+GGG | + | chr7_4:53608679-53608698 | None:intergenic | 25.0% |
| !!! | CATTTTAGAGATAAGAAAGA+TGG | + | chr7_4:53609028-53609047 | None:intergenic | 25.0% |
| !! | CATCTTTCTTATCTCTAAAA+TGG | - | chr7_4:53609026-53609045 | Msa1162830:intron | 25.0% |
| !!! | ATGTGATTTTTGGTCTTTTT+GGG | - | chr7_4:53609202-53609221 | Msa1162830:intron | 25.0% |
| ! | TAATGATAGTAAGAAAGTGA+AGG | - | chr7_4:53609464-53609483 | Msa1162830:intron | 25.0% |
| ! | CTTGAAAAGAAAACCATTTA+TGG | - | chr7_4:53609822-53609841 | Msa1162830:CDS | 25.0% |
| !! | CTTTTCTTTGCAATTATTAG+TGG | + | chr7_4:53609885-53609904 | None:intergenic | 25.0% |
| !!! | CAAGCTTAAGTTGAATATAT+AGG | + | chr7_4:53610111-53610130 | None:intergenic | 25.0% |
| ! | CAATAGTAATTAGTACTTAG+AGG | + | chr7_4:53610187-53610206 | None:intergenic | 25.0% |
| AGAAAAGAACTTGTCTCTTA+CGG | + | chr7_4:53608271-53608290 | None:intergenic | 30.0% | |
| !!! | TGGTTTTTTTGACTTACCAA+AGG | + | chr7_4:53608551-53608570 | None:intergenic | 30.0% |
| AAATAATTTCACACCCAGAA+AGG | - | chr7_4:53608727-53608746 | Msa1162830:CDS | 30.0% | |
| AATAATTTCACACCCAGAAA+GGG | - | chr7_4:53608728-53608747 | Msa1162830:CDS | 30.0% | |
| ACAATATAAGAACCCTTTCT+GGG | + | chr7_4:53608743-53608762 | None:intergenic | 30.0% | |
| TACAATATAAGAACCCTTTC+TGG | + | chr7_4:53608744-53608763 | None:intergenic | 30.0% | |
| !!! | TGTATCCATGTATTTTGGTA+TGG | - | chr7_4:53608760-53608779 | Msa1162830:CDS | 30.0% |
| ATCAACCATACCAAAATACA+TGG | + | chr7_4:53608768-53608787 | None:intergenic | 30.0% | |
| !!! | TATGGTTGATTTGATTTTGC+AGG | - | chr7_4:53608778-53608797 | Msa1162830:CDS | 30.0% |
| !!! | ACATTTTTCTTTTTCGAAGC+TGG | + | chr7_4:53608931-53608950 | None:intergenic | 30.0% |
| ! | TAAGAAAGATGGGCTTAATT+TGG | + | chr7_4:53609017-53609036 | None:intergenic | 30.0% |
| CATTATTGTTGAGGAACAAA+GGG | + | chr7_4:53609114-53609133 | None:intergenic | 30.0% | |
| ACATTATTGTTGAGGAACAA+AGG | + | chr7_4:53609115-53609134 | None:intergenic | 30.0% | |
| ! | TCGTTAATGCATGTGATTTT+TGG | - | chr7_4:53609192-53609211 | Msa1162830:intron | 30.0% |
| !!! | CATGTGATTTTTGGTCTTTT+TGG | - | chr7_4:53609201-53609220 | Msa1162830:intron | 30.0% |
| AAGCTATTCCCATAAAGAAA+AGG | - | chr7_4:53609409-53609428 | Msa1162830:CDS | 30.0% | |
| ATTCCCATAAAGAAAAGGAA+AGG | - | chr7_4:53609414-53609433 | Msa1162830:CDS | 30.0% | |
| ! | CTTCCTTTCCTTTTCTTTAT+GGG | + | chr7_4:53609420-53609439 | None:intergenic | 30.0% |
| AGAACACTTCTTATTCATCT+TGG | + | chr7_4:53609502-53609521 | None:intergenic | 30.0% | |
| !! | ATGAATAAGAAGTGTTCTCT+GGG | - | chr7_4:53609504-53609523 | Msa1162830:intron | 30.0% |
| TAAAGAAGAAGGTGACAAAA+AGG | - | chr7_4:53609568-53609587 | Msa1162830:intron | 30.0% | |
| AAAGAAGAAGGTGACAAAAA+GGG | - | chr7_4:53609569-53609588 | Msa1162830:intron | 30.0% | |
| CTTATCATCATTCCCATAAA+TGG | + | chr7_4:53609838-53609857 | None:intergenic | 30.0% | |
| TTATGGGAATGATGATAAGT+TGG | - | chr7_4:53609839-53609858 | Msa1162830:CDS | 30.0% | |
| !!! | CTTAAGCTTGTGCTTTATTT+TGG | - | chr7_4:53610121-53610140 | Msa1162830:five_prime_UTR | 30.0% |
| AATTAGTACTTAGAGGTCTT+AGG | + | chr7_4:53610180-53610199 | None:intergenic | 30.0% | |
| AGAAAAGAACTTGTCTCTTA+CGG | + | chr7_4:53608271-53608290 | None:intergenic | 30.0% | |
| !!! | TGGTTTTTTTGACTTACCAA+AGG | + | chr7_4:53608551-53608570 | None:intergenic | 30.0% |
| AAATAATTTCACACCCAGAA+AGG | - | chr7_4:53608727-53608746 | Msa1162830:CDS | 30.0% | |
| AATAATTTCACACCCAGAAA+GGG | - | chr7_4:53608728-53608747 | Msa1162830:CDS | 30.0% | |
| ACAATATAAGAACCCTTTCT+GGG | + | chr7_4:53608743-53608762 | None:intergenic | 30.0% | |
| TACAATATAAGAACCCTTTC+TGG | + | chr7_4:53608744-53608763 | None:intergenic | 30.0% | |
| !!! | TGTATCCATGTATTTTGGTA+TGG | - | chr7_4:53608760-53608779 | Msa1162830:CDS | 30.0% |
| ATCAACCATACCAAAATACA+TGG | + | chr7_4:53608768-53608787 | None:intergenic | 30.0% | |
| !!! | TATGGTTGATTTGATTTTGC+AGG | - | chr7_4:53608778-53608797 | Msa1162830:CDS | 30.0% |
| !!! | ACATTTTTCTTTTTCGAAGC+TGG | + | chr7_4:53608931-53608950 | None:intergenic | 30.0% |
| ! | TAAGAAAGATGGGCTTAATT+TGG | + | chr7_4:53609017-53609036 | None:intergenic | 30.0% |
| CATTATTGTTGAGGAACAAA+GGG | + | chr7_4:53609114-53609133 | None:intergenic | 30.0% | |
| ACATTATTGTTGAGGAACAA+AGG | + | chr7_4:53609115-53609134 | None:intergenic | 30.0% | |
| ! | TCGTTAATGCATGTGATTTT+TGG | - | chr7_4:53609192-53609211 | Msa1162830:intron | 30.0% |
| !!! | CATGTGATTTTTGGTCTTTT+TGG | - | chr7_4:53609201-53609220 | Msa1162830:intron | 30.0% |
| AAGCTATTCCCATAAAGAAA+AGG | - | chr7_4:53609409-53609428 | Msa1162830:CDS | 30.0% | |
| ATTCCCATAAAGAAAAGGAA+AGG | - | chr7_4:53609414-53609433 | Msa1162830:CDS | 30.0% | |
| ! | CTTCCTTTCCTTTTCTTTAT+GGG | + | chr7_4:53609420-53609439 | None:intergenic | 30.0% |
| AGAACACTTCTTATTCATCT+TGG | + | chr7_4:53609502-53609521 | None:intergenic | 30.0% | |
| !! | ATGAATAAGAAGTGTTCTCT+GGG | - | chr7_4:53609504-53609523 | Msa1162830:intron | 30.0% |
| TAAAGAAGAAGGTGACAAAA+AGG | - | chr7_4:53609568-53609587 | Msa1162830:intron | 30.0% | |
| AAAGAAGAAGGTGACAAAAA+GGG | - | chr7_4:53609569-53609588 | Msa1162830:intron | 30.0% | |
| CTTATCATCATTCCCATAAA+TGG | + | chr7_4:53609838-53609857 | None:intergenic | 30.0% | |
| TTATGGGAATGATGATAAGT+TGG | - | chr7_4:53609839-53609858 | Msa1162830:CDS | 30.0% | |
| !!! | CTTAAGCTTGTGCTTTATTT+TGG | - | chr7_4:53610121-53610140 | Msa1162830:five_prime_UTR | 30.0% |
| AATTAGTACTTAGAGGTCTT+AGG | + | chr7_4:53610180-53610199 | None:intergenic | 30.0% | |
| CATCTAGTGGTCTACTATAT+GGG | + | chr7_4:53608074-53608093 | None:intergenic | 35.0% | |
| TCATCTAGTGGTCTACTATA+TGG | + | chr7_4:53608075-53608094 | None:intergenic | 35.0% | |
| AGATGAGTAAACTCATCTAG+TGG | + | chr7_4:53608087-53608106 | None:intergenic | 35.0% | |
| ! | GATTGTGAAGAACAAGGTTT+TGG | + | chr7_4:53608380-53608399 | None:intergenic | 35.0% |
| TGTTGTGATTGTGAAGAACA+AGG | + | chr7_4:53608386-53608405 | None:intergenic | 35.0% | |
| AGTGCACTACTAGTTATAAC+TGG | - | chr7_4:53609071-53609090 | Msa1162830:intron | 35.0% | |
| ACAAAGGGCAGTATATAGAT+GGG | + | chr7_4:53609099-53609118 | None:intergenic | 35.0% | |
| AACAAAGGGCAGTATATAGA+TGG | + | chr7_4:53609100-53609119 | None:intergenic | 35.0% | |
| TGAGTGCAACATTATTGTTG+AGG | + | chr7_4:53609123-53609142 | None:intergenic | 35.0% | |
| !!! | TTTTTGGGTCTACTTAGCAA+TGG | - | chr7_4:53609217-53609236 | Msa1162830:intron | 35.0% |
| GTATATATGTAGATGGGAGA+TGG | - | chr7_4:53609373-53609392 | Msa1162830:intron | 35.0% | |
| ! | CCTTCCTTTCCTTTTCTTTA+TGG | + | chr7_4:53609421-53609440 | None:intergenic | 35.0% |
| CCATAAAGAAAAGGAAAGGA+AGG | - | chr7_4:53609418-53609437 | Msa1162830:CDS | 35.0% | |
| !! | GATGAATAAGAAGTGTTCTC+TGG | - | chr7_4:53609503-53609522 | Msa1162830:intron | 35.0% |
| !! | TGAATAAGAAGTGTTCTCTG+GGG | - | chr7_4:53609505-53609524 | Msa1162830:intron | 35.0% |
| AAGAAGAAGGTGACAAAAAG+GGG | - | chr7_4:53609570-53609589 | Msa1162830:intron | 35.0% | |
| TGTTGTCAACAAACACTTGT+TGG | - | chr7_4:53609648-53609667 | Msa1162830:intron | 35.0% | |
| TCACTTTGTGAGCATCATTT+AGG | - | chr7_4:53609675-53609694 | Msa1162830:intron | 35.0% | |
| CACTTTGTGAGCATCATTTA+GGG | - | chr7_4:53609676-53609695 | Msa1162830:intron | 35.0% | |
| GCAAAGAAAAGAATGAAGCT+TGG | - | chr7_4:53609894-53609913 | Msa1162830:CDS | 35.0% | |
| GAAAAGAATGAAGCTTGGAA+TGG | - | chr7_4:53609899-53609918 | Msa1162830:CDS | 35.0% | |
| !!! | GCTTGTGCTTTATTTTGGTA+CGG | - | chr7_4:53610126-53610145 | Msa1162830:five_prime_UTR | 35.0% |
| CATCTAGTGGTCTACTATAT+GGG | + | chr7_4:53608074-53608093 | None:intergenic | 35.0% | |
| TCATCTAGTGGTCTACTATA+TGG | + | chr7_4:53608075-53608094 | None:intergenic | 35.0% | |
| AGATGAGTAAACTCATCTAG+TGG | + | chr7_4:53608087-53608106 | None:intergenic | 35.0% | |
| ! | GATTGTGAAGAACAAGGTTT+TGG | + | chr7_4:53608380-53608399 | None:intergenic | 35.0% |
| TGTTGTGATTGTGAAGAACA+AGG | + | chr7_4:53608386-53608405 | None:intergenic | 35.0% | |
| AGTGCACTACTAGTTATAAC+TGG | - | chr7_4:53609071-53609090 | Msa1162830:intron | 35.0% | |
| ACAAAGGGCAGTATATAGAT+GGG | + | chr7_4:53609099-53609118 | None:intergenic | 35.0% | |
| AACAAAGGGCAGTATATAGA+TGG | + | chr7_4:53609100-53609119 | None:intergenic | 35.0% | |
| TGAGTGCAACATTATTGTTG+AGG | + | chr7_4:53609123-53609142 | None:intergenic | 35.0% | |
| !!! | TTTTTGGGTCTACTTAGCAA+TGG | - | chr7_4:53609217-53609236 | Msa1162830:intron | 35.0% |
| GTATATATGTAGATGGGAGA+TGG | - | chr7_4:53609373-53609392 | Msa1162830:intron | 35.0% | |
| ! | CCTTCCTTTCCTTTTCTTTA+TGG | + | chr7_4:53609421-53609440 | None:intergenic | 35.0% |
| CCATAAAGAAAAGGAAAGGA+AGG | - | chr7_4:53609418-53609437 | Msa1162830:CDS | 35.0% | |
| !! | GATGAATAAGAAGTGTTCTC+TGG | - | chr7_4:53609503-53609522 | Msa1162830:intron | 35.0% |
| !! | TGAATAAGAAGTGTTCTCTG+GGG | - | chr7_4:53609505-53609524 | Msa1162830:intron | 35.0% |
| AAGAAGAAGGTGACAAAAAG+GGG | - | chr7_4:53609570-53609589 | Msa1162830:intron | 35.0% | |
| TGTTGTCAACAAACACTTGT+TGG | - | chr7_4:53609648-53609667 | Msa1162830:intron | 35.0% | |
| TCACTTTGTGAGCATCATTT+AGG | - | chr7_4:53609675-53609694 | Msa1162830:intron | 35.0% | |
| CACTTTGTGAGCATCATTTA+GGG | - | chr7_4:53609676-53609695 | Msa1162830:intron | 35.0% | |
| GCAAAGAAAAGAATGAAGCT+TGG | - | chr7_4:53609894-53609913 | Msa1162830:CDS | 35.0% | |
| GAAAAGAATGAAGCTTGGAA+TGG | - | chr7_4:53609899-53609918 | Msa1162830:CDS | 35.0% | |
| !!! | GCTTGTGCTTTATTTTGGTA+CGG | - | chr7_4:53610126-53610145 | Msa1162830:five_prime_UTR | 35.0% |
| TCACAACAACATGTTTCAGC+TGG | - | chr7_4:53608398-53608417 | Msa1162830:CDS | 40.0% | |
| ! | TGTTTAGTTTCCCGATCAGT+GGG | + | chr7_4:53608463-53608482 | None:intergenic | 40.0% |
| ! | TTGTTTAGTTTCCCGATCAG+TGG | + | chr7_4:53608464-53608483 | None:intergenic | 40.0% |
| CTGATCGGGAAACTAAACAA+CGG | - | chr7_4:53608464-53608483 | Msa1162830:CDS | 40.0% | |
| AACGGCTATGATTATCCATC+TGG | - | chr7_4:53608482-53608501 | Msa1162830:CDS | 40.0% | |
| !! | TGATTATCCATCTGGTCTTG+AGG | - | chr7_4:53608490-53608509 | Msa1162830:CDS | 40.0% |
| TTTGTCCAATCTCTTGCAAG+TGG | - | chr7_4:53608650-53608669 | Msa1162830:CDS | 40.0% | |
| TTGCAGGATGAGAAAGTTAG+AGG | - | chr7_4:53608794-53608813 | Msa1162830:CDS | 40.0% | |
| AGTGCACTTCAAGTGCAAAA+TGG | + | chr7_4:53609059-53609078 | None:intergenic | 40.0% | |
| CAAAGGGCAGTATATAGATG+GGG | + | chr7_4:53609098-53609117 | None:intergenic | 40.0% | |
| ACTTAGCAATGGAGACATCT+TGG | - | chr7_4:53609228-53609247 | Msa1162830:intron | 40.0% | |
| TGTTCAGAAGAGCTTGATGA+TGG | + | chr7_4:53609271-53609290 | None:intergenic | 40.0% | |
| TCATCAAGCTCTTCTGAACA+AGG | - | chr7_4:53609271-53609290 | Msa1162830:intron | 40.0% | |
| AAAGGAAGGTTCGAGAGTAA+TGG | - | chr7_4:53609432-53609451 | Msa1162830:CDS | 40.0% | |
| AAGGTTCGAGAGTAATGGTA+TGG | - | chr7_4:53609437-53609456 | Msa1162830:CDS | 40.0% | |
| AAAAAGGGGAAGTGAACTGA+TGG | - | chr7_4:53609584-53609603 | Msa1162830:intron | 40.0% | |
| TGTGAGCATCATTTAGGGAA+AGG | - | chr7_4:53609681-53609700 | Msa1162830:intron | 40.0% | |
| AGCATCATTTAGGGAAAGGA+AGG | - | chr7_4:53609685-53609704 | Msa1162830:intron | 40.0% | |
| CAATAAGCTGCTCATAGATC+GGG | + | chr7_4:53609931-53609950 | None:intergenic | 40.0% | |
| CCAATAAGCTGCTCATAGAT+CGG | + | chr7_4:53609932-53609951 | None:intergenic | 40.0% | |
| CGATCTATGAGCAGCTTATT+GGG | - | chr7_4:53609930-53609949 | Msa1162830:CDS | 40.0% | |
| TCACAACAACATGTTTCAGC+TGG | - | chr7_4:53608398-53608417 | Msa1162830:CDS | 40.0% | |
| ! | TGTTTAGTTTCCCGATCAGT+GGG | + | chr7_4:53608463-53608482 | None:intergenic | 40.0% |
| ! | TTGTTTAGTTTCCCGATCAG+TGG | + | chr7_4:53608464-53608483 | None:intergenic | 40.0% |
| CTGATCGGGAAACTAAACAA+CGG | - | chr7_4:53608464-53608483 | Msa1162830:CDS | 40.0% | |
| AACGGCTATGATTATCCATC+TGG | - | chr7_4:53608482-53608501 | Msa1162830:CDS | 40.0% | |
| !! | TGATTATCCATCTGGTCTTG+AGG | - | chr7_4:53608490-53608509 | Msa1162830:CDS | 40.0% |
| TTTGTCCAATCTCTTGCAAG+TGG | - | chr7_4:53608650-53608669 | Msa1162830:CDS | 40.0% | |
| TTGCAGGATGAGAAAGTTAG+AGG | - | chr7_4:53608794-53608813 | Msa1162830:CDS | 40.0% | |
| AGTGCACTTCAAGTGCAAAA+TGG | + | chr7_4:53609059-53609078 | None:intergenic | 40.0% | |
| CAAAGGGCAGTATATAGATG+GGG | + | chr7_4:53609098-53609117 | None:intergenic | 40.0% | |
| ACTTAGCAATGGAGACATCT+TGG | - | chr7_4:53609228-53609247 | Msa1162830:intron | 40.0% | |
| TGTTCAGAAGAGCTTGATGA+TGG | + | chr7_4:53609271-53609290 | None:intergenic | 40.0% | |
| TCATCAAGCTCTTCTGAACA+AGG | - | chr7_4:53609271-53609290 | Msa1162830:intron | 40.0% | |
| AAAGGAAGGTTCGAGAGTAA+TGG | - | chr7_4:53609432-53609451 | Msa1162830:CDS | 40.0% | |
| AAGGTTCGAGAGTAATGGTA+TGG | - | chr7_4:53609437-53609456 | Msa1162830:CDS | 40.0% | |
| AAAAAGGGGAAGTGAACTGA+TGG | - | chr7_4:53609584-53609603 | Msa1162830:intron | 40.0% | |
| TGTGAGCATCATTTAGGGAA+AGG | - | chr7_4:53609681-53609700 | Msa1162830:intron | 40.0% | |
| AGCATCATTTAGGGAAAGGA+AGG | - | chr7_4:53609685-53609704 | Msa1162830:intron | 40.0% | |
| CAATAAGCTGCTCATAGATC+GGG | + | chr7_4:53609931-53609950 | None:intergenic | 40.0% | |
| CCAATAAGCTGCTCATAGAT+CGG | + | chr7_4:53609932-53609951 | None:intergenic | 40.0% | |
| CGATCTATGAGCAGCTTATT+GGG | - | chr7_4:53609930-53609949 | Msa1162830:CDS | 40.0% | |
| GAGAGTGAATCTCGTGAGTT+TGG | - | chr7_4:53608199-53608218 | Msa1162830:three_prime_UTR | 45.0% | |
| CTTTCAATCTTGCACCCATG+AGG | - | chr7_4:53608243-53608262 | Msa1162830:three_prime_UTR | 45.0% | |
| TGTCTCTTACGGATCCTCAT+GGG | + | chr7_4:53608260-53608279 | None:intergenic | 45.0% | |
| TTGTCTCTTACGGATCCTCA+TGG | + | chr7_4:53608261-53608280 | None:intergenic | 45.0% | |
| !! | TGTTTCAGCTGGTTTGAGCT+TGG | - | chr7_4:53608409-53608428 | Msa1162830:CDS | 45.0% |
| !! | AGTGGGAGTGTTTGATCAGA+CGG | + | chr7_4:53608446-53608465 | None:intergenic | 45.0% |
| GATCAAACACTCCCACTGAT+CGG | - | chr7_4:53608449-53608468 | Msa1162830:CDS | 45.0% | |
| ATCAAACACTCCCACTGATC+GGG | - | chr7_4:53608450-53608469 | Msa1162830:CDS | 45.0% | |
| !! | CATCTGGTCTTGAGGAAAGT+GGG | - | chr7_4:53608498-53608517 | Msa1162830:CDS | 45.0% |
| !! | ATCTGGTCTTGAGGAAAGTG+GGG | - | chr7_4:53608499-53608518 | Msa1162830:CDS | 45.0% |
| GCTCAACAAGCTAGATCCTT+TGG | - | chr7_4:53608532-53608551 | Msa1162830:CDS | 45.0% | |
| GGTAACCACTTGCAAGAGAT+TGG | + | chr7_4:53608658-53608677 | None:intergenic | 45.0% | |
| AGAGGAGAAGAGAAAGAGAG+TGG | - | chr7_4:53608812-53608831 | Msa1162830:CDS | 45.0% | |
| GTGAACTGATGGAAGGTTCA+AGG | - | chr7_4:53609595-53609614 | Msa1162830:intron | 45.0% | |
| TCAAGGTGCAGTCGTGTTAA+TGG | - | chr7_4:53609612-53609631 | Msa1162830:intron | 45.0% | |
| TGCAGTCGTGTTAATGGAAG+AGG | - | chr7_4:53609618-53609637 | Msa1162830:intron | 45.0% | |
| GTCGTGTTAATGGAAGAGGA+TGG | - | chr7_4:53609622-53609641 | Msa1162830:intron | 45.0% | |
| GTGTTAATGGAAGAGGATGG+AGG | - | chr7_4:53609625-53609644 | Msa1162830:intron | 45.0% | |
| CCGATCTATGAGCAGCTTAT+TGG | - | chr7_4:53609929-53609948 | Msa1162830:CDS | 45.0% | |
| ATTGGGACAGACAGACAACA+AGG | - | chr7_4:53609947-53609966 | Msa1162830:CDS | 45.0% | |
| GAGAGTGAATCTCGTGAGTT+TGG | - | chr7_4:53608199-53608218 | Msa1162830:three_prime_UTR | 45.0% | |
| CTTTCAATCTTGCACCCATG+AGG | - | chr7_4:53608243-53608262 | Msa1162830:three_prime_UTR | 45.0% | |
| TGTCTCTTACGGATCCTCAT+GGG | + | chr7_4:53608260-53608279 | None:intergenic | 45.0% | |
| TTGTCTCTTACGGATCCTCA+TGG | + | chr7_4:53608261-53608280 | None:intergenic | 45.0% | |
| !! | TGTTTCAGCTGGTTTGAGCT+TGG | - | chr7_4:53608409-53608428 | Msa1162830:CDS | 45.0% |
| !! | AGTGGGAGTGTTTGATCAGA+CGG | + | chr7_4:53608446-53608465 | None:intergenic | 45.0% |
| GATCAAACACTCCCACTGAT+CGG | - | chr7_4:53608449-53608468 | Msa1162830:CDS | 45.0% | |
| ATCAAACACTCCCACTGATC+GGG | - | chr7_4:53608450-53608469 | Msa1162830:CDS | 45.0% | |
| !! | CATCTGGTCTTGAGGAAAGT+GGG | - | chr7_4:53608498-53608517 | Msa1162830:CDS | 45.0% |
| !! | ATCTGGTCTTGAGGAAAGTG+GGG | - | chr7_4:53608499-53608518 | Msa1162830:CDS | 45.0% |
| GCTCAACAAGCTAGATCCTT+TGG | - | chr7_4:53608532-53608551 | Msa1162830:CDS | 45.0% | |
| GGTAACCACTTGCAAGAGAT+TGG | + | chr7_4:53608658-53608677 | None:intergenic | 45.0% | |
| AGAGGAGAAGAGAAAGAGAG+TGG | - | chr7_4:53608812-53608831 | Msa1162830:CDS | 45.0% | |
| GTGAACTGATGGAAGGTTCA+AGG | - | chr7_4:53609595-53609614 | Msa1162830:intron | 45.0% | |
| TCAAGGTGCAGTCGTGTTAA+TGG | - | chr7_4:53609612-53609631 | Msa1162830:intron | 45.0% | |
| TGCAGTCGTGTTAATGGAAG+AGG | - | chr7_4:53609618-53609637 | Msa1162830:intron | 45.0% | |
| GTCGTGTTAATGGAAGAGGA+TGG | - | chr7_4:53609622-53609641 | Msa1162830:intron | 45.0% | |
| GTGTTAATGGAAGAGGATGG+AGG | - | chr7_4:53609625-53609644 | Msa1162830:intron | 45.0% | |
| CCGATCTATGAGCAGCTTAT+TGG | - | chr7_4:53609929-53609948 | Msa1162830:CDS | 45.0% | |
| ATTGGGACAGACAGACAACA+AGG | - | chr7_4:53609947-53609966 | Msa1162830:CDS | 45.0% | |
| TGGGGATCTGAGAGATGCAA+AGG | + | chr7_4:53608314-53608333 | None:intergenic | 50.0% | |
| ! | GGTGACTGGTTCATCATGTG+GGG | + | chr7_4:53608332-53608351 | None:intergenic | 50.0% |
| ! | CGGTGACTGGTTCATCATGT+GGG | + | chr7_4:53608333-53608352 | None:intergenic | 50.0% |
| ! | TCGGTGACTGGTTCATCATG+TGG | + | chr7_4:53608334-53608353 | None:intergenic | 50.0% |
| CATGATGAACCAGTCACCGA+TGG | - | chr7_4:53608334-53608353 | Msa1162830:CDS | 50.0% | |
| TCACCAAGTTGCACCACCAT+CGG | + | chr7_4:53608353-53608372 | None:intergenic | 50.0% | |
| ! | ATGGTGGTGCAACTTGGTGA+GGG | - | chr7_4:53608353-53608372 | Msa1162830:CDS | 50.0% |
| CCACTTTCCTCAAGACCAGA+TGG | + | chr7_4:53608500-53608519 | None:intergenic | 50.0% | |
| !! | CCATCTGGTCTTGAGGAAAG+TGG | - | chr7_4:53608497-53608516 | Msa1162830:CDS | 50.0% |
| TCTTGCAAGTGGTTACCCCT+TGG | - | chr7_4:53608661-53608680 | Msa1162830:CDS | 50.0% | |
| TGTAGATGGGAGATGGTGTG+AGG | - | chr7_4:53609380-53609399 | Msa1162830:intron | 50.0% | |
| GTAGATGGGAGATGGTGTGA+GGG | - | chr7_4:53609381-53609400 | Msa1162830:intron | 50.0% | |
| AGGGGAAGTGAACTGATGGA+AGG | - | chr7_4:53609588-53609607 | Msa1162830:intron | 50.0% | |
| TGGGGATCTGAGAGATGCAA+AGG | + | chr7_4:53608314-53608333 | None:intergenic | 50.0% | |
| ! | GGTGACTGGTTCATCATGTG+GGG | + | chr7_4:53608332-53608351 | None:intergenic | 50.0% |
| ! | CGGTGACTGGTTCATCATGT+GGG | + | chr7_4:53608333-53608352 | None:intergenic | 50.0% |
| ! | TCGGTGACTGGTTCATCATG+TGG | + | chr7_4:53608334-53608353 | None:intergenic | 50.0% |
| CATGATGAACCAGTCACCGA+TGG | - | chr7_4:53608334-53608353 | Msa1162830:CDS | 50.0% | |
| TCACCAAGTTGCACCACCAT+CGG | + | chr7_4:53608353-53608372 | None:intergenic | 50.0% | |
| ! | ATGGTGGTGCAACTTGGTGA+GGG | - | chr7_4:53608353-53608372 | Msa1162830:CDS | 50.0% |
| CCACTTTCCTCAAGACCAGA+TGG | + | chr7_4:53608500-53608519 | None:intergenic | 50.0% | |
| !! | CCATCTGGTCTTGAGGAAAG+TGG | - | chr7_4:53608497-53608516 | Msa1162830:CDS | 50.0% |
| TCTTGCAAGTGGTTACCCCT+TGG | - | chr7_4:53608661-53608680 | Msa1162830:CDS | 50.0% | |
| TGTAGATGGGAGATGGTGTG+AGG | - | chr7_4:53609380-53609399 | Msa1162830:intron | 50.0% | |
| GTAGATGGGAGATGGTGTGA+GGG | - | chr7_4:53609381-53609400 | Msa1162830:intron | 50.0% | |
| AGGGGAAGTGAACTGATGGA+AGG | - | chr7_4:53609588-53609607 | Msa1162830:intron | 50.0% | |
| GATGAACCAGTCACCGATGG+TGG | - | chr7_4:53608337-53608356 | Msa1162830:CDS | 55.0% | |
| ! | TCACCGATGGTGGTGCAACT+TGG | - | chr7_4:53608347-53608366 | Msa1162830:CDS | 55.0% |
| ! | GATGGTGGTGCAACTTGGTG+AGG | - | chr7_4:53608352-53608371 | Msa1162830:CDS | 55.0% |
| GATGAACCAGTCACCGATGG+TGG | - | chr7_4:53608337-53608356 | Msa1162830:CDS | 55.0% | |
| ! | TCACCGATGGTGGTGCAACT+TGG | - | chr7_4:53608347-53608366 | Msa1162830:CDS | 55.0% |
| ! | GATGGTGGTGCAACTTGGTG+AGG | - | chr7_4:53608352-53608371 | Msa1162830:CDS | 55.0% |
| GTTGCACCACCATCGGTGAC+TGG | + | chr7_4:53608346-53608365 | None:intergenic | 60.0% | |
| GTTGCACCACCATCGGTGAC+TGG | + | chr7_4:53608346-53608365 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 53608045 | 53610214 | 53608045 | ID=Msa1162830;Name=Msa1162830 |
| chr7_4 | mRNA | 53608045 | 53610214 | 53608045 | ID=Msa1162830-mRNA-1;Parent=Msa1162830;Name=Msa1162830-mRNA-1;_AED=0.28;_eAED=0.28;_QI=215|1|1|1|1|1|4|219|340 |
| chr7_4 | exon | 53608045 | 53608874 | 53608045 | ID=Msa1162830-mRNA-1:exon:15553;Parent=Msa1162830-mRNA-1 |
| chr7_4 | exon | 53608967 | 53609025 | 53608967 | ID=Msa1162830-mRNA-1:exon:15552;Parent=Msa1162830-mRNA-1 |
| chr7_4 | exon | 53609401 | 53609459 | 53609401 | ID=Msa1162830-mRNA-1:exon:15551;Parent=Msa1162830-mRNA-1 |
| chr7_4 | exon | 53609706 | 53610214 | 53609706 | ID=Msa1162830-mRNA-1:exon:15550;Parent=Msa1162830-mRNA-1 |
| chr7_4 | five_prime_UTR | 53610000 | 53610214 | 53610000 | ID=Msa1162830-mRNA-1:five_prime_utr;Parent=Msa1162830-mRNA-1 |
| chr7_4 | CDS | 53609706 | 53609999 | 53609706 | ID=Msa1162830-mRNA-1:cds;Parent=Msa1162830-mRNA-1 |
| chr7_4 | CDS | 53609401 | 53609459 | 53609401 | ID=Msa1162830-mRNA-1:cds;Parent=Msa1162830-mRNA-1 |
| chr7_4 | CDS | 53608967 | 53609025 | 53608967 | ID=Msa1162830-mRNA-1:cds;Parent=Msa1162830-mRNA-1 |
| chr7_4 | CDS | 53608264 | 53608874 | 53608264 | ID=Msa1162830-mRNA-1:cds;Parent=Msa1162830-mRNA-1 |
| chr7_4 | three_prime_UTR | 53608045 | 53608263 | 53608045 | ID=Msa1162830-mRNA-1:three_prime_utr;Parent=Msa1162830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
