Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0927910 | XP_013453041.1 | 97.906 | 191 | 4 | 0 | 1 | 191 | 1 | 191 | 1.88e-133 | 381 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0927910 | sp|Q9ZNS1|RS7_AVIMR | 81.579 | 190 | 35 | 0 | 1 | 190 | 1 | 190 | 5.39e-114 | 325 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0072570 | Msa0927910 | 0.814633 | 1.394825e-51 | -8.615850e-47 |
| Msa0087910 | Msa0927910 | 0.814802 | 1.279781e-51 | -8.615850e-47 |
| Msa0114600 | Msa0927910 | 0.836092 | 1.145978e-56 | -8.615850e-47 |
| Msa0602900 | Msa0927910 | 0.811803 | 5.831321e-51 | -8.615850e-47 |
| Msa0605890 | Msa0927910 | 0.860471 | 2.018453e-63 | -8.615850e-47 |
| Msa0643960 | Msa0927910 | 0.820151 | 7.981677e-53 | -8.615850e-47 |
| Msa0704860 | Msa0927910 | 0.803341 | 3.651368e-49 | -8.615850e-47 |
| Msa0134580 | Msa0927910 | 0.810437 | 1.153445e-50 | -8.615850e-47 |
| Msa0167860 | Msa0927910 | 0.837618 | 4.673292e-57 | -8.615850e-47 |
| Msa0186740 | Msa0927910 | 0.818626 | 1.777255e-52 | -8.615850e-47 |
| Msa0187810 | Msa0927910 | 0.992547 | 6.012311e-194 | -8.615850e-47 |
| Msa0192750 | Msa0927910 | 0.812430 | 4.255889e-51 | -8.615850e-47 |
| Msa0194940 | Msa0927910 | 0.832172 | 1.099853e-55 | -8.615850e-47 |
| Msa0222730 | Msa0927910 | 0.801190 | 1.012211e-48 | -8.615850e-47 |
| Msa0235050 | Msa0927910 | 0.837787 | 4.229662e-57 | -8.615850e-47 |
| Msa0369410 | Msa0927910 | 0.806167 | 9.381448e-50 | -8.615850e-47 |
| Msa0426090 | Msa0927910 | 0.810603 | 1.061907e-50 | -8.615850e-47 |
| Msa0426250 | Msa0927910 | 0.826876 | 2.132178e-54 | -8.615850e-47 |
| Msa0472480 | Msa0927910 | 0.800574 | 1.352227e-48 | -8.615850e-47 |
| Msa0277600 | Msa0927910 | 0.805362 | 1.384576e-49 | -8.615850e-47 |
| Msa0281330 | Msa0927910 | 0.894903 | 1.590378e-75 | -8.615850e-47 |
| Msa0281370 | Msa0927910 | 0.854945 | 8.778966e-62 | -8.615850e-47 |
| Msa0315430 | Msa0927910 | 0.817691 | 2.891693e-52 | -8.615850e-47 |
| Msa0547920 | Msa0927910 | 0.827512 | 1.501513e-54 | -8.615850e-47 |
| Msa0550420 | Msa0927910 | 0.813505 | 2.474648e-51 | -8.615850e-47 |
| Msa0550490 | Msa0927910 | 0.806464 | 8.121490e-50 | -8.615850e-47 |
| Msa0573550 | Msa0927910 | 0.807348 | 5.280577e-50 | -8.615850e-47 |
| Msa0902220 | Msa0927910 | 0.996201 | 1.327240e-224 | -8.615850e-47 |
| Msa0927910 | Msa0929700 | 0.821661 | 3.586102e-53 | -8.615850e-47 |
| Msa0927910 | Msa1040160 | 0.805904 | 1.065731e-49 | -8.615850e-47 |
| Msa0927910 | Msa1079910 | 0.802230 | 6.191620e-49 | -8.615850e-47 |
| Msa0927910 | Msa1124850 | 0.825997 | 3.453827e-54 | -8.615850e-47 |
| Msa0927910 | Msa1147670 | 0.814084 | 1.844564e-51 | -8.615850e-47 |
| Msa0927910 | Msa1186030 | 0.816598 | 5.092358e-52 | -8.615850e-47 |
| Msa0927910 | Msa1341780 | 0.806071 | 9.826913e-50 | -8.615850e-47 |
| Msa0927910 | Msa1351910 | 0.810257 | 1.261421e-50 | -8.615850e-47 |
| Msa0927910 | Msa1367540 | 0.818614 | 1.787809e-52 | -8.615850e-47 |
| Msa0927910 | Msa1397660 | 0.816992 | 4.154180e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0927910 | MtrunA17_Chr6g0484891 | 97.906 | 191 | 4 | 0 | 1 | 191 | 1 | 191 | 1.73e-137 | 381 |
| Msa0927910 | MtrunA17_Chr6g0458031 | 97.382 | 191 | 5 | 0 | 1 | 191 | 1 | 191 | 3.80e-137 | 380 |
| Msa0927910 | MtrunA17_Chr8g0379651 | 63.636 | 44 | 8 | 1 | 145 | 188 | 51 | 86 | 6.20e-12 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0927910 | AT1G48830.1 | 79.058 | 191 | 40 | 0 | 1 | 191 | 1 | 191 | 1.54e-114 | 324 |
| Msa0927910 | AT1G48830.2 | 79.058 | 191 | 40 | 0 | 1 | 191 | 1 | 191 | 1.54e-114 | 324 |
| Msa0927910 | AT3G02560.1 | 79.581 | 191 | 39 | 0 | 1 | 191 | 1 | 191 | 5.73e-113 | 320 |
| Msa0927910 | AT3G02560.3 | 79.581 | 191 | 39 | 0 | 1 | 191 | 1 | 191 | 5.73e-113 | 320 |
| Msa0927910 | AT3G02560.2 | 79.581 | 191 | 39 | 0 | 1 | 191 | 1 | 191 | 5.73e-113 | 320 |
| Msa0927910 | AT5G16130.1 | 80.319 | 188 | 37 | 0 | 1 | 188 | 1 | 188 | 2.00e-112 | 318 |
Find 73 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAGCCAAGTTGATGTTTC+TGG | 0.145762 | 6_2:+72486846 | Msa0927910:intron |
| ATATGATGAATGTTTATTTA+TGG | 0.222500 | 6_2:+72488025 | Msa0927910:three_prime_UTR |
| GTTGAAGCTCTCTATGATTC+TGG | 0.238608 | 6_2:+72488057 | Msa0927910:three_prime_UTR |
| TATGATACATTATTTATTAT+AGG | 0.254565 | 6_2:+72488101 | Msa0927910:three_prime_UTR |
| TCCTCAATCTGTAGGGGATA+TGG | 0.261869 | 6_2:-72486890 | None:intergenic |
| AGAATCTACGCCTCAGTAAC+AGG | 0.280462 | 6_2:-72487966 | None:intergenic |
| TTTGTTAACCTATATAGTTT+TGG | 0.282836 | 6_2:-72484415 | None:intergenic |
| TGAGCAGCGGAGCCTTTCTT+TGG | 0.288203 | 6_2:-72487518 | None:intergenic |
| ATAGTTTACCTTCATGATCT+TGG | 0.292174 | 6_2:-72487648 | None:intergenic |
| TTATTATGAAAAGTCTTTCT+TGG | 0.331298 | 6_2:-72488184 | None:intergenic |
| CAACACATATATTTACAAAA+TGG | 0.341102 | 6_2:-72484378 | None:intergenic |
| TAAACCAAGAGTGTTTCATT+AGG | 0.349218 | 6_2:+72484444 | Msa0927910:five_prime_UTR |
| AAATTCACGTCAAGCTCGTT+AGG | 0.363074 | 6_2:+72486925 | Msa0927910:CDS |
| CGTACTAGATACAGAATTGA+TGG | 0.367485 | 6_2:+72487623 | Msa0927910:CDS |
| TATAATAAATAATGTATCAT+AGG | 0.369192 | 6_2:-72488099 | None:intergenic |
| TATTATGAAAAGTCTTTCTT+GGG | 0.377421 | 6_2:-72488183 | None:intergenic |
| AAACCAAGAGTGTTTCATTA+GGG | 0.381952 | 6_2:+72484445 | Msa0927910:five_prime_UTR |
| GTTGCAGGCTTTGTTTGATC+TGG | 0.412438 | 6_2:+72486685 | Msa0927910:intron |
| CGCTGAGCCTACTGAATTTG+AGG | 0.426295 | 6_2:+72486552 | Msa0927910:CDS |
| ACACAAGCCCAAAACTATAT+AGG | 0.431675 | 6_2:+72484407 | Msa0927910:five_prime_UTR |
| GCAGCGGAGCCTTTCTTTGG+TGG | 0.435938 | 6_2:-72487515 | None:intergenic |
| TTGTGAATATGTTTACTTCA+AGG | 0.441187 | 6_2:+72486506 | Msa0927910:exon |
| ATCTGCATCTTCTTCGGCTA+AGG | 0.454250 | 6_2:+72484502 | Msa0927910:five_prime_UTR |
| GCAGTTTACAGGAAACTCTC+AGG | 0.456482 | 6_2:+72487921 | Msa0927910:CDS |
| AACTATATAGGTTAACAAAC+GGG | 0.460024 | 6_2:+72484419 | Msa0927910:five_prime_UTR |
| AGCCGCATCTGCATCTTCTT+CGG | 0.466019 | 6_2:+72484496 | Msa0927910:five_prime_UTR |
| ATTTGAGGAGTCAGTTGGAC+AGG | 0.472058 | 6_2:+72486567 | Msa0927910:CDS |
| TGTTACCTGCTGAGATTGTT+GGG | 0.479284 | 6_2:+72487597 | Msa0927910:CDS |
| AAACTATATAGGTTAACAAA+CGG | 0.480311 | 6_2:+72484418 | Msa0927910:five_prime_UTR |
| TGGTGGCCTGACGATTCTCC+TGG | 0.483590 | 6_2:-72487498 | None:intergenic |
| GTGTTACCTGCTGAGATTGT+TGG | 0.484291 | 6_2:+72487596 | Msa0927910:CDS |
| AAACCCTAATGAAACACTCT+TGG | 0.492918 | 6_2:-72484448 | None:intergenic |
| TCCCCTACAGATTGAGGAAG+GGG | 0.499187 | 6_2:+72486895 | Msa0927910:CDS |
| CGTGGACAGCAGTGAGTGTA+CGG | 0.505350 | 6_2:-72487553 | None:intergenic |
| ATCGTCAGGCCACCAAAGAA+AGG | 0.508890 | 6_2:+72487506 | Msa0927910:CDS |
| TTCTGGAAACCGCAAGGCTG+TGG | 0.509249 | 6_2:+72486863 | Msa0927910:CDS |
| TCCATATCCCCTACAGATTG+AGG | 0.509912 | 6_2:+72486889 | Msa0927910:CDS |
| TTGCCACCAGGAGAATCGTC+AGG | 0.510117 | 6_2:+72487492 | Msa0927910:CDS |
| GAAGAAAATCAGCAAGGACA+AGG | 0.510615 | 6_2:+72486528 | Msa0927910:CDS |
| GAACCCCTTCCTCAATCTGT+AGG | 0.515858 | 6_2:-72486898 | None:intergenic |
| AACCCCTTCCTCAATCTGTA+GGG | 0.520673 | 6_2:-72486897 | None:intergenic |
| ACTGAATTTGAGGAGTCAGT+TGG | 0.548538 | 6_2:+72486562 | Msa0927910:CDS |
| GCGCGCGAGAAGTGTGAAGG+TGG | 0.549394 | 6_2:+72484319 | None:intergenic |
| AATTCACGTCAAGCTCGTTA+GGG | 0.550766 | 6_2:+72486926 | Msa0927910:CDS |
| GCTGCGTGGACGCTGAGCAG+CGG | 0.558388 | 6_2:-72487531 | None:intergenic |
| CGTTTCCCAACAATCTCAGC+AGG | 0.558735 | 6_2:-72487602 | None:intergenic |
| GTTTGAGTACCCTGTTACTG+AGG | 0.572498 | 6_2:+72487956 | Msa0927910:CDS |
| TATCCCCTACAGATTGAGGA+AGG | 0.573232 | 6_2:+72486893 | Msa0927910:CDS |
| GGTTTCCAGAAACATCAACT+TGG | 0.575562 | 6_2:-72486851 | None:intergenic |
| TAAATGATATATTAAAATGA+CGG | 0.578845 | 6_2:+72488237 | Msa0927910:three_prime_UTR |
| ATGTAATCCTCATTGCCACC+AGG | 0.584954 | 6_2:+72487480 | Msa0927910:CDS |
| CGATTCTCCTGGTGGCAATG+AGG | 0.590532 | 6_2:-72487487 | None:intergenic |
| CGCGCGAGAAGTGTGAAGGT+GGG | 0.590711 | 6_2:+72484320 | None:intergenic |
| AAGAAAATCAGCAAGGACAA+GGG | 0.599976 | 6_2:+72486529 | Msa0927910:CDS |
| CAGTTTACAGGAAACTCTCA+GGG | 0.612531 | 6_2:+72487922 | Msa0927910:CDS |
| TGAGAAGAAATTCAGCGGAA+AGG | 0.621961 | 6_2:+72486953 | Msa0927910:CDS |
| TGATGTTTCTGGAAACCGCA+AGG | 0.622049 | 6_2:+72486857 | Msa0927910:CDS |
| ATCCCCTACAGATTGAGGAA+GGG | 0.622569 | 6_2:+72486894 | Msa0927910:CDS |
| ACTGACTCCTCAAATTCAGT+AGG | 0.622702 | 6_2:-72486559 | None:intergenic |
| AGCCGAAGAAGATGCAGATG+CGG | 0.627417 | 6_2:-72484498 | None:intergenic |
| AGGGCGCGCGAGAAGTGTGA+AGG | 0.630598 | 6_2:+72484316 | None:intergenic |
| ACCCCTTCCTCAATCTGTAG+GGG | 0.633929 | 6_2:-72486896 | None:intergenic |
| TGATGGATCCAAGATCATGA+AGG | 0.639271 | 6_2:+72487640 | Msa0927910:CDS |
| TGTCCACGAGGCAATGCTCG+AGG | 0.642990 | 6_2:+72487568 | Msa0927910:CDS |
| TTCAAGGAAGAAAATCAGCA+AGG | 0.648771 | 6_2:+72486522 | Msa0927910:CDS |
| GCAGTGAGTGTACGGCTGCG+TGG | 0.657285 | 6_2:-72487545 | None:intergenic |
| TACACTCACTGCTGTCCACG+AGG | 0.659160 | 6_2:+72487556 | Msa0927910:CDS |
| TGGCCTGACGATTCTCCTGG+TGG | 0.662830 | 6_2:-72487495 | None:intergenic |
| ATGTGATATAACTTGTGTTG+CGG | 0.669488 | 6_2:+72488213 | Msa0927910:three_prime_UTR |
| TATGGATAACCACAGCCTTG+CGG | 0.675676 | 6_2:-72486872 | None:intergenic |
| GAATCTACGCCTCAGTAACA+GGG | 0.678065 | 6_2:-72487965 | None:intergenic |
| CATCCTCGAGCATTGCCTCG+TGG | 0.690997 | 6_2:-72487571 | None:intergenic |
| GAGCTTGAGAAGAAATTCAG+CGG | 0.694607 | 6_2:+72486948 | Msa0927910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCATTTGAAATTTAAAAA+TGG | + | chr6_2:72484694-72484713 | Msa0927910:intron | 10.0% |
| !!! | TTCATTTGAAATTTAAAAAT+GGG | + | chr6_2:72484695-72484714 | Msa0927910:intron | 10.0% |
| !!! | GTAATTTTTATAAACTAAAT+TGG | - | chr6_2:72484983-72485002 | None:intergenic | 10.0% |
| !! | TATAATAAATAATGTATCAT+AGG | - | chr6_2:72488102-72488121 | None:intergenic | 10.0% |
| !! | TATGATACATTATTTATTAT+AGG | + | chr6_2:72488101-72488120 | Msa0927910:three_prime_UTR | 10.0% |
| !! | TAAATGATATATTAAAATGA+CGG | + | chr6_2:72488237-72488256 | Msa0927910:three_prime_UTR | 10.0% |
| !! | ATTGTTATAGAAATAGATAA+AGG | + | chr6_2:72484878-72484897 | Msa0927910:intron | 15.0% |
| !!! | AAAAATCGTTTTTTATTGAT+TGG | + | chr6_2:72485889-72485908 | Msa0927910:intron | 15.0% |
| !! | ATATGATGAATGTTTATTTA+TGG | + | chr6_2:72488025-72488044 | Msa0927910:three_prime_UTR | 15.0% |
| !! | CAACACATATATTTACAAAA+TGG | - | chr6_2:72484381-72484400 | None:intergenic | 20.0% |
| !!! | CATTTTGTAAATATATGTGT+TGG | + | chr6_2:72484379-72484398 | Msa0927910:five_prime_UTR | 20.0% |
| !!! | TTGTTAACCTATATAGTTTT+GGG | - | chr6_2:72484417-72484436 | None:intergenic | 20.0% |
| !!! | TTTGTTAACCTATATAGTTT+TGG | - | chr6_2:72484418-72484437 | None:intergenic | 20.0% |
| !! | AAACTATATAGGTTAACAAA+CGG | + | chr6_2:72484418-72484437 | Msa0927910:five_prime_UTR | 20.0% |
| !! | AACTTTGAATTCAATTAACA+TGG | - | chr6_2:72484584-72484603 | None:intergenic | 20.0% |
| !! | ATGAAAACAGTTTATGATAA+AGG | + | chr6_2:72484948-72484967 | Msa0927910:intron | 20.0% |
| !! | TGAAAACAGTTTATGATAAA+GGG | + | chr6_2:72484949-72484968 | Msa0927910:intron | 20.0% |
| !!! | AAACGATTTAACTTAACTTT+GGG | - | chr6_2:72485108-72485127 | None:intergenic | 20.0% |
| !!! | AAAACGATTTAACTTAACTT+TGG | - | chr6_2:72485109-72485128 | None:intergenic | 20.0% |
| !!! | GTAGTTTTTATAAGCTATAT+TGG | + | chr6_2:72485143-72485162 | Msa0927910:intron | 20.0% |
| !!! | ATTTTATCAGTGAATATGAT+TGG | + | chr6_2:72485438-72485457 | Msa0927910:intron | 20.0% |
| !!! | TTTTCTTTTTGTTTTTTCCT+CGG | + | chr6_2:72485601-72485620 | Msa0927910:intron | 20.0% |
| !!! | TATGCTTTTTTTTGTCTAAT+GGG | + | chr6_2:72485669-72485688 | Msa0927910:intron | 20.0% |
| !! | TTTGAATCATTTGAGAAAAT+TGG | + | chr6_2:72485921-72485940 | Msa0927910:intron | 20.0% |
| !! | TTGAATCATTTGAGAAAATT+GGG | + | chr6_2:72485922-72485941 | Msa0927910:intron | 20.0% |
| !! | GAAACATTAACAAGAAAAAT+GGG | - | chr6_2:72486052-72486071 | None:intergenic | 20.0% |
| !! | AGAAACATTAACAAGAAAAA+TGG | - | chr6_2:72486053-72486072 | None:intergenic | 20.0% |
| !!! | TTTTTCAATATTTTGTTTCG+TGG | + | chr6_2:72486116-72486135 | Msa0927910:intron | 20.0% |
| !!! | AGGTTATATATTGATTACTA+CGG | + | chr6_2:72486587-72486606 | Msa0927910:intron | 20.0% |
| !! | AAATTGGAACAAAAAATTGT+CGG | - | chr6_2:72487050-72487069 | None:intergenic | 20.0% |
| !! | AGAATAAAGTTCTTGAAATA+AGG | - | chr6_2:72487099-72487118 | None:intergenic | 20.0% |
| !! | TTAAAGCAATTTAAAAACCA+AGG | - | chr6_2:72487134-72487153 | None:intergenic | 20.0% |
| !! | CAAATTATTTAGTGTATGTT+TGG | - | chr6_2:72487364-72487383 | None:intergenic | 20.0% |
| !! | TATTATGAAAAGTCTTTCTT+GGG | - | chr6_2:72488186-72488205 | None:intergenic | 20.0% |
| !! | TTATTATGAAAAGTCTTTCT+TGG | - | chr6_2:72488187-72488206 | None:intergenic | 20.0% |
| !!! | TGTTTTCCAACTTTTTTCTT+GGG | - | chr6_2:72484356-72484375 | None:intergenic | 25.0% |
| !!! | ATGTTTTCCAACTTTTTTCT+TGG | - | chr6_2:72484357-72484376 | None:intergenic | 25.0% |
| ! | AACTATATAGGTTAACAAAC+GGG | + | chr6_2:72484419-72484438 | Msa0927910:five_prime_UTR | 25.0% |
| ! | TAGAGCAATAAATCGTAAAA+GGG | - | chr6_2:72484541-72484560 | None:intergenic | 25.0% |
| ! | ATAGAGCAATAAATCGTAAA+AGG | - | chr6_2:72484542-72484561 | None:intergenic | 25.0% |
| !!! | TCTTTCTAAACCCTATTTTT+TGG | + | chr6_2:72484617-72484636 | Msa0927910:intron | 25.0% |
| ! | GATTGATATGGTTAATTACT+TGG | + | chr6_2:72484758-72484777 | Msa0927910:intron | 25.0% |
| ! | TAAATTAAGCTGCAAATAAG+TGG | - | chr6_2:72484838-72484857 | None:intergenic | 25.0% |
| ! | TAAATTGCTGTGTAACTATA+AGG | + | chr6_2:72485329-72485348 | Msa0927910:intron | 25.0% |
| !! | ATACTTGACATTTTTATGCT+TGG | + | chr6_2:72485397-72485416 | Msa0927910:intron | 25.0% |
| !!! | CTATGCTTTTTTTTGTCTAA+TGG | + | chr6_2:72485668-72485687 | Msa0927910:intron | 25.0% |
| ! | GAAATTTGTGATGTAATAGT+AGG | + | chr6_2:72485712-72485731 | Msa0927910:intron | 25.0% |
| ! | ACATATTACTATTGCTTCAA+GGG | - | chr6_2:72485788-72485807 | None:intergenic | 25.0% |
| ! | AAAACCAAAATAAAGGATTG+TGG | - | chr6_2:72485831-72485850 | None:intergenic | 25.0% |
| !!! | ACAATCCTTTATTTTGGTTT+TGG | + | chr6_2:72485830-72485849 | Msa0927910:intron | 25.0% |
| !!! | CAATCCTTTATTTTGGTTTT+GGG | + | chr6_2:72485831-72485850 | Msa0927910:intron | 25.0% |
| !! | CAGATTTTATGAACATCTAA+GGG | + | chr6_2:72486005-72486024 | Msa0927910:intron | 25.0% |
| !! | AGATTTTATGAACATCTAAG+GGG | + | chr6_2:72486006-72486025 | Msa0927910:intron | 25.0% |
| !!! | GTTTCTGTTGTTTTTATGTT+TGG | + | chr6_2:72486067-72486086 | Msa0927910:intron | 25.0% |
| ! | TGCAATAATGATGTTGTATT+TGG | + | chr6_2:72486233-72486252 | Msa0927910:intron | 25.0% |
| ! | TTGTGAATATGTTTACTTCA+AGG | + | chr6_2:72486506-72486525 | Msa0927910:exon | 25.0% |
| ! | TATTTAGTGTATGTTTGGTT+TGG | - | chr6_2:72487359-72487378 | None:intergenic | 25.0% |
| !! | TGTGAGAAAACAATTTTTCA+AGG | - | chr6_2:72487405-72487424 | None:intergenic | 25.0% |
| !!! | AGTAACTTTTGGAAATTGTT+TGG | - | chr6_2:72487682-72487701 | None:intergenic | 25.0% |
| !!! | TGCTTATTTTCACATTAGTT+TGG | - | chr6_2:72487738-72487757 | None:intergenic | 25.0% |
| !!! | GATTCTATTTTTCTCAGTTT+TGG | + | chr6_2:72487983-72488002 | Msa0927910:exon | 25.0% |
| GAAATTCCCAAGAAAAAAGT+TGG | + | chr6_2:72484347-72484366 | Msa0927910:five_prime_UTR | 30.0% | |
| !! | TAAACCAAGAGTGTTTCATT+AGG | + | chr6_2:72484444-72484463 | Msa0927910:five_prime_UTR | 30.0% |
| !! | AAACCAAGAGTGTTTCATTA+GGG | + | chr6_2:72484445-72484464 | Msa0927910:five_prime_UTR | 30.0% |
| CATCGTTGTACCAAAAAATA+GGG | - | chr6_2:72484630-72484649 | None:intergenic | 30.0% | |
| TCATCGTTGTACCAAAAAAT+AGG | - | chr6_2:72484631-72484650 | None:intergenic | 30.0% | |
| !!! | TTTTGTTGCACTGATTGATA+TGG | + | chr6_2:72484746-72484765 | Msa0927910:intron | 30.0% |
| TGTAACCTAACATGAATCTT+AGG | + | chr6_2:72484792-72484811 | Msa0927910:intron | 30.0% | |
| GTAACCTAACATGAATCTTA+GGG | + | chr6_2:72484793-72484812 | Msa0927910:intron | 30.0% | |
| !!! | GATAAAGGCTCTGTTTTTAT+TGG | + | chr6_2:72484893-72484912 | Msa0927910:intron | 30.0% |
| TTATACACAAGTGCTTATCA+TGG | + | chr6_2:72485039-72485058 | Msa0927910:intron | 30.0% | |
| AATTTAGACTAAGGGCTATT+TGG | - | chr6_2:72485315-72485334 | None:intergenic | 30.0% | |
| TACACAGCAATTTAGACTAA+GGG | - | chr6_2:72485323-72485342 | None:intergenic | 30.0% | |
| TTACACAGCAATTTAGACTA+AGG | - | chr6_2:72485324-72485343 | None:intergenic | 30.0% | |
| TGATAAAATACCACGATTAG+AGG | - | chr6_2:72485427-72485446 | None:intergenic | 30.0% | |
| ! | ATCCTGACATGTTGAATTTT+AGG | + | chr6_2:72485537-72485556 | Msa0927910:intron | 30.0% |
| CACATATTACTATTGCTTCA+AGG | - | chr6_2:72485789-72485808 | None:intergenic | 30.0% | |
| !! | ACTTCCACAATCCTTTATTT+TGG | + | chr6_2:72485824-72485843 | Msa0927910:intron | 30.0% |
| TTCTCCCAAAACCAAAATAA+AGG | - | chr6_2:72485838-72485857 | None:intergenic | 30.0% | |
| ! | GCAGATTTTATGAACATCTA+AGG | + | chr6_2:72486004-72486023 | Msa0927910:intron | 30.0% |
| !!! | TGTTTTCAATTTGTTGTTGC+AGG | + | chr6_2:72486670-72486689 | Msa0927910:intron | 30.0% |
| TTAGAAAGAATAACTGGCAA+AGG | - | chr6_2:72486997-72487016 | None:intergenic | 30.0% | |
| GACAGAATCGTAATAAAAGA+TGG | - | chr6_2:72487025-72487044 | None:intergenic | 30.0% | |
| CTGTAAAACTGAAGTTAATC+AGG | + | chr6_2:72487185-72487204 | Msa0927910:intron | 30.0% | |
| AACAAAAACTCACGATTACA+TGG | + | chr6_2:72487257-72487276 | Msa0927910:intron | 30.0% | |
| CTAATGAACCTTAAACTTGT+AGG | + | chr6_2:72487457-72487476 | Msa0927910:intron | 30.0% | |
| GATTACATCCTACAAGTTTA+AGG | - | chr6_2:72487468-72487487 | None:intergenic | 30.0% | |
| ATAGTTTACCTTCATGATCT+TGG | - | chr6_2:72487651-72487670 | None:intergenic | 30.0% | |
| !!! | TTCAAGCTTTGAGTAACTTT+TGG | - | chr6_2:72487693-72487712 | None:intergenic | 30.0% |
| ! | TCTTGTGTTTCTGTGTATAT+AGG | + | chr6_2:72487842-72487861 | Msa0927910:intron | 30.0% |
| ! | TCTGTGTATATAGGTGTTTT+TGG | + | chr6_2:72487851-72487870 | Msa0927910:intron | 30.0% |
| !! | CAGTATTGTTTTTCTCCTTT+GGG | - | chr6_2:72487878-72487897 | None:intergenic | 30.0% |
| !! | TCAGTATTGTTTTTCTCCTT+TGG | - | chr6_2:72487879-72487898 | None:intergenic | 30.0% |
| CACATAGCAAAAAAGTCATT+TGG | - | chr6_2:72488129-72488148 | None:intergenic | 30.0% | |
| !!! | CAAATGACTTTTTTGCTATG+TGG | + | chr6_2:72488127-72488146 | Msa0927910:three_prime_UTR | 30.0% |
| ! | ATGTGATATAACTTGTGTTG+CGG | + | chr6_2:72488213-72488232 | Msa0927910:three_prime_UTR | 30.0% |
| !!! | ATAGTTTTGGGCTTGTGTTT+GGG | - | chr6_2:72484405-72484424 | None:intergenic | 35.0% |
| !!! | TATAGTTTTGGGCTTGTGTT+TGG | - | chr6_2:72484406-72484425 | None:intergenic | 35.0% |
| ACACAAGCCCAAAACTATAT+AGG | + | chr6_2:72484407-72484426 | Msa0927910:five_prime_UTR | 35.0% | |
| AAACCCTAATGAAACACTCT+TGG | - | chr6_2:72484451-72484470 | None:intergenic | 35.0% | |
| TAGGATTTGTGAGACAGTTT+AGG | + | chr6_2:72484918-72484937 | Msa0927910:intron | 35.0% | |
| AACTTAACTTTGGGTCTGTT+TGG | - | chr6_2:72485099-72485118 | None:intergenic | 35.0% | |
| AGCATAAACATCAACACACA+AGG | - | chr6_2:72485504-72485523 | None:intergenic | 35.0% | |
| AGCCTAAAATTCAACATGTC+AGG | - | chr6_2:72485542-72485561 | None:intergenic | 35.0% | |
| CTTAAACAATGCTTTAACCG+AGG | - | chr6_2:72485621-72485640 | None:intergenic | 35.0% | |
| GCATTGTTTAAGTAGAAGCT+TGG | + | chr6_2:72485629-72485648 | Msa0927910:intron | 35.0% | |
| TAATAGTAGGCTTCACTATC+TGG | + | chr6_2:72485725-72485744 | Msa0927910:intron | 35.0% | |
| AACAGACCTGTAATGATTTG+CGG | + | chr6_2:72485973-72485992 | Msa0927910:intron | 35.0% | |
| CAACATCATTATTGCAGTAG+TGG | - | chr6_2:72486229-72486248 | None:intergenic | 35.0% | |
| ATGATGTTGTATTTGGACGT+CGG | + | chr6_2:72486240-72486259 | Msa0927910:intron | 35.0% | |
| !!! | ACACTTTTAGTTCTTCTGTC+TGG | + | chr6_2:72486306-72486325 | Msa0927910:intron | 35.0% |
| TCTGTCTGGTACTCAATATT+AGG | + | chr6_2:72486320-72486339 | Msa0927910:intron | 35.0% | |
| CTGGTACTCAATATTAGGTT+TGG | + | chr6_2:72486325-72486344 | Msa0927910:intron | 35.0% | |
| ! | TGCTGCTTATAGATCTTGTT+TGG | + | chr6_2:72486357-72486376 | Msa0927910:intron | 35.0% |
| CAATAAAAGCCTAAGAAGCA+AGG | - | chr6_2:72486414-72486433 | None:intergenic | 35.0% | |
| TTCAAGGAAGAAAATCAGCA+AGG | + | chr6_2:72486522-72486541 | Msa0927910:CDS | 35.0% | |
| AAGAAAATCAGCAAGGACAA+GGG | + | chr6_2:72486529-72486548 | Msa0927910:CDS | 35.0% | |
| ! | ACTATTGTTGTTGCTGTGAT+TGG | + | chr6_2:72486610-72486629 | Msa0927910:intron | 35.0% |
| TACATCAATTCTGCAGTGTA+AGG | + | chr6_2:72486749-72486768 | Msa0927910:intron | 35.0% | |
| GTGTAAGGATGTGTTCTTTA+TGG | + | chr6_2:72486764-72486783 | Msa0927910:intron | 35.0% | |
| TGGCTGTAGATAACAGAAAA+CGG | - | chr6_2:72486834-72486853 | None:intergenic | 35.0% | |
| GTGCAGTTAGAAAGAATAAC+TGG | - | chr6_2:72487003-72487022 | None:intergenic | 35.0% | |
| CGAGTAGAAGACAAAGAAAT+TGG | - | chr6_2:72487066-72487085 | None:intergenic | 35.0% | |
| ! | ATTCTGTTTTGCAATCTCCT+TGG | + | chr6_2:72487114-72487133 | Msa0927910:intron | 35.0% |
| GTCTAAGCATGTGTTTGATT+TGG | + | chr6_2:72487213-72487232 | Msa0927910:intron | 35.0% | |
| GATAAAGAGAAGCTACAAAG+TGG | - | chr6_2:72487288-72487307 | None:intergenic | 35.0% | |
| CGTACTAGATACAGAATTGA+TGG | + | chr6_2:72487623-72487642 | Msa0927910:CDS | 35.0% | |
| ! | AAACGTTTTCTGCAGTTTAC+AGG | + | chr6_2:72487910-72487929 | Msa0927910:CDS | 35.0% |
| GTGGTTTATCCAATCCAAAC+AGG | - | chr6_2:72484819-72484838 | None:intergenic | 40.0% | |
| !!! | GGCTCTGTTTTTATTGGCAT+AGG | + | chr6_2:72484899-72484918 | Msa0927910:intron | 40.0% |
| ! | ACAGACCTGTAATGATTTGC+GGG | + | chr6_2:72485974-72485993 | Msa0927910:intron | 40.0% |
| TCATACCCGCAAATCATTAC+AGG | - | chr6_2:72485982-72486001 | None:intergenic | 40.0% | |
| TGATGTTGTATTTGGACGTC+GGG | + | chr6_2:72486241-72486260 | Msa0927910:intron | 40.0% | |
| TGTTTGGTACTAATACTGCG+TGG | + | chr6_2:72486373-72486392 | Msa0927910:intron | 40.0% | |
| ! | TGATGATGACCTTGCTTCTT+AGG | + | chr6_2:72486402-72486421 | Msa0927910:intron | 40.0% |
| GAAGAAAATCAGCAAGGACA+AGG | + | chr6_2:72486528-72486547 | Msa0927910:CDS | 40.0% | |
| ! | ACTGACTCCTCAAATTCAGT+AGG | - | chr6_2:72486562-72486581 | None:intergenic | 40.0% |
| ACTGAATTTGAGGAGTCAGT+TGG | + | chr6_2:72486562-72486581 | Msa0927910:CDS | 40.0% | |
| !! | TCAGATCACTTTTGAGCTCA+TGG | - | chr6_2:72486721-72486740 | None:intergenic | 40.0% |
| !! | TACAGCCAAGTTGATGTTTC+TGG | + | chr6_2:72486846-72486865 | Msa0927910:intron | 40.0% |
| GGTTTCCAGAAACATCAACT+TGG | - | chr6_2:72486854-72486873 | None:intergenic | 40.0% | |
| AAATTCACGTCAAGCTCGTT+AGG | + | chr6_2:72486925-72486944 | Msa0927910:CDS | 40.0% | |
| AATTCACGTCAAGCTCGTTA+GGG | + | chr6_2:72486926-72486945 | Msa0927910:CDS | 40.0% | |
| GAGCTTGAGAAGAAATTCAG+CGG | + | chr6_2:72486948-72486967 | Msa0927910:CDS | 40.0% | |
| TGAGAAGAAATTCAGCGGAA+AGG | + | chr6_2:72486953-72486972 | Msa0927910:CDS | 40.0% | |
| AACTGAAGTTAATCAGGCTG+CGG | + | chr6_2:72487191-72487210 | Msa0927910:intron | 40.0% | |
| TGTTACCTGCTGAGATTGTT+GGG | + | chr6_2:72487597-72487616 | Msa0927910:CDS | 40.0% | |
| ! | TGATGGATCCAAGATCATGA+AGG | + | chr6_2:72487640-72487659 | Msa0927910:CDS | 40.0% |
| !!! | ATAGGTGTTTTTGGACCCAA+AGG | + | chr6_2:72487860-72487879 | Msa0927910:intron | 40.0% |
| CAGTTTACAGGAAACTCTCA+GGG | + | chr6_2:72487922-72487941 | Msa0927910:CDS | 40.0% | |
| GTTGAAGCTCTCTATGATTC+TGG | + | chr6_2:72488057-72488076 | Msa0927910:three_prime_UTR | 40.0% | |
| ATCTGCATCTTCTTCGGCTA+AGG | + | chr6_2:72484502-72484521 | Msa0927910:five_prime_UTR | 45.0% | |
| CAGGCCCTAAGATTCATGTT+AGG | - | chr6_2:72484800-72484819 | None:intergenic | 45.0% | |
| CATGAATCTTAGGGCCTGTT+TGG | + | chr6_2:72484802-72484821 | Msa0927910:intron | 45.0% | |
| ATCTTAGGGCCTGTTTGGAT+TGG | + | chr6_2:72484807-72484826 | Msa0927910:intron | 45.0% | |
| TCAAGGGAACGAGTCTGAAT+GGG | - | chr6_2:72485772-72485791 | None:intergenic | 45.0% | |
| TTCAAGGGAACGAGTCTGAA+TGG | - | chr6_2:72485773-72485792 | None:intergenic | 45.0% | |
| AGCGAGGGGAACACAATTAT+AGG | - | chr6_2:72486204-72486223 | None:intergenic | 45.0% | |
| !! | ATTGCAGTAGTGGATAGCGA+GGG | - | chr6_2:72486219-72486238 | None:intergenic | 45.0% |
| !! | TATTGCAGTAGTGGATAGCG+AGG | - | chr6_2:72486220-72486239 | None:intergenic | 45.0% |
| ATTTGAGGAGTCAGTTGGAC+AGG | + | chr6_2:72486567-72486586 | Msa0927910:CDS | 45.0% | |
| !! | GTTGCAGGCTTTGTTTGATC+TGG | + | chr6_2:72486685-72486704 | Msa0927910:intron | 45.0% |
| !! | TGATGTTTCTGGAAACCGCA+AGG | + | chr6_2:72486857-72486876 | Msa0927910:CDS | 45.0% |
| TATGGATAACCACAGCCTTG+CGG | - | chr6_2:72486875-72486894 | None:intergenic | 45.0% | |
| TCCATATCCCCTACAGATTG+AGG | + | chr6_2:72486889-72486908 | Msa0927910:CDS | 45.0% | |
| TCCTCAATCTGTAGGGGATA+TGG | - | chr6_2:72486893-72486912 | None:intergenic | 45.0% | |
| TATCCCCTACAGATTGAGGA+AGG | + | chr6_2:72486893-72486912 | Msa0927910:CDS | 45.0% | |
| ATCCCCTACAGATTGAGGAA+GGG | + | chr6_2:72486894-72486913 | Msa0927910:CDS | 45.0% | |
| AACCCCTTCCTCAATCTGTA+GGG | - | chr6_2:72486900-72486919 | None:intergenic | 45.0% | |
| ! | CGAGCTTGACGTGAATTTTG+CGG | - | chr6_2:72486923-72486942 | None:intergenic | 45.0% |
| ATGCCTTGTAATCATGCGAG+TGG | + | chr6_2:72487320-72487339 | Msa0927910:intron | 45.0% | |
| TTGCCACTCGCATGATTACA+AGG | - | chr6_2:72487326-72487345 | None:intergenic | 45.0% | |
| ATGTAATCCTCATTGCCACC+AGG | + | chr6_2:72487480-72487499 | Msa0927910:CDS | 45.0% | |
| GTGTTACCTGCTGAGATTGT+TGG | + | chr6_2:72487596-72487615 | Msa0927910:CDS | 45.0% | |
| GCAGTTTACAGGAAACTCTC+AGG | + | chr6_2:72487921-72487940 | Msa0927910:CDS | 45.0% | |
| GTTTGAGTACCCTGTTACTG+AGG | + | chr6_2:72487956-72487975 | Msa0927910:CDS | 45.0% | |
| GAATCTACGCCTCAGTAACA+GGG | - | chr6_2:72487968-72487987 | None:intergenic | 45.0% | |
| AGAATCTACGCCTCAGTAAC+AGG | - | chr6_2:72487969-72487988 | None:intergenic | 45.0% | |
| AGCCGCATCTGCATCTTCTT+CGG | + | chr6_2:72484496-72484515 | Msa0927910:five_prime_UTR | 50.0% | |
| AGCCGAAGAAGATGCAGATG+CGG | - | chr6_2:72484501-72484520 | None:intergenic | 50.0% | |
| GCTTGGATGTCCTCTAATCG+TGG | + | chr6_2:72485414-72485433 | Msa0927910:intron | 50.0% | |
| GCTTCACTATCTGGTCGATG+CGG | + | chr6_2:72485734-72485753 | Msa0927910:intron | 50.0% | |
| !! | TTGCAGTAGTGGATAGCGAG+GGG | - | chr6_2:72486218-72486237 | None:intergenic | 50.0% |
| CGCTGAGCCTACTGAATTTG+AGG | + | chr6_2:72486552-72486571 | Msa0927910:CDS | 50.0% | |
| TCCCCTACAGATTGAGGAAG+GGG | + | chr6_2:72486895-72486914 | Msa0927910:CDS | 50.0% | |
| ACCCCTTCCTCAATCTGTAG+GGG | - | chr6_2:72486899-72486918 | None:intergenic | 50.0% | |
| GAACCCCTTCCTCAATCTGT+AGG | - | chr6_2:72486901-72486920 | None:intergenic | 50.0% | |
| ATCGTCAGGCCACCAAAGAA+AGG | + | chr6_2:72487506-72487525 | Msa0927910:CDS | 50.0% | |
| CGTTTCCCAACAATCTCAGC+AGG | - | chr6_2:72487605-72487624 | None:intergenic | 50.0% | |
| ! | TTCTGGAAACCGCAAGGCTG+TGG | + | chr6_2:72486863-72486882 | Msa0927910:CDS | 55.0% |
| CGATTCTCCTGGTGGCAATG+AGG | - | chr6_2:72487490-72487509 | None:intergenic | 55.0% | |
| TTGCCACCAGGAGAATCGTC+AGG | + | chr6_2:72487492-72487511 | Msa0927910:CDS | 55.0% | |
| TGAGCAGCGGAGCCTTTCTT+TGG | - | chr6_2:72487521-72487540 | None:intergenic | 55.0% | |
| CGTGGACAGCAGTGAGTGTA+CGG | - | chr6_2:72487556-72487575 | None:intergenic | 55.0% | |
| TACACTCACTGCTGTCCACG+AGG | + | chr6_2:72487556-72487575 | Msa0927910:CDS | 55.0% | |
| TGGCCTGACGATTCTCCTGG+TGG | - | chr6_2:72487498-72487517 | None:intergenic | 60.0% | |
| TGGTGGCCTGACGATTCTCC+TGG | - | chr6_2:72487501-72487520 | None:intergenic | 60.0% | |
| GCAGCGGAGCCTTTCTTTGG+TGG | - | chr6_2:72487518-72487537 | None:intergenic | 60.0% | |
| TGTCCACGAGGCAATGCTCG+AGG | + | chr6_2:72487568-72487587 | Msa0927910:CDS | 60.0% | |
| ! | CATCCTCGAGCATTGCCTCG+TGG | - | chr6_2:72487574-72487593 | None:intergenic | 60.0% |
| GCAGTGAGTGTACGGCTGCG+TGG | - | chr6_2:72487548-72487567 | None:intergenic | 65.0% | |
| GCTGCGTGGACGCTGAGCAG+CGG | - | chr6_2:72487534-72487553 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 72484323 | 72488268 | 72484323 | ID=Msa0927910;Name=Msa0927910 |
| chr6_2 | mRNA | 72484323 | 72488268 | 72484323 | ID=Msa0927910-mRNA-1;Parent=Msa0927910;Name=Msa0927910-mRNA-1;_AED=0.04;_eAED=0.04;_QI=216|1|1|1|0.8|0.66|6|285|191 |
| chr6_2 | exon | 72484323 | 72484523 | 72484323 | ID=Msa0927910-mRNA-1:exon:12257;Parent=Msa0927910-mRNA-1 |
| chr6_2 | exon | 72486499 | 72486588 | 72486499 | ID=Msa0927910-mRNA-1:exon:12258;Parent=Msa0927910-mRNA-1 |
| chr6_2 | exon | 72486692 | 72486765 | 72486692 | ID=Msa0927910-mRNA-1:exon:12259;Parent=Msa0927910-mRNA-1 |
| chr6_2 | exon | 72486851 | 72486974 | 72486851 | ID=Msa0927910-mRNA-1:exon:12260;Parent=Msa0927910-mRNA-1 |
| chr6_2 | exon | 72487479 | 72487661 | 72487479 | ID=Msa0927910-mRNA-1:exon:12261;Parent=Msa0927910-mRNA-1 |
| chr6_2 | exon | 72487864 | 72488268 | 72487864 | ID=Msa0927910-mRNA-1:exon:12262;Parent=Msa0927910-mRNA-1 |
| chr6_2 | five_prime_UTR | 72484323 | 72484523 | 72484323 | ID=Msa0927910-mRNA-1:five_prime_utr;Parent=Msa0927910-mRNA-1 |
| chr6_2 | five_prime_UTR | 72486499 | 72486513 | 72486499 | ID=Msa0927910-mRNA-1:five_prime_utr;Parent=Msa0927910-mRNA-1 |
| chr6_2 | CDS | 72486514 | 72486588 | 72486514 | ID=Msa0927910-mRNA-1:cds;Parent=Msa0927910-mRNA-1 |
| chr6_2 | CDS | 72486692 | 72486765 | 72486692 | ID=Msa0927910-mRNA-1:cds;Parent=Msa0927910-mRNA-1 |
| chr6_2 | CDS | 72486851 | 72486974 | 72486851 | ID=Msa0927910-mRNA-1:cds;Parent=Msa0927910-mRNA-1 |
| chr6_2 | CDS | 72487479 | 72487661 | 72487479 | ID=Msa0927910-mRNA-1:cds;Parent=Msa0927910-mRNA-1 |
| chr6_2 | CDS | 72487864 | 72487983 | 72487864 | ID=Msa0927910-mRNA-1:cds;Parent=Msa0927910-mRNA-1 |
| chr6_2 | three_prime_UTR | 72487984 | 72488268 | 72487984 | ID=Msa0927910-mRNA-1:three_prime_utr;Parent=Msa0927910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
