Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0187810 | XP_013453041.1 | 97.906 | 191 | 4 | 0 | 1 | 191 | 1 | 191 | 1.88e-133 | 381 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0187810 | sp|Q9ZNS1|RS7_AVIMR | 81.579 | 190 | 35 | 0 | 1 | 190 | 1 | 190 | 5.39e-114 | 325 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0187810 | B7FGT0 | 97.906 | 191 | 4 | 0 | 1 | 191 | 1 | 191 | 8.96e-134 | 381 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0027590 | Msa0187810 | 0.803491 | 3.399378e-49 | -8.615850e-47 |
Msa0072570 | Msa0187810 | 0.829742 | 4.342879e-55 | -8.615850e-47 |
Msa0087910 | Msa0187810 | 0.829768 | 4.278966e-55 | -8.615850e-47 |
Msa0114600 | Msa0187810 | 0.850399 | 1.741188e-60 | -8.615850e-47 |
Msa0132460 | Msa0187810 | 0.801129 | 1.041447e-48 | -8.615850e-47 |
Msa0134580 | Msa0187810 | 0.819233 | 1.293509e-52 | -8.615850e-47 |
Msa0167860 | Msa0187810 | 0.860067 | 2.674531e-63 | -8.615850e-47 |
Msa0183840 | Msa0187810 | 0.809539 | 1.800349e-50 | -8.615850e-47 |
Msa0186740 | Msa0187810 | 0.802856 | 4.599898e-49 | -8.615850e-47 |
Msa0187810 | Msa0191550 | 0.801187 | 1.013413e-48 | -8.615850e-47 |
Msa0187810 | Msa0192750 | 0.807064 | 6.067007e-50 | -8.615850e-47 |
Msa0187810 | Msa0194940 | 0.829578 | 4.760064e-55 | -8.615850e-47 |
Msa0187810 | Msa0235050 | 0.841846 | 3.708545e-58 | -8.615850e-47 |
Msa0187810 | Msa0277600 | 0.821685 | 3.540707e-53 | -8.615850e-47 |
Msa0187810 | Msa0281330 | 0.889724 | 1.873583e-73 | -8.615850e-47 |
Msa0187810 | Msa0281370 | 0.861849 | 7.683253e-64 | -8.615850e-47 |
Msa0187810 | Msa0315430 | 0.842492 | 2.501466e-58 | -8.615850e-47 |
Msa0187810 | Msa0369410 | 0.816464 | 5.455310e-52 | -8.615850e-47 |
Msa0187810 | Msa0377520 | 0.807492 | 4.923001e-50 | -8.615850e-47 |
Msa0187810 | Msa0426090 | 0.812972 | 3.239483e-51 | -8.615850e-47 |
Msa0187810 | Msa0426250 | 0.831832 | 1.334593e-55 | -8.615850e-47 |
Msa0187810 | Msa0472480 | 0.802666 | 5.035092e-49 | -8.615850e-47 |
Msa0187810 | Msa0547920 | 0.847720 | 9.671022e-60 | -8.615850e-47 |
Msa0187810 | Msa0550420 | 0.807389 | 5.177692e-50 | -8.615850e-47 |
Msa0187810 | Msa0550490 | 0.820147 | 7.997596e-53 | -8.615850e-47 |
Msa0187810 | Msa0573550 | 0.826653 | 2.410210e-54 | -8.615850e-47 |
Msa0187810 | Msa0602900 | 0.833278 | 5.845540e-56 | -8.615850e-47 |
Msa0187810 | Msa0605890 | 0.865955 | 4.056559e-65 | -8.615850e-47 |
Msa0187810 | Msa0643960 | 0.840024 | 1.115457e-57 | -8.615850e-47 |
Msa0187810 | Msa0694400 | 0.803206 | 3.893653e-49 | -8.615850e-47 |
Msa0187810 | Msa0704860 | 0.807224 | 5.611841e-50 | -8.615850e-47 |
Msa0187810 | Msa0741510 | 0.810322 | 1.221048e-50 | -8.615850e-47 |
Msa0187810 | Msa0902220 | 0.989448 | 3.637403e-178 | -8.615850e-47 |
Msa0187810 | Msa0927910 | 0.992547 | 6.012311e-194 | -8.615850e-47 |
Msa0187810 | Msa0929700 | 0.844854 | 5.841718e-59 | -8.615850e-47 |
Msa0187810 | Msa0930890 | 0.800108 | 1.682391e-48 | -8.615850e-47 |
Msa0187810 | Msa0978470 | 0.800183 | 1.623897e-48 | -8.615850e-47 |
Msa0187810 | Msa1040160 | 0.807435 | 5.061198e-50 | -8.615850e-47 |
Msa0187810 | Msa1079910 | 0.814633 | 1.394825e-51 | -8.615850e-47 |
Msa0187810 | Msa1124850 | 0.840122 | 1.051541e-57 | -8.615850e-47 |
Msa0187810 | Msa1147670 | 0.826213 | 3.069663e-54 | -8.615850e-47 |
Msa0187810 | Msa1186030 | 0.818137 | 2.293222e-52 | -8.615850e-47 |
Msa0187810 | Msa1341780 | 0.815042 | 1.131835e-51 | -8.615850e-47 |
Msa0187810 | Msa1351910 | 0.820998 | 5.098718e-53 | -8.615850e-47 |
Msa0187810 | Msa1367540 | 0.821466 | 3.978564e-53 | -8.615850e-47 |
Msa0187810 | Msa1385480 | 0.800001 | 1.768836e-48 | -8.615850e-47 |
Msa0187810 | Msa1390760 | 0.801365 | 9.320466e-49 | -8.615850e-47 |
Msa0187810 | Msa1397660 | 0.828546 | 8.464494e-55 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0187810 | MtrunA17_Chr6g0484891 | 97.906 | 191 | 4 | 0 | 1 | 191 | 1 | 191 | 1.73e-137 | 381 |
Msa0187810 | MtrunA17_Chr6g0458031 | 97.382 | 191 | 5 | 0 | 1 | 191 | 1 | 191 | 3.80e-137 | 380 |
Msa0187810 | MtrunA17_Chr8g0379651 | 63.636 | 44 | 8 | 1 | 145 | 188 | 51 | 86 | 6.20e-12 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0187810 | AT1G48830.1 | 79.058 | 191 | 40 | 0 | 1 | 191 | 1 | 191 | 1.54e-114 | 324 |
Msa0187810 | AT1G48830.2 | 79.058 | 191 | 40 | 0 | 1 | 191 | 1 | 191 | 1.54e-114 | 324 |
Msa0187810 | AT3G02560.1 | 79.581 | 191 | 39 | 0 | 1 | 191 | 1 | 191 | 5.73e-113 | 320 |
Msa0187810 | AT3G02560.3 | 79.581 | 191 | 39 | 0 | 1 | 191 | 1 | 191 | 5.73e-113 | 320 |
Msa0187810 | AT3G02560.2 | 79.581 | 191 | 39 | 0 | 1 | 191 | 1 | 191 | 5.73e-113 | 320 |
Msa0187810 | AT5G16130.1 | 80.319 | 188 | 37 | 0 | 1 | 188 | 1 | 188 | 2.00e-112 | 318 |
Find 73 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACAGCCAAGTTGATGTTTC+TGG | 0.145762 | 2_1:+2574613 | Msa0187810:intron |
ATATGATGAATGTTTATTTA+TGG | 0.222500 | 2_1:+2575792 | Msa0187810:three_prime_UTR |
GTTGAAGCTCTCTATGATTC+TGG | 0.238608 | 2_1:+2575824 | Msa0187810:three_prime_UTR |
TATGATACATTATTTATTAT+AGG | 0.254565 | 2_1:+2575868 | Msa0187810:three_prime_UTR |
TCCTCAATCTGTAGGGGATA+TGG | 0.261869 | 2_1:-2574657 | None:intergenic |
AGAATCTACGCCTCAGTAAC+AGG | 0.280462 | 2_1:-2575733 | None:intergenic |
TTTGTTAACCTATATAGTTT+TGG | 0.282836 | 2_1:-2572182 | None:intergenic |
TGAGCAGCGGAGCCTTTCTT+TGG | 0.288203 | 2_1:-2575285 | None:intergenic |
ATAGTTTACCTTCATGATCT+TGG | 0.292174 | 2_1:-2575415 | None:intergenic |
TTATTATGAAAAGTCTTTCT+TGG | 0.331298 | 2_1:-2575951 | None:intergenic |
CAACACATATATTTACAAAA+TGG | 0.341102 | 2_1:-2572145 | None:intergenic |
TAAACCAAGAGTGTTTCATT+AGG | 0.349218 | 2_1:+2572211 | Msa0187810:five_prime_UTR |
AAATTCACGTCAAGCTCGTT+AGG | 0.363074 | 2_1:+2574692 | Msa0187810:CDS |
CGTACTAGATACAGAATTGA+TGG | 0.367485 | 2_1:+2575390 | Msa0187810:CDS |
TATAATAAATAATGTATCAT+AGG | 0.369192 | 2_1:-2575866 | None:intergenic |
TATTATGAAAAGTCTTTCTT+GGG | 0.377421 | 2_1:-2575950 | None:intergenic |
AAACCAAGAGTGTTTCATTA+GGG | 0.381952 | 2_1:+2572212 | Msa0187810:five_prime_UTR |
GTTGCAGGCTTTGTTTGATC+TGG | 0.412438 | 2_1:+2574452 | Msa0187810:intron |
CGCTGAGCCTACTGAATTTG+AGG | 0.426295 | 2_1:+2574319 | Msa0187810:CDS |
ACACAAGCCCAAAACTATAT+AGG | 0.431675 | 2_1:+2572174 | Msa0187810:five_prime_UTR |
GCAGCGGAGCCTTTCTTTGG+TGG | 0.435938 | 2_1:-2575282 | None:intergenic |
TTGTGAATATGTTTACTTCA+AGG | 0.441187 | 2_1:+2574273 | Msa0187810:exon |
ATCTGCATCTTCTTCGGCTA+AGG | 0.454250 | 2_1:+2572269 | Msa0187810:five_prime_UTR |
GCAGTTTACAGGAAACTCTC+AGG | 0.456482 | 2_1:+2575688 | Msa0187810:CDS |
AACTATATAGGTTAACAAAC+GGG | 0.460024 | 2_1:+2572186 | Msa0187810:five_prime_UTR |
AGCCGCATCTGCATCTTCTT+CGG | 0.466019 | 2_1:+2572263 | Msa0187810:five_prime_UTR |
ATTTGAGGAGTCAGTTGGAC+AGG | 0.472058 | 2_1:+2574334 | Msa0187810:CDS |
TGTTACCTGCTGAGATTGTT+GGG | 0.479284 | 2_1:+2575364 | Msa0187810:CDS |
AAACTATATAGGTTAACAAA+CGG | 0.480311 | 2_1:+2572185 | Msa0187810:five_prime_UTR |
TGGTGGCCTGACGATTCTCC+TGG | 0.483590 | 2_1:-2575265 | None:intergenic |
GTGTTACCTGCTGAGATTGT+TGG | 0.484291 | 2_1:+2575363 | Msa0187810:CDS |
AAACCCTAATGAAACACTCT+TGG | 0.492918 | 2_1:-2572215 | None:intergenic |
TCCCCTACAGATTGAGGAAG+GGG | 0.499187 | 2_1:+2574662 | Msa0187810:CDS |
CGTGGACAGCAGTGAGTGTA+CGG | 0.505350 | 2_1:-2575320 | None:intergenic |
ATCGTCAGGCCACCAAAGAA+AGG | 0.508890 | 2_1:+2575273 | Msa0187810:CDS |
TTCTGGAAACCGCAAGGCTG+TGG | 0.509249 | 2_1:+2574630 | Msa0187810:CDS |
TCCATATCCCCTACAGATTG+AGG | 0.509912 | 2_1:+2574656 | Msa0187810:CDS |
TTGCCACCAGGAGAATCGTC+AGG | 0.510117 | 2_1:+2575259 | Msa0187810:CDS |
GAAGAAAATCAGCAAGGACA+AGG | 0.510615 | 2_1:+2574295 | Msa0187810:CDS |
GAACCCCTTCCTCAATCTGT+AGG | 0.515858 | 2_1:-2574665 | None:intergenic |
AACCCCTTCCTCAATCTGTA+GGG | 0.520673 | 2_1:-2574664 | None:intergenic |
ACTGAATTTGAGGAGTCAGT+TGG | 0.548538 | 2_1:+2574329 | Msa0187810:CDS |
GCGCGCGAGAAGTGTGAAGG+TGG | 0.549394 | 2_1:+2572086 | None:intergenic |
AATTCACGTCAAGCTCGTTA+GGG | 0.550766 | 2_1:+2574693 | Msa0187810:CDS |
GCTGCGTGGACGCTGAGCAG+CGG | 0.558388 | 2_1:-2575298 | None:intergenic |
CGTTTCCCAACAATCTCAGC+AGG | 0.558735 | 2_1:-2575369 | None:intergenic |
GTTTGAGTACCCTGTTACTG+AGG | 0.572498 | 2_1:+2575723 | Msa0187810:CDS |
TATCCCCTACAGATTGAGGA+AGG | 0.573232 | 2_1:+2574660 | Msa0187810:CDS |
GGTTTCCAGAAACATCAACT+TGG | 0.575562 | 2_1:-2574618 | None:intergenic |
TAAATGATATATTAAAATGA+CGG | 0.578845 | 2_1:+2576004 | Msa0187810:three_prime_UTR |
ATGTAATCCTCATTGCCACC+AGG | 0.584954 | 2_1:+2575247 | Msa0187810:CDS |
CGATTCTCCTGGTGGCAATG+AGG | 0.590532 | 2_1:-2575254 | None:intergenic |
CGCGCGAGAAGTGTGAAGGT+GGG | 0.590711 | 2_1:+2572087 | None:intergenic |
AAGAAAATCAGCAAGGACAA+GGG | 0.599976 | 2_1:+2574296 | Msa0187810:CDS |
CAGTTTACAGGAAACTCTCA+GGG | 0.612531 | 2_1:+2575689 | Msa0187810:CDS |
TGAGAAGAAATTCAGCGGAA+AGG | 0.621961 | 2_1:+2574720 | Msa0187810:CDS |
TGATGTTTCTGGAAACCGCA+AGG | 0.622049 | 2_1:+2574624 | Msa0187810:CDS |
ATCCCCTACAGATTGAGGAA+GGG | 0.622569 | 2_1:+2574661 | Msa0187810:CDS |
ACTGACTCCTCAAATTCAGT+AGG | 0.622702 | 2_1:-2574326 | None:intergenic |
AGCCGAAGAAGATGCAGATG+CGG | 0.627417 | 2_1:-2572265 | None:intergenic |
AGGGCGCGCGAGAAGTGTGA+AGG | 0.630598 | 2_1:+2572083 | None:intergenic |
ACCCCTTCCTCAATCTGTAG+GGG | 0.633929 | 2_1:-2574663 | None:intergenic |
TGATGGATCCAAGATCATGA+AGG | 0.639271 | 2_1:+2575407 | Msa0187810:CDS |
TGTCCACGAGGCAATGCTCG+AGG | 0.642990 | 2_1:+2575335 | Msa0187810:CDS |
TTCAAGGAAGAAAATCAGCA+AGG | 0.648771 | 2_1:+2574289 | Msa0187810:CDS |
GCAGTGAGTGTACGGCTGCG+TGG | 0.657285 | 2_1:-2575312 | None:intergenic |
TACACTCACTGCTGTCCACG+AGG | 0.659160 | 2_1:+2575323 | Msa0187810:CDS |
TGGCCTGACGATTCTCCTGG+TGG | 0.662830 | 2_1:-2575262 | None:intergenic |
ATGTGATATAACTTGTGTTG+CGG | 0.669488 | 2_1:+2575980 | Msa0187810:three_prime_UTR |
TATGGATAACCACAGCCTTG+CGG | 0.675676 | 2_1:-2574639 | None:intergenic |
GAATCTACGCCTCAGTAACA+GGG | 0.678065 | 2_1:-2575732 | None:intergenic |
CATCCTCGAGCATTGCCTCG+TGG | 0.690997 | 2_1:-2575338 | None:intergenic |
GAGCTTGAGAAGAAATTCAG+CGG | 0.694607 | 2_1:+2574715 | Msa0187810:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTCATTTGAAATTTAAAAA+TGG | + | chr2_1:2572461-2572480 | Msa0187810:intron | 10.0% |
!!! | TTCATTTGAAATTTAAAAAT+GGG | + | chr2_1:2572462-2572481 | Msa0187810:intron | 10.0% |
!!! | GTAATTTTTATAAACTAAAT+TGG | - | chr2_1:2572750-2572769 | None:intergenic | 10.0% |
!! | TATAATAAATAATGTATCAT+AGG | - | chr2_1:2575869-2575888 | None:intergenic | 10.0% |
!! | TATGATACATTATTTATTAT+AGG | + | chr2_1:2575868-2575887 | Msa0187810:three_prime_UTR | 10.0% |
!! | TAAATGATATATTAAAATGA+CGG | + | chr2_1:2576004-2576023 | Msa0187810:three_prime_UTR | 10.0% |
!! | ATTGTTATAGAAATAGATAA+AGG | + | chr2_1:2572645-2572664 | Msa0187810:intron | 15.0% |
!!! | AAAAATCGTTTTTTATTGAT+TGG | + | chr2_1:2573656-2573675 | Msa0187810:intron | 15.0% |
!! | ATATGATGAATGTTTATTTA+TGG | + | chr2_1:2575792-2575811 | Msa0187810:three_prime_UTR | 15.0% |
!! | CAACACATATATTTACAAAA+TGG | - | chr2_1:2572148-2572167 | None:intergenic | 20.0% |
!!! | CATTTTGTAAATATATGTGT+TGG | + | chr2_1:2572146-2572165 | Msa0187810:five_prime_UTR | 20.0% |
!!! | TTGTTAACCTATATAGTTTT+GGG | - | chr2_1:2572184-2572203 | None:intergenic | 20.0% |
!!! | TTTGTTAACCTATATAGTTT+TGG | - | chr2_1:2572185-2572204 | None:intergenic | 20.0% |
!! | AAACTATATAGGTTAACAAA+CGG | + | chr2_1:2572185-2572204 | Msa0187810:five_prime_UTR | 20.0% |
!! | AACTTTGAATTCAATTAACA+TGG | - | chr2_1:2572351-2572370 | None:intergenic | 20.0% |
!! | ATGAAAACAGTTTATGATAA+AGG | + | chr2_1:2572715-2572734 | Msa0187810:intron | 20.0% |
!! | TGAAAACAGTTTATGATAAA+GGG | + | chr2_1:2572716-2572735 | Msa0187810:intron | 20.0% |
!!! | AAACGATTTAACTTAACTTT+GGG | - | chr2_1:2572875-2572894 | None:intergenic | 20.0% |
!!! | AAAACGATTTAACTTAACTT+TGG | - | chr2_1:2572876-2572895 | None:intergenic | 20.0% |
!!! | GTAGTTTTTATAAGCTATAT+TGG | + | chr2_1:2572910-2572929 | Msa0187810:intron | 20.0% |
!!! | ATTTTATCAGTGAATATGAT+TGG | + | chr2_1:2573205-2573224 | Msa0187810:intron | 20.0% |
!!! | TTTTCTTTTTGTTTTTTCCT+CGG | + | chr2_1:2573368-2573387 | Msa0187810:intron | 20.0% |
!!! | TATGCTTTTTTTTGTCTAAT+GGG | + | chr2_1:2573436-2573455 | Msa0187810:intron | 20.0% |
!! | TTTGAATCATTTGAGAAAAT+TGG | + | chr2_1:2573688-2573707 | Msa0187810:intron | 20.0% |
!! | TTGAATCATTTGAGAAAATT+GGG | + | chr2_1:2573689-2573708 | Msa0187810:intron | 20.0% |
!! | GAAACATTAACAAGAAAAAT+GGG | - | chr2_1:2573819-2573838 | None:intergenic | 20.0% |
!! | AGAAACATTAACAAGAAAAA+TGG | - | chr2_1:2573820-2573839 | None:intergenic | 20.0% |
!!! | TTTTTCAATATTTTGTTTCG+TGG | + | chr2_1:2573883-2573902 | Msa0187810:intron | 20.0% |
!!! | AGGTTATATATTGATTACTA+CGG | + | chr2_1:2574354-2574373 | Msa0187810:intron | 20.0% |
!! | AAATTGGAACAAAAAATTGT+CGG | - | chr2_1:2574817-2574836 | None:intergenic | 20.0% |
!! | AGAATAAAGTTCTTGAAATA+AGG | - | chr2_1:2574866-2574885 | None:intergenic | 20.0% |
!! | TTAAAGCAATTTAAAAACCA+AGG | - | chr2_1:2574901-2574920 | None:intergenic | 20.0% |
!! | CAAATTATTTAGTGTATGTT+TGG | - | chr2_1:2575131-2575150 | None:intergenic | 20.0% |
!! | TATTATGAAAAGTCTTTCTT+GGG | - | chr2_1:2575953-2575972 | None:intergenic | 20.0% |
!! | TTATTATGAAAAGTCTTTCT+TGG | - | chr2_1:2575954-2575973 | None:intergenic | 20.0% |
!!! | TGTTTTCCAACTTTTTTCTT+GGG | - | chr2_1:2572123-2572142 | None:intergenic | 25.0% |
!!! | ATGTTTTCCAACTTTTTTCT+TGG | - | chr2_1:2572124-2572143 | None:intergenic | 25.0% |
! | AACTATATAGGTTAACAAAC+GGG | + | chr2_1:2572186-2572205 | Msa0187810:five_prime_UTR | 25.0% |
! | TAGAGCAATAAATCGTAAAA+GGG | - | chr2_1:2572308-2572327 | None:intergenic | 25.0% |
! | ATAGAGCAATAAATCGTAAA+AGG | - | chr2_1:2572309-2572328 | None:intergenic | 25.0% |
!!! | TCTTTCTAAACCCTATTTTT+TGG | + | chr2_1:2572384-2572403 | Msa0187810:intron | 25.0% |
! | GATTGATATGGTTAATTACT+TGG | + | chr2_1:2572525-2572544 | Msa0187810:intron | 25.0% |
! | TAAATTAAGCTGCAAATAAG+TGG | - | chr2_1:2572605-2572624 | None:intergenic | 25.0% |
! | TAAATTGCTGTGTAACTATA+AGG | + | chr2_1:2573096-2573115 | Msa0187810:intron | 25.0% |
!! | ATACTTGACATTTTTATGCT+TGG | + | chr2_1:2573164-2573183 | Msa0187810:intron | 25.0% |
!!! | CTATGCTTTTTTTTGTCTAA+TGG | + | chr2_1:2573435-2573454 | Msa0187810:intron | 25.0% |
! | GAAATTTGTGATGTAATAGT+AGG | + | chr2_1:2573479-2573498 | Msa0187810:intron | 25.0% |
! | ACATATTACTATTGCTTCAA+GGG | - | chr2_1:2573555-2573574 | None:intergenic | 25.0% |
! | AAAACCAAAATAAAGGATTG+TGG | - | chr2_1:2573598-2573617 | None:intergenic | 25.0% |
!!! | ACAATCCTTTATTTTGGTTT+TGG | + | chr2_1:2573597-2573616 | Msa0187810:intron | 25.0% |
!!! | CAATCCTTTATTTTGGTTTT+GGG | + | chr2_1:2573598-2573617 | Msa0187810:intron | 25.0% |
!! | CAGATTTTATGAACATCTAA+GGG | + | chr2_1:2573772-2573791 | Msa0187810:intron | 25.0% |
!! | AGATTTTATGAACATCTAAG+GGG | + | chr2_1:2573773-2573792 | Msa0187810:intron | 25.0% |
!!! | GTTTCTGTTGTTTTTATGTT+TGG | + | chr2_1:2573834-2573853 | Msa0187810:intron | 25.0% |
! | TGCAATAATGATGTTGTATT+TGG | + | chr2_1:2574000-2574019 | Msa0187810:intron | 25.0% |
! | TTGTGAATATGTTTACTTCA+AGG | + | chr2_1:2574273-2574292 | Msa0187810:exon | 25.0% |
! | TATTTAGTGTATGTTTGGTT+TGG | - | chr2_1:2575126-2575145 | None:intergenic | 25.0% |
!! | TGTGAGAAAACAATTTTTCA+AGG | - | chr2_1:2575172-2575191 | None:intergenic | 25.0% |
!!! | AGTAACTTTTGGAAATTGTT+TGG | - | chr2_1:2575449-2575468 | None:intergenic | 25.0% |
!!! | TGCTTATTTTCACATTAGTT+TGG | - | chr2_1:2575505-2575524 | None:intergenic | 25.0% |
!!! | GATTCTATTTTTCTCAGTTT+TGG | + | chr2_1:2575750-2575769 | Msa0187810:exon | 25.0% |
GAAATTCCCAAGAAAAAAGT+TGG | + | chr2_1:2572114-2572133 | Msa0187810:five_prime_UTR | 30.0% | |
!! | TAAACCAAGAGTGTTTCATT+AGG | + | chr2_1:2572211-2572230 | Msa0187810:five_prime_UTR | 30.0% |
!! | AAACCAAGAGTGTTTCATTA+GGG | + | chr2_1:2572212-2572231 | Msa0187810:five_prime_UTR | 30.0% |
CATCGTTGTACCAAAAAATA+GGG | - | chr2_1:2572397-2572416 | None:intergenic | 30.0% | |
TCATCGTTGTACCAAAAAAT+AGG | - | chr2_1:2572398-2572417 | None:intergenic | 30.0% | |
!!! | TTTTGTTGCACTGATTGATA+TGG | + | chr2_1:2572513-2572532 | Msa0187810:intron | 30.0% |
TGTAACCTAACATGAATCTT+AGG | + | chr2_1:2572559-2572578 | Msa0187810:intron | 30.0% | |
GTAACCTAACATGAATCTTA+GGG | + | chr2_1:2572560-2572579 | Msa0187810:intron | 30.0% | |
!!! | GATAAAGGCTCTGTTTTTAT+TGG | + | chr2_1:2572660-2572679 | Msa0187810:intron | 30.0% |
TTATACACAAGTGCTTATCA+TGG | + | chr2_1:2572806-2572825 | Msa0187810:intron | 30.0% | |
AATTTAGACTAAGGGCTATT+TGG | - | chr2_1:2573082-2573101 | None:intergenic | 30.0% | |
TACACAGCAATTTAGACTAA+GGG | - | chr2_1:2573090-2573109 | None:intergenic | 30.0% | |
TTACACAGCAATTTAGACTA+AGG | - | chr2_1:2573091-2573110 | None:intergenic | 30.0% | |
TGATAAAATACCACGATTAG+AGG | - | chr2_1:2573194-2573213 | None:intergenic | 30.0% | |
! | ATCCTGACATGTTGAATTTT+AGG | + | chr2_1:2573304-2573323 | Msa0187810:intron | 30.0% |
CACATATTACTATTGCTTCA+AGG | - | chr2_1:2573556-2573575 | None:intergenic | 30.0% | |
!! | ACTTCCACAATCCTTTATTT+TGG | + | chr2_1:2573591-2573610 | Msa0187810:intron | 30.0% |
TTCTCCCAAAACCAAAATAA+AGG | - | chr2_1:2573605-2573624 | None:intergenic | 30.0% | |
! | GCAGATTTTATGAACATCTA+AGG | + | chr2_1:2573771-2573790 | Msa0187810:intron | 30.0% |
!!! | TGTTTTCAATTTGTTGTTGC+AGG | + | chr2_1:2574437-2574456 | Msa0187810:intron | 30.0% |
TTAGAAAGAATAACTGGCAA+AGG | - | chr2_1:2574764-2574783 | None:intergenic | 30.0% | |
GACAGAATCGTAATAAAAGA+TGG | - | chr2_1:2574792-2574811 | None:intergenic | 30.0% | |
CTGTAAAACTGAAGTTAATC+AGG | + | chr2_1:2574952-2574971 | Msa0187810:intron | 30.0% | |
AACAAAAACTCACGATTACA+TGG | + | chr2_1:2575024-2575043 | Msa0187810:intron | 30.0% | |
CTAATGAACCTTAAACTTGT+AGG | + | chr2_1:2575224-2575243 | Msa0187810:intron | 30.0% | |
GATTACATCCTACAAGTTTA+AGG | - | chr2_1:2575235-2575254 | None:intergenic | 30.0% | |
ATAGTTTACCTTCATGATCT+TGG | - | chr2_1:2575418-2575437 | None:intergenic | 30.0% | |
!!! | TTCAAGCTTTGAGTAACTTT+TGG | - | chr2_1:2575460-2575479 | None:intergenic | 30.0% |
! | TCTTGTGTTTCTGTGTATAT+AGG | + | chr2_1:2575609-2575628 | Msa0187810:intron | 30.0% |
! | TCTGTGTATATAGGTGTTTT+TGG | + | chr2_1:2575618-2575637 | Msa0187810:intron | 30.0% |
!! | CAGTATTGTTTTTCTCCTTT+GGG | - | chr2_1:2575645-2575664 | None:intergenic | 30.0% |
!! | TCAGTATTGTTTTTCTCCTT+TGG | - | chr2_1:2575646-2575665 | None:intergenic | 30.0% |
CACATAGCAAAAAAGTCATT+TGG | - | chr2_1:2575896-2575915 | None:intergenic | 30.0% | |
!!! | CAAATGACTTTTTTGCTATG+TGG | + | chr2_1:2575894-2575913 | Msa0187810:three_prime_UTR | 30.0% |
! | ATGTGATATAACTTGTGTTG+CGG | + | chr2_1:2575980-2575999 | Msa0187810:three_prime_UTR | 30.0% |
!!! | ATAGTTTTGGGCTTGTGTTT+GGG | - | chr2_1:2572172-2572191 | None:intergenic | 35.0% |
!!! | TATAGTTTTGGGCTTGTGTT+TGG | - | chr2_1:2572173-2572192 | None:intergenic | 35.0% |
ACACAAGCCCAAAACTATAT+AGG | + | chr2_1:2572174-2572193 | Msa0187810:five_prime_UTR | 35.0% | |
AAACCCTAATGAAACACTCT+TGG | - | chr2_1:2572218-2572237 | None:intergenic | 35.0% | |
TAGGATTTGTGAGACAGTTT+AGG | + | chr2_1:2572685-2572704 | Msa0187810:intron | 35.0% | |
AACTTAACTTTGGGTCTGTT+TGG | - | chr2_1:2572866-2572885 | None:intergenic | 35.0% | |
AGCATAAACATCAACACACA+AGG | - | chr2_1:2573271-2573290 | None:intergenic | 35.0% | |
AGCCTAAAATTCAACATGTC+AGG | - | chr2_1:2573309-2573328 | None:intergenic | 35.0% | |
CTTAAACAATGCTTTAACCG+AGG | - | chr2_1:2573388-2573407 | None:intergenic | 35.0% | |
GCATTGTTTAAGTAGAAGCT+TGG | + | chr2_1:2573396-2573415 | Msa0187810:intron | 35.0% | |
TAATAGTAGGCTTCACTATC+TGG | + | chr2_1:2573492-2573511 | Msa0187810:intron | 35.0% | |
AACAGACCTGTAATGATTTG+CGG | + | chr2_1:2573740-2573759 | Msa0187810:intron | 35.0% | |
CAACATCATTATTGCAGTAG+TGG | - | chr2_1:2573996-2574015 | None:intergenic | 35.0% | |
ATGATGTTGTATTTGGACGT+CGG | + | chr2_1:2574007-2574026 | Msa0187810:intron | 35.0% | |
!!! | ACACTTTTAGTTCTTCTGTC+TGG | + | chr2_1:2574073-2574092 | Msa0187810:intron | 35.0% |
TCTGTCTGGTACTCAATATT+AGG | + | chr2_1:2574087-2574106 | Msa0187810:intron | 35.0% | |
CTGGTACTCAATATTAGGTT+TGG | + | chr2_1:2574092-2574111 | Msa0187810:intron | 35.0% | |
! | TGCTGCTTATAGATCTTGTT+TGG | + | chr2_1:2574124-2574143 | Msa0187810:intron | 35.0% |
CAATAAAAGCCTAAGAAGCA+AGG | - | chr2_1:2574181-2574200 | None:intergenic | 35.0% | |
TTCAAGGAAGAAAATCAGCA+AGG | + | chr2_1:2574289-2574308 | Msa0187810:CDS | 35.0% | |
AAGAAAATCAGCAAGGACAA+GGG | + | chr2_1:2574296-2574315 | Msa0187810:CDS | 35.0% | |
! | ACTATTGTTGTTGCTGTGAT+TGG | + | chr2_1:2574377-2574396 | Msa0187810:intron | 35.0% |
TACATCAATTCTGCAGTGTA+AGG | + | chr2_1:2574516-2574535 | Msa0187810:intron | 35.0% | |
GTGTAAGGATGTGTTCTTTA+TGG | + | chr2_1:2574531-2574550 | Msa0187810:intron | 35.0% | |
TGGCTGTAGATAACAGAAAA+CGG | - | chr2_1:2574601-2574620 | None:intergenic | 35.0% | |
GTGCAGTTAGAAAGAATAAC+TGG | - | chr2_1:2574770-2574789 | None:intergenic | 35.0% | |
CGAGTAGAAGACAAAGAAAT+TGG | - | chr2_1:2574833-2574852 | None:intergenic | 35.0% | |
! | ATTCTGTTTTGCAATCTCCT+TGG | + | chr2_1:2574881-2574900 | Msa0187810:intron | 35.0% |
GTCTAAGCATGTGTTTGATT+TGG | + | chr2_1:2574980-2574999 | Msa0187810:intron | 35.0% | |
GATAAAGAGAAGCTACAAAG+TGG | - | chr2_1:2575055-2575074 | None:intergenic | 35.0% | |
CGTACTAGATACAGAATTGA+TGG | + | chr2_1:2575390-2575409 | Msa0187810:CDS | 35.0% | |
! | AAACGTTTTCTGCAGTTTAC+AGG | + | chr2_1:2575677-2575696 | Msa0187810:CDS | 35.0% |
GTGGTTTATCCAATCCAAAC+AGG | - | chr2_1:2572586-2572605 | None:intergenic | 40.0% | |
!!! | GGCTCTGTTTTTATTGGCAT+AGG | + | chr2_1:2572666-2572685 | Msa0187810:intron | 40.0% |
! | ACAGACCTGTAATGATTTGC+GGG | + | chr2_1:2573741-2573760 | Msa0187810:intron | 40.0% |
TCATACCCGCAAATCATTAC+AGG | - | chr2_1:2573749-2573768 | None:intergenic | 40.0% | |
TGATGTTGTATTTGGACGTC+GGG | + | chr2_1:2574008-2574027 | Msa0187810:intron | 40.0% | |
TGTTTGGTACTAATACTGCG+TGG | + | chr2_1:2574140-2574159 | Msa0187810:intron | 40.0% | |
! | TGATGATGACCTTGCTTCTT+AGG | + | chr2_1:2574169-2574188 | Msa0187810:intron | 40.0% |
GAAGAAAATCAGCAAGGACA+AGG | + | chr2_1:2574295-2574314 | Msa0187810:CDS | 40.0% | |
! | ACTGACTCCTCAAATTCAGT+AGG | - | chr2_1:2574329-2574348 | None:intergenic | 40.0% |
ACTGAATTTGAGGAGTCAGT+TGG | + | chr2_1:2574329-2574348 | Msa0187810:CDS | 40.0% | |
!! | TCAGATCACTTTTGAGCTCA+TGG | - | chr2_1:2574488-2574507 | None:intergenic | 40.0% |
!! | TACAGCCAAGTTGATGTTTC+TGG | + | chr2_1:2574613-2574632 | Msa0187810:intron | 40.0% |
GGTTTCCAGAAACATCAACT+TGG | - | chr2_1:2574621-2574640 | None:intergenic | 40.0% | |
AAATTCACGTCAAGCTCGTT+AGG | + | chr2_1:2574692-2574711 | Msa0187810:CDS | 40.0% | |
AATTCACGTCAAGCTCGTTA+GGG | + | chr2_1:2574693-2574712 | Msa0187810:CDS | 40.0% | |
GAGCTTGAGAAGAAATTCAG+CGG | + | chr2_1:2574715-2574734 | Msa0187810:CDS | 40.0% | |
TGAGAAGAAATTCAGCGGAA+AGG | + | chr2_1:2574720-2574739 | Msa0187810:CDS | 40.0% | |
AACTGAAGTTAATCAGGCTG+CGG | + | chr2_1:2574958-2574977 | Msa0187810:intron | 40.0% | |
TGTTACCTGCTGAGATTGTT+GGG | + | chr2_1:2575364-2575383 | Msa0187810:CDS | 40.0% | |
! | TGATGGATCCAAGATCATGA+AGG | + | chr2_1:2575407-2575426 | Msa0187810:CDS | 40.0% |
!!! | ATAGGTGTTTTTGGACCCAA+AGG | + | chr2_1:2575627-2575646 | Msa0187810:intron | 40.0% |
CAGTTTACAGGAAACTCTCA+GGG | + | chr2_1:2575689-2575708 | Msa0187810:CDS | 40.0% | |
GTTGAAGCTCTCTATGATTC+TGG | + | chr2_1:2575824-2575843 | Msa0187810:three_prime_UTR | 40.0% | |
ATCTGCATCTTCTTCGGCTA+AGG | + | chr2_1:2572269-2572288 | Msa0187810:five_prime_UTR | 45.0% | |
CAGGCCCTAAGATTCATGTT+AGG | - | chr2_1:2572567-2572586 | None:intergenic | 45.0% | |
CATGAATCTTAGGGCCTGTT+TGG | + | chr2_1:2572569-2572588 | Msa0187810:intron | 45.0% | |
ATCTTAGGGCCTGTTTGGAT+TGG | + | chr2_1:2572574-2572593 | Msa0187810:intron | 45.0% | |
TCAAGGGAACGAGTCTGAAT+GGG | - | chr2_1:2573539-2573558 | None:intergenic | 45.0% | |
TTCAAGGGAACGAGTCTGAA+TGG | - | chr2_1:2573540-2573559 | None:intergenic | 45.0% | |
AGCGAGGGGAACACAATTAT+AGG | - | chr2_1:2573971-2573990 | None:intergenic | 45.0% | |
!! | ATTGCAGTAGTGGATAGCGA+GGG | - | chr2_1:2573986-2574005 | None:intergenic | 45.0% |
!! | TATTGCAGTAGTGGATAGCG+AGG | - | chr2_1:2573987-2574006 | None:intergenic | 45.0% |
ATTTGAGGAGTCAGTTGGAC+AGG | + | chr2_1:2574334-2574353 | Msa0187810:CDS | 45.0% | |
!! | GTTGCAGGCTTTGTTTGATC+TGG | + | chr2_1:2574452-2574471 | Msa0187810:intron | 45.0% |
!! | TGATGTTTCTGGAAACCGCA+AGG | + | chr2_1:2574624-2574643 | Msa0187810:CDS | 45.0% |
TATGGATAACCACAGCCTTG+CGG | - | chr2_1:2574642-2574661 | None:intergenic | 45.0% | |
TCCATATCCCCTACAGATTG+AGG | + | chr2_1:2574656-2574675 | Msa0187810:CDS | 45.0% | |
TCCTCAATCTGTAGGGGATA+TGG | - | chr2_1:2574660-2574679 | None:intergenic | 45.0% | |
TATCCCCTACAGATTGAGGA+AGG | + | chr2_1:2574660-2574679 | Msa0187810:CDS | 45.0% | |
ATCCCCTACAGATTGAGGAA+GGG | + | chr2_1:2574661-2574680 | Msa0187810:CDS | 45.0% | |
AACCCCTTCCTCAATCTGTA+GGG | - | chr2_1:2574667-2574686 | None:intergenic | 45.0% | |
! | CGAGCTTGACGTGAATTTTG+CGG | - | chr2_1:2574690-2574709 | None:intergenic | 45.0% |
ATGCCTTGTAATCATGCGAG+TGG | + | chr2_1:2575087-2575106 | Msa0187810:intron | 45.0% | |
TTGCCACTCGCATGATTACA+AGG | - | chr2_1:2575093-2575112 | None:intergenic | 45.0% | |
ATGTAATCCTCATTGCCACC+AGG | + | chr2_1:2575247-2575266 | Msa0187810:CDS | 45.0% | |
GTGTTACCTGCTGAGATTGT+TGG | + | chr2_1:2575363-2575382 | Msa0187810:CDS | 45.0% | |
GCAGTTTACAGGAAACTCTC+AGG | + | chr2_1:2575688-2575707 | Msa0187810:CDS | 45.0% | |
GTTTGAGTACCCTGTTACTG+AGG | + | chr2_1:2575723-2575742 | Msa0187810:CDS | 45.0% | |
GAATCTACGCCTCAGTAACA+GGG | - | chr2_1:2575735-2575754 | None:intergenic | 45.0% | |
AGAATCTACGCCTCAGTAAC+AGG | - | chr2_1:2575736-2575755 | None:intergenic | 45.0% | |
AGCCGCATCTGCATCTTCTT+CGG | + | chr2_1:2572263-2572282 | Msa0187810:five_prime_UTR | 50.0% | |
AGCCGAAGAAGATGCAGATG+CGG | - | chr2_1:2572268-2572287 | None:intergenic | 50.0% | |
GCTTGGATGTCCTCTAATCG+TGG | + | chr2_1:2573181-2573200 | Msa0187810:intron | 50.0% | |
GCTTCACTATCTGGTCGATG+CGG | + | chr2_1:2573501-2573520 | Msa0187810:intron | 50.0% | |
!! | TTGCAGTAGTGGATAGCGAG+GGG | - | chr2_1:2573985-2574004 | None:intergenic | 50.0% |
CGCTGAGCCTACTGAATTTG+AGG | + | chr2_1:2574319-2574338 | Msa0187810:CDS | 50.0% | |
TCCCCTACAGATTGAGGAAG+GGG | + | chr2_1:2574662-2574681 | Msa0187810:CDS | 50.0% | |
ACCCCTTCCTCAATCTGTAG+GGG | - | chr2_1:2574666-2574685 | None:intergenic | 50.0% | |
GAACCCCTTCCTCAATCTGT+AGG | - | chr2_1:2574668-2574687 | None:intergenic | 50.0% | |
ATCGTCAGGCCACCAAAGAA+AGG | + | chr2_1:2575273-2575292 | Msa0187810:CDS | 50.0% | |
CGTTTCCCAACAATCTCAGC+AGG | - | chr2_1:2575372-2575391 | None:intergenic | 50.0% | |
! | TTCTGGAAACCGCAAGGCTG+TGG | + | chr2_1:2574630-2574649 | Msa0187810:CDS | 55.0% |
CGATTCTCCTGGTGGCAATG+AGG | - | chr2_1:2575257-2575276 | None:intergenic | 55.0% | |
TTGCCACCAGGAGAATCGTC+AGG | + | chr2_1:2575259-2575278 | Msa0187810:CDS | 55.0% | |
TGAGCAGCGGAGCCTTTCTT+TGG | - | chr2_1:2575288-2575307 | None:intergenic | 55.0% | |
CGTGGACAGCAGTGAGTGTA+CGG | - | chr2_1:2575323-2575342 | None:intergenic | 55.0% | |
TACACTCACTGCTGTCCACG+AGG | + | chr2_1:2575323-2575342 | Msa0187810:CDS | 55.0% | |
TGGCCTGACGATTCTCCTGG+TGG | - | chr2_1:2575265-2575284 | None:intergenic | 60.0% | |
TGGTGGCCTGACGATTCTCC+TGG | - | chr2_1:2575268-2575287 | None:intergenic | 60.0% | |
GCAGCGGAGCCTTTCTTTGG+TGG | - | chr2_1:2575285-2575304 | None:intergenic | 60.0% | |
TGTCCACGAGGCAATGCTCG+AGG | + | chr2_1:2575335-2575354 | Msa0187810:CDS | 60.0% | |
! | CATCCTCGAGCATTGCCTCG+TGG | - | chr2_1:2575341-2575360 | None:intergenic | 60.0% |
GCAGTGAGTGTACGGCTGCG+TGG | - | chr2_1:2575315-2575334 | None:intergenic | 65.0% | |
GCTGCGTGGACGCTGAGCAG+CGG | - | chr2_1:2575301-2575320 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 2572090 | 2576035 | 2572090 | ID=Msa0187810;Name=Msa0187810 |
chr2_1 | mRNA | 2572090 | 2576035 | 2572090 | ID=Msa0187810-mRNA-1;Parent=Msa0187810;Name=Msa0187810-mRNA-1;_AED=0.04;_eAED=0.04;_QI=216|1|1|1|0.8|0.66|6|285|191 |
chr2_1 | exon | 2572090 | 2572290 | 2572090 | ID=Msa0187810-mRNA-1:exon:1167;Parent=Msa0187810-mRNA-1 |
chr2_1 | exon | 2574266 | 2574355 | 2574266 | ID=Msa0187810-mRNA-1:exon:1168;Parent=Msa0187810-mRNA-1 |
chr2_1 | exon | 2574459 | 2574532 | 2574459 | ID=Msa0187810-mRNA-1:exon:1169;Parent=Msa0187810-mRNA-1 |
chr2_1 | exon | 2574618 | 2574741 | 2574618 | ID=Msa0187810-mRNA-1:exon:1170;Parent=Msa0187810-mRNA-1 |
chr2_1 | exon | 2575246 | 2575428 | 2575246 | ID=Msa0187810-mRNA-1:exon:1171;Parent=Msa0187810-mRNA-1 |
chr2_1 | exon | 2575631 | 2576035 | 2575631 | ID=Msa0187810-mRNA-1:exon:1172;Parent=Msa0187810-mRNA-1 |
chr2_1 | five_prime_UTR | 2572090 | 2572290 | 2572090 | ID=Msa0187810-mRNA-1:five_prime_utr;Parent=Msa0187810-mRNA-1 |
chr2_1 | five_prime_UTR | 2574266 | 2574280 | 2574266 | ID=Msa0187810-mRNA-1:five_prime_utr;Parent=Msa0187810-mRNA-1 |
chr2_1 | CDS | 2574281 | 2574355 | 2574281 | ID=Msa0187810-mRNA-1:cds;Parent=Msa0187810-mRNA-1 |
chr2_1 | CDS | 2574459 | 2574532 | 2574459 | ID=Msa0187810-mRNA-1:cds;Parent=Msa0187810-mRNA-1 |
chr2_1 | CDS | 2574618 | 2574741 | 2574618 | ID=Msa0187810-mRNA-1:cds;Parent=Msa0187810-mRNA-1 |
chr2_1 | CDS | 2575246 | 2575428 | 2575246 | ID=Msa0187810-mRNA-1:cds;Parent=Msa0187810-mRNA-1 |
chr2_1 | CDS | 2575631 | 2575750 | 2575631 | ID=Msa0187810-mRNA-1:cds;Parent=Msa0187810-mRNA-1 |
chr2_1 | three_prime_UTR | 2575751 | 2576035 | 2575751 | ID=Msa0187810-mRNA-1:three_prime_utr;Parent=Msa0187810-mRNA-1 |
Gene Sequence |
Protein sequence |