AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0187810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0187810 MtrunA17_Chr6g0484891 97.906 191 4 0 1 191 1 191 1.73e-137 381
Msa0187810 MtrunA17_Chr6g0458031 97.382 191 5 0 1 191 1 191 3.80e-137 380
Msa0187810 MtrunA17_Chr8g0379651 63.636 44 8 1 145 188 51 86 6.20e-12 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0187810 AT1G48830.1 79.058 191 40 0 1 191 1 191 1.54e-114 324
Msa0187810 AT1G48830.2 79.058 191 40 0 1 191 1 191 1.54e-114 324
Msa0187810 AT3G02560.1 79.581 191 39 0 1 191 1 191 5.73e-113 320
Msa0187810 AT3G02560.3 79.581 191 39 0 1 191 1 191 5.73e-113 320
Msa0187810 AT3G02560.2 79.581 191 39 0 1 191 1 191 5.73e-113 320
Msa0187810 AT5G16130.1 80.319 188 37 0 1 188 1 188 2.00e-112 318

Find 73 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAGCCAAGTTGATGTTTC+TGG 0.145762 2_1:+2574613 Msa0187810:intron
ATATGATGAATGTTTATTTA+TGG 0.222500 2_1:+2575792 Msa0187810:three_prime_UTR
GTTGAAGCTCTCTATGATTC+TGG 0.238608 2_1:+2575824 Msa0187810:three_prime_UTR
TATGATACATTATTTATTAT+AGG 0.254565 2_1:+2575868 Msa0187810:three_prime_UTR
TCCTCAATCTGTAGGGGATA+TGG 0.261869 2_1:-2574657 None:intergenic
AGAATCTACGCCTCAGTAAC+AGG 0.280462 2_1:-2575733 None:intergenic
TTTGTTAACCTATATAGTTT+TGG 0.282836 2_1:-2572182 None:intergenic
TGAGCAGCGGAGCCTTTCTT+TGG 0.288203 2_1:-2575285 None:intergenic
ATAGTTTACCTTCATGATCT+TGG 0.292174 2_1:-2575415 None:intergenic
TTATTATGAAAAGTCTTTCT+TGG 0.331298 2_1:-2575951 None:intergenic
CAACACATATATTTACAAAA+TGG 0.341102 2_1:-2572145 None:intergenic
TAAACCAAGAGTGTTTCATT+AGG 0.349218 2_1:+2572211 Msa0187810:five_prime_UTR
AAATTCACGTCAAGCTCGTT+AGG 0.363074 2_1:+2574692 Msa0187810:CDS
CGTACTAGATACAGAATTGA+TGG 0.367485 2_1:+2575390 Msa0187810:CDS
TATAATAAATAATGTATCAT+AGG 0.369192 2_1:-2575866 None:intergenic
TATTATGAAAAGTCTTTCTT+GGG 0.377421 2_1:-2575950 None:intergenic
AAACCAAGAGTGTTTCATTA+GGG 0.381952 2_1:+2572212 Msa0187810:five_prime_UTR
GTTGCAGGCTTTGTTTGATC+TGG 0.412438 2_1:+2574452 Msa0187810:intron
CGCTGAGCCTACTGAATTTG+AGG 0.426295 2_1:+2574319 Msa0187810:CDS
ACACAAGCCCAAAACTATAT+AGG 0.431675 2_1:+2572174 Msa0187810:five_prime_UTR
GCAGCGGAGCCTTTCTTTGG+TGG 0.435938 2_1:-2575282 None:intergenic
TTGTGAATATGTTTACTTCA+AGG 0.441187 2_1:+2574273 Msa0187810:exon
ATCTGCATCTTCTTCGGCTA+AGG 0.454250 2_1:+2572269 Msa0187810:five_prime_UTR
GCAGTTTACAGGAAACTCTC+AGG 0.456482 2_1:+2575688 Msa0187810:CDS
AACTATATAGGTTAACAAAC+GGG 0.460024 2_1:+2572186 Msa0187810:five_prime_UTR
AGCCGCATCTGCATCTTCTT+CGG 0.466019 2_1:+2572263 Msa0187810:five_prime_UTR
ATTTGAGGAGTCAGTTGGAC+AGG 0.472058 2_1:+2574334 Msa0187810:CDS
TGTTACCTGCTGAGATTGTT+GGG 0.479284 2_1:+2575364 Msa0187810:CDS
AAACTATATAGGTTAACAAA+CGG 0.480311 2_1:+2572185 Msa0187810:five_prime_UTR
TGGTGGCCTGACGATTCTCC+TGG 0.483590 2_1:-2575265 None:intergenic
GTGTTACCTGCTGAGATTGT+TGG 0.484291 2_1:+2575363 Msa0187810:CDS
AAACCCTAATGAAACACTCT+TGG 0.492918 2_1:-2572215 None:intergenic
TCCCCTACAGATTGAGGAAG+GGG 0.499187 2_1:+2574662 Msa0187810:CDS
CGTGGACAGCAGTGAGTGTA+CGG 0.505350 2_1:-2575320 None:intergenic
ATCGTCAGGCCACCAAAGAA+AGG 0.508890 2_1:+2575273 Msa0187810:CDS
TTCTGGAAACCGCAAGGCTG+TGG 0.509249 2_1:+2574630 Msa0187810:CDS
TCCATATCCCCTACAGATTG+AGG 0.509912 2_1:+2574656 Msa0187810:CDS
TTGCCACCAGGAGAATCGTC+AGG 0.510117 2_1:+2575259 Msa0187810:CDS
GAAGAAAATCAGCAAGGACA+AGG 0.510615 2_1:+2574295 Msa0187810:CDS
GAACCCCTTCCTCAATCTGT+AGG 0.515858 2_1:-2574665 None:intergenic
AACCCCTTCCTCAATCTGTA+GGG 0.520673 2_1:-2574664 None:intergenic
ACTGAATTTGAGGAGTCAGT+TGG 0.548538 2_1:+2574329 Msa0187810:CDS
GCGCGCGAGAAGTGTGAAGG+TGG 0.549394 2_1:+2572086 None:intergenic
AATTCACGTCAAGCTCGTTA+GGG 0.550766 2_1:+2574693 Msa0187810:CDS
GCTGCGTGGACGCTGAGCAG+CGG 0.558388 2_1:-2575298 None:intergenic
CGTTTCCCAACAATCTCAGC+AGG 0.558735 2_1:-2575369 None:intergenic
GTTTGAGTACCCTGTTACTG+AGG 0.572498 2_1:+2575723 Msa0187810:CDS
TATCCCCTACAGATTGAGGA+AGG 0.573232 2_1:+2574660 Msa0187810:CDS
GGTTTCCAGAAACATCAACT+TGG 0.575562 2_1:-2574618 None:intergenic
TAAATGATATATTAAAATGA+CGG 0.578845 2_1:+2576004 Msa0187810:three_prime_UTR
ATGTAATCCTCATTGCCACC+AGG 0.584954 2_1:+2575247 Msa0187810:CDS
CGATTCTCCTGGTGGCAATG+AGG 0.590532 2_1:-2575254 None:intergenic
CGCGCGAGAAGTGTGAAGGT+GGG 0.590711 2_1:+2572087 None:intergenic
AAGAAAATCAGCAAGGACAA+GGG 0.599976 2_1:+2574296 Msa0187810:CDS
CAGTTTACAGGAAACTCTCA+GGG 0.612531 2_1:+2575689 Msa0187810:CDS
TGAGAAGAAATTCAGCGGAA+AGG 0.621961 2_1:+2574720 Msa0187810:CDS
TGATGTTTCTGGAAACCGCA+AGG 0.622049 2_1:+2574624 Msa0187810:CDS
ATCCCCTACAGATTGAGGAA+GGG 0.622569 2_1:+2574661 Msa0187810:CDS
ACTGACTCCTCAAATTCAGT+AGG 0.622702 2_1:-2574326 None:intergenic
AGCCGAAGAAGATGCAGATG+CGG 0.627417 2_1:-2572265 None:intergenic
AGGGCGCGCGAGAAGTGTGA+AGG 0.630598 2_1:+2572083 None:intergenic
ACCCCTTCCTCAATCTGTAG+GGG 0.633929 2_1:-2574663 None:intergenic
TGATGGATCCAAGATCATGA+AGG 0.639271 2_1:+2575407 Msa0187810:CDS
TGTCCACGAGGCAATGCTCG+AGG 0.642990 2_1:+2575335 Msa0187810:CDS
TTCAAGGAAGAAAATCAGCA+AGG 0.648771 2_1:+2574289 Msa0187810:CDS
GCAGTGAGTGTACGGCTGCG+TGG 0.657285 2_1:-2575312 None:intergenic
TACACTCACTGCTGTCCACG+AGG 0.659160 2_1:+2575323 Msa0187810:CDS
TGGCCTGACGATTCTCCTGG+TGG 0.662830 2_1:-2575262 None:intergenic
ATGTGATATAACTTGTGTTG+CGG 0.669488 2_1:+2575980 Msa0187810:three_prime_UTR
TATGGATAACCACAGCCTTG+CGG 0.675676 2_1:-2574639 None:intergenic
GAATCTACGCCTCAGTAACA+GGG 0.678065 2_1:-2575732 None:intergenic
CATCCTCGAGCATTGCCTCG+TGG 0.690997 2_1:-2575338 None:intergenic
GAGCTTGAGAAGAAATTCAG+CGG 0.694607 2_1:+2574715 Msa0187810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCATTTGAAATTTAAAAA+TGG + chr2_1:2572461-2572480 Msa0187810:intron 10.0%
!!! TTCATTTGAAATTTAAAAAT+GGG + chr2_1:2572462-2572481 Msa0187810:intron 10.0%
!!! GTAATTTTTATAAACTAAAT+TGG - chr2_1:2572750-2572769 None:intergenic 10.0%
!! TATAATAAATAATGTATCAT+AGG - chr2_1:2575869-2575888 None:intergenic 10.0%
!! TATGATACATTATTTATTAT+AGG + chr2_1:2575868-2575887 Msa0187810:three_prime_UTR 10.0%
!! TAAATGATATATTAAAATGA+CGG + chr2_1:2576004-2576023 Msa0187810:three_prime_UTR 10.0%
!! ATTGTTATAGAAATAGATAA+AGG + chr2_1:2572645-2572664 Msa0187810:intron 15.0%
!!! AAAAATCGTTTTTTATTGAT+TGG + chr2_1:2573656-2573675 Msa0187810:intron 15.0%
!! ATATGATGAATGTTTATTTA+TGG + chr2_1:2575792-2575811 Msa0187810:three_prime_UTR 15.0%
!! CAACACATATATTTACAAAA+TGG - chr2_1:2572148-2572167 None:intergenic 20.0%
!!! CATTTTGTAAATATATGTGT+TGG + chr2_1:2572146-2572165 Msa0187810:five_prime_UTR 20.0%
!!! TTGTTAACCTATATAGTTTT+GGG - chr2_1:2572184-2572203 None:intergenic 20.0%
!!! TTTGTTAACCTATATAGTTT+TGG - chr2_1:2572185-2572204 None:intergenic 20.0%
!! AAACTATATAGGTTAACAAA+CGG + chr2_1:2572185-2572204 Msa0187810:five_prime_UTR 20.0%
!! AACTTTGAATTCAATTAACA+TGG - chr2_1:2572351-2572370 None:intergenic 20.0%
!! ATGAAAACAGTTTATGATAA+AGG + chr2_1:2572715-2572734 Msa0187810:intron 20.0%
!! TGAAAACAGTTTATGATAAA+GGG + chr2_1:2572716-2572735 Msa0187810:intron 20.0%
!!! AAACGATTTAACTTAACTTT+GGG - chr2_1:2572875-2572894 None:intergenic 20.0%
!!! AAAACGATTTAACTTAACTT+TGG - chr2_1:2572876-2572895 None:intergenic 20.0%
!!! GTAGTTTTTATAAGCTATAT+TGG + chr2_1:2572910-2572929 Msa0187810:intron 20.0%
!!! ATTTTATCAGTGAATATGAT+TGG + chr2_1:2573205-2573224 Msa0187810:intron 20.0%
!!! TTTTCTTTTTGTTTTTTCCT+CGG + chr2_1:2573368-2573387 Msa0187810:intron 20.0%
!!! TATGCTTTTTTTTGTCTAAT+GGG + chr2_1:2573436-2573455 Msa0187810:intron 20.0%
!! TTTGAATCATTTGAGAAAAT+TGG + chr2_1:2573688-2573707 Msa0187810:intron 20.0%
!! TTGAATCATTTGAGAAAATT+GGG + chr2_1:2573689-2573708 Msa0187810:intron 20.0%
!! GAAACATTAACAAGAAAAAT+GGG - chr2_1:2573819-2573838 None:intergenic 20.0%
!! AGAAACATTAACAAGAAAAA+TGG - chr2_1:2573820-2573839 None:intergenic 20.0%
!!! TTTTTCAATATTTTGTTTCG+TGG + chr2_1:2573883-2573902 Msa0187810:intron 20.0%
!!! AGGTTATATATTGATTACTA+CGG + chr2_1:2574354-2574373 Msa0187810:intron 20.0%
!! AAATTGGAACAAAAAATTGT+CGG - chr2_1:2574817-2574836 None:intergenic 20.0%
!! AGAATAAAGTTCTTGAAATA+AGG - chr2_1:2574866-2574885 None:intergenic 20.0%
!! TTAAAGCAATTTAAAAACCA+AGG - chr2_1:2574901-2574920 None:intergenic 20.0%
!! CAAATTATTTAGTGTATGTT+TGG - chr2_1:2575131-2575150 None:intergenic 20.0%
!! TATTATGAAAAGTCTTTCTT+GGG - chr2_1:2575953-2575972 None:intergenic 20.0%
!! TTATTATGAAAAGTCTTTCT+TGG - chr2_1:2575954-2575973 None:intergenic 20.0%
!!! TGTTTTCCAACTTTTTTCTT+GGG - chr2_1:2572123-2572142 None:intergenic 25.0%
!!! ATGTTTTCCAACTTTTTTCT+TGG - chr2_1:2572124-2572143 None:intergenic 25.0%
! AACTATATAGGTTAACAAAC+GGG + chr2_1:2572186-2572205 Msa0187810:five_prime_UTR 25.0%
! TAGAGCAATAAATCGTAAAA+GGG - chr2_1:2572308-2572327 None:intergenic 25.0%
! ATAGAGCAATAAATCGTAAA+AGG - chr2_1:2572309-2572328 None:intergenic 25.0%
!!! TCTTTCTAAACCCTATTTTT+TGG + chr2_1:2572384-2572403 Msa0187810:intron 25.0%
! GATTGATATGGTTAATTACT+TGG + chr2_1:2572525-2572544 Msa0187810:intron 25.0%
! TAAATTAAGCTGCAAATAAG+TGG - chr2_1:2572605-2572624 None:intergenic 25.0%
! TAAATTGCTGTGTAACTATA+AGG + chr2_1:2573096-2573115 Msa0187810:intron 25.0%
!! ATACTTGACATTTTTATGCT+TGG + chr2_1:2573164-2573183 Msa0187810:intron 25.0%
!!! CTATGCTTTTTTTTGTCTAA+TGG + chr2_1:2573435-2573454 Msa0187810:intron 25.0%
! GAAATTTGTGATGTAATAGT+AGG + chr2_1:2573479-2573498 Msa0187810:intron 25.0%
! ACATATTACTATTGCTTCAA+GGG - chr2_1:2573555-2573574 None:intergenic 25.0%
! AAAACCAAAATAAAGGATTG+TGG - chr2_1:2573598-2573617 None:intergenic 25.0%
!!! ACAATCCTTTATTTTGGTTT+TGG + chr2_1:2573597-2573616 Msa0187810:intron 25.0%
!!! CAATCCTTTATTTTGGTTTT+GGG + chr2_1:2573598-2573617 Msa0187810:intron 25.0%
!! CAGATTTTATGAACATCTAA+GGG + chr2_1:2573772-2573791 Msa0187810:intron 25.0%
!! AGATTTTATGAACATCTAAG+GGG + chr2_1:2573773-2573792 Msa0187810:intron 25.0%
!!! GTTTCTGTTGTTTTTATGTT+TGG + chr2_1:2573834-2573853 Msa0187810:intron 25.0%
! TGCAATAATGATGTTGTATT+TGG + chr2_1:2574000-2574019 Msa0187810:intron 25.0%
! TTGTGAATATGTTTACTTCA+AGG + chr2_1:2574273-2574292 Msa0187810:exon 25.0%
! TATTTAGTGTATGTTTGGTT+TGG - chr2_1:2575126-2575145 None:intergenic 25.0%
!! TGTGAGAAAACAATTTTTCA+AGG - chr2_1:2575172-2575191 None:intergenic 25.0%
!!! AGTAACTTTTGGAAATTGTT+TGG - chr2_1:2575449-2575468 None:intergenic 25.0%
!!! TGCTTATTTTCACATTAGTT+TGG - chr2_1:2575505-2575524 None:intergenic 25.0%
!!! GATTCTATTTTTCTCAGTTT+TGG + chr2_1:2575750-2575769 Msa0187810:exon 25.0%
GAAATTCCCAAGAAAAAAGT+TGG + chr2_1:2572114-2572133 Msa0187810:five_prime_UTR 30.0%
!! TAAACCAAGAGTGTTTCATT+AGG + chr2_1:2572211-2572230 Msa0187810:five_prime_UTR 30.0%
!! AAACCAAGAGTGTTTCATTA+GGG + chr2_1:2572212-2572231 Msa0187810:five_prime_UTR 30.0%
CATCGTTGTACCAAAAAATA+GGG - chr2_1:2572397-2572416 None:intergenic 30.0%
TCATCGTTGTACCAAAAAAT+AGG - chr2_1:2572398-2572417 None:intergenic 30.0%
!!! TTTTGTTGCACTGATTGATA+TGG + chr2_1:2572513-2572532 Msa0187810:intron 30.0%
TGTAACCTAACATGAATCTT+AGG + chr2_1:2572559-2572578 Msa0187810:intron 30.0%
GTAACCTAACATGAATCTTA+GGG + chr2_1:2572560-2572579 Msa0187810:intron 30.0%
!!! GATAAAGGCTCTGTTTTTAT+TGG + chr2_1:2572660-2572679 Msa0187810:intron 30.0%
TTATACACAAGTGCTTATCA+TGG + chr2_1:2572806-2572825 Msa0187810:intron 30.0%
AATTTAGACTAAGGGCTATT+TGG - chr2_1:2573082-2573101 None:intergenic 30.0%
TACACAGCAATTTAGACTAA+GGG - chr2_1:2573090-2573109 None:intergenic 30.0%
TTACACAGCAATTTAGACTA+AGG - chr2_1:2573091-2573110 None:intergenic 30.0%
TGATAAAATACCACGATTAG+AGG - chr2_1:2573194-2573213 None:intergenic 30.0%
! ATCCTGACATGTTGAATTTT+AGG + chr2_1:2573304-2573323 Msa0187810:intron 30.0%
CACATATTACTATTGCTTCA+AGG - chr2_1:2573556-2573575 None:intergenic 30.0%
!! ACTTCCACAATCCTTTATTT+TGG + chr2_1:2573591-2573610 Msa0187810:intron 30.0%
TTCTCCCAAAACCAAAATAA+AGG - chr2_1:2573605-2573624 None:intergenic 30.0%
! GCAGATTTTATGAACATCTA+AGG + chr2_1:2573771-2573790 Msa0187810:intron 30.0%
!!! TGTTTTCAATTTGTTGTTGC+AGG + chr2_1:2574437-2574456 Msa0187810:intron 30.0%
TTAGAAAGAATAACTGGCAA+AGG - chr2_1:2574764-2574783 None:intergenic 30.0%
GACAGAATCGTAATAAAAGA+TGG - chr2_1:2574792-2574811 None:intergenic 30.0%
CTGTAAAACTGAAGTTAATC+AGG + chr2_1:2574952-2574971 Msa0187810:intron 30.0%
AACAAAAACTCACGATTACA+TGG + chr2_1:2575024-2575043 Msa0187810:intron 30.0%
CTAATGAACCTTAAACTTGT+AGG + chr2_1:2575224-2575243 Msa0187810:intron 30.0%
GATTACATCCTACAAGTTTA+AGG - chr2_1:2575235-2575254 None:intergenic 30.0%
ATAGTTTACCTTCATGATCT+TGG - chr2_1:2575418-2575437 None:intergenic 30.0%
!!! TTCAAGCTTTGAGTAACTTT+TGG - chr2_1:2575460-2575479 None:intergenic 30.0%
! TCTTGTGTTTCTGTGTATAT+AGG + chr2_1:2575609-2575628 Msa0187810:intron 30.0%
! TCTGTGTATATAGGTGTTTT+TGG + chr2_1:2575618-2575637 Msa0187810:intron 30.0%
!! CAGTATTGTTTTTCTCCTTT+GGG - chr2_1:2575645-2575664 None:intergenic 30.0%
!! TCAGTATTGTTTTTCTCCTT+TGG - chr2_1:2575646-2575665 None:intergenic 30.0%
CACATAGCAAAAAAGTCATT+TGG - chr2_1:2575896-2575915 None:intergenic 30.0%
!!! CAAATGACTTTTTTGCTATG+TGG + chr2_1:2575894-2575913 Msa0187810:three_prime_UTR 30.0%
! ATGTGATATAACTTGTGTTG+CGG + chr2_1:2575980-2575999 Msa0187810:three_prime_UTR 30.0%
!!! ATAGTTTTGGGCTTGTGTTT+GGG - chr2_1:2572172-2572191 None:intergenic 35.0%
!!! TATAGTTTTGGGCTTGTGTT+TGG - chr2_1:2572173-2572192 None:intergenic 35.0%
ACACAAGCCCAAAACTATAT+AGG + chr2_1:2572174-2572193 Msa0187810:five_prime_UTR 35.0%
AAACCCTAATGAAACACTCT+TGG - chr2_1:2572218-2572237 None:intergenic 35.0%
TAGGATTTGTGAGACAGTTT+AGG + chr2_1:2572685-2572704 Msa0187810:intron 35.0%
AACTTAACTTTGGGTCTGTT+TGG - chr2_1:2572866-2572885 None:intergenic 35.0%
AGCATAAACATCAACACACA+AGG - chr2_1:2573271-2573290 None:intergenic 35.0%
AGCCTAAAATTCAACATGTC+AGG - chr2_1:2573309-2573328 None:intergenic 35.0%
CTTAAACAATGCTTTAACCG+AGG - chr2_1:2573388-2573407 None:intergenic 35.0%
GCATTGTTTAAGTAGAAGCT+TGG + chr2_1:2573396-2573415 Msa0187810:intron 35.0%
TAATAGTAGGCTTCACTATC+TGG + chr2_1:2573492-2573511 Msa0187810:intron 35.0%
AACAGACCTGTAATGATTTG+CGG + chr2_1:2573740-2573759 Msa0187810:intron 35.0%
CAACATCATTATTGCAGTAG+TGG - chr2_1:2573996-2574015 None:intergenic 35.0%
ATGATGTTGTATTTGGACGT+CGG + chr2_1:2574007-2574026 Msa0187810:intron 35.0%
!!! ACACTTTTAGTTCTTCTGTC+TGG + chr2_1:2574073-2574092 Msa0187810:intron 35.0%
TCTGTCTGGTACTCAATATT+AGG + chr2_1:2574087-2574106 Msa0187810:intron 35.0%
CTGGTACTCAATATTAGGTT+TGG + chr2_1:2574092-2574111 Msa0187810:intron 35.0%
! TGCTGCTTATAGATCTTGTT+TGG + chr2_1:2574124-2574143 Msa0187810:intron 35.0%
CAATAAAAGCCTAAGAAGCA+AGG - chr2_1:2574181-2574200 None:intergenic 35.0%
TTCAAGGAAGAAAATCAGCA+AGG + chr2_1:2574289-2574308 Msa0187810:CDS 35.0%
AAGAAAATCAGCAAGGACAA+GGG + chr2_1:2574296-2574315 Msa0187810:CDS 35.0%
! ACTATTGTTGTTGCTGTGAT+TGG + chr2_1:2574377-2574396 Msa0187810:intron 35.0%
TACATCAATTCTGCAGTGTA+AGG + chr2_1:2574516-2574535 Msa0187810:intron 35.0%
GTGTAAGGATGTGTTCTTTA+TGG + chr2_1:2574531-2574550 Msa0187810:intron 35.0%
TGGCTGTAGATAACAGAAAA+CGG - chr2_1:2574601-2574620 None:intergenic 35.0%
GTGCAGTTAGAAAGAATAAC+TGG - chr2_1:2574770-2574789 None:intergenic 35.0%
CGAGTAGAAGACAAAGAAAT+TGG - chr2_1:2574833-2574852 None:intergenic 35.0%
! ATTCTGTTTTGCAATCTCCT+TGG + chr2_1:2574881-2574900 Msa0187810:intron 35.0%
GTCTAAGCATGTGTTTGATT+TGG + chr2_1:2574980-2574999 Msa0187810:intron 35.0%
GATAAAGAGAAGCTACAAAG+TGG - chr2_1:2575055-2575074 None:intergenic 35.0%
CGTACTAGATACAGAATTGA+TGG + chr2_1:2575390-2575409 Msa0187810:CDS 35.0%
! AAACGTTTTCTGCAGTTTAC+AGG + chr2_1:2575677-2575696 Msa0187810:CDS 35.0%
GTGGTTTATCCAATCCAAAC+AGG - chr2_1:2572586-2572605 None:intergenic 40.0%
!!! GGCTCTGTTTTTATTGGCAT+AGG + chr2_1:2572666-2572685 Msa0187810:intron 40.0%
! ACAGACCTGTAATGATTTGC+GGG + chr2_1:2573741-2573760 Msa0187810:intron 40.0%
TCATACCCGCAAATCATTAC+AGG - chr2_1:2573749-2573768 None:intergenic 40.0%
TGATGTTGTATTTGGACGTC+GGG + chr2_1:2574008-2574027 Msa0187810:intron 40.0%
TGTTTGGTACTAATACTGCG+TGG + chr2_1:2574140-2574159 Msa0187810:intron 40.0%
! TGATGATGACCTTGCTTCTT+AGG + chr2_1:2574169-2574188 Msa0187810:intron 40.0%
GAAGAAAATCAGCAAGGACA+AGG + chr2_1:2574295-2574314 Msa0187810:CDS 40.0%
! ACTGACTCCTCAAATTCAGT+AGG - chr2_1:2574329-2574348 None:intergenic 40.0%
ACTGAATTTGAGGAGTCAGT+TGG + chr2_1:2574329-2574348 Msa0187810:CDS 40.0%
!! TCAGATCACTTTTGAGCTCA+TGG - chr2_1:2574488-2574507 None:intergenic 40.0%
!! TACAGCCAAGTTGATGTTTC+TGG + chr2_1:2574613-2574632 Msa0187810:intron 40.0%
GGTTTCCAGAAACATCAACT+TGG - chr2_1:2574621-2574640 None:intergenic 40.0%
AAATTCACGTCAAGCTCGTT+AGG + chr2_1:2574692-2574711 Msa0187810:CDS 40.0%
AATTCACGTCAAGCTCGTTA+GGG + chr2_1:2574693-2574712 Msa0187810:CDS 40.0%
GAGCTTGAGAAGAAATTCAG+CGG + chr2_1:2574715-2574734 Msa0187810:CDS 40.0%
TGAGAAGAAATTCAGCGGAA+AGG + chr2_1:2574720-2574739 Msa0187810:CDS 40.0%
AACTGAAGTTAATCAGGCTG+CGG + chr2_1:2574958-2574977 Msa0187810:intron 40.0%
TGTTACCTGCTGAGATTGTT+GGG + chr2_1:2575364-2575383 Msa0187810:CDS 40.0%
! TGATGGATCCAAGATCATGA+AGG + chr2_1:2575407-2575426 Msa0187810:CDS 40.0%
!!! ATAGGTGTTTTTGGACCCAA+AGG + chr2_1:2575627-2575646 Msa0187810:intron 40.0%
CAGTTTACAGGAAACTCTCA+GGG + chr2_1:2575689-2575708 Msa0187810:CDS 40.0%
GTTGAAGCTCTCTATGATTC+TGG + chr2_1:2575824-2575843 Msa0187810:three_prime_UTR 40.0%
ATCTGCATCTTCTTCGGCTA+AGG + chr2_1:2572269-2572288 Msa0187810:five_prime_UTR 45.0%
CAGGCCCTAAGATTCATGTT+AGG - chr2_1:2572567-2572586 None:intergenic 45.0%
CATGAATCTTAGGGCCTGTT+TGG + chr2_1:2572569-2572588 Msa0187810:intron 45.0%
ATCTTAGGGCCTGTTTGGAT+TGG + chr2_1:2572574-2572593 Msa0187810:intron 45.0%
TCAAGGGAACGAGTCTGAAT+GGG - chr2_1:2573539-2573558 None:intergenic 45.0%
TTCAAGGGAACGAGTCTGAA+TGG - chr2_1:2573540-2573559 None:intergenic 45.0%
AGCGAGGGGAACACAATTAT+AGG - chr2_1:2573971-2573990 None:intergenic 45.0%
!! ATTGCAGTAGTGGATAGCGA+GGG - chr2_1:2573986-2574005 None:intergenic 45.0%
!! TATTGCAGTAGTGGATAGCG+AGG - chr2_1:2573987-2574006 None:intergenic 45.0%
ATTTGAGGAGTCAGTTGGAC+AGG + chr2_1:2574334-2574353 Msa0187810:CDS 45.0%
!! GTTGCAGGCTTTGTTTGATC+TGG + chr2_1:2574452-2574471 Msa0187810:intron 45.0%
!! TGATGTTTCTGGAAACCGCA+AGG + chr2_1:2574624-2574643 Msa0187810:CDS 45.0%
TATGGATAACCACAGCCTTG+CGG - chr2_1:2574642-2574661 None:intergenic 45.0%
TCCATATCCCCTACAGATTG+AGG + chr2_1:2574656-2574675 Msa0187810:CDS 45.0%
TCCTCAATCTGTAGGGGATA+TGG - chr2_1:2574660-2574679 None:intergenic 45.0%
TATCCCCTACAGATTGAGGA+AGG + chr2_1:2574660-2574679 Msa0187810:CDS 45.0%
ATCCCCTACAGATTGAGGAA+GGG + chr2_1:2574661-2574680 Msa0187810:CDS 45.0%
AACCCCTTCCTCAATCTGTA+GGG - chr2_1:2574667-2574686 None:intergenic 45.0%
! CGAGCTTGACGTGAATTTTG+CGG - chr2_1:2574690-2574709 None:intergenic 45.0%
ATGCCTTGTAATCATGCGAG+TGG + chr2_1:2575087-2575106 Msa0187810:intron 45.0%
TTGCCACTCGCATGATTACA+AGG - chr2_1:2575093-2575112 None:intergenic 45.0%
ATGTAATCCTCATTGCCACC+AGG + chr2_1:2575247-2575266 Msa0187810:CDS 45.0%
GTGTTACCTGCTGAGATTGT+TGG + chr2_1:2575363-2575382 Msa0187810:CDS 45.0%
GCAGTTTACAGGAAACTCTC+AGG + chr2_1:2575688-2575707 Msa0187810:CDS 45.0%
GTTTGAGTACCCTGTTACTG+AGG + chr2_1:2575723-2575742 Msa0187810:CDS 45.0%
GAATCTACGCCTCAGTAACA+GGG - chr2_1:2575735-2575754 None:intergenic 45.0%
AGAATCTACGCCTCAGTAAC+AGG - chr2_1:2575736-2575755 None:intergenic 45.0%
AGCCGCATCTGCATCTTCTT+CGG + chr2_1:2572263-2572282 Msa0187810:five_prime_UTR 50.0%
AGCCGAAGAAGATGCAGATG+CGG - chr2_1:2572268-2572287 None:intergenic 50.0%
GCTTGGATGTCCTCTAATCG+TGG + chr2_1:2573181-2573200 Msa0187810:intron 50.0%
GCTTCACTATCTGGTCGATG+CGG + chr2_1:2573501-2573520 Msa0187810:intron 50.0%
!! TTGCAGTAGTGGATAGCGAG+GGG - chr2_1:2573985-2574004 None:intergenic 50.0%
CGCTGAGCCTACTGAATTTG+AGG + chr2_1:2574319-2574338 Msa0187810:CDS 50.0%
TCCCCTACAGATTGAGGAAG+GGG + chr2_1:2574662-2574681 Msa0187810:CDS 50.0%
ACCCCTTCCTCAATCTGTAG+GGG - chr2_1:2574666-2574685 None:intergenic 50.0%
GAACCCCTTCCTCAATCTGT+AGG - chr2_1:2574668-2574687 None:intergenic 50.0%
ATCGTCAGGCCACCAAAGAA+AGG + chr2_1:2575273-2575292 Msa0187810:CDS 50.0%
CGTTTCCCAACAATCTCAGC+AGG - chr2_1:2575372-2575391 None:intergenic 50.0%
! TTCTGGAAACCGCAAGGCTG+TGG + chr2_1:2574630-2574649 Msa0187810:CDS 55.0%
CGATTCTCCTGGTGGCAATG+AGG - chr2_1:2575257-2575276 None:intergenic 55.0%
TTGCCACCAGGAGAATCGTC+AGG + chr2_1:2575259-2575278 Msa0187810:CDS 55.0%
TGAGCAGCGGAGCCTTTCTT+TGG - chr2_1:2575288-2575307 None:intergenic 55.0%
CGTGGACAGCAGTGAGTGTA+CGG - chr2_1:2575323-2575342 None:intergenic 55.0%
TACACTCACTGCTGTCCACG+AGG + chr2_1:2575323-2575342 Msa0187810:CDS 55.0%
TGGCCTGACGATTCTCCTGG+TGG - chr2_1:2575265-2575284 None:intergenic 60.0%
TGGTGGCCTGACGATTCTCC+TGG - chr2_1:2575268-2575287 None:intergenic 60.0%
GCAGCGGAGCCTTTCTTTGG+TGG - chr2_1:2575285-2575304 None:intergenic 60.0%
TGTCCACGAGGCAATGCTCG+AGG + chr2_1:2575335-2575354 Msa0187810:CDS 60.0%
! CATCCTCGAGCATTGCCTCG+TGG - chr2_1:2575341-2575360 None:intergenic 60.0%
GCAGTGAGTGTACGGCTGCG+TGG - chr2_1:2575315-2575334 None:intergenic 65.0%
GCTGCGTGGACGCTGAGCAG+CGG - chr2_1:2575301-2575320 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 2572090 2576035 2572090 ID=Msa0187810;Name=Msa0187810
chr2_1 mRNA 2572090 2576035 2572090 ID=Msa0187810-mRNA-1;Parent=Msa0187810;Name=Msa0187810-mRNA-1;_AED=0.04;_eAED=0.04;_QI=216|1|1|1|0.8|0.66|6|285|191
chr2_1 exon 2572090 2572290 2572090 ID=Msa0187810-mRNA-1:exon:1167;Parent=Msa0187810-mRNA-1
chr2_1 exon 2574266 2574355 2574266 ID=Msa0187810-mRNA-1:exon:1168;Parent=Msa0187810-mRNA-1
chr2_1 exon 2574459 2574532 2574459 ID=Msa0187810-mRNA-1:exon:1169;Parent=Msa0187810-mRNA-1
chr2_1 exon 2574618 2574741 2574618 ID=Msa0187810-mRNA-1:exon:1170;Parent=Msa0187810-mRNA-1
chr2_1 exon 2575246 2575428 2575246 ID=Msa0187810-mRNA-1:exon:1171;Parent=Msa0187810-mRNA-1
chr2_1 exon 2575631 2576035 2575631 ID=Msa0187810-mRNA-1:exon:1172;Parent=Msa0187810-mRNA-1
chr2_1 five_prime_UTR 2572090 2572290 2572090 ID=Msa0187810-mRNA-1:five_prime_utr;Parent=Msa0187810-mRNA-1
chr2_1 five_prime_UTR 2574266 2574280 2574266 ID=Msa0187810-mRNA-1:five_prime_utr;Parent=Msa0187810-mRNA-1
chr2_1 CDS 2574281 2574355 2574281 ID=Msa0187810-mRNA-1:cds;Parent=Msa0187810-mRNA-1
chr2_1 CDS 2574459 2574532 2574459 ID=Msa0187810-mRNA-1:cds;Parent=Msa0187810-mRNA-1
chr2_1 CDS 2574618 2574741 2574618 ID=Msa0187810-mRNA-1:cds;Parent=Msa0187810-mRNA-1
chr2_1 CDS 2575246 2575428 2575246 ID=Msa0187810-mRNA-1:cds;Parent=Msa0187810-mRNA-1
chr2_1 CDS 2575631 2575750 2575631 ID=Msa0187810-mRNA-1:cds;Parent=Msa0187810-mRNA-1
chr2_1 three_prime_UTR 2575751 2576035 2575751 ID=Msa0187810-mRNA-1:three_prime_utr;Parent=Msa0187810-mRNA-1
Gene Sequence

>Msa0187810

ATGTTTACTTCAAGGAAGAAAATCAGCAAGGACAAGGGCGCTGAGCCTACTGAATTTGAGGAGTCAGTTGGACAGGCTTTGTTTGATCTGGAAAACACTAACCATGAGCTCAAAAGTGATCTGAAAGATTTATACATCAATTCTGCAGTCCAAGTTGATGTTTCTGGAAACCGCAAGGCTGTGGTTATCCATATCCCCTACAGATTGAGGAAGGGGTTCCGCAAAATTCACGTCAAGCTCGTTAGGGAGCTTGAGAAGAAATTCAGCGGAAAGGATGTAATCCTCATTGCCACCAGGAGAATCGTCAGGCCACCAAAGAAAGGCTCCGCTGCTCAGCGTCCACGCAGCCGTACACTCACTGCTGTCCACGAGGCAATGCTCGAGGATGTCGTGTTACCTGCTGAGATTGTTGGGAAACGTACTAGATACAGAATTGATGGATCCAAGATCATGAAGGTGTTTTTGGACCCAAAGGAGAAAAACAATACTGAATACAAGCTCGAAACGTTTTCTGCAGTTTACAGGAAACTCTCAGGGAAAGATGTTGTGTTTGAGTACCCTGTTACTGAGGCGTAG

Protein sequence

>Msa0187810

MFTSRKKISKDKGAEPTEFEESVGQALFDLENTNHELKSDLKDLYINSAVQVDVSGNRKAVVIHIPYRLRKGFRKIHVKLVRELEKKFSGKDVILIATRRIVRPPKKGSAAQRPRSRTLTAVHEAMLEDVVLPAEIVGKRTRYRIDGSKIMKVFLDPKEKNNTEYKLETFSAVYRKLSGKDVVFEYPVTEA*