AlfalfaGEDB | Msa1079910

M. sativa cultivar zhongmu-4 / Msa1079910

KEGG: K02896
GO: GO:0000003 GO:0000027 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0023052 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048367 GO:0048438 GO:0048467 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065003 GO:0065007 GO:0070013 GO:0070887 GO:0070925 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0090567 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902626 GO:1990904
PFAM: PF01246.23

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1079910	XP_013450065.1	98.758	161	2	0	4	164	3	163	8.85e-110	319

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1079910	sp\|O65743\|RL24_CICAR	95.031	161	7	1	4	163	3	163	5.66e-107	305

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1079910	I3SKQ8	98.758	161	2	0	4	164	3	163	4.23e-110	319

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0087910	Msa1079910	0.845053	5.162163e-59	-8.615850e-47
Msa0114600	Msa1079910	0.830978	2.165163e-55	-8.615850e-47
Msa0602900	Msa1079910	0.856540	3.002115e-62	-8.615850e-47
Msa0605890	Msa1079910	0.839618	1.422531e-57	-8.615850e-47
Msa0643960	Msa1079910	0.858883	6.067137e-63	-8.615850e-47
Msa0663400	Msa1079910	0.801910	7.204137e-49	-8.615850e-47
Msa0694400	Msa1079910	0.853419	2.419200e-61	-8.615850e-47
Msa0704860	Msa1079910	0.810721	1.001134e-50	-8.615850e-47
Msa0741510	Msa1079910	0.838350	3.030029e-57	-8.615850e-47
Msa0749000	Msa1079910	0.801051	1.080447e-48	-8.615850e-47
Msa0796490	Msa1079910	0.815701	8.077803e-52	-8.615850e-47
Msa0128330	Msa1079910	0.863149	3.059611e-64	-8.615850e-47
Msa0134580	Msa1079910	0.803238	3.835660e-49	-8.615850e-47
Msa0167860	Msa1079910	0.842937	1.905782e-58	-8.615850e-47
Msa0174580	Msa1079910	0.862545	4.696544e-64	-8.615850e-47
Msa0187810	Msa1079910	0.814633	1.394825e-51	-8.615850e-47
Msa0191550	Msa1079910	0.812855	3.436691e-51	-8.615850e-47
Msa0210330	Msa1079910	0.811723	6.068969e-51	-8.615850e-47
Msa0235050	Msa1079910	0.830215	3.329070e-55	-8.615850e-47
Msa0369410	Msa1079910	0.807312	5.375561e-50	-8.615850e-47
Msa0426090	Msa1079910	0.817628	2.987817e-52	-8.615850e-47
Msa0426250	Msa1079910	0.859270	4.646858e-63	-8.615850e-47
Msa0472480	Msa1079910	0.802443	5.597215e-49	-8.615850e-47
Msa1013430	Msa1079910	0.806512	7.934880e-50	-8.615850e-47
Msa1040160	Msa1079910	0.822066	2.888996e-53	-8.615850e-47
Msa1079910	Msa1079920	0.895177	1.228024e-75	-8.615850e-47
Msa1079910	Msa1083370	0.813298	2.747293e-51	-8.615850e-47
Msa1079910	Msa1085850	0.800681	1.285932e-48	-8.615850e-47
Msa1079910	Msa1093500	0.875425	3.114036e-68	-8.615850e-47
Msa1079910	Msa1124850	0.887431	1.435712e-72	-8.615850e-47
Msa1079910	Msa1128120	0.818250	2.161717e-52	-8.615850e-47
Msa1079910	Msa1167550	0.864640	1.051459e-64	-8.615850e-47
Msa1079910	Msa1180000	0.821516	3.873396e-53	-8.615850e-47
Msa1079910	Msa1208330	0.816686	4.865863e-52	-8.615850e-47
Msa1079910	Msa1270640	0.816890	4.379163e-52	-8.615850e-47
Msa1079910	Msa1270710	0.813670	2.276224e-51	-8.615850e-47
Msa1079910	Msa1341780	0.807644	4.569625e-50	-8.615850e-47
Msa1079910	Msa1351020	0.825617	4.251765e-54	-8.615850e-47
Msa1079910	Msa1351910	0.825415	4.745752e-54	-8.615850e-47
Msa1079910	Msa1385480	0.861632	8.949424e-64	-8.615850e-47
Msa1079910	Msa1463570	0.852975	3.243818e-61	-8.615850e-47
Msa0277600	Msa1079910	0.857374	1.704856e-62	-8.615850e-47
Msa0315430	Msa1079910	0.805683	1.185637e-49	-8.615850e-47
Msa0342850	Msa1079910	0.815010	1.150934e-51	-8.615850e-47
Msa0547920	Msa1079910	0.859835	3.141505e-63	-8.615850e-47
Msa0554210	Msa1079910	0.805473	1.312690e-49	-8.615850e-47
Msa0568380	Msa1079910	0.804769	1.842529e-49	-8.615850e-47
Msa0573550	Msa1079910	0.817813	2.713845e-52	-8.615850e-47
Msa0902220	Msa1079910	0.802749	4.840085e-49	-8.615850e-47
Msa0902730	Msa1079910	0.862117	6.358385e-64	-8.615850e-47
Msa0927910	Msa1079910	0.802230	6.191620e-49	-8.615850e-47
Msa0929700	Msa1079910	0.820996	5.105531e-53	-8.615850e-47
Msa0930550	Msa1079910	0.823429	1.391972e-53	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1079910	MtrunA17_Chr7g0265501	98.758	161	2	0	4	164	3	163	8.14e-114	319
Msa1079910	MtrunA17_Chr7g0265491	98.758	161	2	0	4	164	3	163	8.14e-114	319
Msa1079910	MtrunA17_Chr1g0179601	93.919	148	8	1	4	150	3	150	1.66e-86	250
Msa1079910	MtrunA17_Chr4g0027111	37.895	95	57	1	4	96	1	95	3.68e-18	76.6
Msa1079910	MtrunA17_Chr4g0058481	87.805	41	4	1	57	97	1	40	1.04e-16	69.7
Msa1079910	MtrunA17_Chr2g0321011	35.484	93	58	1	4	94	1	93	1.08e-14	67.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1079910	AT2G36620.1	87.742	155	18	1	4	157	3	157	5.26e-85	247
Msa1079910	AT3G53020.1	88.435	147	16	1	4	150	3	148	4.11e-80	234
Msa1079910	AT2G44860.2	37.500	128	67	5	4	127	1	119	1.41e-17	75.5
Msa1079910	AT2G44860.1	37.500	128	67	5	4	127	1	119	1.41e-17	75.5

Find 71 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGCAAAATCCATTTAATATC+TGG	0.154677	7_2:-79191117	None:intergenic
GAGAGAACCCAGATATTAAA+TGG	0.232740	7_2:+79191109	Msa1079910:three_prime_UTR
AGATGCTACTTCGGCTTTCT+TGG	0.236901	7_2:-79190877	None:intergenic
CCTAAAATGGGCGGTGGTGG+TGG	0.259183	7_2:+79190954	Msa1079910:CDS
TATGCCCAAGGGTCCTAAAA+TGG	0.286938	7_2:+79190941	Msa1079910:CDS
CTTGGCTTTCTTCTCATCCT+TGG	0.290844	7_2:-79190859	None:intergenic
ATCTCGAACCTCGGGCTTCT+CGG	0.307520	7_2:-79190588	None:intergenic
CTTGTGCTGCTTTCTGTACA+TGG	0.329814	7_2:-79190231	None:intergenic
GAAAACAAATTATATTTAGA+TGG	0.332338	7_2:-79191006	None:intergenic
CTGATCCTGGTTACAATGTT+TGG	0.332668	7_2:+79191246	Msa1079910:three_prime_UTR
GCAGTTCAAGCTAGGACTTT+AGG	0.338395	7_2:-79191211	None:intergenic
AATCATAATAAAGATGTATT+AGG	0.340985	7_2:+79191301	Msa1079910:three_prime_UTR
TGATAAAACAGTAACATAAA+AGG	0.351434	7_2:-79191066	None:intergenic
GGACCTGGAGTATGGCTTCT+TGG	0.357806	7_2:-79190525	None:intergenic
GAAAGCCGAAGTAGCATCTA+AGG	0.360444	7_2:+79190881	Msa1079910:CDS
CAATGATCCCTTGCTATGTT+AGG	0.376919	7_2:+79191163	Msa1079910:three_prime_UTR
ATAAATCTGATCCCTCTTCC+TGG	0.395884	7_2:-79189978	None:intergenic
GCAGTCCATGTAAGCTTTGA+AGG	0.396337	7_2:-79190209	None:intergenic
GCATCTAAGGCACAAAAGTC+AGG	0.405098	7_2:+79190894	Msa1079910:CDS
GACAGAGTTCAGTTCTGAAA+TGG	0.406387	7_2:-79189932	None:intergenic
CCAACAATGGACCTGGAGTA+TGG	0.414209	7_2:-79190533	None:intergenic
ATCAAGCAAACAAAATATAT+CGG	0.421334	7_2:-79191040	None:intergenic
ATTTATTCGTAGTGATTCTC+AGG	0.428494	7_2:+79189995	Msa1079910:CDS
CCTAGCAGCATCTCGAACCT+CGG	0.438375	7_2:-79190597	None:intergenic
GCAAAATCCATTTAATATCT+GGG	0.439847	7_2:-79191116	None:intergenic
GGTCCTAAAATGGGCGGTGG+TGG	0.445895	7_2:+79190951	Msa1079910:CDS
CTTCAAAACTTAACAACTGA+TGG	0.449431	7_2:+79191340	Msa1079910:three_prime_UTR
TTGTGAACTCAAAATGTAAG+AGG	0.457107	7_2:+79190165	Msa1079910:CDS
CTAACATAGCAAGGGATCAT+TGG	0.458852	7_2:-79191162	None:intergenic
TTGAAGGCTTCAACTTGTTG+TGG	0.467148	7_2:-79190193	None:intergenic
TGAAGCCTTCAAAGCTTACA+TGG	0.470130	7_2:+79190204	Msa1079910:CDS
GCAAAGATTTACCCAGGAAG+AGG	0.473275	7_2:+79189966	Msa1079910:CDS
ATGCCCAAGGGTCCTAAAAT+GGG	0.479062	7_2:+79190942	Msa1079910:CDS
CTGCTAGGGAAGCTGCTCTT+CGG	0.488937	7_2:+79190612	Msa1079910:CDS
CCATACTCCAGGTCCATTGT+TGG	0.499932	7_2:+79190533	Msa1079910:CDS
TCAATCCCGCAGTGAAATCA+AGG	0.506619	7_2:+79190821	Msa1079910:intron
GGCAAATATGTTCCCTACCA+TGG	0.512724	7_2:+79191267	Msa1079910:three_prime_UTR
CTAGCAGCATCTCGAACCTC+GGG	0.515819	7_2:-79190596	None:intergenic
CTAAAATGGGCGGTGGTGGT+GGG	0.525722	7_2:+79190955	Msa1079910:CDS
CTCAAGAAGCTGTGAAGAAG+AGG	0.530274	7_2:+79190492	Msa1079910:CDS
CCGAGGTTCGAGATGCTGCT+AGG	0.531808	7_2:+79190597	Msa1079910:CDS
CGAGGTTCGAGATGCTGCTA+GGG	0.538000	7_2:+79190598	Msa1079910:CDS
ATGATTTGCAGCTGCCTCCA+TGG	0.538155	7_2:-79191284	None:intergenic
TTGTGCCTTAGATGCTACTT+CGG	0.538791	7_2:-79190886	None:intergenic
AGGGAAAGGCAATGTTCAGA+AGG	0.551183	7_2:+79190914	Msa1079910:CDS
TTTGCAGCTGCCTCCATGGT+AGG	0.553292	7_2:-79191280	None:intergenic
AGTGCCAAGCAGTTCAAGCT+AGG	0.554084	7_2:-79191219	None:intergenic
CCTGGAGTATGGCTTCTTGG+TGG	0.554085	7_2:-79190522	None:intergenic
TAAATCTGATCCCTCTTCCT+GGG	0.554260	7_2:-79189977	None:intergenic
TTGCAGCTGCCTCCATGGTA+GGG	0.564798	7_2:-79191279	None:intergenic
AAGTCCTAGCTTGAACTGCT+TGG	0.572736	7_2:+79191215	Msa1079910:three_prime_UTR
TTCAAGTGTAGCACCAACAA+TGG	0.581573	7_2:-79190546	None:intergenic
AAGGGTCCTAAAATGGGCGG+TGG	0.584819	7_2:+79190948	Msa1079910:CDS
TCAGAAGGGTGCTATGCCCA+AGG	0.589737	7_2:+79190929	Msa1079910:CDS
CAAAGATTTACCCAGGAAGA+GGG	0.595056	7_2:+79189967	Msa1079910:CDS
ACTGAACTCTGTCGATTCAG+TGG	0.599671	7_2:+79189942	Msa1079910:CDS
CCACCAAGAAGCCATACTCC+AGG	0.600767	7_2:+79190522	Msa1079910:CDS
AAGGCACAAAAGTCAGGGAA+AGG	0.600921	7_2:+79190900	Msa1079910:CDS
CAGAAGGGTGCTATGCCCAA+GGG	0.602938	7_2:+79190930	Msa1079910:CDS
AGTATGGCTTCTTGGTGGCA+CGG	0.604625	7_2:-79190517	None:intergenic
CATCTAAGGCACAAAAGTCA+GGG	0.612277	7_2:+79190895	Msa1079910:CDS
TGTAGCACCAACAATGGACC+TGG	0.616016	7_2:-79190540	None:intergenic
ATTTGCCAAACATTGTAACC+AGG	0.635652	7_2:-79191251	None:intergenic
GAAAAGAACCGAGAAGCCCG+AGG	0.642434	7_2:+79190580	Msa1079910:CDS
AGTGGCGCAAAGATTTACCC+AGG	0.643624	7_2:+79189960	Msa1079910:CDS
GTACAGAAAGCAGCACAAGA+AGG	0.650232	7_2:+79190235	Msa1079910:CDS
CCCAAGGGTCCTAAAATGGG+CGG	0.653433	7_2:+79190945	Msa1079910:CDS
GGGAAAGGCAATGTTCAGAA+GGG	0.656870	7_2:+79190915	Msa1079910:CDS
CCCGCAGTGAAATCAAGGAG+AGG	0.678239	7_2:+79190826	Msa1079910:intron
GGAGAGGATAAAGAAAACCA+AGG	0.682479	7_2:+79190842	Msa1079910:CDS
AAATATGTTCCCTACCATGG+AGG	0.703445	7_2:+79191270	Msa1079910:three_prime_UTR

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	GAAAAAAAAAAAAAAAAAAG+AGG	-	chr7_2:79190672-79190691	None:intergenic	10.0%
!!	GAAAAAAAAAAAAAAAAAAG+AGG	-	chr7_2:79190672-79190691	None:intergenic	10.0%
!!!	ATCTTAGTTTTATTGATATA+AGG	+	chr7_2:79190107-79190126	Msa1079910:intron	15.0%
!!!	GTTTTTTTTATTGTTTTTAC+AGG	+	chr7_2:79190133-79190152	Msa1079910:intron	15.0%
!!	GAAAACAAATTATATTTAGA+TGG	-	chr7_2:79191009-79191028	None:intergenic	15.0%
!!	AATCATAATAAAGATGTATT+AGG	+	chr7_2:79191301-79191320	Msa1079910:three_prime_UTR	15.0%
!!!	ATCTTAGTTTTATTGATATA+AGG	+	chr7_2:79190107-79190126	Msa1079910:intron	15.0%
!!!	GTTTTTTTTATTGTTTTTAC+AGG	+	chr7_2:79190133-79190152	Msa1079910:intron	15.0%
!!	GAAAACAAATTATATTTAGA+TGG	-	chr7_2:79191009-79191028	None:intergenic	15.0%
!!	AATCATAATAAAGATGTATT+AGG	+	chr7_2:79191301-79191320	Msa1079910:three_prime_UTR	15.0%
!!	ATCAAGCAAACAAAATATAT+CGG	-	chr7_2:79191043-79191062	None:intergenic	20.0%
!!	TGATAAAACAGTAACATAAA+AGG	-	chr7_2:79191069-79191088	None:intergenic	20.0%
!!!	TGTTTTATCAAACTTATGTT+TGG	+	chr7_2:79191079-79191098	Msa1079910:three_prime_UTR	20.0%
!!	ATCAAGCAAACAAAATATAT+CGG	-	chr7_2:79191043-79191062	None:intergenic	20.0%
!!	TGATAAAACAGTAACATAAA+AGG	-	chr7_2:79191069-79191088	None:intergenic	20.0%
!!!	TGTTTTATCAAACTTATGTT+TGG	+	chr7_2:79191079-79191098	Msa1079910:three_prime_UTR	20.0%
!!!	AAGCTTAATTTAGCTTTACA+CGG	-	chr7_2:79190310-79190329	None:intergenic	25.0%
!	AGTAGTAAAATTACTAGACA+AGG	-	chr7_2:79190423-79190442	None:intergenic	25.0%
!	ATTTAGATGGTAACCAAAAA+TGG	-	chr7_2:79190996-79191015	None:intergenic	25.0%
!	GCAAAATCCATTTAATATCT+GGG	-	chr7_2:79191119-79191138	None:intergenic	25.0%
!	AGCAAAATCCATTTAATATC+TGG	-	chr7_2:79191120-79191139	None:intergenic	25.0%
!!!	TTTTTTAGCACAAAGTTTTG+TGG	+	chr7_2:79191188-79191207	Msa1079910:three_prime_UTR	25.0%
!!!	AAGCTTAATTTAGCTTTACA+CGG	-	chr7_2:79190310-79190329	None:intergenic	25.0%
!	AGTAGTAAAATTACTAGACA+AGG	-	chr7_2:79190423-79190442	None:intergenic	25.0%
!	ATTTAGATGGTAACCAAAAA+TGG	-	chr7_2:79190996-79191015	None:intergenic	25.0%
!	GCAAAATCCATTTAATATCT+GGG	-	chr7_2:79191119-79191138	None:intergenic	25.0%
!	AGCAAAATCCATTTAATATC+TGG	-	chr7_2:79191120-79191139	None:intergenic	25.0%
!!!	TTTTTTAGCACAAAGTTTTG+TGG	+	chr7_2:79191188-79191207	Msa1079910:three_prime_UTR	25.0%
	ATTTATTCGTAGTGATTCTC+AGG	+	chr7_2:79189995-79190014	Msa1079910:CDS	30.0%
	GAGATAAAAATGACTCATGT+TGG	+	chr7_2:79190019-79190038	Msa1079910:intron	30.0%
!!!	AAATGACTCATGTTGGTTTT+TGG	+	chr7_2:79190026-79190045	Msa1079910:intron	30.0%
!!!	TACATTTTGAGTTCACAAAG+AGG	-	chr7_2:79190163-79190182	None:intergenic	30.0%
	TTGTGAACTCAAAATGTAAG+AGG	+	chr7_2:79190165-79190184	Msa1079910:CDS	30.0%
	AAAGAGTCGGCATAATAAAA+AGG	-	chr7_2:79190645-79190664	None:intergenic	30.0%
!	GCGTTAAGTTTTTCCATTTT+TGG	+	chr7_2:79190980-79190999	Msa1079910:exon	30.0%
	AAAAAGACCTAACATAGCAA+GGG	-	chr7_2:79191173-79191192	None:intergenic	30.0%
	AAAAAAGACCTAACATAGCA+AGG	-	chr7_2:79191174-79191193	None:intergenic	30.0%
	CTTCAAAACTTAACAACTGA+TGG	+	chr7_2:79191340-79191359	Msa1079910:three_prime_UTR	30.0%
	ATTTATTCGTAGTGATTCTC+AGG	+	chr7_2:79189995-79190014	Msa1079910:CDS	30.0%
	GAGATAAAAATGACTCATGT+TGG	+	chr7_2:79190019-79190038	Msa1079910:intron	30.0%
!!!	AAATGACTCATGTTGGTTTT+TGG	+	chr7_2:79190026-79190045	Msa1079910:intron	30.0%
!!!	TACATTTTGAGTTCACAAAG+AGG	-	chr7_2:79190163-79190182	None:intergenic	30.0%
	TTGTGAACTCAAAATGTAAG+AGG	+	chr7_2:79190165-79190184	Msa1079910:CDS	30.0%
	AAAGAGTCGGCATAATAAAA+AGG	-	chr7_2:79190645-79190664	None:intergenic	30.0%
!	GCGTTAAGTTTTTCCATTTT+TGG	+	chr7_2:79190980-79190999	Msa1079910:exon	30.0%
	AAAAAGACCTAACATAGCAA+GGG	-	chr7_2:79191173-79191192	None:intergenic	30.0%
	AAAAAAGACCTAACATAGCA+AGG	-	chr7_2:79191174-79191193	None:intergenic	30.0%
	CTTCAAAACTTAACAACTGA+TGG	+	chr7_2:79191340-79191359	Msa1079910:three_prime_UTR	30.0%
	AATGTAACTAGGTTCATGGA+TGG	-	chr7_2:79190356-79190375	None:intergenic	35.0%
	CAACAATGTAACTAGGTTCA+TGG	-	chr7_2:79190360-79190379	None:intergenic	35.0%
	TGAACCTAGTTACATTGTTG+TGG	+	chr7_2:79190360-79190379	Msa1079910:intron	35.0%
	GTAACCACAACAATGTAACT+AGG	-	chr7_2:79190367-79190386	None:intergenic	35.0%
	CAAGGCTATCTCATAGAATT+AGG	-	chr7_2:79190405-79190424	None:intergenic	35.0%
	ATATTATGCATCTGTTGTGC+AGG	+	chr7_2:79190463-79190482	Msa1079910:intron	35.0%
	AAAAAGAGGTCTCAAAGAGT+CGG	-	chr7_2:79190658-79190677	None:intergenic	35.0%
	GAGAGAACCCAGATATTAAA+TGG	+	chr7_2:79191109-79191128	Msa1079910:three_prime_UTR	35.0%
	ATTTGCCAAACATTGTAACC+AGG	-	chr7_2:79191254-79191273	None:intergenic	35.0%
	AATGTAACTAGGTTCATGGA+TGG	-	chr7_2:79190356-79190375	None:intergenic	35.0%
	CAACAATGTAACTAGGTTCA+TGG	-	chr7_2:79190360-79190379	None:intergenic	35.0%
	TGAACCTAGTTACATTGTTG+TGG	+	chr7_2:79190360-79190379	Msa1079910:intron	35.0%
	GTAACCACAACAATGTAACT+AGG	-	chr7_2:79190367-79190386	None:intergenic	35.0%
	CAAGGCTATCTCATAGAATT+AGG	-	chr7_2:79190405-79190424	None:intergenic	35.0%
	ATATTATGCATCTGTTGTGC+AGG	+	chr7_2:79190463-79190482	Msa1079910:intron	35.0%
	AAAAAGAGGTCTCAAAGAGT+CGG	-	chr7_2:79190658-79190677	None:intergenic	35.0%
	GAGAGAACCCAGATATTAAA+TGG	+	chr7_2:79191109-79191128	Msa1079910:three_prime_UTR	35.0%
	ATTTGCCAAACATTGTAACC+AGG	-	chr7_2:79191254-79191273	None:intergenic	35.0%
!!	GACAGAGTTCAGTTCTGAAA+TGG	-	chr7_2:79189935-79189954	None:intergenic	40.0%
	CAAAGATTTACCCAGGAAGA+GGG	+	chr7_2:79189967-79189986	Msa1079910:CDS	40.0%
	TAAATCTGATCCCTCTTCCT+GGG	-	chr7_2:79189980-79189999	None:intergenic	40.0%
	ATAAATCTGATCCCTCTTCC+TGG	-	chr7_2:79189981-79190000	None:intergenic	40.0%
!!	TTGAAGGCTTCAACTTGTTG+TGG	-	chr7_2:79190196-79190215	None:intergenic	40.0%
	TGAAGCCTTCAAAGCTTACA+TGG	+	chr7_2:79190204-79190223	Msa1079910:CDS	40.0%
	TTCAAGTGTAGCACCAACAA+TGG	-	chr7_2:79190549-79190568	None:intergenic	40.0%
	GGAGAGGATAAAGAAAACCA+AGG	+	chr7_2:79190842-79190861	Msa1079910:CDS	40.0%
!	TTGTGCCTTAGATGCTACTT+CGG	-	chr7_2:79190889-79190908	None:intergenic	40.0%
!	CATCTAAGGCACAAAAGTCA+GGG	+	chr7_2:79190895-79190914	Msa1079910:CDS	40.0%
	CTAACATAGCAAGGGATCAT+TGG	-	chr7_2:79191165-79191184	None:intergenic	40.0%
!	CAATGATCCCTTGCTATGTT+AGG	+	chr7_2:79191163-79191182	Msa1079910:three_prime_UTR	40.0%
	CTGATCCTGGTTACAATGTT+TGG	+	chr7_2:79191246-79191265	Msa1079910:three_prime_UTR	40.0%
	AAATATGTTCCCTACCATGG+AGG	+	chr7_2:79191270-79191289	Msa1079910:three_prime_UTR	40.0%
!!	GACAGAGTTCAGTTCTGAAA+TGG	-	chr7_2:79189935-79189954	None:intergenic	40.0%
	CAAAGATTTACCCAGGAAGA+GGG	+	chr7_2:79189967-79189986	Msa1079910:CDS	40.0%
	TAAATCTGATCCCTCTTCCT+GGG	-	chr7_2:79189980-79189999	None:intergenic	40.0%
	ATAAATCTGATCCCTCTTCC+TGG	-	chr7_2:79189981-79190000	None:intergenic	40.0%
!!	TTGAAGGCTTCAACTTGTTG+TGG	-	chr7_2:79190196-79190215	None:intergenic	40.0%
	TGAAGCCTTCAAAGCTTACA+TGG	+	chr7_2:79190204-79190223	Msa1079910:CDS	40.0%
	TTCAAGTGTAGCACCAACAA+TGG	-	chr7_2:79190549-79190568	None:intergenic	40.0%
	GGAGAGGATAAAGAAAACCA+AGG	+	chr7_2:79190842-79190861	Msa1079910:CDS	40.0%
!	TTGTGCCTTAGATGCTACTT+CGG	-	chr7_2:79190889-79190908	None:intergenic	40.0%
!	CATCTAAGGCACAAAAGTCA+GGG	+	chr7_2:79190895-79190914	Msa1079910:CDS	40.0%
	CTAACATAGCAAGGGATCAT+TGG	-	chr7_2:79191165-79191184	None:intergenic	40.0%
!	CAATGATCCCTTGCTATGTT+AGG	+	chr7_2:79191163-79191182	Msa1079910:three_prime_UTR	40.0%
	CTGATCCTGGTTACAATGTT+TGG	+	chr7_2:79191246-79191265	Msa1079910:three_prime_UTR	40.0%
	AAATATGTTCCCTACCATGG+AGG	+	chr7_2:79191270-79191289	Msa1079910:three_prime_UTR	40.0%
!!	ACTGAACTCTGTCGATTCAG+TGG	+	chr7_2:79189942-79189961	Msa1079910:CDS	45.0%
	GCAAAGATTTACCCAGGAAG+AGG	+	chr7_2:79189966-79189985	Msa1079910:CDS	45.0%
!	GCAGTCCATGTAAGCTTTGA+AGG	-	chr7_2:79190212-79190231	None:intergenic	45.0%
!!	CTTGTGCTGCTTTCTGTACA+TGG	-	chr7_2:79190234-79190253	None:intergenic	45.0%
	GTACAGAAAGCAGCACAAGA+AGG	+	chr7_2:79190235-79190254	Msa1079910:CDS	45.0%
	CTCAAGAAGCTGTGAAGAAG+AGG	+	chr7_2:79190492-79190511	Msa1079910:CDS	45.0%
	ATTTCACTGCGGGATTGACT+CGG	-	chr7_2:79190819-79190838	None:intergenic	45.0%
	TCAATCCCGCAGTGAAATCA+AGG	+	chr7_2:79190821-79190840	Msa1079910:intron	45.0%
	TCCTCTCCTTGATTTCACTG+CGG	-	chr7_2:79190830-79190849	None:intergenic	45.0%
!	CTTGGCTTTCTTCTCATCCT+TGG	-	chr7_2:79190862-79190881	None:intergenic	45.0%
!	AGATGCTACTTCGGCTTTCT+TGG	-	chr7_2:79190880-79190899	None:intergenic	45.0%
	GAAAGCCGAAGTAGCATCTA+AGG	+	chr7_2:79190881-79190900	Msa1079910:CDS	45.0%
!	GCATCTAAGGCACAAAAGTC+AGG	+	chr7_2:79190894-79190913	Msa1079910:CDS	45.0%
	AAGGCACAAAAGTCAGGGAA+AGG	+	chr7_2:79190900-79190919	Msa1079910:CDS	45.0%
	AGGGAAAGGCAATGTTCAGA+AGG	+	chr7_2:79190914-79190933	Msa1079910:CDS	45.0%
	GGGAAAGGCAATGTTCAGAA+GGG	+	chr7_2:79190915-79190934	Msa1079910:CDS	45.0%
	TATGCCCAAGGGTCCTAAAA+TGG	+	chr7_2:79190941-79190960	Msa1079910:CDS	45.0%
	ATGCCCAAGGGTCCTAAAAT+GGG	+	chr7_2:79190942-79190961	Msa1079910:CDS	45.0%
	GCAGTTCAAGCTAGGACTTT+AGG	-	chr7_2:79191214-79191233	None:intergenic	45.0%
	AAGTCCTAGCTTGAACTGCT+TGG	+	chr7_2:79191215-79191234	Msa1079910:three_prime_UTR	45.0%
	GGCAAATATGTTCCCTACCA+TGG	+	chr7_2:79191267-79191286	Msa1079910:three_prime_UTR	45.0%
!!	ACTGAACTCTGTCGATTCAG+TGG	+	chr7_2:79189942-79189961	Msa1079910:CDS	45.0%
	GCAAAGATTTACCCAGGAAG+AGG	+	chr7_2:79189966-79189985	Msa1079910:CDS	45.0%
!	GCAGTCCATGTAAGCTTTGA+AGG	-	chr7_2:79190212-79190231	None:intergenic	45.0%
!!	CTTGTGCTGCTTTCTGTACA+TGG	-	chr7_2:79190234-79190253	None:intergenic	45.0%
	GTACAGAAAGCAGCACAAGA+AGG	+	chr7_2:79190235-79190254	Msa1079910:CDS	45.0%
	CTCAAGAAGCTGTGAAGAAG+AGG	+	chr7_2:79190492-79190511	Msa1079910:CDS	45.0%
	ATTTCACTGCGGGATTGACT+CGG	-	chr7_2:79190819-79190838	None:intergenic	45.0%
	TCAATCCCGCAGTGAAATCA+AGG	+	chr7_2:79190821-79190840	Msa1079910:intron	45.0%
	TCCTCTCCTTGATTTCACTG+CGG	-	chr7_2:79190830-79190849	None:intergenic	45.0%
!	CTTGGCTTTCTTCTCATCCT+TGG	-	chr7_2:79190862-79190881	None:intergenic	45.0%
!	AGATGCTACTTCGGCTTTCT+TGG	-	chr7_2:79190880-79190899	None:intergenic	45.0%
	GAAAGCCGAAGTAGCATCTA+AGG	+	chr7_2:79190881-79190900	Msa1079910:CDS	45.0%
!	GCATCTAAGGCACAAAAGTC+AGG	+	chr7_2:79190894-79190913	Msa1079910:CDS	45.0%
	AAGGCACAAAAGTCAGGGAA+AGG	+	chr7_2:79190900-79190919	Msa1079910:CDS	45.0%
	AGGGAAAGGCAATGTTCAGA+AGG	+	chr7_2:79190914-79190933	Msa1079910:CDS	45.0%
	GGGAAAGGCAATGTTCAGAA+GGG	+	chr7_2:79190915-79190934	Msa1079910:CDS	45.0%
	TATGCCCAAGGGTCCTAAAA+TGG	+	chr7_2:79190941-79190960	Msa1079910:CDS	45.0%
	ATGCCCAAGGGTCCTAAAAT+GGG	+	chr7_2:79190942-79190961	Msa1079910:CDS	45.0%
	GCAGTTCAAGCTAGGACTTT+AGG	-	chr7_2:79191214-79191233	None:intergenic	45.0%
	AAGTCCTAGCTTGAACTGCT+TGG	+	chr7_2:79191215-79191234	Msa1079910:three_prime_UTR	45.0%
	GGCAAATATGTTCCCTACCA+TGG	+	chr7_2:79191267-79191286	Msa1079910:three_prime_UTR	45.0%
!!!	TTTTTTTTTTTTTTTTTTCA+TGG	+	chr7_2:79190673-79190692	Msa1079910:intron	5.0%
!!!	TTTTTTTTTTTTTTTTTTCA+TGG	+	chr7_2:79190673-79190692	Msa1079910:intron	5.0%
	AGTGGCGCAAAGATTTACCC+AGG	+	chr7_2:79189960-79189979	Msa1079910:CDS	50.0%
!	AGTATGGCTTCTTGGTGGCA+CGG	-	chr7_2:79190520-79190539	None:intergenic	50.0%
	CCAACAATGGACCTGGAGTA+TGG	-	chr7_2:79190536-79190555	None:intergenic	50.0%
	CCATACTCCAGGTCCATTGT+TGG	+	chr7_2:79190533-79190552	Msa1079910:CDS	50.0%
	TGTAGCACCAACAATGGACC+TGG	-	chr7_2:79190543-79190562	None:intergenic	50.0%
	CCTCTCCTTGATTTCACTGC+GGG	-	chr7_2:79190829-79190848	None:intergenic	50.0%
	AGTGCCAAGCAGTTCAAGCT+AGG	-	chr7_2:79191222-79191241	None:intergenic	50.0%
!	ATGATTTGCAGCTGCCTCCA+TGG	-	chr7_2:79191287-79191306	None:intergenic	50.0%
	AGTGGCGCAAAGATTTACCC+AGG	+	chr7_2:79189960-79189979	Msa1079910:CDS	50.0%
!	AGTATGGCTTCTTGGTGGCA+CGG	-	chr7_2:79190520-79190539	None:intergenic	50.0%
	CCAACAATGGACCTGGAGTA+TGG	-	chr7_2:79190536-79190555	None:intergenic	50.0%
	CCATACTCCAGGTCCATTGT+TGG	+	chr7_2:79190533-79190552	Msa1079910:CDS	50.0%
	TGTAGCACCAACAATGGACC+TGG	-	chr7_2:79190543-79190562	None:intergenic	50.0%
	CCTCTCCTTGATTTCACTGC+GGG	-	chr7_2:79190829-79190848	None:intergenic	50.0%
	AGTGCCAAGCAGTTCAAGCT+AGG	-	chr7_2:79191222-79191241	None:intergenic	50.0%
!	ATGATTTGCAGCTGCCTCCA+TGG	-	chr7_2:79191287-79191306	None:intergenic	50.0%
	CCTGGAGTATGGCTTCTTGG+TGG	-	chr7_2:79190525-79190544	None:intergenic	55.0%
	CCACCAAGAAGCCATACTCC+AGG	+	chr7_2:79190522-79190541	Msa1079910:CDS	55.0%
	GGACCTGGAGTATGGCTTCT+TGG	-	chr7_2:79190528-79190547	None:intergenic	55.0%
	GAAAAGAACCGAGAAGCCCG+AGG	+	chr7_2:79190580-79190599	Msa1079910:CDS	55.0%
	ATCTCGAACCTCGGGCTTCT+CGG	-	chr7_2:79190591-79190610	None:intergenic	55.0%
	CTAGCAGCATCTCGAACCTC+GGG	-	chr7_2:79190599-79190618	None:intergenic	55.0%
	CCTAGCAGCATCTCGAACCT+CGG	-	chr7_2:79190600-79190619	None:intergenic	55.0%
	CGAGGTTCGAGATGCTGCTA+GGG	+	chr7_2:79190598-79190617	Msa1079910:CDS	55.0%
	CTGCTAGGGAAGCTGCTCTT+CGG	+	chr7_2:79190612-79190631	Msa1079910:CDS	55.0%
	CCCGCAGTGAAATCAAGGAG+AGG	+	chr7_2:79190826-79190845	Msa1079910:intron	55.0%
!!	TCAGAAGGGTGCTATGCCCA+AGG	+	chr7_2:79190929-79190948	Msa1079910:CDS	55.0%
!!	CAGAAGGGTGCTATGCCCAA+GGG	+	chr7_2:79190930-79190949	Msa1079910:CDS	55.0%
!!!	CCGCCCATTTTAGGACCCTT+GGG	-	chr7_2:79190948-79190967	None:intergenic	55.0%
	CCCAAGGGTCCTAAAATGGG+CGG	+	chr7_2:79190945-79190964	Msa1079910:CDS	55.0%
!!!	ACCGCCCATTTTAGGACCCT+TGG	-	chr7_2:79190949-79190968	None:intergenic	55.0%
	AAGGGTCCTAAAATGGGCGG+TGG	+	chr7_2:79190948-79190967	Msa1079910:CDS	55.0%
!	CTAAAATGGGCGGTGGTGGT+GGG	+	chr7_2:79190955-79190974	Msa1079910:CDS	55.0%
	CTTGGCACTTACGCTGATCC+TGG	+	chr7_2:79191233-79191252	Msa1079910:three_prime_UTR	55.0%
	TTGCAGCTGCCTCCATGGTA+GGG	-	chr7_2:79191282-79191301	None:intergenic	55.0%
	TTTGCAGCTGCCTCCATGGT+AGG	-	chr7_2:79191283-79191302	None:intergenic	55.0%
	CCTGGAGTATGGCTTCTTGG+TGG	-	chr7_2:79190525-79190544	None:intergenic	55.0%
	CCACCAAGAAGCCATACTCC+AGG	+	chr7_2:79190522-79190541	Msa1079910:CDS	55.0%
	GGACCTGGAGTATGGCTTCT+TGG	-	chr7_2:79190528-79190547	None:intergenic	55.0%
	GAAAAGAACCGAGAAGCCCG+AGG	+	chr7_2:79190580-79190599	Msa1079910:CDS	55.0%
	ATCTCGAACCTCGGGCTTCT+CGG	-	chr7_2:79190591-79190610	None:intergenic	55.0%
	CTAGCAGCATCTCGAACCTC+GGG	-	chr7_2:79190599-79190618	None:intergenic	55.0%
	CCTAGCAGCATCTCGAACCT+CGG	-	chr7_2:79190600-79190619	None:intergenic	55.0%
	CGAGGTTCGAGATGCTGCTA+GGG	+	chr7_2:79190598-79190617	Msa1079910:CDS	55.0%
	CTGCTAGGGAAGCTGCTCTT+CGG	+	chr7_2:79190612-79190631	Msa1079910:CDS	55.0%
	CCCGCAGTGAAATCAAGGAG+AGG	+	chr7_2:79190826-79190845	Msa1079910:intron	55.0%
!!	TCAGAAGGGTGCTATGCCCA+AGG	+	chr7_2:79190929-79190948	Msa1079910:CDS	55.0%
!!	CAGAAGGGTGCTATGCCCAA+GGG	+	chr7_2:79190930-79190949	Msa1079910:CDS	55.0%
!!!	CCGCCCATTTTAGGACCCTT+GGG	-	chr7_2:79190948-79190967	None:intergenic	55.0%
	CCCAAGGGTCCTAAAATGGG+CGG	+	chr7_2:79190945-79190964	Msa1079910:CDS	55.0%
!!!	ACCGCCCATTTTAGGACCCT+TGG	-	chr7_2:79190949-79190968	None:intergenic	55.0%
	AAGGGTCCTAAAATGGGCGG+TGG	+	chr7_2:79190948-79190967	Msa1079910:CDS	55.0%
!	CTAAAATGGGCGGTGGTGGT+GGG	+	chr7_2:79190955-79190974	Msa1079910:CDS	55.0%
	CTTGGCACTTACGCTGATCC+TGG	+	chr7_2:79191233-79191252	Msa1079910:three_prime_UTR	55.0%
	TTGCAGCTGCCTCCATGGTA+GGG	-	chr7_2:79191282-79191301	None:intergenic	55.0%
	TTTGCAGCTGCCTCCATGGT+AGG	-	chr7_2:79191283-79191302	None:intergenic	55.0%
	CCGAGGTTCGAGATGCTGCT+AGG	+	chr7_2:79190597-79190616	Msa1079910:CDS	60.0%
	GGTCCTAAAATGGGCGGTGG+TGG	+	chr7_2:79190951-79190970	Msa1079910:CDS	60.0%
!	CCACCACCACCGCCCATTTT+AGG	-	chr7_2:79190957-79190976	None:intergenic	60.0%
!	CCTAAAATGGGCGGTGGTGG+TGG	+	chr7_2:79190954-79190973	Msa1079910:CDS	60.0%
	CCGAGGTTCGAGATGCTGCT+AGG	+	chr7_2:79190597-79190616	Msa1079910:CDS	60.0%
	GGTCCTAAAATGGGCGGTGG+TGG	+	chr7_2:79190951-79190970	Msa1079910:CDS	60.0%
!	CCACCACCACCGCCCATTTT+AGG	-	chr7_2:79190957-79190976	None:intergenic	60.0%
!	CCTAAAATGGGCGGTGGTGG+TGG	+	chr7_2:79190954-79190973	Msa1079910:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	79189927	79191378	79189927	ID=Msa1079910;Name=Msa1079910
chr7_2	mRNA	79189927	79191378	79189927	ID=Msa1079910-mRNA-1;Parent=Msa1079910;Name=Msa1079910-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0\|1\|0.75\|1\|1\|1\|4\|392\|164
chr7_2	exon	79189927	79190016	79189927	ID=Msa1079910-mRNA-1:exon:19901;Parent=Msa1079910-mRNA-1
chr7_2	exon	79190155	79190256	79190155	ID=Msa1079910-mRNA-1:exon:19902;Parent=Msa1079910-mRNA-1
chr7_2	exon	79190485	79190633	79190485	ID=Msa1079910-mRNA-1:exon:19903;Parent=Msa1079910-mRNA-1
chr7_2	exon	79190833	79191378	79190833	ID=Msa1079910-mRNA-1:exon:19904;Parent=Msa1079910-mRNA-1
chr7_2	CDS	79189927	79190016	79189927	ID=Msa1079910-mRNA-1:cds;Parent=Msa1079910-mRNA-1
chr7_2	CDS	79190155	79190256	79190155	ID=Msa1079910-mRNA-1:cds;Parent=Msa1079910-mRNA-1
chr7_2	CDS	79190485	79190633	79190485	ID=Msa1079910-mRNA-1:cds;Parent=Msa1079910-mRNA-1
chr7_2	CDS	79190833	79190986	79190833	ID=Msa1079910-mRNA-1:cds;Parent=Msa1079910-mRNA-1
chr7_2	three_prime_UTR	79190987	79191378	79190987	ID=Msa1079910-mRNA-1:three_prime_utr;Parent=Msa1079910-mRNA-1

Gene Sequence

>Msa1079910

TGTTTCCATTTCAGAACTGAACTCTGTCGATTCAGTGGCGCAAAGATTTACCCAGGAAGAGGGATCAGATTTATTCGTAGTGATTCTCAGGTTTTCCTCTTTGTGAACTCAAAATGTAAGAGGTATTTCCACAACAAGTTGAAGCCTTCAAAGCTTACATGGACTGCCATGTACAGAAAGCAGCACAAGAAGGACATTGCTCAAGAAGCTGTGAAGAAGAGGCGCCGTGCCACCAAGAAGCCATACTCCAGGTCCATTGTTGGTGCTACACTTGAAGTCATTCAGAAGAAAAGAACCGAGAAGCCCGAGGTTCGAGATGCTGCTAGGGAAGCTGCTCTTCGTGAAATCAAGGAGAGGATAAAGAAAACCAAGGATGAGAAGAAAGCCAAGAAAGCCGAAGTAGCATCTAAGGCACAAAAGTCAGGGAAAGGCAATGTTCAGAAGGGTGCTATGCCCAAGGGTCCTAAAATGGGCGGTGGTGGTGGGAAGCGTTAA

Protein sequence

>Msa1079910

CFHFRTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVASKAQKSGKGNVQKGAMPKGPKMGGGGGKR*