AlfalfaGEDB | Msa0141120

M. sativa cultivar zhongmu-4 / Msa0141120

KEGG: K03921
GO: GO:0005575 GO:0016020
PFAM: PF03405.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0141120	XP_003602146.1	94.262	366	21	0	1	366	1	366	0.0	729

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0141120	sp\|Q84VY3\|STAD6_ARATH	68.644	354	106	2	18	366	38	391	0.0	517

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0141120	G7J653	94.262	366	21	0	1	366	1	366	0.0	729

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006980	Msa0141120	0.815261	1.012087e-51	-8.615850e-47
Msa0019600	Msa0141120	0.872833	2.346740e-67	-8.615850e-47
Msa0066320	Msa0141120	0.813942	1.982104e-51	-8.615850e-47
Msa0111750	Msa0141120	0.846852	1.674334e-59	-8.615850e-47
Msa0124130	Msa0141120	0.839611	1.428358e-57	-8.615850e-47
Msa0141120	Msa0149140	0.844129	9.149547e-59	-8.615850e-47
Msa0141120	Msa0156250	0.800225	1.592408e-48	-8.615850e-47
Msa0141120	Msa0185490	0.835800	1.358540e-56	-8.615850e-47
Msa0141120	Msa0212150	0.810872	9.286418e-51	-8.615850e-47
Msa0141120	Msa0239030	0.804898	1.732003e-49	-8.615850e-47
Msa0141120	Msa0252630	0.809145	2.186587e-50	-8.615850e-47
Msa0141120	Msa0252770	0.818250	2.161899e-52	-8.615850e-47
Msa0141120	Msa0291330	0.800022	1.751014e-48	-8.615850e-47
Msa0141120	Msa0306120	0.839834	1.249833e-57	-8.615850e-47
Msa0141120	Msa0329620	0.815237	1.024861e-51	-8.615850e-47
Msa0141120	Msa0343660	0.827778	1.296428e-54	-8.615850e-47
Msa0141120	Msa0344570	0.840720	7.333995e-58	-8.615850e-47
Msa0141120	Msa0359250	0.877591	5.556897e-69	-8.615850e-47
Msa0141120	Msa0392420	0.836466	9.203400e-57	-8.615850e-47
Msa0141120	Msa0392460	0.836147	1.109474e-56	-8.615850e-47
Msa0141120	Msa0392490	0.854996	8.481379e-62	-8.615850e-47
Msa0141120	Msa0406000	0.874575	6.066415e-68	-8.615850e-47
Msa0141120	Msa0424330	0.836896	7.150930e-57	-8.615850e-47
Msa0141120	Msa0424340	0.857300	1.792915e-62	-8.615850e-47
Msa0141120	Msa0424350	0.937683	2.326249e-98	-8.615850e-47
Msa0141120	Msa0451400	0.873129	1.867552e-67	-8.615850e-47
Msa0141120	Msa0487570	0.839635	1.408661e-57	-8.615850e-47
Msa0141120	Msa0487630	0.849489	3.128689e-60	-8.615850e-47
Msa0141120	Msa0492190	0.855494	6.075145e-62	-8.615850e-47
Msa0141120	Msa0515950	0.860452	2.045506e-63	-8.615850e-47
Msa0141120	Msa0534930	0.847868	8.808388e-60	-8.615850e-47
Msa0141120	Msa0535040	0.822034	2.939658e-53	-8.615850e-47
Msa0141120	Msa0537920	0.804819	1.798567e-49	-8.615850e-47
Msa0141120	Msa0591790	0.849002	4.275122e-60	-8.615850e-47
Msa0141120	Msa0594090	0.831713	1.428264e-55	-8.615850e-47
Msa0141120	Msa0641250	0.814554	1.452524e-51	-8.615850e-47
Msa0141120	Msa0669840	0.851097	1.107634e-60	-8.615850e-47
Msa0141120	Msa0739580	0.861858	7.635909e-64	-8.615850e-47
Msa0141120	Msa0748400	0.814238	1.705366e-51	-8.615850e-47
Msa0141120	Msa0751890	0.817405	3.353997e-52	-8.615850e-47
Msa0141120	Msa0752840	0.802261	6.100637e-49	-8.615850e-47
Msa0141120	Msa0764820	0.800494	1.403732e-48	-8.615850e-47
Msa0141120	Msa0770290	0.809643	1.710005e-50	-8.615850e-47
Msa0141120	Msa0782360	0.830105	3.541318e-55	-8.615850e-47
Msa0141120	Msa0831940	0.814036	1.890488e-51	-8.615850e-47
Msa0141120	Msa0843220	0.802223	6.212002e-49	-8.615850e-47
Msa0141120	Msa0860280	0.835601	1.525766e-56	-8.615850e-47
Msa0141120	Msa0867350	0.855361	6.641277e-62	-8.615850e-47
Msa0141120	Msa0896970	0.802690	4.978024e-49	-8.615850e-47
Msa0141120	Msa0898730	0.871471	6.664102e-67	-8.615850e-47
Msa0141120	Msa0916640	0.816386	5.679368e-52	-8.615850e-47
Msa0141120	Msa0929870	0.815715	8.019101e-52	-8.615850e-47
Msa0141120	Msa0944760	0.843539	1.316663e-58	-8.615850e-47
Msa0141120	Msa0944880	0.813085	3.060446e-51	-8.615850e-47
Msa0141120	Msa0953540	0.838899	2.185541e-57	-8.615850e-47
Msa0141120	Msa0961560	0.803164	3.972103e-49	-8.615850e-47
Msa0141120	Msa0996270	0.809941	1.475311e-50	-8.615850e-47
Msa0141120	Msa0999300	0.825023	5.875953e-54	-8.615850e-47
Msa0141120	Msa0999320	0.826219	3.058052e-54	-8.615850e-47
Msa0141120	Msa1001870	0.828013	1.137994e-54	-8.615850e-47
Msa0141120	Msa1001890	0.827032	1.956901e-54	-8.615850e-47
Msa0141120	Msa1037890	0.815131	1.081553e-51	-8.615850e-47
Msa0141120	Msa1037900	0.817025	4.084201e-52	-8.615850e-47
Msa0141120	Msa1081570	0.809089	2.248030e-50	-8.615850e-47
Msa0141120	Msa1084520	0.826764	2.268038e-54	-8.615850e-47
Msa0141120	Msa1127140	0.805719	1.165244e-49	-8.615850e-47
Msa0141120	Msa1129960	0.814033	1.893201e-51	-8.615850e-47
Msa0141120	Msa1129970	0.804054	2.597234e-49	-8.615850e-47
Msa0141120	Msa1130010	0.802202	6.273634e-49	-8.615850e-47
Msa0141120	Msa1166400	0.803724	3.041030e-49	-8.615850e-47
Msa0141120	Msa1171310	0.806379	8.462897e-50	-8.615850e-47
Msa0141120	Msa1201160	0.834706	2.566045e-56	-8.615850e-47
Msa0141120	Msa1228190	0.815227	1.030132e-51	-8.615850e-47
Msa0141120	Msa1294290	0.817393	3.374807e-52	-8.615850e-47
Msa0141120	Msa1305510	0.843135	1.688233e-58	-8.615850e-47
Msa0141120	Msa1326630	0.832271	1.039551e-55	-8.615850e-47
Msa0141120	Msa1374550	0.841860	3.677883e-58	-8.615850e-47
Msa0141120	Msa1378870	0.812191	4.799753e-51	-8.615850e-47
Msa0141120	Msa1394890	0.813294	2.752452e-51	-8.615850e-47
Msa0141120	Msa1406780	0.858298	9.069071e-63	-8.615850e-47
Msa0141120	Msa1421550	0.846659	1.890329e-59	-8.615850e-47
Msa0141120	Msa1423460	0.838504	2.765324e-57	-8.615850e-47
Msa0141120	Msa1431850	0.852702	3.880644e-61	-8.615850e-47
Msa0141120	Msa1455320	0.804888	1.740353e-49	-8.615850e-47
Msa0141120	Msa1461060	0.864175	1.469065e-64	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0141120	MtrunA17_Chr3g0126011	94.262	366	21	0	1	366	1	366	0.0	729
Msa0141120	MtrunA17_Chr3g0125991	90.984	366	33	0	1	366	1	366	0.0	704
Msa0141120	MtrunA17_Chr3g0125781	78.962	366	73	1	5	366	4	369	0.0	607
Msa0141120	MtrunA17_Chr3g0125981	75.204	367	86	1	3	364	2	368	0.0	583
Msa0141120	MtrunA17_Chr1g0159321	74.128	344	86	1	26	366	47	390	0.0	547
Msa0141120	MtrunA17_Chr4g0045661	65.143	350	114	3	23	366	46	393	9.79e-171	481
Msa0141120	MtrunA17_Chr5g0406961	65.143	350	114	3	23	366	97	444	1.80e-170	482

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0141120	AT1G43800.1	68.644	354	106	2	18	366	38	391	0.0	517
Msa0141120	AT3G02630.1	64.793	338	115	2	29	364	59	394	2.44e-166	470
Msa0141120	AT5G16240.1	63.037	349	120	3	23	364	46	392	1.16e-165	469
Msa0141120	AT3G02610.2	59.677	372	130	5	14	366	43	413	1.08e-162	462
Msa0141120	AT3G02610.1	59.677	372	130	5	14	366	41	411	1.42e-162	461
Msa0141120	AT2G43710.2	63.422	339	121	2	29	366	65	401	2.25e-162	461
Msa0141120	AT2G43710.1	63.422	339	121	2	29	366	65	401	2.92e-162	460
Msa0141120	AT3G02620.1	59.890	364	134	4	14	366	41	403	4.85e-162	460
Msa0141120	AT3G02620.2	59.890	364	134	4	14	366	44	406	5.74e-162	459
Msa0141120	AT5G16230.1	61.696	342	126	3	29	366	61	401	5.53e-160	454
Msa0141120	AT5G16230.2	61.963	326	119	3	45	366	1	325	8.67e-154	436
Msa0141120	AT3G02620.3	61.890	328	118	3	45	366	1	327	1.24e-152	433

Find 98 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGATGATTATCTTGTGGTTT+TGG	0.263671	1_3:-75873849	Msa0141120:CDS
GAGACATTGAGTGTGTCTTT+TGG	0.299881	1_3:+75874050	None:intergenic
AATCTTGTGCCGCATCATTT+TGG	0.331259	1_3:+75872714	None:intergenic
CCAACTTGTTTATCCATGTT+TGG	0.336928	1_3:+75873789	None:intergenic
CGCCAGCTCCAATCAAATAT+TGG	0.345449	1_3:+75873615	None:intergenic
GTCTCACACCATGGGCTATA+TGG	0.350432	1_3:-75873739	Msa0141120:CDS
TTCTCAGGGCCTGCACTTGA+TGG	0.351234	1_3:+75873891	None:intergenic
GTGGACTTGCACCTAGATTA+AGG	0.352719	1_3:-75872498	Msa0141120:CDS
GGGCTATATGGTCACGCTCT+TGG	0.370720	1_3:-75873727	Msa0141120:CDS
TGCACCTAGATTAAGGAAAC+TGG	0.374627	1_3:-75872491	Msa0141120:CDS
TGTTCAAATCACTAGAGAAA+TGG	0.378630	1_3:-75874012	Msa0141120:CDS
CTTGATTAGACGATGGAGAT+TGG	0.392791	1_3:-75872572	Msa0141120:CDS
GCTCAGCCGTTCGATTTCTC+AGG	0.393347	1_3:+75873876	None:intergenic
GTTCAAATCACTAGAGAAAT+GGG	0.399384	1_3:-75874011	Msa0141120:CDS
AAGACTATCCAATATTTGAT+TGG	0.400329	1_3:-75873623	Msa0141120:CDS
TGAAGATCCAAGAGAATTTG+TGG	0.410017	1_3:+75872434	None:intergenic
TCTGCAGTGGCACAGCGTAT+TGG	0.420298	1_3:-75872634	Msa0141120:CDS
GGCTGCCAGCATTCCTCCAC+AGG	0.422913	1_3:+75873959	None:intergenic
GTGTACACAAAACCCATGTA+TGG	0.438769	1_3:+75872928	None:intergenic
GGGCCTTTAGATAACATTGT+AGG	0.442941	1_3:+75874095	None:intergenic
GATGGAGTTGGCGACGAGAC+TGG	0.447459	1_3:-75873767	Msa0141120:CDS
TGGAGATTGGAGAAGATTGA+GGG	0.448075	1_3:-75872559	Msa0141120:CDS
TCTTCCAGTTTCCTTAATCT+AGG	0.451053	1_3:+75872487	None:intergenic
AAACTGGAAGAGCGTCTTGA+TGG	0.452571	1_3:-75872475	Msa0141120:CDS
GGCCTTTAGATAACATTGTA+GGG	0.464982	1_3:+75874096	None:intergenic
TACCGAAAACAACCCATACA+TGG	0.467155	1_3:-75872941	Msa0141120:CDS
AGATCAACCACAAATTCTCT+TGG	0.467703	1_3:-75872441	Msa0141120:CDS
CTCTCACTTGCACGCGTATG+CGG	0.471157	1_3:-75872835	Msa0141120:CDS
TAAGATATCAACGTAATCAT+TGG	0.471259	1_3:+75872600	None:intergenic
ATCCAATATTTGATTGGAGC+TGG	0.472360	1_3:-75873617	Msa0141120:CDS
AGTGGATCCCACCGAGGCTA+TGG	0.482931	1_3:-75872746	Msa0141120:CDS
ATGGAGATTGGAGAAGATTG+AGG	0.484391	1_3:-75872560	Msa0141120:CDS
GGCTATGGCCACCATAGCCT+CGG	0.489653	1_3:+75872735	None:intergenic
TCTCTTTAGCCAACCTACCT+AGG	0.494048	1_3:+75872866	None:intergenic
TTCACAAAATGTGTTGCCAT+TGG	0.497194	1_3:-75873987	Msa0141120:CDS
AAAACCACAAGATAATCATC+TGG	0.498146	1_3:+75873851	None:intergenic
AACTGGAAGAGCGTCTTGAT+GGG	0.500840	1_3:-75872474	Msa0141120:CDS
TTTATCCATGTTTGGTACGT+AGG	0.501588	1_3:+75873797	None:intergenic
CCTGCTCACTTGATGCATGA+TGG	0.509740	1_3:-75872685	Msa0141120:CDS
GTACGTAGGCAATGCTTCCT+CGG	0.510676	1_3:+75873811	None:intergenic
TCGGAAGGTAGTGATGAGTC+TGG	0.523237	1_3:+75873923	None:intergenic
ATCATATTACAACAAAGATC+AGG	0.525928	1_3:+75872249	None:intergenic
TCCCCTACAATGTTATCTAA+AGG	0.527355	1_3:-75874098	Msa0141120:CDS
GCTTCCAGATGATTATCTTG+TGG	0.527931	1_3:-75873855	Msa0141120:CDS
CCATCATGCATCAAGTGAGC+AGG	0.528607	1_3:+75872685	None:intergenic
TCTCACTTGCACGCGTATGC+GGG	0.529845	1_3:-75872834	Msa0141120:CDS
CCAAACATGGATAAACAAGT+TGG	0.530351	1_3:-75873789	Msa0141120:CDS
AAAACTTATCTATATCTCTC+CGG	0.537755	1_3:-75873671	Msa0141120:CDS
CATTGCCTACGTACCAAACA+TGG	0.538689	1_3:-75873802	Msa0141120:CDS
AAATGTGGCTCGCTCTTGAA+AGG	0.540932	1_3:+75872903	None:intergenic
TTAAACCTGTGGAGGAATGC+TGG	0.548548	1_3:-75873964	Msa0141120:CDS
CTCAGCCGTTCGATTTCTCA+GGG	0.548721	1_3:+75873877	None:intergenic
ATTGTAGGGGAGTCCACGCA+TGG	0.558263	1_3:+75874110	None:intergenic
ATAAACAAGTTGGATGGAGT+TGG	0.559959	1_3:-75873779	Msa0141120:CDS
CGCATACGCGTGCAAGTGAG+AGG	0.560592	1_3:+75872836	None:intergenic
GGATCCCACCGAGGCTATGG+TGG	0.562827	1_3:-75872743	Msa0141120:CDS
TGTGGAAAAGCTTCTAGAAG+TGG	0.566245	1_3:-75872764	Msa0141120:CDS
TGAGTTCATCCATCAAGTGC+AGG	0.567672	1_3:-75873900	Msa0141120:CDS
TCCTCCACAGGTTTAACCAA+TGG	0.568150	1_3:+75873971	None:intergenic
TATGGCCACCATAGCCTCGG+TGG	0.570103	1_3:+75872738	None:intergenic
ACATGGATAAACAAGTTGGA+TGG	0.572710	1_3:-75873785	Msa0141120:CDS
ATTGAGGGTTTGACAAGCGA+AGG	0.578019	1_3:-75872544	Msa0141120:CDS
TTGTTCATGGTGTAGGATGT+GGG	0.582554	1_3:-75872964	Msa0141120:intron
TTTATACAAAGACATAGTGT+AGG	0.582555	1_3:-75872342	Msa0141120:three_prime_UTR
ATATTTGATTGGAGCTGGCG+TGG	0.585908	1_3:-75873612	Msa0141120:intron
CATGCACATATCAACTCGAC+CGG	0.587049	1_3:+75873652	None:intergenic
CAACATTATGCACCCATGCG+TGG	0.592760	1_3:-75874123	Msa0141120:CDS
TGGTTCAAGTCTCACACCAT+GGG	0.600203	1_3:-75873747	Msa0141120:CDS
TAGAGTTCTTGATTAGACGA+TGG	0.605110	1_3:-75872579	Msa0141120:CDS
TTTGTGTCACACGGAAACCT+AGG	0.610294	1_3:-75872883	Msa0141120:CDS
ACACGGAAACCTAGGTAGGT+TGG	0.610946	1_3:-75872875	Msa0141120:CDS
CTGGTTCAAGTCTCACACCA+TGG	0.612232	1_3:-75873748	Msa0141120:CDS
CGAGCCACATTTGTGTCACA+CGG	0.618843	1_3:-75872892	Msa0141120:CDS
ATGGCCACCATAGCCTCGGT+GGG	0.619166	1_3:+75872739	None:intergenic
GCCTTTAGATAACATTGTAG+GGG	0.623075	1_3:+75874097	None:intergenic
GAGCGTGACCATATAGCCCA+TGG	0.625365	1_3:+75873731	None:intergenic
ACCGAAAACAACCCATACAT+GGG	0.628237	1_3:-75872940	Msa0141120:CDS
TATCAAATTAACAATGACGA+TGG	0.630822	1_3:-75874146	Msa0141120:exon
GCCATTGGTTAAACCTGTGG+AGG	0.632502	1_3:-75873972	Msa0141120:CDS
GGTAGGTTGGCTAAAGAGAG+AGG	0.635441	1_3:-75872862	Msa0141120:CDS
TGTACACAAAACCCATGTAT+GGG	0.636404	1_3:+75872929	None:intergenic
GAATGCATATGTGAGGATTG+TGG	0.642224	1_3:-75872782	Msa0141120:CDS
TGTCACACGGAAACCTAGGT+AGG	0.642596	1_3:-75872879	Msa0141120:CDS
TTGTAGGGGAGTCCACGCAT+GGG	0.642906	1_3:+75874111	None:intergenic
GTTGCCATTGGTTAAACCTG+TGG	0.644205	1_3:-75873975	Msa0141120:CDS
TGCAACTATAAAACTTCACA+AGG	0.648856	1_3:+75872399	None:intergenic
CATGCACAAGAGTTCGTGTG+TGG	0.649922	1_3:-75872517	Msa0141120:CDS
GAGTCTGGCAACAAATTATG+TGG	0.650290	1_3:+75873938	None:intergenic
GCAGGCCCTGAGAAATCGAA+CGG	0.653102	1_3:-75873882	Msa0141120:CDS
CACTTGATGGATGAACTCAT+CGG	0.663477	1_3:+75873904	None:intergenic
GTCACGAGAATGCATATGTG+AGG	0.664895	1_3:-75872789	Msa0141120:CDS
ACCGCTGAAGAAAATAGACA+TGG	0.664992	1_3:-75873704	Msa0141120:CDS
CTCGTGACGCTTCTCATCAG+CGG	0.665409	1_3:+75872804	None:intergenic
TGATGGATGAACTCATCGGA+AGG	0.673548	1_3:+75873908	None:intergenic
GTTTCCGTGTGACACAAATG+TGG	0.677033	1_3:+75872888	None:intergenic
TGGCCATAGCCAAAATGATG+CGG	0.688297	1_3:-75872723	Msa0141120:CDS
TCTAGAAGTGGATCCCACCG+AGG	0.721401	1_3:-75872752	Msa0141120:CDS
GGTCGGTGGCTTGATCACCG+AGG	0.746193	1_3:-75873828	Msa0141120:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATTTATGAAAAATGTTATT+TGG	+	chr1_3:75873403-75873422	None:intergenic	10.0%
!!	AATTTATGAAAAATGTTATT+TGG	+	chr1_3:75873403-75873422	None:intergenic	10.0%
!!	TAATAAATCATATTTGTGTA+TGG	+	chr1_3:75873093-75873112	None:intergenic	15.0%
!!	ATAAATTAATTGATTGTTCA+TGG	-	chr1_3:75873416-75873435	Msa0141120:intron	15.0%
!!	TAATAAATCATATTTGTGTA+TGG	+	chr1_3:75873093-75873112	None:intergenic	15.0%
!!	ATAAATTAATTGATTGTTCA+TGG	-	chr1_3:75873416-75873435	Msa0141120:intron	15.0%
!!	TAATGACAATGCATAATATA+TGG	-	chr1_3:75873210-75873229	Msa0141120:intron	20.0%
!!	AATGACAATGCATAATATAT+GGG	-	chr1_3:75873211-75873230	Msa0141120:intron	20.0%
!!	AACGACTATTAAAAAAATAG+TGG	+	chr1_3:75873274-75873293	None:intergenic	20.0%
!!	TAATGACAATGCATAATATA+TGG	-	chr1_3:75873210-75873229	Msa0141120:intron	20.0%
!!	AATGACAATGCATAATATAT+GGG	-	chr1_3:75873211-75873230	Msa0141120:intron	20.0%
!!	AACGACTATTAAAAAAATAG+TGG	+	chr1_3:75873274-75873293	None:intergenic	20.0%
!	TATCAAATTAACAATGACGA+TGG	-	chr1_3:75872247-75872266	Msa0141120:three_prime_UTR	25.0%
!	AAAACTTATCTATATCTCTC+CGG	-	chr1_3:75872722-75872741	Msa0141120:CDS	25.0%
!	AAGACTATCCAATATTTGAT+TGG	-	chr1_3:75872770-75872789	Msa0141120:CDS	25.0%
!!!	ATTTGTTATTCTCGTTAGTT+TGG	+	chr1_3:75872995-75873014	None:intergenic	25.0%
!	ATGACAATGCATAATATATG+GGG	-	chr1_3:75873212-75873231	Msa0141120:intron	25.0%
!	TAAGATGTGATAGATAGAAT+AGG	+	chr1_3:75873343-75873362	None:intergenic	25.0%
!!	TATTTCTATTTCTTTCTCCT+TGG	-	chr1_3:75873361-75873380	Msa0141120:intron	25.0%
!	TAAGATATCAACGTAATCAT+TGG	+	chr1_3:75873796-75873815	None:intergenic	25.0%
!	TTTATACAAAGACATAGTGT+AGG	-	chr1_3:75874051-75874070	Msa0141120:CDS	25.0%
!	ATCATATTACAACAAAGATC+AGG	+	chr1_3:75874147-75874166	None:intergenic	25.0%
!	TATCAAATTAACAATGACGA+TGG	-	chr1_3:75872247-75872266	Msa0141120:three_prime_UTR	25.0%
!	AAAACTTATCTATATCTCTC+CGG	-	chr1_3:75872722-75872741	Msa0141120:CDS	25.0%
!	AAGACTATCCAATATTTGAT+TGG	-	chr1_3:75872770-75872789	Msa0141120:CDS	25.0%
!!!	ATTTGTTATTCTCGTTAGTT+TGG	+	chr1_3:75872995-75873014	None:intergenic	25.0%
!	ATGACAATGCATAATATATG+GGG	-	chr1_3:75873212-75873231	Msa0141120:intron	25.0%
!	TAAGATGTGATAGATAGAAT+AGG	+	chr1_3:75873343-75873362	None:intergenic	25.0%
!!	TATTTCTATTTCTTTCTCCT+TGG	-	chr1_3:75873361-75873380	Msa0141120:intron	25.0%
!	TAAGATATCAACGTAATCAT+TGG	+	chr1_3:75873796-75873815	None:intergenic	25.0%
!	TTTATACAAAGACATAGTGT+AGG	-	chr1_3:75874051-75874070	Msa0141120:CDS	25.0%
!	ATCATATTACAACAAAGATC+AGG	+	chr1_3:75874147-75874166	None:intergenic	25.0%
!!	TTTTAGGAATGTTTTGGATG+GGG	+	chr1_3:75872321-75872340	None:intergenic	30.0%
!!!	GTTTTAGGAATGTTTTGGAT+GGG	+	chr1_3:75872322-75872341	None:intergenic	30.0%
!	TTGAACACTTCTTTCTTTTC+AGG	+	chr1_3:75872368-75872387	None:intergenic	30.0%
	TGTTCAAATCACTAGAGAAA+TGG	-	chr1_3:75872381-75872400	Msa0141120:three_prime_UTR	30.0%
	GTTCAAATCACTAGAGAAAT+GGG	-	chr1_3:75872382-75872401	Msa0141120:three_prime_UTR	30.0%
	AAAACCACAAGATAATCATC+TGG	+	chr1_3:75872545-75872564	None:intergenic	30.0%
!	AGATGATTATCTTGTGGTTT+TGG	-	chr1_3:75872544-75872563	Msa0141120:CDS	30.0%
	ACATATACATGCACACAATA+TGG	-	chr1_3:75872842-75872861	Msa0141120:CDS	30.0%
	TGACAATGCATAATATATGG+GGG	-	chr1_3:75873213-75873232	Msa0141120:intron	30.0%
	ATGTGATAGATAGAATAGGT+TGG	+	chr1_3:75873339-75873358	None:intergenic	30.0%
	TAATTGATTGTTCATGGTGT+AGG	-	chr1_3:75873422-75873441	Msa0141120:intron	30.0%
	TGCAACTATAAAACTTCACA+AGG	+	chr1_3:75873997-75874016	None:intergenic	30.0%
!!	TTTTAGGAATGTTTTGGATG+GGG	+	chr1_3:75872321-75872340	None:intergenic	30.0%
!!!	GTTTTAGGAATGTTTTGGAT+GGG	+	chr1_3:75872322-75872341	None:intergenic	30.0%
!	TTGAACACTTCTTTCTTTTC+AGG	+	chr1_3:75872368-75872387	None:intergenic	30.0%
	TGTTCAAATCACTAGAGAAA+TGG	-	chr1_3:75872381-75872400	Msa0141120:three_prime_UTR	30.0%
	GTTCAAATCACTAGAGAAAT+GGG	-	chr1_3:75872382-75872401	Msa0141120:three_prime_UTR	30.0%
	AAAACCACAAGATAATCATC+TGG	+	chr1_3:75872545-75872564	None:intergenic	30.0%
!	AGATGATTATCTTGTGGTTT+TGG	-	chr1_3:75872544-75872563	Msa0141120:CDS	30.0%
	ACATATACATGCACACAATA+TGG	-	chr1_3:75872842-75872861	Msa0141120:CDS	30.0%
	TGACAATGCATAATATATGG+GGG	-	chr1_3:75873213-75873232	Msa0141120:intron	30.0%
	ATGTGATAGATAGAATAGGT+TGG	+	chr1_3:75873339-75873358	None:intergenic	30.0%
	TAATTGATTGTTCATGGTGT+AGG	-	chr1_3:75873422-75873441	Msa0141120:intron	30.0%
	TGCAACTATAAAACTTCACA+AGG	+	chr1_3:75873997-75874016	None:intergenic	30.0%
	TCCCCTACAATGTTATCTAA+AGG	-	chr1_3:75872295-75872314	Msa0141120:three_prime_UTR	35.0%
	GCCTTTAGATAACATTGTAG+GGG	+	chr1_3:75872299-75872318	None:intergenic	35.0%
	GGCCTTTAGATAACATTGTA+GGG	+	chr1_3:75872300-75872319	None:intergenic	35.0%
!!!	GGTTTTAGGAATGTTTTGGA+TGG	+	chr1_3:75872323-75872342	None:intergenic	35.0%
!!!	TTGGGGTTTTAGGAATGTTT+TGG	+	chr1_3:75872327-75872346	None:intergenic	35.0%
!	AGACATTGAGTGTGTCTTTT+GGG	+	chr1_3:75872345-75872364	None:intergenic	35.0%
	TTCACAAAATGTGTTGCCAT+TGG	-	chr1_3:75872406-75872425	Msa0141120:exon	35.0%
!!!	GATTATCTTGTGGTTTTGGT+CGG	-	chr1_3:75872548-75872567	Msa0141120:CDS	35.0%
	TTTATCCATGTTTGGTACGT+AGG	+	chr1_3:75872599-75872618	None:intergenic	35.0%
!	CCAACTTGTTTATCCATGTT+TGG	+	chr1_3:75872607-75872626	None:intergenic	35.0%
	CCAAACATGGATAAACAAGT+TGG	-	chr1_3:75872604-75872623	Msa0141120:CDS	35.0%
!	ACATGGATAAACAAGTTGGA+TGG	-	chr1_3:75872608-75872627	Msa0141120:CDS	35.0%
!	ATAAACAAGTTGGATGGAGT+TGG	-	chr1_3:75872614-75872633	Msa0141120:CDS	35.0%
!	TCCATGTCTATTTTCTTCAG+CGG	+	chr1_3:75872693-75872712	None:intergenic	35.0%
	ATCCAATATTTGATTGGAGC+TGG	-	chr1_3:75872776-75872795	Msa0141120:CDS	35.0%
!	CGTTAGTTTGGCAAATGTAT+TGG	+	chr1_3:75872983-75873002	None:intergenic	35.0%
	GACAATGCATAATATATGGG+GGG	-	chr1_3:75873214-75873233	Msa0141120:intron	35.0%
	ACAATGCATAATATATGGGG+GGG	-	chr1_3:75873215-75873234	Msa0141120:intron	35.0%
!	AGTGGTGTCTTTTCTTTTTG+CGG	+	chr1_3:75873256-75873275	None:intergenic	35.0%
!	TTCTATTTCTTTCTCCTTGG+AGG	-	chr1_3:75873364-75873383	Msa0141120:intron	35.0%
!	TCTATTTCTTTCTCCTTGGA+GGG	-	chr1_3:75873365-75873384	Msa0141120:intron	35.0%
	TGTACACAAAACCCATGTAT+GGG	+	chr1_3:75873467-75873486	None:intergenic	35.0%
	TAGAGTTCTTGATTAGACGA+TGG	-	chr1_3:75873814-75873833	Msa0141120:CDS	35.0%
	TCTTCCAGTTTCCTTAATCT+AGG	+	chr1_3:75873909-75873928	None:intergenic	35.0%
	AGATCAACCACAAATTCTCT+TGG	-	chr1_3:75873952-75873971	Msa0141120:CDS	35.0%
	TGAAGATCCAAGAGAATTTG+TGG	+	chr1_3:75873962-75873981	None:intergenic	35.0%
	TCCCCTACAATGTTATCTAA+AGG	-	chr1_3:75872295-75872314	Msa0141120:three_prime_UTR	35.0%
	GCCTTTAGATAACATTGTAG+GGG	+	chr1_3:75872299-75872318	None:intergenic	35.0%
	GGCCTTTAGATAACATTGTA+GGG	+	chr1_3:75872300-75872319	None:intergenic	35.0%
!!!	GGTTTTAGGAATGTTTTGGA+TGG	+	chr1_3:75872323-75872342	None:intergenic	35.0%
!!!	TTGGGGTTTTAGGAATGTTT+TGG	+	chr1_3:75872327-75872346	None:intergenic	35.0%
!	AGACATTGAGTGTGTCTTTT+GGG	+	chr1_3:75872345-75872364	None:intergenic	35.0%
	TTCACAAAATGTGTTGCCAT+TGG	-	chr1_3:75872406-75872425	Msa0141120:exon	35.0%
!!!	GATTATCTTGTGGTTTTGGT+CGG	-	chr1_3:75872548-75872567	Msa0141120:CDS	35.0%
	TTTATCCATGTTTGGTACGT+AGG	+	chr1_3:75872599-75872618	None:intergenic	35.0%
!	CCAACTTGTTTATCCATGTT+TGG	+	chr1_3:75872607-75872626	None:intergenic	35.0%
	CCAAACATGGATAAACAAGT+TGG	-	chr1_3:75872604-75872623	Msa0141120:CDS	35.0%
!	ACATGGATAAACAAGTTGGA+TGG	-	chr1_3:75872608-75872627	Msa0141120:CDS	35.0%
!	ATAAACAAGTTGGATGGAGT+TGG	-	chr1_3:75872614-75872633	Msa0141120:CDS	35.0%
!	TCCATGTCTATTTTCTTCAG+CGG	+	chr1_3:75872693-75872712	None:intergenic	35.0%
	ATCCAATATTTGATTGGAGC+TGG	-	chr1_3:75872776-75872795	Msa0141120:CDS	35.0%
!	CGTTAGTTTGGCAAATGTAT+TGG	+	chr1_3:75872983-75873002	None:intergenic	35.0%
	GACAATGCATAATATATGGG+GGG	-	chr1_3:75873214-75873233	Msa0141120:intron	35.0%
	ACAATGCATAATATATGGGG+GGG	-	chr1_3:75873215-75873234	Msa0141120:intron	35.0%
!	AGTGGTGTCTTTTCTTTTTG+CGG	+	chr1_3:75873256-75873275	None:intergenic	35.0%
!	TTCTATTTCTTTCTCCTTGG+AGG	-	chr1_3:75873364-75873383	Msa0141120:intron	35.0%
!	TCTATTTCTTTCTCCTTGGA+GGG	-	chr1_3:75873365-75873384	Msa0141120:intron	35.0%
	TGTACACAAAACCCATGTAT+GGG	+	chr1_3:75873467-75873486	None:intergenic	35.0%
	TAGAGTTCTTGATTAGACGA+TGG	-	chr1_3:75873814-75873833	Msa0141120:CDS	35.0%
	TCTTCCAGTTTCCTTAATCT+AGG	+	chr1_3:75873909-75873928	None:intergenic	35.0%
	AGATCAACCACAAATTCTCT+TGG	-	chr1_3:75873952-75873971	Msa0141120:CDS	35.0%
	TGAAGATCCAAGAGAATTTG+TGG	+	chr1_3:75873962-75873981	None:intergenic	35.0%
	GGGCCTTTAGATAACATTGT+AGG	+	chr1_3:75872301-75872320	None:intergenic	40.0%
!!!	AGTGTGTCTTTTGGGGTTTT+AGG	+	chr1_3:75872337-75872356	None:intergenic	40.0%
!	GACATTGAGTGTGTCTTTTG+GGG	+	chr1_3:75872344-75872363	None:intergenic	40.0%
!	GAGACATTGAGTGTGTCTTT+TGG	+	chr1_3:75872346-75872365	None:intergenic	40.0%
	GAGTCTGGCAACAAATTATG+TGG	+	chr1_3:75872458-75872477	None:intergenic	40.0%
!	CACTTGATGGATGAACTCAT+CGG	+	chr1_3:75872492-75872511	None:intergenic	40.0%
	GCTTCCAGATGATTATCTTG+TGG	-	chr1_3:75872538-75872557	Msa0141120:CDS	40.0%
	ACCGCTGAAGAAAATAGACA+TGG	-	chr1_3:75872689-75872708	Msa0141120:CDS	40.0%
	AGCTCACGAGGACAAAATAT+AGG	+	chr1_3:75873178-75873197	None:intergenic	40.0%
!	CTATTTCTTTCTCCTTGGAG+GGG	-	chr1_3:75873366-75873385	Msa0141120:intron	40.0%
	ATTGTTCATGGTGTAGGATG+TGG	-	chr1_3:75873428-75873447	Msa0141120:intron	40.0%
	TTGTTCATGGTGTAGGATGT+GGG	-	chr1_3:75873429-75873448	Msa0141120:intron	40.0%
	TACCGAAAACAACCCATACA+TGG	-	chr1_3:75873452-75873471	Msa0141120:intron	40.0%
	ACCGAAAACAACCCATACAT+GGG	-	chr1_3:75873453-75873472	Msa0141120:intron	40.0%
!!	ACCCATGTATGGGTTGTTTT+CGG	+	chr1_3:75873457-75873476	None:intergenic	40.0%
	GTGTACACAAAACCCATGTA+TGG	+	chr1_3:75873468-75873487	None:intergenic	40.0%
	GAATGCATATGTGAGGATTG+TGG	-	chr1_3:75873611-75873630	Msa0141120:intron	40.0%
!	TGTGGAAAAGCTTCTAGAAG+TGG	-	chr1_3:75873629-75873648	Msa0141120:CDS	40.0%
!	AATCTTGTGCCGCATCATTT+TGG	+	chr1_3:75873682-75873701	None:intergenic	40.0%
!	AAAAATGATCGAAGAGGCGT+GGG	+	chr1_3:75873740-75873759	None:intergenic	40.0%
	CTGCAGAAAAATGATCGAAG+AGG	+	chr1_3:75873746-75873765	None:intergenic	40.0%
!!	CTTCGATCATTTTTCTGCAG+TGG	-	chr1_3:75873746-75873765	Msa0141120:CDS	40.0%
	CTTGATTAGACGATGGAGAT+TGG	-	chr1_3:75873821-75873840	Msa0141120:CDS	40.0%
	ATGGAGATTGGAGAAGATTG+AGG	-	chr1_3:75873833-75873852	Msa0141120:CDS	40.0%
	TGGAGATTGGAGAAGATTGA+GGG	-	chr1_3:75873834-75873853	Msa0141120:CDS	40.0%
	TGCACCTAGATTAAGGAAAC+TGG	-	chr1_3:75873902-75873921	Msa0141120:CDS	40.0%
	GGGCCTTTAGATAACATTGT+AGG	+	chr1_3:75872301-75872320	None:intergenic	40.0%
!!!	AGTGTGTCTTTTGGGGTTTT+AGG	+	chr1_3:75872337-75872356	None:intergenic	40.0%
!	GACATTGAGTGTGTCTTTTG+GGG	+	chr1_3:75872344-75872363	None:intergenic	40.0%
!	GAGACATTGAGTGTGTCTTT+TGG	+	chr1_3:75872346-75872365	None:intergenic	40.0%
	GAGTCTGGCAACAAATTATG+TGG	+	chr1_3:75872458-75872477	None:intergenic	40.0%
!	CACTTGATGGATGAACTCAT+CGG	+	chr1_3:75872492-75872511	None:intergenic	40.0%
	GCTTCCAGATGATTATCTTG+TGG	-	chr1_3:75872538-75872557	Msa0141120:CDS	40.0%
	ACCGCTGAAGAAAATAGACA+TGG	-	chr1_3:75872689-75872708	Msa0141120:CDS	40.0%
	AGCTCACGAGGACAAAATAT+AGG	+	chr1_3:75873178-75873197	None:intergenic	40.0%
!	CTATTTCTTTCTCCTTGGAG+GGG	-	chr1_3:75873366-75873385	Msa0141120:intron	40.0%
	ATTGTTCATGGTGTAGGATG+TGG	-	chr1_3:75873428-75873447	Msa0141120:intron	40.0%
	TTGTTCATGGTGTAGGATGT+GGG	-	chr1_3:75873429-75873448	Msa0141120:intron	40.0%
	TACCGAAAACAACCCATACA+TGG	-	chr1_3:75873452-75873471	Msa0141120:intron	40.0%
	ACCGAAAACAACCCATACAT+GGG	-	chr1_3:75873453-75873472	Msa0141120:intron	40.0%
!!	ACCCATGTATGGGTTGTTTT+CGG	+	chr1_3:75873457-75873476	None:intergenic	40.0%
	GTGTACACAAAACCCATGTA+TGG	+	chr1_3:75873468-75873487	None:intergenic	40.0%
	GAATGCATATGTGAGGATTG+TGG	-	chr1_3:75873611-75873630	Msa0141120:intron	40.0%
!	TGTGGAAAAGCTTCTAGAAG+TGG	-	chr1_3:75873629-75873648	Msa0141120:CDS	40.0%
!	AATCTTGTGCCGCATCATTT+TGG	+	chr1_3:75873682-75873701	None:intergenic	40.0%
!	AAAAATGATCGAAGAGGCGT+GGG	+	chr1_3:75873740-75873759	None:intergenic	40.0%
	CTGCAGAAAAATGATCGAAG+AGG	+	chr1_3:75873746-75873765	None:intergenic	40.0%
!!	CTTCGATCATTTTTCTGCAG+TGG	-	chr1_3:75873746-75873765	Msa0141120:CDS	40.0%
	CTTGATTAGACGATGGAGAT+TGG	-	chr1_3:75873821-75873840	Msa0141120:CDS	40.0%
	ATGGAGATTGGAGAAGATTG+AGG	-	chr1_3:75873833-75873852	Msa0141120:CDS	40.0%
	TGGAGATTGGAGAAGATTGA+GGG	-	chr1_3:75873834-75873853	Msa0141120:CDS	40.0%
	TGCACCTAGATTAAGGAAAC+TGG	-	chr1_3:75873902-75873921	Msa0141120:CDS	40.0%
!	GTTGCCATTGGTTAAACCTG+TGG	-	chr1_3:75872418-75872437	Msa0141120:CDS	45.0%
	TCCTCCACAGGTTTAACCAA+TGG	+	chr1_3:75872425-75872444	None:intergenic	45.0%
	TTAAACCTGTGGAGGAATGC+TGG	-	chr1_3:75872429-75872448	Msa0141120:CDS	45.0%
!	TGATGGATGAACTCATCGGA+AGG	+	chr1_3:75872488-75872507	None:intergenic	45.0%
	TGAGTTCATCCATCAAGTGC+AGG	-	chr1_3:75872493-75872512	Msa0141120:CDS	45.0%
!!!	TATCTTGTGGTTTTGGTCGG+TGG	-	chr1_3:75872551-75872570	Msa0141120:CDS	45.0%
	CATTGCCTACGTACCAAACA+TGG	-	chr1_3:75872591-75872610	Msa0141120:CDS	45.0%
	TGGTTCAAGTCTCACACCAT+GGG	-	chr1_3:75872646-75872665	Msa0141120:CDS	45.0%
	CATGCACATATCAACTCGAC+CGG	+	chr1_3:75872744-75872763	None:intergenic	45.0%
	CGCCAGCTCCAATCAAATAT+TGG	+	chr1_3:75872781-75872800	None:intergenic	45.0%
	ATATTTGATTGGAGCTGGCG+TGG	-	chr1_3:75872781-75872800	Msa0141120:CDS	45.0%
	TGCACTCGTAACACGTATGT+GGG	+	chr1_3:75873061-75873080	None:intergenic	45.0%
	ATATGGGGGGGTTCAAATCT+CGG	-	chr1_3:75873227-75873246	Msa0141120:intron	45.0%
!	GGTGTCTTTTCTTTTTGCGG+TGG	+	chr1_3:75873253-75873272	None:intergenic	45.0%
	AAATGTGGCTCGCTCTTGAA+AGG	+	chr1_3:75873493-75873512	None:intergenic	45.0%
	GTTTCCGTGTGACACAAATG+TGG	+	chr1_3:75873508-75873527	None:intergenic	45.0%
	TTTGTGTCACACGGAAACCT+AGG	-	chr1_3:75873510-75873529	Msa0141120:intron	45.0%
	TCTCTTTAGCCAACCTACCT+AGG	+	chr1_3:75873530-75873549	None:intergenic	45.0%
	GTCACGAGAATGCATATGTG+AGG	-	chr1_3:75873604-75873623	Msa0141120:intron	45.0%
	TGGCCATAGCCAAAATGATG+CGG	-	chr1_3:75873670-75873689	Msa0141120:CDS	45.0%
	GAAAAATGATCGAAGAGGCG+TGG	+	chr1_3:75873741-75873760	None:intergenic	45.0%
	ATTGAGGGTTTGACAAGCGA+AGG	-	chr1_3:75873849-75873868	Msa0141120:CDS	45.0%
	GTGGACTTGCACCTAGATTA+AGG	-	chr1_3:75873895-75873914	Msa0141120:CDS	45.0%
!!	AAACTGGAAGAGCGTCTTGA+TGG	-	chr1_3:75873918-75873937	Msa0141120:CDS	45.0%
!!	AACTGGAAGAGCGTCTTGAT+GGG	-	chr1_3:75873919-75873938	Msa0141120:CDS	45.0%
!	GTTGCCATTGGTTAAACCTG+TGG	-	chr1_3:75872418-75872437	Msa0141120:CDS	45.0%
	TCCTCCACAGGTTTAACCAA+TGG	+	chr1_3:75872425-75872444	None:intergenic	45.0%
	TTAAACCTGTGGAGGAATGC+TGG	-	chr1_3:75872429-75872448	Msa0141120:CDS	45.0%
!	TGATGGATGAACTCATCGGA+AGG	+	chr1_3:75872488-75872507	None:intergenic	45.0%
	TGAGTTCATCCATCAAGTGC+AGG	-	chr1_3:75872493-75872512	Msa0141120:CDS	45.0%
!!!	TATCTTGTGGTTTTGGTCGG+TGG	-	chr1_3:75872551-75872570	Msa0141120:CDS	45.0%
	CATTGCCTACGTACCAAACA+TGG	-	chr1_3:75872591-75872610	Msa0141120:CDS	45.0%
	TGGTTCAAGTCTCACACCAT+GGG	-	chr1_3:75872646-75872665	Msa0141120:CDS	45.0%
	CATGCACATATCAACTCGAC+CGG	+	chr1_3:75872744-75872763	None:intergenic	45.0%
	CGCCAGCTCCAATCAAATAT+TGG	+	chr1_3:75872781-75872800	None:intergenic	45.0%
	ATATTTGATTGGAGCTGGCG+TGG	-	chr1_3:75872781-75872800	Msa0141120:CDS	45.0%
	TGCACTCGTAACACGTATGT+GGG	+	chr1_3:75873061-75873080	None:intergenic	45.0%
	ATATGGGGGGGTTCAAATCT+CGG	-	chr1_3:75873227-75873246	Msa0141120:intron	45.0%
!	GGTGTCTTTTCTTTTTGCGG+TGG	+	chr1_3:75873253-75873272	None:intergenic	45.0%
	AAATGTGGCTCGCTCTTGAA+AGG	+	chr1_3:75873493-75873512	None:intergenic	45.0%
	GTTTCCGTGTGACACAAATG+TGG	+	chr1_3:75873508-75873527	None:intergenic	45.0%
	TTTGTGTCACACGGAAACCT+AGG	-	chr1_3:75873510-75873529	Msa0141120:intron	45.0%
	TCTCTTTAGCCAACCTACCT+AGG	+	chr1_3:75873530-75873549	None:intergenic	45.0%
	GTCACGAGAATGCATATGTG+AGG	-	chr1_3:75873604-75873623	Msa0141120:intron	45.0%
	TGGCCATAGCCAAAATGATG+CGG	-	chr1_3:75873670-75873689	Msa0141120:CDS	45.0%
	GAAAAATGATCGAAGAGGCG+TGG	+	chr1_3:75873741-75873760	None:intergenic	45.0%
	ATTGAGGGTTTGACAAGCGA+AGG	-	chr1_3:75873849-75873868	Msa0141120:CDS	45.0%
	GTGGACTTGCACCTAGATTA+AGG	-	chr1_3:75873895-75873914	Msa0141120:CDS	45.0%
!!	AAACTGGAAGAGCGTCTTGA+TGG	-	chr1_3:75873918-75873937	Msa0141120:CDS	45.0%
!!	AACTGGAAGAGCGTCTTGAT+GGG	-	chr1_3:75873919-75873938	Msa0141120:CDS	45.0%
	CAACATTATGCACCCATGCG+TGG	-	chr1_3:75872270-75872289	Msa0141120:three_prime_UTR	50.0%
!	GCCATTGGTTAAACCTGTGG+AGG	-	chr1_3:75872421-75872440	Msa0141120:CDS	50.0%
	TCGGAAGGTAGTGATGAGTC+TGG	+	chr1_3:75872473-75872492	None:intergenic	50.0%
	CTCAGCCGTTCGATTTCTCA+GGG	+	chr1_3:75872519-75872538	None:intergenic	50.0%
	GTACGTAGGCAATGCTTCCT+CGG	+	chr1_3:75872585-75872604	None:intergenic	50.0%
	CTGGTTCAAGTCTCACACCA+TGG	-	chr1_3:75872645-75872664	Msa0141120:CDS	50.0%
!	GTCTCACACCATGGGCTATA+TGG	-	chr1_3:75872654-75872673	Msa0141120:CDS	50.0%
	CTGCACTCGTAACACGTATG+TGG	+	chr1_3:75873062-75873081	None:intergenic	50.0%
	CACATACGTGTTACGAGTGC+AGG	-	chr1_3:75873060-75873079	Msa0141120:intron	50.0%
	CCAACTGAGTTAAGCTCACG+AGG	+	chr1_3:75873190-75873209	None:intergenic	50.0%
	CCTCGTGAGCTTAACTCAGT+TGG	-	chr1_3:75873187-75873206	Msa0141120:intron	50.0%
	GACATATGCATACCCCTCCA+AGG	+	chr1_3:75873381-75873400	None:intergenic	50.0%
	CGAGCCACATTTGTGTCACA+CGG	-	chr1_3:75873501-75873520	Msa0141120:intron	50.0%
	TGTCACACGGAAACCTAGGT+AGG	-	chr1_3:75873514-75873533	Msa0141120:intron	50.0%
	ACACGGAAACCTAGGTAGGT+TGG	-	chr1_3:75873518-75873537	Msa0141120:intron	50.0%
!	GGTAGGTTGGCTAAAGAGAG+AGG	-	chr1_3:75873531-75873550	Msa0141120:intron	50.0%
!!!	GTGCCGCATCATTTTGGCTA+TGG	+	chr1_3:75873676-75873695	None:intergenic	50.0%
	CCATCATGCATCAAGTGAGC+AGG	+	chr1_3:75873711-75873730	None:intergenic	50.0%
	CCTGCTCACTTGATGCATGA+TGG	-	chr1_3:75873708-75873727	Msa0141120:CDS	50.0%
	CATGCACAAGAGTTCGTGTG+TGG	-	chr1_3:75873876-75873895	Msa0141120:CDS	50.0%
	CAACATTATGCACCCATGCG+TGG	-	chr1_3:75872270-75872289	Msa0141120:three_prime_UTR	50.0%
!	GCCATTGGTTAAACCTGTGG+AGG	-	chr1_3:75872421-75872440	Msa0141120:CDS	50.0%
	TCGGAAGGTAGTGATGAGTC+TGG	+	chr1_3:75872473-75872492	None:intergenic	50.0%
	CTCAGCCGTTCGATTTCTCA+GGG	+	chr1_3:75872519-75872538	None:intergenic	50.0%
	GTACGTAGGCAATGCTTCCT+CGG	+	chr1_3:75872585-75872604	None:intergenic	50.0%
	CTGGTTCAAGTCTCACACCA+TGG	-	chr1_3:75872645-75872664	Msa0141120:CDS	50.0%
!	GTCTCACACCATGGGCTATA+TGG	-	chr1_3:75872654-75872673	Msa0141120:CDS	50.0%
	CTGCACTCGTAACACGTATG+TGG	+	chr1_3:75873062-75873081	None:intergenic	50.0%
	CACATACGTGTTACGAGTGC+AGG	-	chr1_3:75873060-75873079	Msa0141120:intron	50.0%
	CCAACTGAGTTAAGCTCACG+AGG	+	chr1_3:75873190-75873209	None:intergenic	50.0%
	CCTCGTGAGCTTAACTCAGT+TGG	-	chr1_3:75873187-75873206	Msa0141120:intron	50.0%
	GACATATGCATACCCCTCCA+AGG	+	chr1_3:75873381-75873400	None:intergenic	50.0%
	CGAGCCACATTTGTGTCACA+CGG	-	chr1_3:75873501-75873520	Msa0141120:intron	50.0%
	TGTCACACGGAAACCTAGGT+AGG	-	chr1_3:75873514-75873533	Msa0141120:intron	50.0%
	ACACGGAAACCTAGGTAGGT+TGG	-	chr1_3:75873518-75873537	Msa0141120:intron	50.0%
!	GGTAGGTTGGCTAAAGAGAG+AGG	-	chr1_3:75873531-75873550	Msa0141120:intron	50.0%
!!!	GTGCCGCATCATTTTGGCTA+TGG	+	chr1_3:75873676-75873695	None:intergenic	50.0%
	CCATCATGCATCAAGTGAGC+AGG	+	chr1_3:75873711-75873730	None:intergenic	50.0%
	CCTGCTCACTTGATGCATGA+TGG	-	chr1_3:75873708-75873727	Msa0141120:CDS	50.0%
	CATGCACAAGAGTTCGTGTG+TGG	-	chr1_3:75873876-75873895	Msa0141120:CDS	50.0%
	TTGTAGGGGAGTCCACGCAT+GGG	+	chr1_3:75872285-75872304	None:intergenic	55.0%
	ATTGTAGGGGAGTCCACGCA+TGG	+	chr1_3:75872286-75872305	None:intergenic	55.0%
	TTCTCAGGGCCTGCACTTGA+TGG	+	chr1_3:75872505-75872524	None:intergenic	55.0%
	GCAGGCCCTGAGAAATCGAA+CGG	-	chr1_3:75872511-75872530	Msa0141120:CDS	55.0%
	GCTCAGCCGTTCGATTTCTC+AGG	+	chr1_3:75872520-75872539	None:intergenic	55.0%
	GAGCGTGACCATATAGCCCA+TGG	+	chr1_3:75872665-75872684	None:intergenic	55.0%
	GGGCTATATGGTCACGCTCT+TGG	-	chr1_3:75872666-75872685	Msa0141120:CDS	55.0%
	CTCTCACTTGCACGCGTATG+CGG	-	chr1_3:75873558-75873577	Msa0141120:intron	55.0%
	TCTCACTTGCACGCGTATGC+GGG	-	chr1_3:75873559-75873578	Msa0141120:intron	55.0%
	CTCGTGACGCTTCTCATCAG+CGG	+	chr1_3:75873592-75873611	None:intergenic	55.0%
	TCTAGAAGTGGATCCCACCG+AGG	-	chr1_3:75873641-75873660	Msa0141120:CDS	55.0%
	TCTGCAGTGGCACAGCGTAT+TGG	-	chr1_3:75873759-75873778	Msa0141120:CDS	55.0%
	TTGTAGGGGAGTCCACGCAT+GGG	+	chr1_3:75872285-75872304	None:intergenic	55.0%
	ATTGTAGGGGAGTCCACGCA+TGG	+	chr1_3:75872286-75872305	None:intergenic	55.0%
	TTCTCAGGGCCTGCACTTGA+TGG	+	chr1_3:75872505-75872524	None:intergenic	55.0%
	GCAGGCCCTGAGAAATCGAA+CGG	-	chr1_3:75872511-75872530	Msa0141120:CDS	55.0%
	GCTCAGCCGTTCGATTTCTC+AGG	+	chr1_3:75872520-75872539	None:intergenic	55.0%
	GAGCGTGACCATATAGCCCA+TGG	+	chr1_3:75872665-75872684	None:intergenic	55.0%
	GGGCTATATGGTCACGCTCT+TGG	-	chr1_3:75872666-75872685	Msa0141120:CDS	55.0%
	CTCTCACTTGCACGCGTATG+CGG	-	chr1_3:75873558-75873577	Msa0141120:intron	55.0%
	TCTCACTTGCACGCGTATGC+GGG	-	chr1_3:75873559-75873578	Msa0141120:intron	55.0%
	CTCGTGACGCTTCTCATCAG+CGG	+	chr1_3:75873592-75873611	None:intergenic	55.0%
	TCTAGAAGTGGATCCCACCG+AGG	-	chr1_3:75873641-75873660	Msa0141120:CDS	55.0%
	TCTGCAGTGGCACAGCGTAT+TGG	-	chr1_3:75873759-75873778	Msa0141120:CDS	55.0%
	GATGGAGTTGGCGACGAGAC+TGG	-	chr1_3:75872626-75872645	Msa0141120:CDS	60.0%
	CGCATACGCGTGCAAGTGAG+AGG	+	chr1_3:75873560-75873579	None:intergenic	60.0%
	AGTGGATCCCACCGAGGCTA+TGG	-	chr1_3:75873647-75873666	Msa0141120:CDS	60.0%
	ATGGCCACCATAGCCTCGGT+GGG	+	chr1_3:75873657-75873676	None:intergenic	60.0%
	TATGGCCACCATAGCCTCGG+TGG	+	chr1_3:75873658-75873677	None:intergenic	60.0%
	GGCTATGGCCACCATAGCCT+CGG	+	chr1_3:75873661-75873680	None:intergenic	60.0%
	GATGGAGTTGGCGACGAGAC+TGG	-	chr1_3:75872626-75872645	Msa0141120:CDS	60.0%
	CGCATACGCGTGCAAGTGAG+AGG	+	chr1_3:75873560-75873579	None:intergenic	60.0%
	AGTGGATCCCACCGAGGCTA+TGG	-	chr1_3:75873647-75873666	Msa0141120:CDS	60.0%
	ATGGCCACCATAGCCTCGGT+GGG	+	chr1_3:75873657-75873676	None:intergenic	60.0%
	TATGGCCACCATAGCCTCGG+TGG	+	chr1_3:75873658-75873677	None:intergenic	60.0%
	GGCTATGGCCACCATAGCCT+CGG	+	chr1_3:75873661-75873680	None:intergenic	60.0%
	GGCTGCCAGCATTCCTCCAC+AGG	+	chr1_3:75872437-75872456	None:intergenic	65.0%
	GGTCGGTGGCTTGATCACCG+AGG	-	chr1_3:75872565-75872584	Msa0141120:CDS	65.0%
	GGATCCCACCGAGGCTATGG+TGG	-	chr1_3:75873650-75873669	Msa0141120:CDS	65.0%
	GGCTGCCAGCATTCCTCCAC+AGG	+	chr1_3:75872437-75872456	None:intergenic	65.0%
	GGTCGGTGGCTTGATCACCG+AGG	-	chr1_3:75872565-75872584	Msa0141120:CDS	65.0%
	GGATCCCACCGAGGCTATGG+TGG	-	chr1_3:75873650-75873669	Msa0141120:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	75872242	75874173	75872242	ID=Msa0141120;Name=Msa0141120
chr1_3	mRNA	75872242	75874173	75872242	ID=Msa0141120-mRNA-1;Parent=Msa0141120;Name=Msa0141120-mRNA-1;_AED=0.11;_eAED=0.11;_QI=18\|1\|1\|1\|1\|1\|2\|172\|366
chr1_3	exon	75872242	75872971	75872242	ID=Msa0141120-mRNA-1:exon:26484;Parent=Msa0141120-mRNA-1
chr1_3	exon	75873613	75874173	75873613	ID=Msa0141120-mRNA-1:exon:26483;Parent=Msa0141120-mRNA-1
chr1_3	five_prime_UTR	75874156	75874173	75874156	ID=Msa0141120-mRNA-1:five_prime_utr;Parent=Msa0141120-mRNA-1
chr1_3	CDS	75873613	75874155	75873613	ID=Msa0141120-mRNA-1:cds;Parent=Msa0141120-mRNA-1
chr1_3	CDS	75872414	75872971	75872414	ID=Msa0141120-mRNA-1:cds;Parent=Msa0141120-mRNA-1
chr1_3	three_prime_UTR	75872242	75872413	75872242	ID=Msa0141120-mRNA-1:three_prime_utr;Parent=Msa0141120-mRNA-1

Gene Sequence

>Msa0141120

ATGACGATGGCAACATTATGCACCCATGCGTGGACTCCCCTACAATGTTATCTAAAGGCCCCATCCAAAACATTCCTAAAACCCCAAAAGACACACTCAATGTCTCCTGAAAAGAAAGAAGTGTTCAAATCACTAGAGAAATGGGTTTCACAAAATGTGTTGCCATTGGTTAAACCTGTGGAGGAATGCTGGCAGCCACATAATTTGTTGCCAGACTCATCACTACCTTCCGATGAGTTCATCCATCAAGTGCAGGCCCTGAGAAATCGAACGGCTGAGCTTCCAGATGATTATCTTGTGGTTTTGGTCGGTGGCTTGATCACCGAGGAAGCATTGCCTACGTACCAAACATGGATAAACAAGTTGGATGGAGTTGGCGACGAGACTGGTTCAAGTCTCACACCATGGGCTATATGGTCACGCTCTTGGACCGCTGAAGAAAATAGACATGGAGATTTACTCAAAACTTATCTATATCTCTCCGGTCGAGTTGATATGTGCATGATTGAGAAGACTATCCAATATTTGATTGGAGCTGGCGTGGATGTGGGTACCGAAAACAACCCATACATGGGTTTTGTGTACACATCCTTTCAAGAGCGAGCCACATTTGTGTCACACGGAAACCTAGGTAGGTTGGCTAAAGAGAGAGGTGACCTCTCACTTGCACGCGTATGCGGGACAATTGCCGCTGATGAGAAGCGTCACGAGAATGCATATGTGAGGATTGTGGAAAAGCTTCTAGAAGTGGATCCCACCGAGGCTATGGTGGCCATAGCCAAAATGATGCGGCACAAGATTACAATGCCTGCTCACTTGATGCATGATGGACAAGACCCACGCCTCTTCGATCATTTTTCTGCAGTGGCACAGCGTATTGGCGCGTACACGACCAATGATTACGTTGATATCTTAGAGTTCTTGATTAGACGATGGAGATTGGAGAAGATTGAGGGTTTGACAAGCGAAGGACAACATGCACAAGAGTTCGTGTGTGGACTTGCACCTAGATTAAGGAAACTGGAAGAGCGTCTTGATGGGAGAACAAGCAAGATCAACCACAAATTCTCTTGGATCTTCAATAAAGAGTTGTCCTTGTGA

Protein sequence

>Msa0141120

MTMATLCTHAWTPLQCYLKAPSKTFLKPQKTHSMSPEKKEVFKSLEKWVSQNVLPLVKPVEECWQPHNLLPDSSLPSDEFIHQVQALRNRTAELPDDYLVVLVGGLITEEALPTYQTWINKLDGVGDETGSSLTPWAIWSRSWTAEENRHGDLLKTYLYLSGRVDMCMIEKTIQYLIGAGVDVGTENNPYMGFVYTSFQERATFVSHGNLGRLAKERGDLSLARVCGTIAADEKRHENAYVRIVEKLLEVDPTEAMVAIAKMMRHKITMPAHLMHDGQDPRLFDHFSAVAQRIGAYTTNDYVDILEFLIRRWRLEKIEGLTSEGQHAQEFVCGLAPRLRKLEERLDGRTSKINHKFSWIFNKELSL*