Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0953540 | sp|Q84VY3|STAD6_ARATH | 69.492 | 354 | 103 | 2 | 18 | 366 | 38 | 391 | 0.0 | 521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0953540 | G7J653 | 93.989 | 366 | 22 | 0 | 1 | 366 | 1 | 366 | 0.0 | 728 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0019600 | Msa0953540 | 0.845071 | 5.102677e-59 | -8.615850e-47 |
| Msa0111750 | Msa0953540 | 0.833026 | 6.755142e-56 | -8.615850e-47 |
| Msa0669840 | Msa0953540 | 0.842938 | 1.903975e-58 | -8.615850e-47 |
| Msa0711320 | Msa0953540 | 0.824364 | 8.402402e-54 | -8.615850e-47 |
| Msa0739580 | Msa0953540 | 0.814506 | 1.487941e-51 | -8.615850e-47 |
| Msa0748400 | Msa0953540 | 0.953597 | 1.930660e-111 | -8.615850e-47 |
| Msa0751890 | Msa0953540 | 0.874993 | 4.371872e-68 | -8.615850e-47 |
| Msa0752840 | Msa0953540 | 0.847937 | 8.429419e-60 | -8.615850e-47 |
| Msa0770290 | Msa0953540 | 0.807845 | 4.141604e-50 | -8.615850e-47 |
| Msa0819890 | Msa0953540 | 0.803310 | 3.705196e-49 | -8.615850e-47 |
| Msa0831940 | Msa0953540 | 0.854207 | 1.435352e-61 | -8.615850e-47 |
| Msa0124130 | Msa0953540 | 0.809597 | 1.749132e-50 | -8.615850e-47 |
| Msa0141120 | Msa0953540 | 0.838899 | 2.185541e-57 | -8.615850e-47 |
| Msa0149140 | Msa0953540 | 0.811466 | 6.902667e-51 | -8.615850e-47 |
| Msa0152480 | Msa0953540 | 0.809628 | 1.722835e-50 | -8.615850e-47 |
| Msa0152500 | Msa0953540 | 0.821522 | 3.860860e-53 | -8.615850e-47 |
| Msa0212080 | Msa0953540 | 0.811620 | 6.392578e-51 | -8.615850e-47 |
| Msa0215640 | Msa0953540 | 0.800947 | 1.134940e-48 | -8.615850e-47 |
| Msa0406000 | Msa0953540 | 0.859744 | 3.346003e-63 | -8.615850e-47 |
| Msa0424330 | Msa0953540 | 0.809070 | 2.269353e-50 | -8.615850e-47 |
| Msa0424340 | Msa0953540 | 0.829920 | 3.929297e-55 | -8.615850e-47 |
| Msa0424350 | Msa0953540 | 0.866221 | 3.341287e-65 | -8.615850e-47 |
| Msa0451400 | Msa0953540 | 0.859501 | 3.960945e-63 | -8.615850e-47 |
| Msa0252630 | Msa0953540 | 0.812694 | 3.726227e-51 | -8.615850e-47 |
| Msa0343660 | Msa0953540 | 0.829621 | 4.647627e-55 | -8.615850e-47 |
| Msa0359250 | Msa0953540 | 0.853225 | 2.749724e-61 | -8.615850e-47 |
| Msa0492190 | Msa0953540 | 0.843333 | 1.494156e-58 | -8.615850e-47 |
| Msa0515950 | Msa0953540 | 0.835304 | 1.814263e-56 | -8.615850e-47 |
| Msa0534930 | Msa0953540 | 0.813604 | 2.352757e-51 | -8.615850e-47 |
| Msa0591790 | Msa0953540 | 0.805831 | 1.104031e-49 | -8.615850e-47 |
| Msa0594090 | Msa0953540 | 0.812325 | 4.488209e-51 | -8.615850e-47 |
| Msa0860280 | Msa0953540 | 0.802994 | 4.307123e-49 | -8.615850e-47 |
| Msa0867350 | Msa0953540 | 0.817969 | 2.502199e-52 | -8.615850e-47 |
| Msa0898730 | Msa0953540 | 0.821773 | 3.377434e-53 | -8.615850e-47 |
| Msa0916640 | Msa0953540 | 0.966160 | 1.497744e-125 | -8.615850e-47 |
| Msa0922750 | Msa0953540 | 0.809342 | 1.983605e-50 | -8.615850e-47 |
| Msa0953540 | Msa0961560 | 0.808071 | 3.709126e-50 | -8.615850e-47 |
| Msa0953540 | Msa0996270 | 0.806882 | 6.629838e-50 | -8.615850e-47 |
| Msa0953540 | Msa1037890 | 0.813510 | 2.467346e-51 | -8.615850e-47 |
| Msa0953540 | Msa1084520 | 0.833485 | 5.191334e-56 | -8.615850e-47 |
| Msa0953540 | Msa1125810 | 0.816946 | 4.254200e-52 | -8.615850e-47 |
| Msa0953540 | Msa1171310 | 0.847409 | 1.178017e-59 | -8.615850e-47 |
| Msa0953540 | Msa1201160 | 0.826994 | 1.998870e-54 | -8.615850e-47 |
| Msa0953540 | Msa1254080 | 0.801740 | 7.807273e-49 | -8.615850e-47 |
| Msa0953540 | Msa1294290 | 0.804890 | 1.738051e-49 | -8.615850e-47 |
| Msa0953540 | Msa1305510 | 0.815997 | 6.938769e-52 | -8.615850e-47 |
| Msa0953540 | Msa1369040 | 0.807678 | 4.494527e-50 | -8.615850e-47 |
| Msa0953540 | Msa1378870 | 0.844006 | 9.873051e-59 | -8.615850e-47 |
| Msa0953540 | Msa1394890 | 0.808502 | 3.000898e-50 | -8.615850e-47 |
| Msa0953540 | Msa1406780 | 0.820022 | 8.541761e-53 | -8.615850e-47 |
| Msa0953540 | Msa1421550 | 0.809594 | 1.751758e-50 | -8.615850e-47 |
| Msa0953540 | Msa1431850 | 0.820041 | 8.456212e-53 | -8.615850e-47 |
| Msa0953540 | Msa1455320 | 0.825464 | 4.622301e-54 | -8.615850e-47 |
| Msa0953540 | Msa1461060 | 0.806707 | 7.216179e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0953540 | MtrunA17_Chr3g0126011 | 93.989 | 366 | 22 | 0 | 1 | 366 | 1 | 366 | 0.0 | 728 |
| Msa0953540 | MtrunA17_Chr3g0125991 | 90.984 | 366 | 33 | 0 | 1 | 366 | 1 | 366 | 0.0 | 702 |
| Msa0953540 | MtrunA17_Chr3g0125781 | 79.781 | 366 | 70 | 1 | 5 | 366 | 4 | 369 | 0.0 | 610 |
| Msa0953540 | MtrunA17_Chr3g0125981 | 76.022 | 367 | 83 | 1 | 3 | 364 | 2 | 368 | 0.0 | 587 |
| Msa0953540 | MtrunA17_Chr1g0159321 | 75.731 | 342 | 80 | 1 | 26 | 364 | 47 | 388 | 0.0 | 553 |
| Msa0953540 | MtrunA17_Chr4g0045661 | 65.805 | 348 | 111 | 3 | 23 | 364 | 46 | 391 | 1.10e-171 | 483 |
| Msa0953540 | MtrunA17_Chr5g0406961 | 65.805 | 348 | 111 | 3 | 23 | 364 | 97 | 442 | 1.88e-171 | 485 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0953540 | AT1G43800.1 | 69.492 | 354 | 103 | 2 | 18 | 366 | 38 | 391 | 0.0 | 521 |
| Msa0953540 | AT3G02630.1 | 65.680 | 338 | 112 | 2 | 29 | 364 | 59 | 394 | 3.55e-168 | 475 |
| Msa0953540 | AT5G16240.1 | 63.324 | 349 | 119 | 3 | 23 | 364 | 46 | 392 | 6.80e-166 | 469 |
| Msa0953540 | AT3G02610.2 | 59.677 | 372 | 130 | 5 | 14 | 366 | 43 | 413 | 1.81e-162 | 461 |
| Msa0953540 | AT3G02610.1 | 59.677 | 372 | 130 | 5 | 14 | 366 | 41 | 411 | 1.90e-162 | 461 |
| Msa0953540 | AT2G43710.2 | 63.422 | 339 | 121 | 2 | 29 | 366 | 65 | 401 | 4.77e-162 | 460 |
| Msa0953540 | AT2G43710.1 | 63.422 | 339 | 121 | 2 | 29 | 366 | 65 | 401 | 5.88e-162 | 459 |
| Msa0953540 | AT3G02620.2 | 59.615 | 364 | 135 | 4 | 14 | 366 | 44 | 406 | 6.41e-162 | 459 |
| Msa0953540 | AT3G02620.1 | 59.615 | 364 | 135 | 4 | 14 | 366 | 41 | 403 | 9.23e-162 | 459 |
| Msa0953540 | AT5G16230.1 | 61.988 | 342 | 125 | 3 | 29 | 366 | 61 | 401 | 1.40e-160 | 456 |
| Msa0953540 | AT5G16230.2 | 61.963 | 326 | 119 | 3 | 45 | 366 | 1 | 325 | 2.97e-154 | 437 |
| Msa0953540 | AT3G02620.3 | 61.585 | 328 | 119 | 3 | 45 | 366 | 1 | 327 | 1.92e-152 | 432 |
Find 92 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATGATTATCTTGTGGTTT+TGG | 0.263671 | 6_3:-50151385 | Msa0953540:CDS |
| AATCTTGCGATGCATCATTT+TGG | 0.286538 | 6_3:+50150252 | None:intergenic |
| GAGACATTGAGTGTGTCTTT+TGG | 0.299881 | 6_3:+50151586 | None:intergenic |
| CCAACTTGTTTATCCATGTT+TGG | 0.336928 | 6_3:+50151325 | None:intergenic |
| GTCTCACACCATGGGCTATA+TGG | 0.350432 | 6_3:-50151275 | Msa0953540:CDS |
| CTCTCAGGGCCTGCACTTGA+TGG | 0.353548 | 6_3:+50151427 | None:intergenic |
| TGCACCTAGATTAAGAAAAC+TGG | 0.364017 | 6_3:-50150029 | Msa0953540:CDS |
| GGGCTATATGGTCACGCTCT+TGG | 0.370720 | 6_3:-50151263 | Msa0953540:CDS |
| TGCCAGCTCCAATCAAATAT+TGG | 0.374430 | 6_3:+50151151 | None:intergenic |
| TGTTCAAATCACTAGAGAAA+TGG | 0.378630 | 6_3:-50151548 | Msa0953540:CDS |
| CTTGATTAGACGATGGAGAT+TGG | 0.392791 | 6_3:-50150110 | Msa0953540:CDS |
| GTTCAAATCACTAGAGAAAT+GGG | 0.399384 | 6_3:-50151547 | Msa0953540:CDS |
| AAGACTATCCAATATTTGAT+TGG | 0.400329 | 6_3:-50151159 | Msa0953540:CDS |
| GCTCAGCCGTTCGATCTCTC+AGG | 0.408301 | 6_3:+50151412 | None:intergenic |
| GGCTGCCAGCATTCCTCCAC+AGG | 0.422913 | 6_3:+50151495 | None:intergenic |
| GTGTACACAAAACCCATGTA+TGG | 0.438769 | 6_3:+50150466 | None:intergenic |
| AGATCAATCACAAATTCTCT+TGG | 0.444851 | 6_3:-50149979 | Msa0953540:CDS |
| GATGGAGTTGGCGACGAGAC+TGG | 0.447459 | 6_3:-50151303 | Msa0953540:CDS |
| TGGAGATTGGAGAAGATTGA+GGG | 0.448075 | 6_3:-50150097 | Msa0953540:CDS |
| TCTGCAGTGGCACAACGTAT+TGG | 0.460018 | 6_3:-50150172 | Msa0953540:CDS |
| ATCCAATATTTGATTGGAGC+TGG | 0.463614 | 6_3:-50151153 | Msa0953540:CDS |
| AAACTGGAAGAGCGTCTTGA+TGG | 0.465202 | 6_3:-50150013 | Msa0953540:CDS |
| TACCGAAAACAACCCATACA+TGG | 0.467155 | 6_3:-50150479 | Msa0953540:CDS |
| AGTTGATCCCACCGAGGCTA+TGG | 0.482931 | 6_3:-50150284 | Msa0953540:CDS |
| ATGGAGATTGGAGAAGATTG+AGG | 0.484391 | 6_3:-50150098 | Msa0953540:CDS |
| GGCTATGGCCACCATAGCCT+CGG | 0.489653 | 6_3:+50150273 | None:intergenic |
| TTCACAAAGTGTGTTGCCAT+TGG | 0.492726 | 6_3:-50151523 | Msa0953540:CDS |
| AAAACCACAAGATAATCATC+TGG | 0.498146 | 6_3:+50151387 | None:intergenic |
| TTTATCCATGTTTGGTACGT+AGG | 0.501588 | 6_3:+50151333 | None:intergenic |
| TCTCTTTAGCCAACCTACCT+AGG | 0.503420 | 6_3:+50150404 | None:intergenic |
| CTCTCACTTGCACGCATATG+CGG | 0.504929 | 6_3:-50150373 | Msa0953540:CDS |
| GTACGTAGGCAATGCTTCCT+CGG | 0.510676 | 6_3:+50151347 | None:intergenic |
| ATTAGACGAAAGTGGGCTCA+TGG | 0.514548 | 6_3:+50149813 | None:intergenic |
| GAGAGCAATTAGACGAAAGT+GGG | 0.519569 | 6_3:+50149806 | None:intergenic |
| TCGGAAGGTAGTGATGAGTC+TGG | 0.523237 | 6_3:+50151459 | None:intergenic |
| TGAGAGCAATTAGACGAAAG+TGG | 0.524192 | 6_3:+50149805 | None:intergenic |
| TCTCACTTGCACGCATATGC+GGG | 0.524777 | 6_3:-50150372 | Msa0953540:CDS |
| GCTTCCAGATGATTATCTTG+TGG | 0.527931 | 6_3:-50151391 | Msa0953540:CDS |
| CCCGCTCACTTGATGCATGA+TGG | 0.529067 | 6_3:-50150223 | Msa0953540:CDS |
| AACTGGAAGAGCGTCTTGAT+GGG | 0.529372 | 6_3:-50150012 | Msa0953540:CDS |
| TCCACTACAATGTTATCTAA+AGG | 0.529663 | 6_3:-50151634 | Msa0953540:CDS |
| CCAAACATGGATAAACAAGT+TGG | 0.530351 | 6_3:-50151325 | Msa0953540:CDS |
| AAAACTTATCTATATCTCTC+CGG | 0.537755 | 6_3:-50151207 | Msa0953540:CDS |
| CATTGCCTACGTACCAAACA+TGG | 0.538689 | 6_3:-50151338 | Msa0953540:CDS |
| ATATTTGATTGGAGCTGGCA+TGG | 0.538813 | 6_3:-50151148 | Msa0953540:intron |
| AAATGTGGCTCGCTCTTGAA+AGG | 0.540932 | 6_3:+50150441 | None:intergenic |
| TCAAACCTGTGGAGGAATGC+TGG | 0.543810 | 6_3:-50151500 | Msa0953540:CDS |
| CCATCATGCATCAAGTGAGC+GGG | 0.549039 | 6_3:+50150223 | None:intergenic |
| TCCTCCACAGGTTTGACCAA+TGG | 0.550904 | 6_3:+50151507 | None:intergenic |
| ATAAACAAGTTGGATGGAGT+TGG | 0.559959 | 6_3:-50151315 | Msa0953540:CDS |
| CGCATATGCGTGCAAGTGAG+AGG | 0.561577 | 6_3:+50150374 | None:intergenic |
| TGAGTTCATCCATCAAGTGC+AGG | 0.567672 | 6_3:-50151436 | Msa0953540:CDS |
| TATGGCCACCATAGCCTCGG+TGG | 0.570103 | 6_3:+50150276 | None:intergenic |
| GCCTTTAGATAACATTGTAG+TGG | 0.571116 | 6_3:+50151633 | None:intergenic |
| ACATGGATAAACAAGTTGGA+TGG | 0.572710 | 6_3:-50151321 | Msa0953540:CDS |
| ATTGAGGGTTTGACAAGCGA+AGG | 0.578019 | 6_3:-50150082 | Msa0953540:CDS |
| CTCAGCCGTTCGATCTCTCA+GGG | 0.579284 | 6_3:+50151413 | None:intergenic |
| TTGTTCATGGTGTAGGATGT+GGG | 0.582554 | 6_3:-50150502 | Msa0953540:intron |
| CAACAATATGCACCCATGCA+TGG | 0.584323 | 6_3:-50151659 | Msa0953540:CDS |
| TGTCACACGGCAACCTAGGT+AGG | 0.586115 | 6_3:-50150417 | Msa0953540:CDS |
| CATGCACATATCAACTCGAC+CGG | 0.587049 | 6_3:+50151188 | None:intergenic |
| TGATCCCACCGAGGCTATGG+TGG | 0.588287 | 6_3:-50150281 | Msa0953540:CDS |
| TGGTTCAAGTCTCACACCAT+GGG | 0.600203 | 6_3:-50151283 | Msa0953540:CDS |
| TTTGTGTCACACGGCAACCT+AGG | 0.600519 | 6_3:-50150421 | Msa0953540:CDS |
| TAGAGTTCTTGATTAGACGA+TGG | 0.605110 | 6_3:-50150117 | Msa0953540:CDS |
| TCCATCATGCATCAAGTGAG+CGG | 0.608659 | 6_3:+50150222 | None:intergenic |
| CTGGTTCAAGTCTCACACCA+TGG | 0.612232 | 6_3:-50151284 | Msa0953540:CDS |
| ATTGTAGTGGAGTCCATGCA+TGG | 0.616264 | 6_3:+50151646 | None:intergenic |
| GCAGGCCCTGAGAGATCGAA+CGG | 0.616767 | 6_3:-50151418 | Msa0953540:CDS |
| CGAGCCACATTTGTGTCACA+CGG | 0.618843 | 6_3:-50150430 | Msa0953540:CDS |
| ATGGCCACCATAGCCTCGGT+GGG | 0.619166 | 6_3:+50150277 | None:intergenic |
| TGCAATTATAAAACTTCACA+CGG | 0.621217 | 6_3:+50149937 | None:intergenic |
| GAGCGTGACCATATAGCCCA+TGG | 0.625365 | 6_3:+50151267 | None:intergenic |
| ACCGAAAACAACCCATACAT+GGG | 0.628237 | 6_3:-50150478 | Msa0953540:CDS |
| TATCAAATTAACAATGACGA+TGG | 0.630822 | 6_3:-50151682 | Msa0953540:exon |
| GTTGCCATTGGTCAAACCTG+TGG | 0.631709 | 6_3:-50151511 | Msa0953540:CDS |
| ACACGGCAACCTAGGTAGGT+TGG | 0.632318 | 6_3:-50150413 | Msa0953540:CDS |
| GGTAGGTTGGCTAAAGAGAG+AGG | 0.635441 | 6_3:-50150400 | Msa0953540:CDS |
| TGTACACAAAACCCATGTAT+GGG | 0.636404 | 6_3:+50150467 | None:intergenic |
| GAATGCATATGTGAGGATTG+TGG | 0.642224 | 6_3:-50150320 | Msa0953540:CDS |
| GAGTCTGGCAACAAATTATG+TGG | 0.650290 | 6_3:+50151474 | None:intergenic |
| GCCATTGGTCAAACCTGTGG+AGG | 0.654988 | 6_3:-50151508 | Msa0953540:CDS |
| CACTTGATGGATGAACTCAT+CGG | 0.663477 | 6_3:+50151440 | None:intergenic |
| GTCACGAGAATGCATATGTG+AGG | 0.664895 | 6_3:-50150327 | Msa0953540:CDS |
| ACCGCTGAAGAAAATAGACA+TGG | 0.664992 | 6_3:-50151240 | Msa0953540:CDS |
| CTCGTGACGCTTCTCATCAG+CGG | 0.665409 | 6_3:+50150342 | None:intergenic |
| TGATGGATGAACTCATCGGA+AGG | 0.673548 | 6_3:+50151444 | None:intergenic |
| TTGTAGTGGAGTCCATGCAT+GGG | 0.697506 | 6_3:+50151647 | None:intergenic |
| CATGCACAAGAGTTTGTGTG+TGG | 0.720139 | 6_3:-50150055 | Msa0953540:CDS |
| GTTGCCGTGTGACACAAATG+TGG | 0.723814 | 6_3:+50150426 | None:intergenic |
| GGTCGGTGGCATGATCACCG+AGG | 0.744020 | 6_3:-50151364 | Msa0953540:CDS |
| TCTAGAAGTTGATCCCACCG+AGG | 0.786898 | 6_3:-50150290 | Msa0953540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATGAAAAATGTTATT+TGG | + | chr6_3:50150958-50150977 | None:intergenic | 10.0% |
| !! | AATTTATGAAAAATGTTATT+TGG | + | chr6_3:50150958-50150977 | None:intergenic | 10.0% |
| !! | ATAAATTAATTGATTGTTCA+TGG | - | chr6_3:50150971-50150990 | Msa0953540:intron | 15.0% |
| !! | ATAAATTAATTGATTGTTCA+TGG | - | chr6_3:50150971-50150990 | Msa0953540:intron | 15.0% |
| !! | TAATAAATCGTATTTGTGTA+TGG | + | chr6_3:50150637-50150656 | None:intergenic | 20.0% |
| !! | TAATAAATCGTATTTGTGTA+TGG | + | chr6_3:50150637-50150656 | None:intergenic | 20.0% |
| ! | TATCAAATTAACAATGACGA+TGG | - | chr6_3:50149804-50149823 | Msa0953540:three_prime_UTR | 25.0% |
| ! | AAAACTTATCTATATCTCTC+CGG | - | chr6_3:50150279-50150298 | Msa0953540:CDS | 25.0% |
| ! | AAGACTATCCAATATTTGAT+TGG | - | chr6_3:50150327-50150346 | Msa0953540:CDS | 25.0% |
| !!! | ATTTGTTATTCTCGTTAGTT+TGG | + | chr6_3:50150539-50150558 | None:intergenic | 25.0% |
| ! | ACAATGCATAATATATGCAA+AGG | - | chr6_3:50150766-50150785 | Msa0953540:intron | 25.0% |
| ! | GAACGACTATTAAAAAATAG+TGG | + | chr6_3:50150830-50150849 | None:intergenic | 25.0% |
| !!! | TTCTATTTCTTTTTCTTTCG+AGG | - | chr6_3:50150919-50150938 | Msa0953540:intron | 25.0% |
| ! | TGCAATTATAAAACTTCACA+CGG | + | chr6_3:50151552-50151571 | None:intergenic | 25.0% |
| ! | TATCAAATTAACAATGACGA+TGG | - | chr6_3:50149804-50149823 | Msa0953540:three_prime_UTR | 25.0% |
| ! | AAAACTTATCTATATCTCTC+CGG | - | chr6_3:50150279-50150298 | Msa0953540:CDS | 25.0% |
| ! | AAGACTATCCAATATTTGAT+TGG | - | chr6_3:50150327-50150346 | Msa0953540:CDS | 25.0% |
| !!! | ATTTGTTATTCTCGTTAGTT+TGG | + | chr6_3:50150539-50150558 | None:intergenic | 25.0% |
| ! | ACAATGCATAATATATGCAA+AGG | - | chr6_3:50150766-50150785 | Msa0953540:intron | 25.0% |
| ! | GAACGACTATTAAAAAATAG+TGG | + | chr6_3:50150830-50150849 | None:intergenic | 25.0% |
| !!! | TTCTATTTCTTTTTCTTTCG+AGG | - | chr6_3:50150919-50150938 | Msa0953540:intron | 25.0% |
| ! | TGCAATTATAAAACTTCACA+CGG | + | chr6_3:50151552-50151571 | None:intergenic | 25.0% |
| TCCACTACAATGTTATCTAA+AGG | - | chr6_3:50149852-50149871 | Msa0953540:three_prime_UTR | 30.0% | |
| !! | TTTTAGGAATGTTTTGGATG+GGG | + | chr6_3:50149878-50149897 | None:intergenic | 30.0% |
| !!! | GTTTTAGGAATGTTTTGGAT+GGG | + | chr6_3:50149879-50149898 | None:intergenic | 30.0% |
| ! | TTGAACACTTCTTTCTTTTC+AGG | + | chr6_3:50149925-50149944 | None:intergenic | 30.0% |
| TGTTCAAATCACTAGAGAAA+TGG | - | chr6_3:50149938-50149957 | Msa0953540:exon | 30.0% | |
| GTTCAAATCACTAGAGAAAT+GGG | - | chr6_3:50149939-50149958 | Msa0953540:exon | 30.0% | |
| AAAACCACAAGATAATCATC+TGG | + | chr6_3:50150102-50150121 | None:intergenic | 30.0% | |
| ! | AGATGATTATCTTGTGGTTT+TGG | - | chr6_3:50150101-50150120 | Msa0953540:CDS | 30.0% |
| ATATGTATAGATGACAGTGA+CGG | + | chr6_3:50150378-50150397 | None:intergenic | 30.0% | |
| ACATATACATGCACACAATA+TGG | - | chr6_3:50150392-50150411 | Msa0953540:CDS | 30.0% | |
| AGCTCACAAAGATAAAATAG+AGG | + | chr6_3:50150729-50150748 | None:intergenic | 30.0% | |
| !!! | ATAGTGGTGTCTTTTTTTTG+CGG | + | chr6_3:50150814-50150833 | None:intergenic | 30.0% |
| TAATTGATTGTTCATGGTGT+AGG | - | chr6_3:50150977-50150996 | Msa0953540:intron | 30.0% | |
| ! | TCTTCCAGTTTTCTTAATCT+AGG | + | chr6_3:50151464-50151483 | None:intergenic | 30.0% |
| AGATCAATCACAAATTCTCT+TGG | - | chr6_3:50151507-50151526 | Msa0953540:CDS | 30.0% | |
| TCCACTACAATGTTATCTAA+AGG | - | chr6_3:50149852-50149871 | Msa0953540:three_prime_UTR | 30.0% | |
| !! | TTTTAGGAATGTTTTGGATG+GGG | + | chr6_3:50149878-50149897 | None:intergenic | 30.0% |
| !!! | GTTTTAGGAATGTTTTGGAT+GGG | + | chr6_3:50149879-50149898 | None:intergenic | 30.0% |
| ! | TTGAACACTTCTTTCTTTTC+AGG | + | chr6_3:50149925-50149944 | None:intergenic | 30.0% |
| TGTTCAAATCACTAGAGAAA+TGG | - | chr6_3:50149938-50149957 | Msa0953540:exon | 30.0% | |
| GTTCAAATCACTAGAGAAAT+GGG | - | chr6_3:50149939-50149958 | Msa0953540:exon | 30.0% | |
| AAAACCACAAGATAATCATC+TGG | + | chr6_3:50150102-50150121 | None:intergenic | 30.0% | |
| ! | AGATGATTATCTTGTGGTTT+TGG | - | chr6_3:50150101-50150120 | Msa0953540:CDS | 30.0% |
| ATATGTATAGATGACAGTGA+CGG | + | chr6_3:50150378-50150397 | None:intergenic | 30.0% | |
| ACATATACATGCACACAATA+TGG | - | chr6_3:50150392-50150411 | Msa0953540:CDS | 30.0% | |
| AGCTCACAAAGATAAAATAG+AGG | + | chr6_3:50150729-50150748 | None:intergenic | 30.0% | |
| !!! | ATAGTGGTGTCTTTTTTTTG+CGG | + | chr6_3:50150814-50150833 | None:intergenic | 30.0% |
| TAATTGATTGTTCATGGTGT+AGG | - | chr6_3:50150977-50150996 | Msa0953540:intron | 30.0% | |
| ! | TCTTCCAGTTTTCTTAATCT+AGG | + | chr6_3:50151464-50151483 | None:intergenic | 30.0% |
| AGATCAATCACAAATTCTCT+TGG | - | chr6_3:50151507-50151526 | Msa0953540:CDS | 30.0% | |
| GCCTTTAGATAACATTGTAG+TGG | + | chr6_3:50149856-50149875 | None:intergenic | 35.0% | |
| !!! | GGTTTTAGGAATGTTTTGGA+TGG | + | chr6_3:50149880-50149899 | None:intergenic | 35.0% |
| !!! | TTGGGGTTTTAGGAATGTTT+TGG | + | chr6_3:50149884-50149903 | None:intergenic | 35.0% |
| ! | AGACATTGAGTGTGTCTTTT+GGG | + | chr6_3:50149902-50149921 | None:intergenic | 35.0% |
| !!! | GATTATCTTGTGGTTTTGGT+CGG | - | chr6_3:50150105-50150124 | Msa0953540:CDS | 35.0% |
| TTTATCCATGTTTGGTACGT+AGG | + | chr6_3:50150156-50150175 | None:intergenic | 35.0% | |
| ! | CCAACTTGTTTATCCATGTT+TGG | + | chr6_3:50150164-50150183 | None:intergenic | 35.0% |
| CCAAACATGGATAAACAAGT+TGG | - | chr6_3:50150161-50150180 | Msa0953540:CDS | 35.0% | |
| ! | ACATGGATAAACAAGTTGGA+TGG | - | chr6_3:50150165-50150184 | Msa0953540:CDS | 35.0% |
| ! | ATAAACAAGTTGGATGGAGT+TGG | - | chr6_3:50150171-50150190 | Msa0953540:CDS | 35.0% |
| ! | TCCATGTCTATTTTCTTCAG+CGG | + | chr6_3:50150250-50150269 | None:intergenic | 35.0% |
| ATCCAATATTTGATTGGAGC+TGG | - | chr6_3:50150333-50150352 | Msa0953540:CDS | 35.0% | |
| ! | CGTTAGTTTGGCAAATGTAT+GGG | + | chr6_3:50150527-50150546 | None:intergenic | 35.0% |
| ! | TCGTTAGTTTGGCAAATGTA+TGG | + | chr6_3:50150528-50150547 | None:intergenic | 35.0% |
| GCATAATATATGCAAAGGTC+CGG | - | chr6_3:50150771-50150790 | Msa0953540:intron | 35.0% | |
| CATAATATATGCAAAGGTCC+GGG | - | chr6_3:50150772-50150791 | Msa0953540:intron | 35.0% | |
| TGTACACAAAACCCATGTAT+GGG | + | chr6_3:50151022-50151041 | None:intergenic | 35.0% | |
| ! | AATCTTGCGATGCATCATTT+TGG | + | chr6_3:50151237-50151256 | None:intergenic | 35.0% |
| TAGAGTTCTTGATTAGACGA+TGG | - | chr6_3:50151369-50151388 | Msa0953540:CDS | 35.0% | |
| TGCACCTAGATTAAGAAAAC+TGG | - | chr6_3:50151457-50151476 | Msa0953540:CDS | 35.0% | |
| GCCTTTAGATAACATTGTAG+TGG | + | chr6_3:50149856-50149875 | None:intergenic | 35.0% | |
| !!! | GGTTTTAGGAATGTTTTGGA+TGG | + | chr6_3:50149880-50149899 | None:intergenic | 35.0% |
| !!! | TTGGGGTTTTAGGAATGTTT+TGG | + | chr6_3:50149884-50149903 | None:intergenic | 35.0% |
| ! | AGACATTGAGTGTGTCTTTT+GGG | + | chr6_3:50149902-50149921 | None:intergenic | 35.0% |
| !!! | GATTATCTTGTGGTTTTGGT+CGG | - | chr6_3:50150105-50150124 | Msa0953540:CDS | 35.0% |
| TTTATCCATGTTTGGTACGT+AGG | + | chr6_3:50150156-50150175 | None:intergenic | 35.0% | |
| ! | CCAACTTGTTTATCCATGTT+TGG | + | chr6_3:50150164-50150183 | None:intergenic | 35.0% |
| CCAAACATGGATAAACAAGT+TGG | - | chr6_3:50150161-50150180 | Msa0953540:CDS | 35.0% | |
| ! | ACATGGATAAACAAGTTGGA+TGG | - | chr6_3:50150165-50150184 | Msa0953540:CDS | 35.0% |
| ! | ATAAACAAGTTGGATGGAGT+TGG | - | chr6_3:50150171-50150190 | Msa0953540:CDS | 35.0% |
| ! | TCCATGTCTATTTTCTTCAG+CGG | + | chr6_3:50150250-50150269 | None:intergenic | 35.0% |
| ATCCAATATTTGATTGGAGC+TGG | - | chr6_3:50150333-50150352 | Msa0953540:CDS | 35.0% | |
| ! | CGTTAGTTTGGCAAATGTAT+GGG | + | chr6_3:50150527-50150546 | None:intergenic | 35.0% |
| ! | TCGTTAGTTTGGCAAATGTA+TGG | + | chr6_3:50150528-50150547 | None:intergenic | 35.0% |
| GCATAATATATGCAAAGGTC+CGG | - | chr6_3:50150771-50150790 | Msa0953540:intron | 35.0% | |
| CATAATATATGCAAAGGTCC+GGG | - | chr6_3:50150772-50150791 | Msa0953540:intron | 35.0% | |
| TGTACACAAAACCCATGTAT+GGG | + | chr6_3:50151022-50151041 | None:intergenic | 35.0% | |
| ! | AATCTTGCGATGCATCATTT+TGG | + | chr6_3:50151237-50151256 | None:intergenic | 35.0% |
| TAGAGTTCTTGATTAGACGA+TGG | - | chr6_3:50151369-50151388 | Msa0953540:CDS | 35.0% | |
| TGCACCTAGATTAAGAAAAC+TGG | - | chr6_3:50151457-50151476 | Msa0953540:CDS | 35.0% | |
| !!! | AGTGTGTCTTTTGGGGTTTT+AGG | + | chr6_3:50149894-50149913 | None:intergenic | 40.0% |
| ! | GACATTGAGTGTGTCTTTTG+GGG | + | chr6_3:50149901-50149920 | None:intergenic | 40.0% |
| ! | GAGACATTGAGTGTGTCTTT+TGG | + | chr6_3:50149903-50149922 | None:intergenic | 40.0% |
| TTCACAAAGTGTGTTGCCAT+TGG | - | chr6_3:50149963-50149982 | Msa0953540:CDS | 40.0% | |
| GAGTCTGGCAACAAATTATG+TGG | + | chr6_3:50150015-50150034 | None:intergenic | 40.0% | |
| ! | CACTTGATGGATGAACTCAT+CGG | + | chr6_3:50150049-50150068 | None:intergenic | 40.0% |
| GCTTCCAGATGATTATCTTG+TGG | - | chr6_3:50150095-50150114 | Msa0953540:CDS | 40.0% | |
| ACCGCTGAAGAAAATAGACA+TGG | - | chr6_3:50150246-50150265 | Msa0953540:CDS | 40.0% | |
| TGCCAGCTCCAATCAAATAT+TGG | + | chr6_3:50150338-50150357 | None:intergenic | 40.0% | |
| ATATTTGATTGGAGCTGGCA+TGG | - | chr6_3:50150338-50150357 | Msa0953540:CDS | 40.0% | |
| CTTTGTGAGCTTAACTCAGT+TGG | - | chr6_3:50150738-50150757 | Msa0953540:intron | 40.0% | |
| !!! | TGTCTTTTTTTTGCGGTGGT+CGG | + | chr6_3:50150807-50150826 | None:intergenic | 40.0% |
| ATTGTTCATGGTGTAGGATG+TGG | - | chr6_3:50150983-50151002 | Msa0953540:intron | 40.0% | |
| TTGTTCATGGTGTAGGATGT+GGG | - | chr6_3:50150984-50151003 | Msa0953540:intron | 40.0% | |
| TACCGAAAACAACCCATACA+TGG | - | chr6_3:50151007-50151026 | Msa0953540:intron | 40.0% | |
| ACCGAAAACAACCCATACAT+GGG | - | chr6_3:50151008-50151027 | Msa0953540:intron | 40.0% | |
| !! | ACCCATGTATGGGTTGTTTT+CGG | + | chr6_3:50151012-50151031 | None:intergenic | 40.0% |
| GTGTACACAAAACCCATGTA+TGG | + | chr6_3:50151023-50151042 | None:intergenic | 40.0% | |
| GAATGCATATGTGAGGATTG+TGG | - | chr6_3:50151166-50151185 | Msa0953540:CDS | 40.0% | |
| ! | AAAAATGATCGAAGAGGCGT+GGG | + | chr6_3:50151295-50151314 | None:intergenic | 40.0% |
| CTGCAGAAAAATGATCGAAG+AGG | + | chr6_3:50151301-50151320 | None:intergenic | 40.0% | |
| !! | CTTCGATCATTTTTCTGCAG+TGG | - | chr6_3:50151301-50151320 | Msa0953540:CDS | 40.0% |
| CTTGATTAGACGATGGAGAT+TGG | - | chr6_3:50151376-50151395 | Msa0953540:CDS | 40.0% | |
| ATGGAGATTGGAGAAGATTG+AGG | - | chr6_3:50151388-50151407 | Msa0953540:CDS | 40.0% | |
| TGGAGATTGGAGAAGATTGA+GGG | - | chr6_3:50151389-50151408 | Msa0953540:CDS | 40.0% | |
| GAGAGCAATTAGACGAAAGT+GGG | + | chr6_3:50151683-50151702 | None:intergenic | 40.0% | |
| TGAGAGCAATTAGACGAAAG+TGG | + | chr6_3:50151684-50151703 | None:intergenic | 40.0% | |
| !!! | AGTGTGTCTTTTGGGGTTTT+AGG | + | chr6_3:50149894-50149913 | None:intergenic | 40.0% |
| ! | GACATTGAGTGTGTCTTTTG+GGG | + | chr6_3:50149901-50149920 | None:intergenic | 40.0% |
| ! | GAGACATTGAGTGTGTCTTT+TGG | + | chr6_3:50149903-50149922 | None:intergenic | 40.0% |
| TTCACAAAGTGTGTTGCCAT+TGG | - | chr6_3:50149963-50149982 | Msa0953540:CDS | 40.0% | |
| GAGTCTGGCAACAAATTATG+TGG | + | chr6_3:50150015-50150034 | None:intergenic | 40.0% | |
| ! | CACTTGATGGATGAACTCAT+CGG | + | chr6_3:50150049-50150068 | None:intergenic | 40.0% |
| GCTTCCAGATGATTATCTTG+TGG | - | chr6_3:50150095-50150114 | Msa0953540:CDS | 40.0% | |
| ACCGCTGAAGAAAATAGACA+TGG | - | chr6_3:50150246-50150265 | Msa0953540:CDS | 40.0% | |
| TGCCAGCTCCAATCAAATAT+TGG | + | chr6_3:50150338-50150357 | None:intergenic | 40.0% | |
| ATATTTGATTGGAGCTGGCA+TGG | - | chr6_3:50150338-50150357 | Msa0953540:CDS | 40.0% | |
| CTTTGTGAGCTTAACTCAGT+TGG | - | chr6_3:50150738-50150757 | Msa0953540:intron | 40.0% | |
| !!! | TGTCTTTTTTTTGCGGTGGT+CGG | + | chr6_3:50150807-50150826 | None:intergenic | 40.0% |
| ATTGTTCATGGTGTAGGATG+TGG | - | chr6_3:50150983-50151002 | Msa0953540:intron | 40.0% | |
| TTGTTCATGGTGTAGGATGT+GGG | - | chr6_3:50150984-50151003 | Msa0953540:intron | 40.0% | |
| TACCGAAAACAACCCATACA+TGG | - | chr6_3:50151007-50151026 | Msa0953540:intron | 40.0% | |
| ACCGAAAACAACCCATACAT+GGG | - | chr6_3:50151008-50151027 | Msa0953540:intron | 40.0% | |
| !! | ACCCATGTATGGGTTGTTTT+CGG | + | chr6_3:50151012-50151031 | None:intergenic | 40.0% |
| GTGTACACAAAACCCATGTA+TGG | + | chr6_3:50151023-50151042 | None:intergenic | 40.0% | |
| GAATGCATATGTGAGGATTG+TGG | - | chr6_3:50151166-50151185 | Msa0953540:CDS | 40.0% | |
| ! | AAAAATGATCGAAGAGGCGT+GGG | + | chr6_3:50151295-50151314 | None:intergenic | 40.0% |
| CTGCAGAAAAATGATCGAAG+AGG | + | chr6_3:50151301-50151320 | None:intergenic | 40.0% | |
| !! | CTTCGATCATTTTTCTGCAG+TGG | - | chr6_3:50151301-50151320 | Msa0953540:CDS | 40.0% |
| CTTGATTAGACGATGGAGAT+TGG | - | chr6_3:50151376-50151395 | Msa0953540:CDS | 40.0% | |
| ATGGAGATTGGAGAAGATTG+AGG | - | chr6_3:50151388-50151407 | Msa0953540:CDS | 40.0% | |
| TGGAGATTGGAGAAGATTGA+GGG | - | chr6_3:50151389-50151408 | Msa0953540:CDS | 40.0% | |
| GAGAGCAATTAGACGAAAGT+GGG | + | chr6_3:50151683-50151702 | None:intergenic | 40.0% | |
| TGAGAGCAATTAGACGAAAG+TGG | + | chr6_3:50151684-50151703 | None:intergenic | 40.0% | |
| CAACAATATGCACCCATGCA+TGG | - | chr6_3:50149827-50149846 | Msa0953540:three_prime_UTR | 45.0% | |
| ! | TTGTAGTGGAGTCCATGCAT+GGG | + | chr6_3:50149842-50149861 | None:intergenic | 45.0% |
| ! | ATTGTAGTGGAGTCCATGCA+TGG | + | chr6_3:50149843-50149862 | None:intergenic | 45.0% |
| ! | TGATGGATGAACTCATCGGA+AGG | + | chr6_3:50150045-50150064 | None:intergenic | 45.0% |
| TGAGTTCATCCATCAAGTGC+AGG | - | chr6_3:50150050-50150069 | Msa0953540:CDS | 45.0% | |
| !!! | TATCTTGTGGTTTTGGTCGG+TGG | - | chr6_3:50150108-50150127 | Msa0953540:CDS | 45.0% |
| CATTGCCTACGTACCAAACA+TGG | - | chr6_3:50150148-50150167 | Msa0953540:CDS | 45.0% | |
| TGGTTCAAGTCTCACACCAT+GGG | - | chr6_3:50150203-50150222 | Msa0953540:CDS | 45.0% | |
| CATGCACATATCAACTCGAC+CGG | + | chr6_3:50150301-50150320 | None:intergenic | 45.0% | |
| TGCACTCGTAACACGTATGT+GGG | + | chr6_3:50150605-50150624 | None:intergenic | 45.0% | |
| !!! | GTCTTTTTTTTGCGGTGGTC+GGG | + | chr6_3:50150806-50150825 | None:intergenic | 45.0% |
| !!! | GTGGTGTCTTTTTTTTGCGG+TGG | + | chr6_3:50150811-50150830 | None:intergenic | 45.0% |
| AAATGTGGCTCGCTCTTGAA+AGG | + | chr6_3:50151048-50151067 | None:intergenic | 45.0% | |
| TCTCTTTAGCCAACCTACCT+AGG | + | chr6_3:50151085-50151104 | None:intergenic | 45.0% | |
| GTCACGAGAATGCATATGTG+AGG | - | chr6_3:50151159-50151178 | Msa0953540:CDS | 45.0% | |
| !!! | GCGATGCATCATTTTGGCTA+TGG | + | chr6_3:50151231-50151250 | None:intergenic | 45.0% |
| TCCATCATGCATCAAGTGAG+CGG | + | chr6_3:50151267-50151286 | None:intergenic | 45.0% | |
| GAAAAATGATCGAAGAGGCG+TGG | + | chr6_3:50151296-50151315 | None:intergenic | 45.0% | |
| ATTGAGGGTTTGACAAGCGA+AGG | - | chr6_3:50151404-50151423 | Msa0953540:CDS | 45.0% | |
| CATGCACAAGAGTTTGTGTG+TGG | - | chr6_3:50151431-50151450 | Msa0953540:CDS | 45.0% | |
| !! | AAACTGGAAGAGCGTCTTGA+TGG | - | chr6_3:50151473-50151492 | Msa0953540:CDS | 45.0% |
| !! | AACTGGAAGAGCGTCTTGAT+GGG | - | chr6_3:50151474-50151493 | Msa0953540:CDS | 45.0% |
| ! | ATTAGACGAAAGTGGGCTCA+TGG | + | chr6_3:50151676-50151695 | None:intergenic | 45.0% |
| CAACAATATGCACCCATGCA+TGG | - | chr6_3:50149827-50149846 | Msa0953540:three_prime_UTR | 45.0% | |
| ! | TTGTAGTGGAGTCCATGCAT+GGG | + | chr6_3:50149842-50149861 | None:intergenic | 45.0% |
| ! | ATTGTAGTGGAGTCCATGCA+TGG | + | chr6_3:50149843-50149862 | None:intergenic | 45.0% |
| ! | TGATGGATGAACTCATCGGA+AGG | + | chr6_3:50150045-50150064 | None:intergenic | 45.0% |
| TGAGTTCATCCATCAAGTGC+AGG | - | chr6_3:50150050-50150069 | Msa0953540:CDS | 45.0% | |
| !!! | TATCTTGTGGTTTTGGTCGG+TGG | - | chr6_3:50150108-50150127 | Msa0953540:CDS | 45.0% |
| CATTGCCTACGTACCAAACA+TGG | - | chr6_3:50150148-50150167 | Msa0953540:CDS | 45.0% | |
| TGGTTCAAGTCTCACACCAT+GGG | - | chr6_3:50150203-50150222 | Msa0953540:CDS | 45.0% | |
| CATGCACATATCAACTCGAC+CGG | + | chr6_3:50150301-50150320 | None:intergenic | 45.0% | |
| TGCACTCGTAACACGTATGT+GGG | + | chr6_3:50150605-50150624 | None:intergenic | 45.0% | |
| !!! | GTCTTTTTTTTGCGGTGGTC+GGG | + | chr6_3:50150806-50150825 | None:intergenic | 45.0% |
| !!! | GTGGTGTCTTTTTTTTGCGG+TGG | + | chr6_3:50150811-50150830 | None:intergenic | 45.0% |
| AAATGTGGCTCGCTCTTGAA+AGG | + | chr6_3:50151048-50151067 | None:intergenic | 45.0% | |
| TCTCTTTAGCCAACCTACCT+AGG | + | chr6_3:50151085-50151104 | None:intergenic | 45.0% | |
| GTCACGAGAATGCATATGTG+AGG | - | chr6_3:50151159-50151178 | Msa0953540:CDS | 45.0% | |
| !!! | GCGATGCATCATTTTGGCTA+TGG | + | chr6_3:50151231-50151250 | None:intergenic | 45.0% |
| TCCATCATGCATCAAGTGAG+CGG | + | chr6_3:50151267-50151286 | None:intergenic | 45.0% | |
| GAAAAATGATCGAAGAGGCG+TGG | + | chr6_3:50151296-50151315 | None:intergenic | 45.0% | |
| ATTGAGGGTTTGACAAGCGA+AGG | - | chr6_3:50151404-50151423 | Msa0953540:CDS | 45.0% | |
| CATGCACAAGAGTTTGTGTG+TGG | - | chr6_3:50151431-50151450 | Msa0953540:CDS | 45.0% | |
| !! | AAACTGGAAGAGCGTCTTGA+TGG | - | chr6_3:50151473-50151492 | Msa0953540:CDS | 45.0% |
| !! | AACTGGAAGAGCGTCTTGAT+GGG | - | chr6_3:50151474-50151493 | Msa0953540:CDS | 45.0% |
| ! | ATTAGACGAAAGTGGGCTCA+TGG | + | chr6_3:50151676-50151695 | None:intergenic | 45.0% |
| GTTGCCATTGGTCAAACCTG+TGG | - | chr6_3:50149975-50149994 | Msa0953540:CDS | 50.0% | |
| TCCTCCACAGGTTTGACCAA+TGG | + | chr6_3:50149982-50150001 | None:intergenic | 50.0% | |
| TCAAACCTGTGGAGGAATGC+TGG | - | chr6_3:50149986-50150005 | Msa0953540:CDS | 50.0% | |
| TCGGAAGGTAGTGATGAGTC+TGG | + | chr6_3:50150030-50150049 | None:intergenic | 50.0% | |
| GTACGTAGGCAATGCTTCCT+CGG | + | chr6_3:50150142-50150161 | None:intergenic | 50.0% | |
| CTGGTTCAAGTCTCACACCA+TGG | - | chr6_3:50150202-50150221 | Msa0953540:CDS | 50.0% | |
| ! | GTCTCACACCATGGGCTATA+TGG | - | chr6_3:50150211-50150230 | Msa0953540:CDS | 50.0% |
| CTGCACTCGTAACACGTATG+TGG | + | chr6_3:50150606-50150625 | None:intergenic | 50.0% | |
| CACATACGTGTTACGAGTGC+AGG | - | chr6_3:50150604-50150623 | Msa0953540:intron | 50.0% | |
| CGAGCCACATTTGTGTCACA+CGG | - | chr6_3:50151056-50151075 | Msa0953540:intron | 50.0% | |
| GTTGCCGTGTGACACAAATG+TGG | + | chr6_3:50151063-50151082 | None:intergenic | 50.0% | |
| TTTGTGTCACACGGCAACCT+AGG | - | chr6_3:50151065-50151084 | Msa0953540:intron | 50.0% | |
| ! | GGTAGGTTGGCTAAAGAGAG+AGG | - | chr6_3:50151086-50151105 | Msa0953540:intron | 50.0% |
| CTCTCACTTGCACGCATATG+CGG | - | chr6_3:50151113-50151132 | Msa0953540:intron | 50.0% | |
| TCTCACTTGCACGCATATGC+GGG | - | chr6_3:50151114-50151133 | Msa0953540:intron | 50.0% | |
| ! | TCTAGAAGTTGATCCCACCG+AGG | - | chr6_3:50151196-50151215 | Msa0953540:CDS | 50.0% |
| CCATCATGCATCAAGTGAGC+GGG | + | chr6_3:50151266-50151285 | None:intergenic | 50.0% | |
| TCTGCAGTGGCACAACGTAT+TGG | - | chr6_3:50151314-50151333 | Msa0953540:CDS | 50.0% | |
| GTTGCCATTGGTCAAACCTG+TGG | - | chr6_3:50149975-50149994 | Msa0953540:CDS | 50.0% | |
| TCCTCCACAGGTTTGACCAA+TGG | + | chr6_3:50149982-50150001 | None:intergenic | 50.0% | |
| TCAAACCTGTGGAGGAATGC+TGG | - | chr6_3:50149986-50150005 | Msa0953540:CDS | 50.0% | |
| TCGGAAGGTAGTGATGAGTC+TGG | + | chr6_3:50150030-50150049 | None:intergenic | 50.0% | |
| GTACGTAGGCAATGCTTCCT+CGG | + | chr6_3:50150142-50150161 | None:intergenic | 50.0% | |
| CTGGTTCAAGTCTCACACCA+TGG | - | chr6_3:50150202-50150221 | Msa0953540:CDS | 50.0% | |
| ! | GTCTCACACCATGGGCTATA+TGG | - | chr6_3:50150211-50150230 | Msa0953540:CDS | 50.0% |
| CTGCACTCGTAACACGTATG+TGG | + | chr6_3:50150606-50150625 | None:intergenic | 50.0% | |
| CACATACGTGTTACGAGTGC+AGG | - | chr6_3:50150604-50150623 | Msa0953540:intron | 50.0% | |
| CGAGCCACATTTGTGTCACA+CGG | - | chr6_3:50151056-50151075 | Msa0953540:intron | 50.0% | |
| GTTGCCGTGTGACACAAATG+TGG | + | chr6_3:50151063-50151082 | None:intergenic | 50.0% | |
| TTTGTGTCACACGGCAACCT+AGG | - | chr6_3:50151065-50151084 | Msa0953540:intron | 50.0% | |
| ! | GGTAGGTTGGCTAAAGAGAG+AGG | - | chr6_3:50151086-50151105 | Msa0953540:intron | 50.0% |
| CTCTCACTTGCACGCATATG+CGG | - | chr6_3:50151113-50151132 | Msa0953540:intron | 50.0% | |
| TCTCACTTGCACGCATATGC+GGG | - | chr6_3:50151114-50151133 | Msa0953540:intron | 50.0% | |
| ! | TCTAGAAGTTGATCCCACCG+AGG | - | chr6_3:50151196-50151215 | Msa0953540:CDS | 50.0% |
| CCATCATGCATCAAGTGAGC+GGG | + | chr6_3:50151266-50151285 | None:intergenic | 50.0% | |
| TCTGCAGTGGCACAACGTAT+TGG | - | chr6_3:50151314-50151333 | Msa0953540:CDS | 50.0% | |
| GCCATTGGTCAAACCTGTGG+AGG | - | chr6_3:50149978-50149997 | Msa0953540:CDS | 55.0% | |
| CTCAGCCGTTCGATCTCTCA+GGG | + | chr6_3:50150076-50150095 | None:intergenic | 55.0% | |
| GAGCGTGACCATATAGCCCA+TGG | + | chr6_3:50150222-50150241 | None:intergenic | 55.0% | |
| GGGCTATATGGTCACGCTCT+TGG | - | chr6_3:50150223-50150242 | Msa0953540:CDS | 55.0% | |
| GGTGGTCGGGATTTGAATCC+CGG | + | chr6_3:50150793-50150812 | None:intergenic | 55.0% | |
| TGTCACACGGCAACCTAGGT+AGG | - | chr6_3:50151069-50151088 | Msa0953540:intron | 55.0% | |
| ACACGGCAACCTAGGTAGGT+TGG | - | chr6_3:50151073-50151092 | Msa0953540:intron | 55.0% | |
| CGCATATGCGTGCAAGTGAG+AGG | + | chr6_3:50151115-50151134 | None:intergenic | 55.0% | |
| CTCGTGACGCTTCTCATCAG+CGG | + | chr6_3:50151147-50151166 | None:intergenic | 55.0% | |
| AGTTGATCCCACCGAGGCTA+TGG | - | chr6_3:50151202-50151221 | Msa0953540:CDS | 55.0% | |
| CCCGCTCACTTGATGCATGA+TGG | - | chr6_3:50151263-50151282 | Msa0953540:CDS | 55.0% | |
| GCCATTGGTCAAACCTGTGG+AGG | - | chr6_3:50149978-50149997 | Msa0953540:CDS | 55.0% | |
| CTCAGCCGTTCGATCTCTCA+GGG | + | chr6_3:50150076-50150095 | None:intergenic | 55.0% | |
| GAGCGTGACCATATAGCCCA+TGG | + | chr6_3:50150222-50150241 | None:intergenic | 55.0% | |
| GGGCTATATGGTCACGCTCT+TGG | - | chr6_3:50150223-50150242 | Msa0953540:CDS | 55.0% | |
| GGTGGTCGGGATTTGAATCC+CGG | + | chr6_3:50150793-50150812 | None:intergenic | 55.0% | |
| TGTCACACGGCAACCTAGGT+AGG | - | chr6_3:50151069-50151088 | Msa0953540:intron | 55.0% | |
| ACACGGCAACCTAGGTAGGT+TGG | - | chr6_3:50151073-50151092 | Msa0953540:intron | 55.0% | |
| CGCATATGCGTGCAAGTGAG+AGG | + | chr6_3:50151115-50151134 | None:intergenic | 55.0% | |
| CTCGTGACGCTTCTCATCAG+CGG | + | chr6_3:50151147-50151166 | None:intergenic | 55.0% | |
| AGTTGATCCCACCGAGGCTA+TGG | - | chr6_3:50151202-50151221 | Msa0953540:CDS | 55.0% | |
| CCCGCTCACTTGATGCATGA+TGG | - | chr6_3:50151263-50151282 | Msa0953540:CDS | 55.0% | |
| CTCTCAGGGCCTGCACTTGA+TGG | + | chr6_3:50150062-50150081 | None:intergenic | 60.0% | |
| GCAGGCCCTGAGAGATCGAA+CGG | - | chr6_3:50150068-50150087 | Msa0953540:CDS | 60.0% | |
| GCTCAGCCGTTCGATCTCTC+AGG | + | chr6_3:50150077-50150096 | None:intergenic | 60.0% | |
| GATGGAGTTGGCGACGAGAC+TGG | - | chr6_3:50150183-50150202 | Msa0953540:CDS | 60.0% | |
| TGATCCCACCGAGGCTATGG+TGG | - | chr6_3:50151205-50151224 | Msa0953540:CDS | 60.0% | |
| ATGGCCACCATAGCCTCGGT+GGG | + | chr6_3:50151212-50151231 | None:intergenic | 60.0% | |
| TATGGCCACCATAGCCTCGG+TGG | + | chr6_3:50151213-50151232 | None:intergenic | 60.0% | |
| GGCTATGGCCACCATAGCCT+CGG | + | chr6_3:50151216-50151235 | None:intergenic | 60.0% | |
| CTCTCAGGGCCTGCACTTGA+TGG | + | chr6_3:50150062-50150081 | None:intergenic | 60.0% | |
| GCAGGCCCTGAGAGATCGAA+CGG | - | chr6_3:50150068-50150087 | Msa0953540:CDS | 60.0% | |
| GCTCAGCCGTTCGATCTCTC+AGG | + | chr6_3:50150077-50150096 | None:intergenic | 60.0% | |
| GATGGAGTTGGCGACGAGAC+TGG | - | chr6_3:50150183-50150202 | Msa0953540:CDS | 60.0% | |
| TGATCCCACCGAGGCTATGG+TGG | - | chr6_3:50151205-50151224 | Msa0953540:CDS | 60.0% | |
| ATGGCCACCATAGCCTCGGT+GGG | + | chr6_3:50151212-50151231 | None:intergenic | 60.0% | |
| TATGGCCACCATAGCCTCGG+TGG | + | chr6_3:50151213-50151232 | None:intergenic | 60.0% | |
| GGCTATGGCCACCATAGCCT+CGG | + | chr6_3:50151216-50151235 | None:intergenic | 60.0% | |
| GGCTGCCAGCATTCCTCCAC+AGG | + | chr6_3:50149994-50150013 | None:intergenic | 65.0% | |
| GGTCGGTGGCATGATCACCG+AGG | - | chr6_3:50150122-50150141 | Msa0953540:CDS | 65.0% | |
| GGCTGCCAGCATTCCTCCAC+AGG | + | chr6_3:50149994-50150013 | None:intergenic | 65.0% | |
| GGTCGGTGGCATGATCACCG+AGG | - | chr6_3:50150122-50150141 | Msa0953540:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 50149799 | 50151709 | 50149799 | ID=Msa0953540;Name=Msa0953540 |
| chr6_3 | mRNA | 50149799 | 50151709 | 50149799 | ID=Msa0953540-mRNA-1;Parent=Msa0953540;Name=Msa0953540-mRNA-1;_AED=0.00;_eAED=0.00;_QI=18|1|1|1|1|1|2|153|366 |
| chr6_3 | exon | 50149799 | 50150509 | 50149799 | ID=Msa0953540-mRNA-1:exon:10926;Parent=Msa0953540-mRNA-1 |
| chr6_3 | exon | 50151149 | 50151709 | 50151149 | ID=Msa0953540-mRNA-1:exon:10925;Parent=Msa0953540-mRNA-1 |
| chr6_3 | five_prime_UTR | 50151692 | 50151709 | 50151692 | ID=Msa0953540-mRNA-1:five_prime_utr;Parent=Msa0953540-mRNA-1 |
| chr6_3 | CDS | 50151149 | 50151691 | 50151149 | ID=Msa0953540-mRNA-1:cds;Parent=Msa0953540-mRNA-1 |
| chr6_3 | CDS | 50149952 | 50150509 | 50149952 | ID=Msa0953540-mRNA-1:cds;Parent=Msa0953540-mRNA-1 |
| chr6_3 | three_prime_UTR | 50149799 | 50149951 | 50149799 | ID=Msa0953540-mRNA-1:three_prime_utr;Parent=Msa0953540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
