Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0933240 | sp|Q6PAX2|ATD3B_XENLA | 33.989 | 356 | 201 | 6 | 44 | 391 | 37 | 366 | 1.91e-49 | 180 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0933240 | G7KHK9 | 93.590 | 390 | 22 | 1 | 1 | 390 | 1 | 387 | 0.0 | 724 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043660 | Msa0933240 | 0.826064 | 3.330551e-54 | -8.615850e-47 |
| Msa0054440 | Msa0933240 | 0.801928 | 7.143347e-49 | -8.615850e-47 |
| Msa0059040 | Msa0933240 | 0.804513 | 2.083488e-49 | -8.615850e-47 |
| Msa0059110 | Msa0933240 | 0.812722 | 3.674560e-51 | -8.615850e-47 |
| Msa0067630 | Msa0933240 | 0.806043 | 9.962823e-50 | -8.615850e-47 |
| Msa0070700 | Msa0933240 | 0.800076 | 1.708014e-48 | -8.615850e-47 |
| Msa0115130 | Msa0933240 | 0.812333 | 4.468489e-51 | -8.615850e-47 |
| Msa0118590 | Msa0933240 | 0.801702 | 7.947353e-49 | -8.615850e-47 |
| Msa0605000 | Msa0933240 | 0.806276 | 8.897681e-50 | -8.615850e-47 |
| Msa0685140 | Msa0933240 | 0.809001 | 2.347712e-50 | -8.615850e-47 |
| Msa0689260 | Msa0933240 | 0.823931 | 1.061765e-53 | -8.615850e-47 |
| Msa0711780 | Msa0933240 | 0.821352 | 4.226227e-53 | -8.615850e-47 |
| Msa0719420 | Msa0933240 | 0.806069 | 9.836095e-50 | -8.615850e-47 |
| Msa0763330 | Msa0933240 | 0.808432 | 3.106168e-50 | -8.615850e-47 |
| Msa0772480 | Msa0933240 | 0.813750 | 2.185180e-51 | -8.615850e-47 |
| Msa0789680 | Msa0933240 | 0.806954 | 6.399189e-50 | -8.615850e-47 |
| Msa0794670 | Msa0933240 | 0.826021 | 3.408683e-54 | -8.615850e-47 |
| Msa0798440 | Msa0933240 | 0.801791 | 7.622649e-49 | -8.615850e-47 |
| Msa0802410 | Msa0933240 | 0.815816 | 7.616741e-52 | -8.615850e-47 |
| Msa0830040 | Msa0933240 | 0.812229 | 4.708316e-51 | -8.615850e-47 |
| Msa0830540 | Msa0933240 | 0.821253 | 4.455137e-53 | -8.615850e-47 |
| Msa0831530 | Msa0933240 | 0.803653 | 3.146049e-49 | -8.615850e-47 |
| Msa0127020 | Msa0933240 | 0.803443 | 3.478110e-49 | -8.615850e-47 |
| Msa0137550 | Msa0933240 | 0.821915 | 3.132094e-53 | -8.615850e-47 |
| Msa0144370 | Msa0933240 | 0.809279 | 2.046551e-50 | -8.615850e-47 |
| Msa0159170 | Msa0933240 | 0.833870 | 4.159638e-56 | -8.615850e-47 |
| Msa0168230 | Msa0933240 | 0.803663 | 3.131248e-49 | -8.615850e-47 |
| Msa0169280 | Msa0933240 | 0.806173 | 9.355030e-50 | -8.615850e-47 |
| Msa0189300 | Msa0933240 | 0.800702 | 1.273134e-48 | -8.615850e-47 |
| Msa0388700 | Msa0933240 | 0.805811 | 1.114946e-49 | -8.615850e-47 |
| Msa0402650 | Msa0933240 | 0.821055 | 4.948677e-53 | -8.615850e-47 |
| Msa0271530 | Msa0933240 | 0.806255 | 8.988327e-50 | -8.615850e-47 |
| Msa0299870 | Msa0933240 | 0.800180 | 1.626169e-48 | -8.615850e-47 |
| Msa0351990 | Msa0933240 | 0.800809 | 1.210738e-48 | -8.615850e-47 |
| Msa0542090 | Msa0933240 | 0.809252 | 2.073791e-50 | -8.615850e-47 |
| Msa0542130 | Msa0933240 | 0.805838 | 1.099966e-49 | -8.615850e-47 |
| Msa0554290 | Msa0933240 | 0.814524 | 1.474467e-51 | -8.615850e-47 |
| Msa0573140 | Msa0933240 | 0.812464 | 4.183711e-51 | -8.615850e-47 |
| Msa0869130 | Msa0933240 | 0.827671 | 1.375430e-54 | -8.615850e-47 |
| Msa0933240 | Msa0933300 | 0.815844 | 7.505721e-52 | -8.615850e-47 |
| Msa0933240 | Msa0945440 | 0.813091 | 3.049747e-51 | -8.615850e-47 |
| Msa0933240 | Msa0989540 | 0.808192 | 3.495213e-50 | -8.615850e-47 |
| Msa0933240 | Msa1153060 | 0.810339 | 1.210907e-50 | -8.615850e-47 |
| Msa0933240 | Msa1160590 | 0.801358 | 9.348204e-49 | -8.615850e-47 |
| Msa0933240 | Msa1209760 | 0.820497 | 6.648397e-53 | -8.615850e-47 |
| Msa0933240 | Msa1358250 | 0.823051 | 1.705307e-53 | -8.615850e-47 |
| Msa0933240 | Msa1392780 | 0.803733 | 3.028292e-49 | -8.615850e-47 |
| Msa0933240 | Msa1394290 | 0.821302 | 4.340028e-53 | -8.615850e-47 |
| Msa0933240 | Msa1419870 | 0.809491 | 1.842975e-50 | -8.615850e-47 |
| Msa0933240 | Msa1457920 | 0.819867 | 9.270343e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0933240 | MtrunA17_Chr6g0450161 | 93.590 | 390 | 22 | 1 | 1 | 390 | 1 | 387 | 0.0 | 724 |
| Msa0933240 | MtrunA17_Chr4g0039781 | 59.446 | 397 | 150 | 2 | 1 | 390 | 1 | 393 | 2.56e-152 | 446 |
| Msa0933240 | MtrunA17_Chr5g0404291 | 50.820 | 366 | 167 | 3 | 35 | 390 | 50 | 412 | 6.67e-116 | 353 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0933240 | AT3G03060.1 | 68.333 | 360 | 109 | 2 | 33 | 390 | 54 | 410 | 4.57e-177 | 509 |
| Msa0933240 | AT5G16930.1 | 63.171 | 391 | 133 | 3 | 10 | 390 | 33 | 422 | 5.34e-173 | 500 |
| Msa0933240 | AT2G18330.1 | 55.556 | 360 | 158 | 1 | 31 | 390 | 52 | 409 | 4.00e-126 | 380 |
| Msa0933240 | AT4G36580.1 | 53.933 | 356 | 161 | 2 | 35 | 390 | 54 | 406 | 3.59e-125 | 377 |
Find 102 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAAAATCATCTTTCTTAA+AGG | 0.156772 | 6_3:+1739820 | Msa0933240:CDS |
| GCCATTGTCTTCCCTGTTCC+TGG | 0.205135 | 6_3:-1739502 | None:intergenic |
| TCAAATAATGGAAAGGGTTT+TGG | 0.219162 | 6_3:+1739367 | Msa0933240:CDS |
| GGGAAGGTGCACGGGTTATT+TGG | 0.224243 | 6_3:+1739215 | Msa0933240:intron |
| GGGATATGTTGATAGAATAT+TGG | 0.232274 | 6_3:+1739237 | Msa0933240:CDS |
| CCAGAATCTGTTTCAAATAA+TGG | 0.246142 | 6_3:+1739355 | Msa0933240:CDS |
| GGAAGGTGCACGGGTTATTT+GGG | 0.252159 | 6_3:+1739216 | Msa0933240:CDS |
| CCATTATTTGAAACAGATTC+TGG | 0.258534 | 6_3:-1739355 | None:intergenic |
| GCCATTCCTTCTTCATCTTC+AGG | 0.266934 | 6_3:+1735839 | Msa0933240:CDS |
| AATACTACCTTTGACCATAT+TGG | 0.291759 | 6_3:+1738517 | Msa0933240:CDS |
| GGCAGTGGTGGCGGCGGTTA+AGG | 0.322085 | 6_3:-1735795 | None:intergenic |
| AATCCAAGGAGTGCTTCTTC+TGG | 0.327589 | 6_3:+1735893 | Msa0933240:CDS |
| GCTCTTGGTTCCTTACTCTA+TGG | 0.329815 | 6_3:-1738246 | None:intergenic |
| GATCCTGAACCTCTTGAAAA+AGG | 0.346940 | 6_3:+1735920 | Msa0933240:CDS |
| GGATATGTTGATAGAATATT+GGG | 0.347459 | 6_3:+1739238 | Msa0933240:CDS |
| GGTATTCAGTACCATGCTTC+TGG | 0.355132 | 6_3:+1739930 | Msa0933240:CDS |
| GGAGTGACTGCTCTGGCAGC+CGG | 0.356065 | 6_3:+1738953 | Msa0933240:CDS |
| GGAGACAAGGCAAGCTGAAT+TGG | 0.367167 | 6_3:+1736188 | Msa0933240:CDS |
| ATTGAATTTAGAAAGACAAT+TGG | 0.391878 | 6_3:-1739860 | None:intergenic |
| AAGTCGAGAAAGGGTGCTTT+TGG | 0.394444 | 6_3:-1739326 | None:intergenic |
| GAGTGACTGCTCTGGCAGCC+GGG | 0.400139 | 6_3:+1738954 | Msa0933240:CDS |
| CTTCAGGAACCGATTCATCT+TGG | 0.405720 | 6_3:+1735855 | Msa0933240:CDS |
| TAATCGAATGAAAGCACAAT+TGG | 0.409012 | 6_3:+1736230 | Msa0933240:CDS |
| CTTATTACGATCTGTTAGAA+TGG | 0.422073 | 6_3:-1738912 | None:intergenic |
| ATGGCGAAAACCACTTTATC+CGG | 0.429316 | 6_3:+1735761 | Msa0933240:CDS |
| ACAGCACTTGCAAAAGCAAA+AGG | 0.438572 | 6_3:+1738400 | Msa0933240:CDS |
| TTGAATTTAGAAAGACAATT+GGG | 0.444062 | 6_3:-1739859 | None:intergenic |
| CAGAGAGTTGGCTTACAAAT+CGG | 0.447484 | 6_3:+1739528 | Msa0933240:CDS |
| TCTGTTTCAAATAATGGAAA+GGG | 0.454708 | 6_3:+1739361 | Msa0933240:CDS |
| CTGGTTTAGCAAGTCGAGAA+AGG | 0.462717 | 6_3:-1739336 | None:intergenic |
| AGAGACGGTGGCAGTGGTGG+CGG | 0.465071 | 6_3:-1735804 | None:intergenic |
| TCGAGAAAACGTGCCAGACC+AGG | 0.465385 | 6_3:-1739302 | None:intergenic |
| AGACCAGGGGTATTTCCCTC+TGG | 0.471013 | 6_3:-1739287 | None:intergenic |
| ATCTCAGATGGCTAAATATG+AGG | 0.478813 | 6_3:+1738098 | Msa0933240:CDS |
| CTAAATCACCCTTCTCAAGT+TGG | 0.479623 | 6_3:-1738468 | None:intergenic |
| AGGATGAGTTGGCAAGGAAG+AGG | 0.479629 | 6_3:+1738118 | Msa0933240:CDS |
| ACCCGCTTTCCAAGATGAAT+CGG | 0.481704 | 6_3:-1735864 | None:intergenic |
| TGCTTCATCATATGCTAAGA+AGG | 0.493427 | 6_3:+1735967 | Msa0933240:CDS |
| AAAATGAGTACCATAGAGTA+AGG | 0.494834 | 6_3:+1738236 | Msa0933240:CDS |
| TTGTCTTCCCTGTTCCTGGA+GGG | 0.498774 | 6_3:-1739498 | None:intergenic |
| GGCTAAATATGAGGATGAGT+TGG | 0.500126 | 6_3:+1738107 | Msa0933240:CDS |
| AGAGGGAAATACCCCTGGTC+TGG | 0.500897 | 6_3:+1739289 | Msa0933240:CDS |
| GACGGTGGCAGTGGTGGCGG+CGG | 0.504656 | 6_3:-1735801 | None:intergenic |
| TGAAAACACAAAATTACATC+AGG | 0.504750 | 6_3:+1739447 | Msa0933240:CDS |
| ACCGATTCATCTTGGAAAGC+GGG | 0.514506 | 6_3:+1735863 | Msa0933240:CDS |
| TGAAGAAGGAATGGCGCCAT+CGG | 0.514941 | 6_3:-1735831 | None:intergenic |
| GCAAGCTGAATTGGCTGCTA+AGG | 0.515586 | 6_3:+1736197 | Msa0933240:CDS |
| ATTTCCCTCTGGAGGACTCT+CGG | 0.515937 | 6_3:-1739276 | None:intergenic |
| TGAGATATTGAAGAAACAAG+AGG | 0.518331 | 6_3:+1736167 | Msa0933240:CDS |
| ATCTGTTTCAAATAATGGAA+AGG | 0.518634 | 6_3:+1739360 | Msa0933240:CDS |
| AATCCAGAAGAAGCACTCCT+TGG | 0.521894 | 6_3:-1735896 | None:intergenic |
| CGATTTGTAAGCCAACTCTC+TGG | 0.521968 | 6_3:-1739527 | None:intergenic |
| TGGTTTAGCAAGTCGAGAAA+GGG | 0.525545 | 6_3:-1739335 | None:intergenic |
| TCTAACAGATCGTAATAAGT+TGG | 0.527875 | 6_3:+1738916 | Msa0933240:CDS |
| GAGGACTCTCGGATCAATGA+TGG | 0.530746 | 6_3:-1739265 | None:intergenic |
| GAAGGTGCACGGGTTATTTG+GGG | 0.534601 | 6_3:+1739217 | Msa0933240:CDS |
| CCTCCAGAGGGAAATACCCC+TGG | 0.539942 | 6_3:+1739284 | Msa0933240:CDS |
| CTAATGTAGGGAAGGTGCAC+GGG | 0.540661 | 6_3:+1739207 | Msa0933240:intron |
| AAGTTGGTCGTAACAGTTGG+TGG | 0.542001 | 6_3:+1738932 | Msa0933240:CDS |
| GGAGAAAGAGACGGTGGCAG+TGG | 0.546025 | 6_3:-1735810 | None:intergenic |
| ACTACCTTTGACCATATTGG+AGG | 0.546392 | 6_3:+1738520 | Msa0933240:CDS |
| TGCAGTTATTAGCTTACAAG+TGG | 0.548430 | 6_3:+1739908 | Msa0933240:CDS |
| GAAAGAGACGGTGGCAGTGG+TGG | 0.550239 | 6_3:-1735807 | None:intergenic |
| GGTTAAGGCTGAGAATAAAC+CGG | 0.551769 | 6_3:-1735780 | None:intergenic |
| TGAGAATAAACCGGATAAAG+TGG | 0.552481 | 6_3:-1735771 | None:intergenic |
| GACAATGGCTGCCAGAGAGT+TGG | 0.552771 | 6_3:+1739516 | Msa0933240:CDS |
| TAGTAAGAGAATTGAGCAGC+TGG | 0.554062 | 6_3:+1739414 | Msa0933240:CDS |
| CCTAATGTAGGGAAGGTGCA+CGG | 0.555109 | 6_3:+1739206 | Msa0933240:intron |
| CAGGAGAAACCAACTTGAGA+AGG | 0.557237 | 6_3:+1738459 | Msa0933240:CDS |
| GCCACCGTCTCTTTCTCCGA+TGG | 0.558928 | 6_3:+1735815 | Msa0933240:CDS |
| TCGGTTCCTGAAGATGAAGA+AGG | 0.559401 | 6_3:-1735845 | None:intergenic |
| ATTGTCTTCCCTGTTCCTGG+AGG | 0.560179 | 6_3:-1739499 | None:intergenic |
| TCCTGAAGATGAAGAAGGAA+TGG | 0.562260 | 6_3:-1735840 | None:intergenic |
| GTTGGCAAGGAAGAGGATGC+AGG | 0.565436 | 6_3:+1738125 | Msa0933240:CDS |
| AGAAGATTCATCAATCAGAC+TGG | 0.565440 | 6_3:+1738282 | Msa0933240:CDS |
| AGTGACTGCTCTGGCAGCCG+GGG | 0.566373 | 6_3:+1738955 | Msa0933240:CDS |
| TCAATTCTCTTACTAAGAGA+AGG | 0.575379 | 6_3:-1739406 | None:intergenic |
| TTTACCTCCAATATGGTCAA+AGG | 0.577286 | 6_3:-1738524 | None:intergenic |
| CAGCACTTGCAAAAGCAAAA+GGG | 0.577360 | 6_3:+1738401 | Msa0933240:CDS |
| AGTTGGTGGAGTGACTGCTC+TGG | 0.577512 | 6_3:+1738946 | Msa0933240:CDS |
| AATAAGTTGGTCGTAACAGT+TGG | 0.580574 | 6_3:+1738929 | Msa0933240:CDS |
| AAAGCAAACTGTAGAGGAGA+AGG | 0.582383 | 6_3:+1738348 | Msa0933240:CDS |
| CGAGAAAACGTGCCAGACCA+GGG | 0.583981 | 6_3:-1739301 | None:intergenic |
| TGAAGAAACAAGAGGAGACA+AGG | 0.599789 | 6_3:+1736175 | Msa0933240:CDS |
| ATACCTTGTTGTGTAGACCC+CGG | 0.606322 | 6_3:-1738972 | None:intergenic |
| AACAGCAATAACCAGAAGCA+TGG | 0.606512 | 6_3:-1739941 | None:intergenic |
| AGGAGAAACCAACTTGAGAA+GGG | 0.608125 | 6_3:+1738460 | Msa0933240:CDS |
| GGCACAAACAAAATCTCAGA+TGG | 0.613066 | 6_3:+1738086 | Msa0933240:CDS |
| AATATGAGGATGAGTTGGCA+AGG | 0.615642 | 6_3:+1738112 | Msa0933240:CDS |
| CAGCCGGGGTCTACACAACA+AGG | 0.619731 | 6_3:+1738969 | Msa0933240:CDS |
| AACCGATTCATCTTGGAAAG+CGG | 0.620166 | 6_3:+1735862 | Msa0933240:CDS |
| GCAGTTATTAGCTTACAAGT+GGG | 0.620509 | 6_3:+1739909 | Msa0933240:CDS |
| AAGCGGGTAACGATAATCCA+AGG | 0.631471 | 6_3:+1735879 | Msa0933240:CDS |
| TTTATGGCCCTCCAGGAACA+GGG | 0.634037 | 6_3:+1739491 | Msa0933240:CDS |
| ACTACGAAAGCAAACTGTAG+AGG | 0.655152 | 6_3:+1738342 | Msa0933240:CDS |
| GGCGCCATCGGAGAAAGAGA+CGG | 0.665134 | 6_3:-1735819 | None:intergenic |
| TCCAGGAACAGGGAAGACAA+TGG | 0.668408 | 6_3:+1739501 | Msa0933240:CDS |
| CCAGGGGTATTTCCCTCTGG+AGG | 0.673340 | 6_3:-1739284 | None:intergenic |
| TGATCCGAGAGTCCTCCAGA+GGG | 0.678628 | 6_3:+1739272 | Msa0933240:CDS |
| TTGATCCGAGAGTCCTCCAG+AGG | 0.688066 | 6_3:+1739271 | Msa0933240:CDS |
| GCCATCGGAGAAAGAGACGG+TGG | 0.694457 | 6_3:-1735816 | None:intergenic |
| GAGAAAACGTGCCAGACCAG+GGG | 0.697208 | 6_3:-1739300 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTATATATATTTT+CGG | + | chr6_3:1737292-1737311 | Msa0933240:intron | 0.0% |
| !! | TACAATAATAAAAATTTGAT+AGG | - | chr6_3:1737739-1737758 | None:intergenic | 10.0% |
| !!! | TATGTTTGATATTTTATTTG+TGG | + | chr6_3:1736116-1736135 | Msa0933240:intron | 15.0% |
| !!! | TTTTGTTTTTGTTTTTTTGA+AGG | + | chr6_3:1736140-1736159 | Msa0933240:intron | 15.0% |
| !! | TAATAACATGCAAATTTATT+TGG | - | chr6_3:1736815-1736834 | None:intergenic | 15.0% |
| !!! | AACATGAAACATATTTTTTT+TGG | - | chr6_3:1739610-1739629 | None:intergenic | 15.0% |
| !! | TATAAAAAATCTGAAAAATG+AGG | - | chr6_3:1739741-1739760 | None:intergenic | 15.0% |
| !!! | TATCATCTGAGTTTTAATTA+CGG | - | chr6_3:1736687-1736706 | None:intergenic | 20.0% |
| !!! | TTATTATACACATGTTTTCT+TGG | + | chr6_3:1736887-1736906 | Msa0933240:intron | 20.0% |
| !!! | TATTATACACATGTTTTCTT+GGG | + | chr6_3:1736888-1736907 | Msa0933240:intron | 20.0% |
| !!! | CTATTTTCTCAAATTATCAA+CGG | - | chr6_3:1737086-1737105 | None:intergenic | 20.0% |
| !!! | TATATTTTCAGACAATGAAA+TGG | - | chr6_3:1737211-1737230 | None:intergenic | 20.0% |
| !!! | TATATATTTTCGGTATTAGA+TGG | + | chr6_3:1737302-1737321 | Msa0933240:intron | 20.0% |
| !!! | ATTTCTGTGTAAGTTTTTTT+TGG | + | chr6_3:1737498-1737517 | Msa0933240:intron | 20.0% |
| !! | AACAATAATAACAATGTTTC+AGG | + | chr6_3:1737693-1737712 | Msa0933240:intron | 20.0% |
| !! | ACAATAATAACAATGTTTCA+GGG | + | chr6_3:1737694-1737713 | Msa0933240:intron | 20.0% |
| !! | ATTAAACTGATAGAACATTA+TGG | - | chr6_3:1737837-1737856 | None:intergenic | 20.0% |
| !!! | ATTAAACCTTTTGAAACTTT+GGG | + | chr6_3:1738154-1738173 | Msa0933240:intron | 20.0% |
| !! | TAAAAAATTTACCTCCAATA+TGG | - | chr6_3:1738534-1738553 | None:intergenic | 20.0% |
| !!! | ATAATTGAGTTTTCAGATTT+GGG | - | chr6_3:1738871-1738890 | None:intergenic | 20.0% |
| !! | TATAAATTGTCCATAAAGTT+TGG | + | chr6_3:1738992-1739011 | Msa0933240:intron | 20.0% |
| !!! | TTGTATATTCTCTAAAAATG+GGG | - | chr6_3:1739082-1739101 | None:intergenic | 20.0% |
| !!! | GTTGTATATTCTCTAAAAAT+GGG | - | chr6_3:1739083-1739102 | None:intergenic | 20.0% |
| !!! | AGTTGTATATTCTCTAAAAA+TGG | - | chr6_3:1739084-1739103 | None:intergenic | 20.0% |
| !! | AATTAGAACAAGAAGATAAA+TGG | - | chr6_3:1739571-1739590 | None:intergenic | 20.0% |
| !! | ATATTCCTCTTTATAATTTC+TGG | + | chr6_3:1739760-1739779 | Msa0933240:intron | 20.0% |
| !!! | TCTAAAATCATCTTTCTTAA+AGG | + | chr6_3:1739820-1739839 | Msa0933240:CDS | 20.0% |
| !! | TTGAATTTAGAAAGACAATT+GGG | - | chr6_3:1739862-1739881 | None:intergenic | 20.0% |
| !! | ATTGAATTTAGAAAGACAAT+TGG | - | chr6_3:1739863-1739882 | None:intergenic | 20.0% |
| !! | AACATTTTTGTATGCGAAAT+AGG | + | chr6_3:1736356-1736375 | Msa0933240:intron | 25.0% |
| !! | TCTGACAACTTTCTTTTTAT+TGG | + | chr6_3:1736417-1736436 | Msa0933240:intron | 25.0% |
| !!! | TCAATTTTACAGCCATTTTT+CGG | - | chr6_3:1736501-1736520 | None:intergenic | 25.0% |
| ! | TAGTAGTAATTGCATGTTAT+CGG | + | chr6_3:1736659-1736678 | Msa0933240:intron | 25.0% |
| !!! | ATCATCTGAGTTTTAATTAC+GGG | - | chr6_3:1736686-1736705 | None:intergenic | 25.0% |
| ! | TGATTAAATGTAACATCTGT+TGG | + | chr6_3:1737109-1737128 | Msa0933240:intron | 25.0% |
| ! | TCATTCATGATAACTATTCA+AGG | - | chr6_3:1737343-1737362 | None:intergenic | 25.0% |
| ! | GAATAGTTATCATGAATGAA+TGG | + | chr6_3:1737344-1737363 | Msa0933240:intron | 25.0% |
| ! | CAATAATAACAATGTTTCAG+GGG | + | chr6_3:1737695-1737714 | Msa0933240:intron | 25.0% |
| ! | TAAAAATTTGATAGGCAGTA+TGG | - | chr6_3:1737731-1737750 | None:intergenic | 25.0% |
| !! | TTTTATTGCAAGTACAAGTA+TGG | + | chr6_3:1737908-1737927 | Msa0933240:intron | 25.0% |
| ! | CACATATCTTCAATTGTTTA+AGG | - | chr6_3:1737934-1737953 | None:intergenic | 25.0% |
| !!! | CATTAAACCTTTTGAAACTT+TGG | + | chr6_3:1738153-1738172 | Msa0933240:intron | 25.0% |
| !! | ATTCTCACATTTTTATTGTC+AGG | + | chr6_3:1738210-1738229 | Msa0933240:intron | 25.0% |
| ! | CATAATATATAGTTCGTATC+TGG | - | chr6_3:1738557-1738576 | None:intergenic | 25.0% |
| !!! | ACTCAATCAATATTTTTGCT+TGG | + | chr6_3:1738818-1738837 | Msa0933240:intron | 25.0% |
| !! | TAATTGAGTTTTCAGATTTG+GGG | - | chr6_3:1738870-1738889 | None:intergenic | 25.0% |
| !! | GATAATTGAGTTTTCAGATT+TGG | - | chr6_3:1738872-1738891 | None:intergenic | 25.0% |
| !! | AAAACTCAATTATCTTTTGC+AGG | + | chr6_3:1738878-1738897 | Msa0933240:intron | 25.0% |
| !! | AAACTCAATTATCTTTTGCA+GGG | + | chr6_3:1738879-1738898 | Msa0933240:intron | 25.0% |
| !! | GGATATGTTGATAGAATATT+GGG | + | chr6_3:1739238-1739257 | Msa0933240:CDS | 25.0% |
| !! | ATCTGTTTCAAATAATGGAA+AGG | + | chr6_3:1739360-1739379 | Msa0933240:CDS | 25.0% |
| !! | TCTGTTTCAAATAATGGAAA+GGG | + | chr6_3:1739361-1739380 | Msa0933240:CDS | 25.0% |
| ! | TGAAAACACAAAATTACATC+AGG | + | chr6_3:1739447-1739466 | Msa0933240:CDS | 25.0% |
| ! | TGATCACTTCTACTTAATAT+AGG | - | chr6_3:1739698-1739717 | None:intergenic | 25.0% |
| TGAGATATTGAAGAAACAAG+AGG | + | chr6_3:1736167-1736186 | Msa0933240:CDS | 30.0% | |
| ! | TAATCGAATGAAAGCACAAT+TGG | + | chr6_3:1736230-1736249 | Msa0933240:CDS | 30.0% |
| ACTGACAACATAAGAATTTC+TGG | - | chr6_3:1736272-1736291 | None:intergenic | 30.0% | |
| CATAAGTAGAACTCAAAAGA+TGG | + | chr6_3:1736534-1736553 | Msa0933240:intron | 30.0% | |
| !!! | TATGTAGTTTTGTAGCTTGA+AGG | + | chr6_3:1736993-1737012 | Msa0933240:intron | 30.0% |
| ! | TATTTTCGGTATTAGATGGA+TGG | + | chr6_3:1737306-1737325 | Msa0933240:intron | 30.0% |
| TTTACATGAGTCTGTATCAT+GGG | + | chr6_3:1737380-1737399 | Msa0933240:intron | 30.0% | |
| ! | TCGTTTGAATTTTATCCCAT+TGG | + | chr6_3:1737430-1737449 | Msa0933240:intron | 30.0% |
| ! | CGTTTGAATTTTATCCCATT+GGG | + | chr6_3:1737431-1737450 | Msa0933240:intron | 30.0% |
| ! | GTTTGAATTTTATCCCATTG+GGG | + | chr6_3:1737432-1737451 | Msa0933240:intron | 30.0% |
| GACAGTAATGTCCTAATTAT+GGG | - | chr6_3:1737474-1737493 | None:intergenic | 30.0% | |
| AGACAGTAATGTCCTAATTA+TGG | - | chr6_3:1737475-1737494 | None:intergenic | 30.0% | |
| TAATTAGGACATTACTGTCT+AGG | + | chr6_3:1737475-1737494 | Msa0933240:intron | 30.0% | |
| AAGTCCAGAGTTTGAAAATA+CGG | - | chr6_3:1737538-1737557 | None:intergenic | 30.0% | |
| ! | AACAACTTCAAAGTATTCGT+AGG | + | chr6_3:1737637-1737656 | Msa0933240:intron | 30.0% |
| ATTATGGCGTAATTTGATCA+AGG | - | chr6_3:1737821-1737840 | None:intergenic | 30.0% | |
| ! | TCTGTGTGTATTTTGTGTTT+TGG | + | chr6_3:1737981-1738000 | Msa0933240:intron | 30.0% |
| ATATGACGAAGAAAAAAAGC+TGG | + | chr6_3:1738053-1738072 | Msa0933240:CDS | 30.0% | |
| CAAAAACCCAAAGTTTCAAA+AGG | - | chr6_3:1738163-1738182 | None:intergenic | 30.0% | |
| AAAATGAGTACCATAGAGTA+AGG | + | chr6_3:1738236-1738255 | Msa0933240:CDS | 30.0% | |
| GTGATTTAGATCGAGAAAAA+TGG | + | chr6_3:1738482-1738501 | Msa0933240:CDS | 30.0% | |
| AATACTACCTTTGACCATAT+TGG | + | chr6_3:1738517-1738536 | Msa0933240:CDS | 30.0% | |
| !! | CATCGTGAATTCGTTTTTAA+AGG | - | chr6_3:1738639-1738658 | None:intergenic | 30.0% |
| ! | TCAGCATAATTGTAGTTTGT+TGG | + | chr6_3:1738717-1738736 | Msa0933240:intron | 30.0% |
| !! | GTGAAGCATTGTATCTTAAT+TGG | + | chr6_3:1738788-1738807 | Msa0933240:intron | 30.0% |
| !! | AATCAATATTTTTGCTTGGC+TGG | + | chr6_3:1738822-1738841 | Msa0933240:intron | 30.0% |
| !! | ATCAATATTTTTGCTTGGCT+GGG | + | chr6_3:1738823-1738842 | Msa0933240:intron | 30.0% |
| ! | AACTCAATTATCTTTTGCAG+GGG | + | chr6_3:1738880-1738899 | Msa0933240:intron | 30.0% |
| CTTATTACGATCTGTTAGAA+TGG | - | chr6_3:1738915-1738934 | None:intergenic | 30.0% | |
| TCTAACAGATCGTAATAAGT+TGG | + | chr6_3:1738916-1738935 | Msa0933240:CDS | 30.0% | |
| GAAATAGTCTGATAGATAGA+GGG | - | chr6_3:1739118-1739137 | None:intergenic | 30.0% | |
| AGAAATAGTCTGATAGATAG+AGG | - | chr6_3:1739119-1739138 | None:intergenic | 30.0% | |
| ATTCAGATTGTACCTAATGT+AGG | + | chr6_3:1739194-1739213 | Msa0933240:intron | 30.0% | |
| TTCAGATTGTACCTAATGTA+GGG | + | chr6_3:1739195-1739214 | Msa0933240:intron | 30.0% | |
| ! | GGGATATGTTGATAGAATAT+TGG | + | chr6_3:1739237-1739256 | Msa0933240:CDS | 30.0% |
| ! | CCATTATTTGAAACAGATTC+TGG | - | chr6_3:1739358-1739377 | None:intergenic | 30.0% |
| CCAGAATCTGTTTCAAATAA+TGG | + | chr6_3:1739355-1739374 | Msa0933240:CDS | 30.0% | |
| !! | TCAAATAATGGAAAGGGTTT+TGG | + | chr6_3:1739367-1739386 | Msa0933240:CDS | 30.0% |
| TCAATTCTCTTACTAAGAGA+AGG | - | chr6_3:1739409-1739428 | None:intergenic | 30.0% | |
| ! | TAAAAAAGCACGTTTCTGAA+TGG | - | chr6_3:1739475-1739494 | None:intergenic | 30.0% |
| !!! | TTCAGAAACGTGCTTTTTTA+TGG | + | chr6_3:1739475-1739494 | Msa0933240:CDS | 30.0% |
| GTAGAAGTGATCAACATATT+AGG | + | chr6_3:1739705-1739724 | Msa0933240:intron | 30.0% | |
| AATTCCACAGAAAAAGAACT+TGG | - | chr6_3:1739887-1739906 | None:intergenic | 30.0% | |
| TGAGAATAAACCGGATAAAG+TGG | - | chr6_3:1735774-1735793 | None:intergenic | 35.0% | |
| !!! | GCTTTAAGACCTTTTTCAAG+AGG | - | chr6_3:1735932-1735951 | None:intergenic | 35.0% |
| TGCTTCATCATATGCTAAGA+AGG | + | chr6_3:1735967-1735986 | Msa0933240:CDS | 35.0% | |
| AGTTTCTCAGATTATAACCG+AGG | - | chr6_3:1736025-1736044 | None:intergenic | 35.0% | |
| AGAGACAGTTATCCGAAAAA+TGG | + | chr6_3:1736486-1736505 | Msa0933240:intron | 35.0% | |
| GAGACGATTAATATGATCAG+TGG | + | chr6_3:1736717-1736736 | Msa0933240:intron | 35.0% | |
| GCATTAGCACTTCATATTGA+AGG | - | chr6_3:1737170-1737189 | None:intergenic | 35.0% | |
| CTTTACATGAGTCTGTATCA+TGG | + | chr6_3:1737379-1737398 | Msa0933240:intron | 35.0% | |
| TTACATGAGTCTGTATCATG+GGG | + | chr6_3:1737381-1737400 | Msa0933240:intron | 35.0% | |
| ! | ATGTCCGTATTTTCAAACTC+TGG | + | chr6_3:1737531-1737550 | Msa0933240:intron | 35.0% |
| AACAGAAGACTAACTCTATC+TGG | + | chr6_3:1737660-1737679 | Msa0933240:intron | 35.0% | |
| ATTTGATAGGCAGTATGGAA+AGG | - | chr6_3:1737726-1737745 | None:intergenic | 35.0% | |
| ACACAAAATACACACAGAAC+AGG | - | chr6_3:1737979-1737998 | None:intergenic | 35.0% | |
| AAGAAAACCAACTGATAAGC+TGG | - | chr6_3:1738011-1738030 | None:intergenic | 35.0% | |
| !!! | AGCTTATCAGTTGGTTTTCT+TGG | + | chr6_3:1738010-1738029 | Msa0933240:intron | 35.0% |
| TTTCTTGGCAGGAAAAACAA+AGG | + | chr6_3:1738025-1738044 | Msa0933240:intron | 35.0% | |
| !! | TTTTGTTTGTGCCTGATGTT+GGG | - | chr6_3:1738079-1738098 | None:intergenic | 35.0% |
| !! | ATTTTGTTTGTGCCTGATGT+TGG | - | chr6_3:1738080-1738099 | None:intergenic | 35.0% |
| ATCTCAGATGGCTAAATATG+AGG | + | chr6_3:1738098-1738117 | Msa0933240:CDS | 35.0% | |
| ! | CTTGCAATTTTACAAGCTCT+TGG | - | chr6_3:1738264-1738283 | None:intergenic | 35.0% |
| AGAAGATTCATCAATCAGAC+TGG | + | chr6_3:1738282-1738301 | Msa0933240:CDS | 35.0% | |
| TTTACCTCCAATATGGTCAA+AGG | - | chr6_3:1738527-1738546 | None:intergenic | 35.0% | |
| ! | CGAATTCACGATGATTTTTG+TGG | + | chr6_3:1738646-1738665 | Msa0933240:intron | 35.0% |
| ! | ACTCAATTATCTTTTGCAGG+GGG | + | chr6_3:1738881-1738900 | Msa0933240:intron | 35.0% |
| !! | AATAAGTTGGTCGTAACAGT+TGG | + | chr6_3:1738929-1738948 | Msa0933240:CDS | 35.0% |
| GTAGCTCATTCCAAACTTTA+TGG | - | chr6_3:1739005-1739024 | None:intergenic | 35.0% | |
| !!! | GGTTGAGTGTTATTTTTGCA+TGG | + | chr6_3:1739052-1739071 | Msa0933240:intron | 35.0% |
| TTTGACACGTTGACAAAACA+AGG | - | chr6_3:1739638-1739657 | None:intergenic | 35.0% | |
| TGTCAACGTGTCAAATAAGT+AGG | + | chr6_3:1739643-1739662 | Msa0933240:intron | 35.0% | |
| GTCAACGTGTCAAATAAGTA+GGG | + | chr6_3:1739644-1739663 | Msa0933240:intron | 35.0% | |
| GTGTCAAATAAGTAGGGAAT+TGG | + | chr6_3:1739650-1739669 | Msa0933240:intron | 35.0% | |
| GTCAGCCAGAAATTATAAAG+AGG | - | chr6_3:1739768-1739787 | None:intergenic | 35.0% | |
| ! | AATGCCAAGTTCTTTTTCTG+TGG | + | chr6_3:1739880-1739899 | Msa0933240:CDS | 35.0% |
| ! | TGCAGTTATTAGCTTACAAG+TGG | + | chr6_3:1739908-1739927 | Msa0933240:CDS | 35.0% |
| ! | GCAGTTATTAGCTTACAAGT+GGG | + | chr6_3:1739909-1739928 | Msa0933240:CDS | 35.0% |
| ATGGCGAAAACCACTTTATC+CGG | + | chr6_3:1735761-1735780 | Msa0933240:CDS | 40.0% | |
| GGTTAAGGCTGAGAATAAAC+CGG | - | chr6_3:1735783-1735802 | None:intergenic | 40.0% | |
| TCCTGAAGATGAAGAAGGAA+TGG | - | chr6_3:1735843-1735862 | None:intergenic | 40.0% | |
| ! | AACCGATTCATCTTGGAAAG+CGG | + | chr6_3:1735862-1735881 | Msa0933240:CDS | 40.0% |
| GATCCTGAACCTCTTGAAAA+AGG | + | chr6_3:1735920-1735939 | Msa0933240:CDS | 40.0% | |
| !!! | AGACCTTTTTCAAGAGGTTC+AGG | - | chr6_3:1735926-1735945 | None:intergenic | 40.0% |
| TGAAGAAACAAGAGGAGACA+AGG | + | chr6_3:1736175-1736194 | Msa0933240:CDS | 40.0% | |
| CGTAAGTAGAGCTCAAATTG+CGG | + | chr6_3:1736294-1736313 | Msa0933240:intron | 40.0% | |
| TGCAGAGACAATTGATATGC+TGG | + | chr6_3:1736565-1736584 | Msa0933240:intron | 40.0% | |
| TTGTAGCTTGAAGGTTTGTG+TGG | + | chr6_3:1737002-1737021 | Msa0933240:intron | 40.0% | |
| TGTAGCTTGAAGGTTTGTGT+GGG | + | chr6_3:1737003-1737022 | Msa0933240:intron | 40.0% | |
| ! | CTTCATATTGAAGGTGTGTC+TGG | - | chr6_3:1737161-1737180 | None:intergenic | 40.0% |
| GCGTTTCATCTCCCATAATT+AGG | + | chr6_3:1737460-1737479 | Msa0933240:intron | 40.0% | |
| TCCTTAATTCCTTCAAACCC+TGG | + | chr6_3:1737563-1737582 | Msa0933240:intron | 40.0% | |
| TCCAGGGTTTGAAGGAATTA+AGG | - | chr6_3:1737567-1737586 | None:intergenic | 40.0% | |
| ! | TATGAAGCACTTACAGTCCA+GGG | - | chr6_3:1737583-1737602 | None:intergenic | 40.0% |
| ! | TGGTTTTCCAGCTTATCAGT+TGG | + | chr6_3:1738001-1738020 | Msa0933240:intron | 40.0% |
| !!! | TATCAGTTGGTTTTCTTGGC+AGG | + | chr6_3:1738014-1738033 | Msa0933240:intron | 40.0% |
| GGCACAAACAAAATCTCAGA+TGG | + | chr6_3:1738086-1738105 | Msa0933240:CDS | 40.0% | |
| GGCTAAATATGAGGATGAGT+TGG | + | chr6_3:1738107-1738126 | Msa0933240:CDS | 40.0% | |
| ! | AATATGAGGATGAGTTGGCA+AGG | + | chr6_3:1738112-1738131 | Msa0933240:CDS | 40.0% |
| ACTACGAAAGCAAACTGTAG+AGG | + | chr6_3:1738342-1738361 | Msa0933240:CDS | 40.0% | |
| AAAGCAAACTGTAGAGGAGA+AGG | + | chr6_3:1738348-1738367 | Msa0933240:CDS | 40.0% | |
| ACAGCACTTGCAAAAGCAAA+AGG | + | chr6_3:1738400-1738419 | Msa0933240:CDS | 40.0% | |
| CAGCACTTGCAAAAGCAAAA+GGG | + | chr6_3:1738401-1738420 | Msa0933240:CDS | 40.0% | |
| CGAAAAACGAAGAGATTGAC+AGG | + | chr6_3:1738440-1738459 | Msa0933240:CDS | 40.0% | |
| AGGAGAAACCAACTTGAGAA+GGG | + | chr6_3:1738460-1738479 | Msa0933240:CDS | 40.0% | |
| CTAAATCACCCTTCTCAAGT+TGG | - | chr6_3:1738471-1738490 | None:intergenic | 40.0% | |
| ACTACCTTTGACCATATTGG+AGG | + | chr6_3:1738520-1738539 | Msa0933240:CDS | 40.0% | |
| ! | GAGTTTTCAGATTTGGGGAT+TGG | - | chr6_3:1738865-1738884 | None:intergenic | 40.0% |
| GGAATGAGCTACTATAAACG+AGG | + | chr6_3:1739013-1739032 | Msa0933240:intron | 40.0% | |
| TGAGCTACTATAAACGAGGA+AGG | + | chr6_3:1739017-1739036 | Msa0933240:intron | 40.0% | |
| CTACTATAAACGAGGAAGGA+GGG | + | chr6_3:1739021-1739040 | Msa0933240:intron | 40.0% | |
| GATTGTACCTAATGTAGGGA+AGG | + | chr6_3:1739199-1739218 | Msa0933240:intron | 40.0% | |
| TGGTTTAGCAAGTCGAGAAA+GGG | - | chr6_3:1739338-1739357 | None:intergenic | 40.0% | |
| TAGTAAGAGAATTGAGCAGC+TGG | + | chr6_3:1739414-1739433 | Msa0933240:CDS | 40.0% | |
| ! | CAGAGAGTTGGCTTACAAAT+CGG | + | chr6_3:1739528-1739547 | Msa0933240:CDS | 40.0% |
| !! | TAATTTCTGGCTGACAGTCT+AGG | + | chr6_3:1739773-1739792 | Msa0933240:intron | 40.0% |
| !! | AATTTCTGGCTGACAGTCTA+GGG | + | chr6_3:1739774-1739793 | Msa0933240:intron | 40.0% |
| AACAGCAATAACCAGAAGCA+TGG | - | chr6_3:1739944-1739963 | None:intergenic | 40.0% | |
| GCCATTCCTTCTTCATCTTC+AGG | + | chr6_3:1735839-1735858 | Msa0933240:CDS | 45.0% | |
| TCGGTTCCTGAAGATGAAGA+AGG | - | chr6_3:1735848-1735867 | None:intergenic | 45.0% | |
| ! | CTTCAGGAACCGATTCATCT+TGG | + | chr6_3:1735855-1735874 | Msa0933240:CDS | 45.0% |
| ! | ACCGATTCATCTTGGAAAGC+GGG | + | chr6_3:1735863-1735882 | Msa0933240:CDS | 45.0% |
| ACCCGCTTTCCAAGATGAAT+CGG | - | chr6_3:1735867-1735886 | None:intergenic | 45.0% | |
| AAGCGGGTAACGATAATCCA+AGG | + | chr6_3:1735879-1735898 | Msa0933240:CDS | 45.0% | |
| !! | AATCCAAGGAGTGCTTCTTC+TGG | + | chr6_3:1735893-1735912 | Msa0933240:CDS | 45.0% |
| !! | AATCCAGAAGAAGCACTCCT+TGG | - | chr6_3:1735899-1735918 | None:intergenic | 45.0% |
| !! | TGCTAAGAAGGTACTGACAC+CGG | + | chr6_3:1735979-1735998 | Msa0933240:intron | 45.0% |
| CGGAGACATTTGATATGTCG+AGG | + | chr6_3:1736314-1736333 | Msa0933240:intron | 45.0% | |
| AGTAGTGTGCGTGTGAGTTT+CGG | + | chr6_3:1736765-1736784 | Msa0933240:intron | 45.0% | |
| ! | TGTGGGTGTCTGACATGTTT+TGG | + | chr6_3:1737020-1737039 | Msa0933240:intron | 45.0% |
| ! | GGTGTATGCTTTTCTGTGTC+GGG | - | chr6_3:1737065-1737084 | None:intergenic | 45.0% |
| ! | CGGTGTATGCTTTTCTGTGT+CGG | - | chr6_3:1737066-1737085 | None:intergenic | 45.0% |
| TTTCCTCAGCGTGTTGAAGA+CGG | + | chr6_3:1737251-1737270 | Msa0933240:intron | 45.0% | |
| TGAAACGCATACACCCCAAT+GGG | - | chr6_3:1737448-1737467 | None:intergenic | 45.0% | |
| ATGAAACGCATACACCCCAA+TGG | - | chr6_3:1737449-1737468 | None:intergenic | 45.0% | |
| ACTTACAGTCCAGGGTTTGA+AGG | - | chr6_3:1737575-1737594 | None:intergenic | 45.0% | |
| ! | CTATGAAGCACTTACAGTCC+AGG | - | chr6_3:1737584-1737603 | None:intergenic | 45.0% |
| GTAAGTGCTTCATAGCAGAC+AGG | + | chr6_3:1737589-1737608 | Msa0933240:intron | 45.0% | |
| ! | CAAGCCTTTTCCCACTAAGT+GGG | + | chr6_3:1737787-1737806 | Msa0933240:intron | 45.0% |
| ! | AAGCCTTTTCCCACTAAGTG+GGG | + | chr6_3:1737788-1737807 | Msa0933240:intron | 45.0% |
| AAAAAAGCTGGCCCAACATC+AGG | + | chr6_3:1738065-1738084 | Msa0933240:CDS | 45.0% | |
| GCTCTTGGTTCCTTACTCTA+TGG | - | chr6_3:1738249-1738268 | None:intergenic | 45.0% | |
| CAGGAGAAACCAACTTGAGA+AGG | + | chr6_3:1738459-1738478 | Msa0933240:CDS | 45.0% | |
| ! | TTCAGATTTGGGGATTGGTG+TGG | - | chr6_3:1738860-1738879 | None:intergenic | 45.0% |
| ! | AAGTTGGTCGTAACAGTTGG+TGG | + | chr6_3:1738932-1738951 | Msa0933240:CDS | 45.0% |
| ! | ATACCTTGTTGTGTAGACCC+CGG | - | chr6_3:1738975-1738994 | None:intergenic | 45.0% |
| GCTACTATAAACGAGGAAGG+AGG | + | chr6_3:1739020-1739039 | Msa0933240:intron | 45.0% | |
| CGAGGAAGGAGGGAAAAAAT+TGG | + | chr6_3:1739031-1739050 | Msa0933240:intron | 45.0% | |
| !!! | AAGTCGAGAAAGGGTGCTTT+TGG | - | chr6_3:1739329-1739348 | None:intergenic | 45.0% |
| CTGGTTTAGCAAGTCGAGAA+AGG | - | chr6_3:1739339-1739358 | None:intergenic | 45.0% | |
| CGATTTGTAAGCCAACTCTC+TGG | - | chr6_3:1739530-1739549 | None:intergenic | 45.0% | |
| GGTATTCAGTACCATGCTTC+TGG | + | chr6_3:1739930-1739949 | Msa0933240:CDS | 45.0% | |
| TGAAGAAGGAATGGCGCCAT+CGG | - | chr6_3:1735834-1735853 | None:intergenic | 50.0% | |
| AGACATGTCAGTGTCGTGTC+CGG | - | chr6_3:1736001-1736020 | None:intergenic | 50.0% | |
| GGAGACAAGGCAAGCTGAAT+TGG | + | chr6_3:1736188-1736207 | Msa0933240:CDS | 50.0% | |
| GCAAGCTGAATTGGCTGCTA+AGG | + | chr6_3:1736197-1736216 | Msa0933240:CDS | 50.0% | |
| TGTCCGACTCATGCCATTGT+CGG | + | chr6_3:1737132-1737151 | Msa0933240:intron | 50.0% | |
| TGTCCGACAATGGCATGAGT+CGG | - | chr6_3:1737138-1737157 | None:intergenic | 50.0% | |
| TTCCTCAGCGTGTTGAAGAC+GGG | + | chr6_3:1737252-1737271 | Msa0933240:intron | 50.0% | |
| CCACTTAGTGGGAAAAGGCT+TGG | - | chr6_3:1737789-1737808 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTTTCCCACTAAG+TGG | + | chr6_3:1737786-1737805 | Msa0933240:intron | 50.0% |
| CAACCCCACTTAGTGGGAAA+AGG | - | chr6_3:1737794-1737813 | None:intergenic | 50.0% | |
| ! | CTTTTCCCACTAAGTGGGGT+TGG | + | chr6_3:1737792-1737811 | Msa0933240:intron | 50.0% |
| ! | AGGATGAGTTGGCAAGGAAG+AGG | + | chr6_3:1738118-1738137 | Msa0933240:CDS | 50.0% |
| ! | CCTAATGTAGGGAAGGTGCA+CGG | + | chr6_3:1739206-1739225 | Msa0933240:intron | 50.0% |
| ! | CTAATGTAGGGAAGGTGCAC+GGG | + | chr6_3:1739207-1739226 | Msa0933240:intron | 50.0% |
| ! | GGAAGGTGCACGGGTTATTT+GGG | + | chr6_3:1739216-1739235 | Msa0933240:CDS | 50.0% |
| ! | GAAGGTGCACGGGTTATTTG+GGG | + | chr6_3:1739217-1739236 | Msa0933240:CDS | 50.0% |
| GAGGACTCTCGGATCAATGA+TGG | - | chr6_3:1739268-1739287 | None:intergenic | 50.0% | |
| ! | ATTTCCCTCTGGAGGACTCT+CGG | - | chr6_3:1739279-1739298 | None:intergenic | 50.0% |
| !!! | GTGCTTTTTTATGGCCCTCC+AGG | + | chr6_3:1739484-1739503 | Msa0933240:CDS | 50.0% |
| ! | TTTTATGGCCCTCCAGGAAC+AGG | + | chr6_3:1739490-1739509 | Msa0933240:CDS | 50.0% |
| TTTATGGCCCTCCAGGAACA+GGG | + | chr6_3:1739491-1739510 | Msa0933240:CDS | 50.0% | |
| TTGTCTTCCCTGTTCCTGGA+GGG | - | chr6_3:1739501-1739520 | None:intergenic | 50.0% | |
| ATTGTCTTCCCTGTTCCTGG+AGG | - | chr6_3:1739502-1739521 | None:intergenic | 50.0% | |
| TCCAGGAACAGGGAAGACAA+TGG | + | chr6_3:1739501-1739520 | Msa0933240:CDS | 50.0% | |
| CGACACTGACATGTCTGCCT+CGG | + | chr6_3:1736005-1736024 | Msa0933240:intron | 55.0% | |
| TGCGTGTGAGTTTCGGCCTT+CGG | + | chr6_3:1736772-1736791 | Msa0933240:intron | 55.0% | |
| TTCAAAGAGCCTAGCCCCGA+AGG | - | chr6_3:1736791-1736810 | None:intergenic | 55.0% | |
| GTGTGTCTGGTGTCCGACAA+TGG | - | chr6_3:1737148-1737167 | None:intergenic | 55.0% | |
| TCCTCAGCGTGTTGAAGACG+GGG | + | chr6_3:1737253-1737272 | Msa0933240:intron | 55.0% | |
| GGTAGCCAACCCCACTTAGT+GGG | - | chr6_3:1737800-1737819 | None:intergenic | 55.0% | |
| AGGTAGCCAACCCCACTTAG+TGG | - | chr6_3:1737801-1737820 | None:intergenic | 55.0% | |
| GTTGGCAAGGAAGAGGATGC+AGG | + | chr6_3:1738125-1738144 | Msa0933240:CDS | 55.0% | |
| !! | AGTTGGTGGAGTGACTGCTC+TGG | + | chr6_3:1738946-1738965 | Msa0933240:CDS | 55.0% |
| CCGTGCACCTTCCCTACATT+AGG | - | chr6_3:1739209-1739228 | None:intergenic | 55.0% | |
| ! | GGGAAGGTGCACGGGTTATT+TGG | + | chr6_3:1739215-1739234 | Msa0933240:intron | 55.0% |
| TTGATCCGAGAGTCCTCCAG+AGG | + | chr6_3:1739271-1739290 | Msa0933240:CDS | 55.0% | |
| TGATCCGAGAGTCCTCCAGA+GGG | + | chr6_3:1739272-1739291 | Msa0933240:CDS | 55.0% | |
| !! | AGACCAGGGGTATTTCCCTC+TGG | - | chr6_3:1739290-1739309 | None:intergenic | 55.0% |
| AGAGGGAAATACCCCTGGTC+TGG | + | chr6_3:1739289-1739308 | Msa0933240:CDS | 55.0% | |
| GAGAAAACGTGCCAGACCAG+GGG | - | chr6_3:1739303-1739322 | None:intergenic | 55.0% | |
| CGAGAAAACGTGCCAGACCA+GGG | - | chr6_3:1739304-1739323 | None:intergenic | 55.0% | |
| TCGAGAAAACGTGCCAGACC+AGG | - | chr6_3:1739305-1739324 | None:intergenic | 55.0% | |
| GCCATTGTCTTCCCTGTTCC+TGG | - | chr6_3:1739505-1739524 | None:intergenic | 55.0% | |
| GACAATGGCTGCCAGAGAGT+TGG | + | chr6_3:1739516-1739535 | Msa0933240:CDS | 55.0% | |
| GAAAGAGACGGTGGCAGTGG+TGG | - | chr6_3:1735810-1735829 | None:intergenic | 60.0% | |
| GGAGAAAGAGACGGTGGCAG+TGG | - | chr6_3:1735813-1735832 | None:intergenic | 60.0% | |
| GCCACCGTCTCTTTCTCCGA+TGG | + | chr6_3:1735815-1735834 | Msa0933240:CDS | 60.0% | |
| GCCATCGGAGAAAGAGACGG+TGG | - | chr6_3:1735819-1735838 | None:intergenic | 60.0% | |
| GGCGCCATCGGAGAAAGAGA+CGG | - | chr6_3:1735822-1735841 | None:intergenic | 60.0% | |
| GCGTGTGAGTTTCGGCCTTC+GGG | + | chr6_3:1736773-1736792 | Msa0933240:intron | 60.0% | |
| CGTGTGAGTTTCGGCCTTCG+GGG | + | chr6_3:1736774-1736793 | Msa0933240:intron | 60.0% | |
| CAGCCGGGGTCTACACAACA+AGG | + | chr6_3:1738969-1738988 | Msa0933240:CDS | 60.0% | |
| !! | CCAGGGGTATTTCCCTCTGG+AGG | - | chr6_3:1739287-1739306 | None:intergenic | 60.0% |
| CCTCCAGAGGGAAATACCCC+TGG | + | chr6_3:1739284-1739303 | Msa0933240:CDS | 60.0% | |
| AGAGACGGTGGCAGTGGTGG+CGG | - | chr6_3:1735807-1735826 | None:intergenic | 65.0% | |
| GAGTTTCGGCCTTCGGGGCT+AGG | + | chr6_3:1736779-1736798 | Msa0933240:intron | 65.0% | |
| GCCCCGTCTTCAACACGCTG+AGG | - | chr6_3:1737257-1737276 | None:intergenic | 65.0% | |
| GGAGTGACTGCTCTGGCAGC+CGG | + | chr6_3:1738953-1738972 | Msa0933240:CDS | 65.0% | |
| GAGTGACTGCTCTGGCAGCC+GGG | + | chr6_3:1738954-1738973 | Msa0933240:CDS | 65.0% | |
| AGTGACTGCTCTGGCAGCCG+GGG | + | chr6_3:1738955-1738974 | Msa0933240:CDS | 65.0% | |
| !! | GGCAGTGGTGGCGGCGGTTA+AGG | - | chr6_3:1735798-1735817 | None:intergenic | 70.0% |
| !! | GACGGTGGCAGTGGTGGCGG+CGG | - | chr6_3:1735804-1735823 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 1735761 | 1739969 | 1735761 | ID=Msa0933240;Name=Msa0933240 |
| chr6_3 | mRNA | 1735761 | 1739969 | 1735761 | ID=Msa0933240-mRNA-1;Parent=Msa0933240;Name=Msa0933240-mRNA-1;_AED=0.14;_eAED=0.15;_QI=0|0|0|0.85|1|1|7|0|449 |
| chr6_3 | exon | 1735761 | 1735988 | 1735761 | ID=Msa0933240-mRNA-1:exon:675;Parent=Msa0933240-mRNA-1 |
| chr6_3 | exon | 1736162 | 1736257 | 1736162 | ID=Msa0933240-mRNA-1:exon:676;Parent=Msa0933240-mRNA-1 |
| chr6_3 | exon | 1738036 | 1738146 | 1738036 | ID=Msa0933240-mRNA-1:exon:677;Parent=Msa0933240-mRNA-1 |
| chr6_3 | exon | 1738232 | 1738541 | 1738232 | ID=Msa0933240-mRNA-1:exon:678;Parent=Msa0933240-mRNA-1 |
| chr6_3 | exon | 1738900 | 1738990 | 1738900 | ID=Msa0933240-mRNA-1:exon:679;Parent=Msa0933240-mRNA-1 |
| chr6_3 | exon | 1739216 | 1739549 | 1739216 | ID=Msa0933240-mRNA-1:exon:680;Parent=Msa0933240-mRNA-1 |
| chr6_3 | exon | 1739790 | 1739969 | 1739790 | ID=Msa0933240-mRNA-1:exon:681;Parent=Msa0933240-mRNA-1 |
| chr6_3 | CDS | 1735761 | 1735988 | 1735761 | ID=Msa0933240-mRNA-1:cds;Parent=Msa0933240-mRNA-1 |
| chr6_3 | CDS | 1736162 | 1736257 | 1736162 | ID=Msa0933240-mRNA-1:cds;Parent=Msa0933240-mRNA-1 |
| chr6_3 | CDS | 1738036 | 1738146 | 1738036 | ID=Msa0933240-mRNA-1:cds;Parent=Msa0933240-mRNA-1 |
| chr6_3 | CDS | 1738232 | 1738541 | 1738232 | ID=Msa0933240-mRNA-1:cds;Parent=Msa0933240-mRNA-1 |
| chr6_3 | CDS | 1738900 | 1738990 | 1738900 | ID=Msa0933240-mRNA-1:cds;Parent=Msa0933240-mRNA-1 |
| chr6_3 | CDS | 1739216 | 1739549 | 1739216 | ID=Msa0933240-mRNA-1:cds;Parent=Msa0933240-mRNA-1 |
| chr6_3 | CDS | 1739790 | 1739969 | 1739790 | ID=Msa0933240-mRNA-1:cds;Parent=Msa0933240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
