Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830040 | AFK37631.1 | 87.168 | 452 | 37 | 2 | 1 | 451 | 1 | 432 | 0.0 | 664 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830040 | sp|Q5RCE6|RL1D1_PONAB | 35.294 | 238 | 146 | 6 | 9 | 243 | 34 | 266 | 6.11e-37 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830040 | I3SBI9 | 87.168 | 452 | 37 | 2 | 1 | 451 | 1 | 432 | 0.0 | 664 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0019390 | Msa0830040 | 0.876194 | 1.694461e-68 | -8.615850e-47 |
| Msa0021220 | Msa0830040 | 0.849152 | 3.885483e-60 | -8.615850e-47 |
| Msa0027770 | Msa0830040 | 0.801146 | 1.033395e-48 | -8.615850e-47 |
| Msa0033950 | Msa0830040 | 0.823937 | 1.058087e-53 | -8.615850e-47 |
| Msa0034030 | Msa0830040 | 0.824755 | 6.796342e-54 | -8.615850e-47 |
| Msa0037770 | Msa0830040 | 0.816653 | 4.950760e-52 | -8.615850e-47 |
| Msa0043660 | Msa0830040 | 0.846165 | 2.578339e-59 | -8.615850e-47 |
| Msa0047160 | Msa0830040 | 0.824475 | 7.912074e-54 | -8.615850e-47 |
| Msa0059040 | Msa0830040 | 0.825870 | 3.702489e-54 | -8.615850e-47 |
| Msa0059110 | Msa0830040 | 0.815669 | 8.213879e-52 | -8.615850e-47 |
| Msa0063530 | Msa0830040 | 0.800236 | 1.584609e-48 | -8.615850e-47 |
| Msa0067630 | Msa0830040 | 0.808886 | 2.484447e-50 | -8.615850e-47 |
| Msa0070700 | Msa0830040 | 0.832624 | 8.502441e-56 | -8.615850e-47 |
| Msa0076780 | Msa0830040 | 0.825516 | 4.492022e-54 | -8.615850e-47 |
| Msa0079820 | Msa0830040 | 0.803384 | 3.576884e-49 | -8.615850e-47 |
| Msa0091560 | Msa0830040 | 0.823233 | 1.546822e-53 | -8.615850e-47 |
| Msa0094470 | Msa0830040 | 0.802995 | 4.305963e-49 | -8.615850e-47 |
| Msa0115130 | Msa0830040 | 0.851214 | 1.026683e-60 | -8.615850e-47 |
| Msa0118590 | Msa0830040 | 0.829840 | 4.109124e-55 | -8.615850e-47 |
| Msa0118710 | Msa0830040 | 0.802573 | 5.262639e-49 | -8.615850e-47 |
| Msa0605000 | Msa0830040 | 0.871808 | 5.153186e-67 | -8.615850e-47 |
| Msa0612390 | Msa0830040 | 0.811781 | 5.896138e-51 | -8.615850e-47 |
| Msa0648780 | Msa0830040 | 0.876752 | 1.087169e-68 | -8.615850e-47 |
| Msa0660850 | Msa0830040 | 0.801131 | 1.040492e-48 | -8.615850e-47 |
| Msa0685140 | Msa0830040 | 0.869005 | 4.281592e-66 | -8.615850e-47 |
| Msa0689260 | Msa0830040 | 0.839035 | 2.015269e-57 | -8.615850e-47 |
| Msa0691290 | Msa0830040 | 0.825627 | 4.227893e-54 | -8.615850e-47 |
| Msa0702370 | Msa0830040 | 0.821054 | 4.949862e-53 | -8.615850e-47 |
| Msa0702550 | Msa0830040 | 0.800426 | 1.449018e-48 | -8.615850e-47 |
| Msa0709040 | Msa0830040 | 0.822133 | 2.788278e-53 | -8.615850e-47 |
| Msa0711780 | Msa0830040 | 0.821394 | 4.132259e-53 | -8.615850e-47 |
| Msa0715650 | Msa0830040 | 0.831962 | 1.239467e-55 | -8.615850e-47 |
| Msa0719420 | Msa0830040 | 0.852265 | 5.170039e-61 | -8.615850e-47 |
| Msa0719610 | Msa0830040 | 0.859876 | 3.053507e-63 | -8.615850e-47 |
| Msa0753140 | Msa0830040 | 0.822072 | 2.880426e-53 | -8.615850e-47 |
| Msa0757940 | Msa0830040 | 0.803484 | 3.410340e-49 | -8.615850e-47 |
| Msa0763330 | Msa0830040 | 0.879072 | 1.679685e-69 | -8.615850e-47 |
| Msa0772480 | Msa0830040 | 0.837302 | 5.632995e-57 | -8.615850e-47 |
| Msa0789680 | Msa0830040 | 0.854097 | 1.543974e-61 | -8.615850e-47 |
| Msa0794670 | Msa0830040 | 0.806579 | 7.681787e-50 | -8.615850e-47 |
| Msa0795820 | Msa0830040 | 0.805918 | 1.058441e-49 | -8.615850e-47 |
| Msa0798440 | Msa0830040 | 0.826182 | 3.121207e-54 | -8.615850e-47 |
| Msa0799260 | Msa0830040 | 0.818043 | 2.408438e-52 | -8.615850e-47 |
| Msa0799310 | Msa0830040 | 0.809550 | 1.790403e-50 | -8.615850e-47 |
| Msa0802410 | Msa0830040 | 0.851145 | 1.073586e-60 | -8.615850e-47 |
| Msa0806880 | Msa0830040 | 0.803072 | 4.150245e-49 | -8.615850e-47 |
| Msa0830040 | Msa0830540 | 0.852976 | 3.240627e-61 | -8.615850e-47 |
| Msa0830040 | Msa0859180 | 0.818984 | 1.473820e-52 | -8.615850e-47 |
| Msa0830040 | Msa0869130 | 0.826278 | 2.961293e-54 | -8.615850e-47 |
| Msa0830040 | Msa0887250 | 0.816106 | 6.561462e-52 | -8.615850e-47 |
| Msa0830040 | Msa0909950 | 0.831711 | 1.429479e-55 | -8.615850e-47 |
| Msa0830040 | Msa0925770 | 0.845722 | 3.401372e-59 | -8.615850e-47 |
| Msa0830040 | Msa0933240 | 0.812229 | 4.708316e-51 | -8.615850e-47 |
| Msa0830040 | Msa0933300 | 0.811507 | 6.763644e-51 | -8.615850e-47 |
| Msa0830040 | Msa0945440 | 0.869230 | 3.616829e-66 | -8.615850e-47 |
| Msa0830040 | Msa0966010 | 0.811272 | 7.606814e-51 | -8.615850e-47 |
| Msa0830040 | Msa0970530 | 0.830796 | 2.399915e-55 | -8.615850e-47 |
| Msa0830040 | Msa0970600 | 0.826354 | 2.841091e-54 | -8.615850e-47 |
| Msa0830040 | Msa0987370 | 0.811153 | 8.071576e-51 | -8.615850e-47 |
| Msa0830040 | Msa0989540 | 0.833027 | 6.750980e-56 | -8.615850e-47 |
| Msa0830040 | Msa1088290 | 0.811835 | 5.738241e-51 | -8.615850e-47 |
| Msa0830040 | Msa1128570 | 0.814715 | 1.337642e-51 | -8.615850e-47 |
| Msa0830040 | Msa1137700 | 0.800267 | 1.561399e-48 | -8.615850e-47 |
| Msa0830040 | Msa1153060 | 0.846726 | 1.812781e-59 | -8.615850e-47 |
| Msa0830040 | Msa1160590 | 0.829131 | 6.111777e-55 | -8.615850e-47 |
| Msa0830040 | Msa1179070 | 0.802741 | 4.857169e-49 | -8.615850e-47 |
| Msa0830040 | Msa1181250 | 0.829953 | 3.857108e-55 | -8.615850e-47 |
| Msa0830040 | Msa1181330 | 0.832811 | 7.639417e-56 | -8.615850e-47 |
| Msa0830040 | Msa1197320 | 0.836950 | 6.927356e-57 | -8.615850e-47 |
| Msa0830040 | Msa1209200 | 0.847623 | 1.028722e-59 | -8.615850e-47 |
| Msa0830040 | Msa1209260 | 0.874393 | 6.995046e-68 | -8.615850e-47 |
| Msa0830040 | Msa1209760 | 0.826625 | 2.448098e-54 | -8.615850e-47 |
| Msa0830040 | Msa1219170 | 0.813831 | 2.097676e-51 | -8.615850e-47 |
| Msa0830040 | Msa1224810 | 0.817793 | 2.741996e-52 | -8.615850e-47 |
| Msa0830040 | Msa1237630 | 0.802306 | 5.973389e-49 | -8.615850e-47 |
| Msa0830040 | Msa1237700 | 0.804987 | 1.659482e-49 | -8.615850e-47 |
| Msa0830040 | Msa1250790 | 0.848370 | 6.402453e-60 | -8.615850e-47 |
| Msa0830040 | Msa1259060 | 0.806218 | 9.150834e-50 | -8.615850e-47 |
| Msa0830040 | Msa1265630 | 0.824266 | 8.860063e-54 | -8.615850e-47 |
| Msa0830040 | Msa1302380 | 0.816755 | 4.696489e-52 | -8.615850e-47 |
| Msa0830040 | Msa1332590 | 0.828828 | 7.235107e-55 | -8.615850e-47 |
| Msa0830040 | Msa1351540 | 0.805879 | 1.078841e-49 | -8.615850e-47 |
| Msa0830040 | Msa1358250 | 0.838666 | 2.510722e-57 | -8.615850e-47 |
| Msa0830040 | Msa1392780 | 0.838471 | 2.820640e-57 | -8.615850e-47 |
| Msa0830040 | Msa1394290 | 0.817049 | 4.033842e-52 | -8.615850e-47 |
| Msa0830040 | Msa1400220 | 0.825044 | 5.808332e-54 | -8.615850e-47 |
| Msa0830040 | Msa1400580 | 0.813263 | 2.796577e-51 | -8.615850e-47 |
| Msa0830040 | Msa1413500 | 0.806040 | 9.976445e-50 | -8.615850e-47 |
| Msa0830040 | Msa1419870 | 0.832451 | 9.383686e-56 | -8.615850e-47 |
| Msa0830040 | Msa1436520 | 0.804976 | 1.667503e-49 | -8.615850e-47 |
| Msa0830040 | Msa1457920 | 0.831810 | 1.351476e-55 | -8.615850e-47 |
| Msa0830040 | Msa1458810 | 0.803819 | 2.905896e-49 | -8.615850e-47 |
| Msa0127020 | Msa0830040 | 0.826027 | 3.398575e-54 | -8.615850e-47 |
| Msa0137550 | Msa0830040 | 0.838537 | 2.711782e-57 | -8.615850e-47 |
| Msa0139350 | Msa0830040 | 0.803342 | 3.649402e-49 | -8.615850e-47 |
| Msa0141660 | Msa0830040 | 0.829712 | 4.416141e-55 | -8.615850e-47 |
| Msa0144370 | Msa0830040 | 0.834192 | 3.455334e-56 | -8.615850e-47 |
| Msa0146770 | Msa0830040 | 0.831476 | 1.634062e-55 | -8.615850e-47 |
| Msa0158000 | Msa0830040 | 0.813687 | 2.256598e-51 | -8.615850e-47 |
| Msa0159170 | Msa0830040 | 0.847276 | 1.280747e-59 | -8.615850e-47 |
| Msa0165660 | Msa0830040 | 0.805693 | 1.179889e-49 | -8.615850e-47 |
| Msa0168230 | Msa0830040 | 0.846862 | 1.663200e-59 | -8.615850e-47 |
| Msa0169280 | Msa0830040 | 0.827586 | 1.441640e-54 | -8.615850e-47 |
| Msa0189300 | Msa0830040 | 0.845327 | 4.351834e-59 | -8.615850e-47 |
| Msa0231660 | Msa0830040 | 0.839737 | 1.324744e-57 | -8.615850e-47 |
| Msa0388700 | Msa0830040 | 0.815604 | 8.492255e-52 | -8.615850e-47 |
| Msa0397540 | Msa0830040 | 0.821986 | 3.016028e-53 | -8.615850e-47 |
| Msa0398810 | Msa0830040 | 0.820111 | 8.150279e-53 | -8.615850e-47 |
| Msa0403500 | Msa0830040 | 0.829321 | 5.494734e-55 | -8.615850e-47 |
| Msa0411430 | Msa0830040 | 0.805046 | 1.612531e-49 | -8.615850e-47 |
| Msa0446050 | Msa0830040 | 0.825832 | 3.781104e-54 | -8.615850e-47 |
| Msa0467220 | Msa0830040 | 0.814672 | 1.367241e-51 | -8.615850e-47 |
| Msa0481030 | Msa0830040 | 0.803294 | 3.733109e-49 | -8.615850e-47 |
| Msa0482130 | Msa0830040 | 0.863026 | 3.339114e-64 | -8.615850e-47 |
| Msa0296050 | Msa0830040 | -0.800838 | 1.194206e-48 | -8.615850e-47 |
| Msa0309750 | Msa0830040 | 0.800253 | 1.571670e-48 | -8.615850e-47 |
| Msa0325590 | Msa0830040 | 0.850661 | 1.470362e-60 | -8.615850e-47 |
| Msa0345350 | Msa0830040 | 0.805205 | 1.493783e-49 | -8.615850e-47 |
| Msa0351990 | Msa0830040 | 0.803797 | 2.936552e-49 | -8.615850e-47 |
| Msa0486650 | Msa0830040 | 0.815564 | 8.666456e-52 | -8.615850e-47 |
| Msa0542090 | Msa0830040 | 0.869487 | 2.983884e-66 | -8.615850e-47 |
| Msa0542130 | Msa0830040 | 0.867002 | 1.885642e-65 | -8.615850e-47 |
| Msa0554290 | Msa0830040 | 0.865047 | 7.839197e-65 | -8.615850e-47 |
| Msa0566100 | Msa0830040 | 0.812032 | 5.198052e-51 | -8.615850e-47 |
| Msa0581280 | Msa0830040 | 0.857348 | 1.735256e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830040 | MtrunA17_Chr2g0312311 | 87.727 | 440 | 33 | 2 | 1 | 439 | 1 | 420 | 0.0 | 653 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830040 | AT3G58660.1 | 50.479 | 313 | 136 | 4 | 10 | 306 | 28 | 337 | 2.64e-105 | 320 |
| Msa0830040 | AT2G42650.1 | 50.313 | 320 | 139 | 8 | 10 | 315 | 8 | 321 | 1.21e-100 | 305 |
| Msa0830040 | AT1G06380.1 | 50.000 | 260 | 107 | 5 | 1 | 244 | 1 | 253 | 2.01e-79 | 247 |
Find 89 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGCTTTGCCGGTTTATC+AGG | 0.252561 | 5_4:-3059033 | Msa0830040:CDS |
| GTTGGAGTCTCTTGCTTTGC+CGG | 0.274544 | 5_4:-3059042 | Msa0830040:CDS |
| TTCGTCTTCGTCAAAGAGTT+TGG | 0.284364 | 5_4:+3059646 | None:intergenic |
| GCCGTTGTTGCCGAGGTTAT+TGG | 0.297689 | 5_4:-3059318 | Msa0830040:CDS |
| TGCGACGGTGTCGGCGTTGC+TGG | 0.306658 | 5_4:+3059724 | None:intergenic |
| CCGTTGTTGCCGAGGTTATT+GGG | 0.308899 | 5_4:-3059317 | Msa0830040:CDS |
| GCCGGTTTATCAGGCTGTTC+CGG | 0.333800 | 5_4:-3059024 | Msa0830040:CDS |
| GATTCATGAGATTAAGTATA+TGG | 0.340892 | 5_4:-3058901 | Msa0830040:CDS |
| AGCTTAAGAATCTTCGAAAT+AGG | 0.370256 | 5_4:+3059431 | None:intergenic |
| TGTTAGTGGTGGTGGTGATA+AGG | 0.379181 | 5_4:-3058805 | Msa0830040:CDS |
| TAAGGATTTGGAGGATAAGT+TGG | 0.380856 | 5_4:-3058976 | Msa0830040:CDS |
| GAGATGAGAGAGTGAGGGAT+TGG | 0.381358 | 5_4:+3059554 | None:intergenic |
| TGGATTTGCAGAAGAAGAAT+TGG | 0.381611 | 5_4:-3059256 | Msa0830040:CDS |
| TATCTTCTGAGCTTCGTCTT+TGG | 0.384246 | 5_4:+3059472 | None:intergenic |
| TCGTCTTCGTCAAAGAGTTT+GGG | 0.386076 | 5_4:+3059647 | None:intergenic |
| AAAGAGGATTTGAGTGAGTT+GGG | 0.391350 | 5_4:-3058708 | Msa0830040:CDS |
| TCCGGAACAGCCTGATAAAC+CGG | 0.418750 | 5_4:+3059023 | None:intergenic |
| AGATGAGAGAGTGAGGGATT+GGG | 0.425499 | 5_4:+3059555 | None:intergenic |
| GAAGGTGGCTAAGTTGAGTA+TGG | 0.428280 | 5_4:-3059165 | Msa0830040:CDS |
| AAAAGAGGATTTGAGTGAGT+TGG | 0.432057 | 5_4:-3058709 | Msa0830040:CDS |
| GAAGTCATCCGTGAAGGAAA+AGG | 0.432264 | 5_4:-3058583 | Msa0830040:CDS |
| CGAAAGGGGCGTGGCTGAGT+TGG | 0.441674 | 5_4:-3058541 | Msa0830040:CDS |
| GTTTAGCGGAAATGAATCAT+TGG | 0.447165 | 5_4:-3058487 | Msa0830040:CDS |
| ATCGTCCGTTTGAGGCGAAA+AGG | 0.448339 | 5_4:-3059388 | Msa0830040:CDS |
| TGAATCATTGGTCAAGGATG+AGG | 0.453041 | 5_4:-3058475 | Msa0830040:CDS |
| AGCTCAGAAGATAGTTCAAT+CGG | 0.460602 | 5_4:-3059462 | Msa0830040:CDS |
| GTGAGTAAGAAGAGGAAGAA+AGG | 0.462622 | 5_4:-3058738 | Msa0830040:CDS |
| CCGTAGACTCTCTTCTCAAA+TGG | 0.472791 | 5_4:-3059697 | Msa0830040:CDS |
| GAGATTGGTGATATCGAGAG+TGG | 0.475792 | 5_4:-3058768 | Msa0830040:CDS |
| GAAGAGGAAGATTCCGGTGC+AGG | 0.476004 | 5_4:-3059279 | Msa0830040:CDS |
| GAAGAAGTGCTCATGTTTAG+CGG | 0.478710 | 5_4:-3058501 | Msa0830040:CDS |
| GATGTTAGATTGAAGATTGA+GGG | 0.480739 | 5_4:-3059002 | Msa0830040:CDS |
| GTTGGTGAAGGATGAGAAGA+AGG | 0.482303 | 5_4:-3058958 | Msa0830040:CDS |
| ATTGGTCAAGGATGAGGGTT+CGG | 0.485154 | 5_4:-3058469 | Msa0830040:CDS |
| CTCTCTCATCTCCGCAGCAT+CGG | 0.488711 | 5_4:-3059543 | Msa0830040:CDS |
| CGAAGAAGAGTAAGAAGAAA+GGG | 0.491276 | 5_4:-3058926 | Msa0830040:CDS |
| GTTGATGATGATAGAGAGAT+TGG | 0.494305 | 5_4:-3058783 | Msa0830040:CDS |
| AAGTCATCCGTGAAGGAAAA+GGG | 0.497780 | 5_4:-3058582 | Msa0830040:CDS |
| GCGAAGAAGAGTAAGAAGAA+AGG | 0.499538 | 5_4:-3058927 | Msa0830040:CDS |
| TTCTGCAAATCCACCTGCAC+CGG | 0.501939 | 5_4:+3059266 | None:intergenic |
| GGGAAGTGTGAAATCATTGA+AGG | 0.502129 | 5_4:-3058688 | Msa0830040:CDS |
| TGAGAATGTTGTTGCTGCAA+TGG | 0.511316 | 5_4:-3059126 | Msa0830040:CDS |
| CCCAATAACCTCGGCAACAA+CGG | 0.513459 | 5_4:+3059317 | None:intergenic |
| GGTGTCGGCGTTGCTGGTTA+CGG | 0.518609 | 5_4:+3059730 | None:intergenic |
| CTAAAGAAAATCCCATCAAA+AGG | 0.519721 | 5_4:-3059599 | Msa0830040:CDS |
| GACGGATTATCGTCCGTTTG+AGG | 0.522523 | 5_4:-3059396 | Msa0830040:CDS |
| AAAGAAGAAGAATAACGAAA+GGG | 0.527789 | 5_4:-3058556 | Msa0830040:CDS |
| TGGGACTTGTAGTGTGGTGA+AGG | 0.531069 | 5_4:-3059183 | Msa0830040:CDS |
| CAAGAGTAAGAAAAGTAAGA+AGG | 0.531808 | 5_4:-3058412 | Msa0830040:CDS |
| TTTGGAGGATAAGTTGGTGA+AGG | 0.536369 | 5_4:-3058970 | Msa0830040:CDS |
| GGATGTTAGATTGAAGATTG+AGG | 0.537355 | 5_4:-3059003 | Msa0830040:CDS |
| TCAATCTTCAATCTAACATC+CGG | 0.538457 | 5_4:+3059005 | None:intergenic |
| GAGGGTTGGTGAGTAAGAAG+AGG | 0.551935 | 5_4:-3058746 | Msa0830040:CDS |
| CCATTTGAGAAGAGAGTCTA+CGG | 0.552491 | 5_4:+3059697 | None:intergenic |
| AGAAGAGTAAGAAGAAAGGG+AGG | 0.553817 | 5_4:-3058923 | Msa0830040:CDS |
| AATGTGAATACTGCAGAAGA+AGG | 0.558711 | 5_4:-3058633 | Msa0830040:CDS |
| TCGTCTTTGGTGATACGAGA+GGG | 0.562374 | 5_4:+3059485 | None:intergenic |
| ATTGGTGATATCGAGAGTGG+AGG | 0.563733 | 5_4:-3058765 | Msa0830040:CDS |
| CGGAAATGAATCATTGGTCA+AGG | 0.564280 | 5_4:-3058481 | Msa0830040:CDS |
| CGTTGTTGCCGAGGTTATTG+GGG | 0.570182 | 5_4:-3059316 | Msa0830040:CDS |
| GAGGAAGATTCCGGTGCAGG+TGG | 0.571715 | 5_4:-3059276 | Msa0830040:CDS |
| TTGGTGATATCGAGAGTGGA+GGG | 0.571912 | 5_4:-3058764 | Msa0830040:CDS |
| CTATTGTGCCGTTGTTGCCG+AGG | 0.574937 | 5_4:-3059325 | Msa0830040:CDS |
| TTCGTCTTTGGTGATACGAG+AGG | 0.580043 | 5_4:+3059484 | None:intergenic |
| GAGAAAGACGGATGATGTGA+AGG | 0.580519 | 5_4:-3058436 | Msa0830040:CDS |
| GACTTGTAGTGTGGTGAAGG+TGG | 0.580675 | 5_4:-3059180 | Msa0830040:CDS |
| GAATCATTGGTCAAGGATGA+GGG | 0.583068 | 5_4:-3058474 | Msa0830040:CDS |
| GAAGAATAACGAAAGGGGCG+TGG | 0.588459 | 5_4:-3058550 | Msa0830040:CDS |
| CAAAGAAGAAGAATAACGAA+AGG | 0.592438 | 5_4:-3058557 | Msa0830040:CDS |
| AACTGCTTCCCCAATAACCT+CGG | 0.596591 | 5_4:+3059308 | None:intergenic |
| TTGGAAGGAGCAGATTGAGA+AGG | 0.597099 | 5_4:-3059237 | Msa0830040:CDS |
| GAATGTTGTTGCTGCAATGG+AGG | 0.598147 | 5_4:-3059123 | Msa0830040:CDS |
| TGTTAGATTGAAGATTGAGG+GGG | 0.600866 | 5_4:-3059000 | Msa0830040:CDS |
| GATGATAGAATGAGTTCAGA+TGG | 0.609600 | 5_4:-3058879 | Msa0830040:CDS |
| GAATAAGAAGTCATCCGTGA+AGG | 0.611646 | 5_4:-3058589 | Msa0830040:CDS |
| TGCAATGGAGGGTGTTGTCG+AGG | 0.617796 | 5_4:-3059111 | Msa0830040:CDS |
| GCTGCGGAGATGAGAGAGTG+AGG | 0.618794 | 5_4:+3059548 | None:intergenic |
| GAGGACTGGGACTTGTAGTG+TGG | 0.619046 | 5_4:-3059189 | Msa0830040:CDS |
| GGAAGTGTGAAATCATTGAA+GGG | 0.619801 | 5_4:-3058687 | Msa0830040:CDS |
| TGATATCGAGAGTGGAGGGT+TGG | 0.619964 | 5_4:-3058760 | Msa0830040:CDS |
| TTTGCAGAAGAAGAATTGGA+AGG | 0.627135 | 5_4:-3059252 | Msa0830040:CDS |
| ATGTTAGATTGAAGATTGAG+GGG | 0.629816 | 5_4:-3059001 | Msa0830040:CDS |
| TAAGCTTTCGAAGCTCATGA+CGG | 0.630267 | 5_4:-3059414 | Msa0830040:CDS |
| AATGTTGTTGCTGCAATGGA+GGG | 0.634978 | 5_4:-3059122 | Msa0830040:CDS |
| GTCGGCGTTGCTGGTTACGG+TGG | 0.647021 | 5_4:+3059733 | None:intergenic |
| GAGACACTGTTCCGATGCTG+CGG | 0.652900 | 5_4:+3059532 | None:intergenic |
| CTGCGGAGATGAGAGAGTGA+GGG | 0.658572 | 5_4:+3059549 | None:intergenic |
| AAGAAGAAGAATAACGAAAG+GGG | 0.663465 | 5_4:-3058555 | Msa0830040:CDS |
| GGACAAGAAGAAGAGAAAGA+CGG | 0.680373 | 5_4:-3058448 | Msa0830040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTTGATGGGATTTTCTTTA+GGG | + | chr5_4:3058543-3058562 | None:intergenic | 25.0% |
| ! | GATTCATGAGATTAAGTATA+TGG | - | chr5_4:3059240-3059259 | Msa0830040:CDS | 25.0% |
| ! | CTAAAAAGAAGAAGAAAGAT+GGG | - | chr5_4:3059482-3059501 | Msa0830040:CDS | 25.0% |
| ! | AAAGAAGAAGAATAACGAAA+GGG | - | chr5_4:3059585-3059604 | Msa0830040:CDS | 25.0% |
| !! | TTTTGATGGGATTTTCTTTA+GGG | + | chr5_4:3058543-3058562 | None:intergenic | 25.0% |
| ! | GATTCATGAGATTAAGTATA+TGG | - | chr5_4:3059240-3059259 | Msa0830040:CDS | 25.0% |
| ! | CTAAAAAGAAGAAGAAAGAT+GGG | - | chr5_4:3059482-3059501 | Msa0830040:CDS | 25.0% |
| ! | AAAGAAGAAGAATAACGAAA+GGG | - | chr5_4:3059585-3059604 | Msa0830040:CDS | 25.0% |
| ! | CTTTTGATGGGATTTTCTTT+AGG | + | chr5_4:3058544-3058563 | None:intergenic | 30.0% |
| CTAAAGAAAATCCCATCAAA+AGG | - | chr5_4:3058542-3058561 | Msa0830040:CDS | 30.0% | |
| AGCTTAAGAATCTTCGAAAT+AGG | + | chr5_4:3058713-3058732 | None:intergenic | 30.0% | |
| !! | TTTTAAGAAGAGGAAGATTC+CGG | - | chr5_4:3058856-3058875 | Msa0830040:CDS | 30.0% |
| !! | GTCTTTTCATGTTAAGTTGT+TGG | - | chr5_4:3059081-3059100 | Msa0830040:CDS | 30.0% |
| TCAATCTTCAATCTAACATC+CGG | + | chr5_4:3059139-3059158 | None:intergenic | 30.0% | |
| GATGTTAGATTGAAGATTGA+GGG | - | chr5_4:3059139-3059158 | Msa0830040:CDS | 30.0% | |
| ATGTTAGATTGAAGATTGAG+GGG | - | chr5_4:3059140-3059159 | Msa0830040:CDS | 30.0% | |
| ! | ATCGATGATGATTTTGTTAG+TGG | - | chr5_4:3059322-3059341 | Msa0830040:CDS | 30.0% |
| GCTAAAAAGAAGAAGAAAGA+TGG | - | chr5_4:3059481-3059500 | Msa0830040:CDS | 30.0% | |
| CAAAGAAGAAGAATAACGAA+AGG | - | chr5_4:3059584-3059603 | Msa0830040:CDS | 30.0% | |
| AAGAAGAAGAATAACGAAAG+GGG | - | chr5_4:3059586-3059605 | Msa0830040:CDS | 30.0% | |
| CAAGAGTAAGAAAAGTAAGA+AGG | - | chr5_4:3059729-3059748 | Msa0830040:CDS | 30.0% | |
| ! | CTTTTGATGGGATTTTCTTT+AGG | + | chr5_4:3058544-3058563 | None:intergenic | 30.0% |
| CTAAAGAAAATCCCATCAAA+AGG | - | chr5_4:3058542-3058561 | Msa0830040:CDS | 30.0% | |
| AGCTTAAGAATCTTCGAAAT+AGG | + | chr5_4:3058713-3058732 | None:intergenic | 30.0% | |
| !! | TTTTAAGAAGAGGAAGATTC+CGG | - | chr5_4:3058856-3058875 | Msa0830040:CDS | 30.0% |
| !! | GTCTTTTCATGTTAAGTTGT+TGG | - | chr5_4:3059081-3059100 | Msa0830040:CDS | 30.0% |
| TCAATCTTCAATCTAACATC+CGG | + | chr5_4:3059139-3059158 | None:intergenic | 30.0% | |
| GATGTTAGATTGAAGATTGA+GGG | - | chr5_4:3059139-3059158 | Msa0830040:CDS | 30.0% | |
| ATGTTAGATTGAAGATTGAG+GGG | - | chr5_4:3059140-3059159 | Msa0830040:CDS | 30.0% | |
| ! | ATCGATGATGATTTTGTTAG+TGG | - | chr5_4:3059322-3059341 | Msa0830040:CDS | 30.0% |
| GCTAAAAAGAAGAAGAAAGA+TGG | - | chr5_4:3059481-3059500 | Msa0830040:CDS | 30.0% | |
| CAAAGAAGAAGAATAACGAA+AGG | - | chr5_4:3059584-3059603 | Msa0830040:CDS | 30.0% | |
| AAGAAGAAGAATAACGAAAG+GGG | - | chr5_4:3059586-3059605 | Msa0830040:CDS | 30.0% | |
| CAAGAGTAAGAAAAGTAAGA+AGG | - | chr5_4:3059729-3059748 | Msa0830040:CDS | 30.0% | |
| !! | GTCAAAGAGTTTGGGTTTTT+CGG | + | chr5_4:3058489-3058508 | None:intergenic | 35.0% |
| !!! | TTTTCTTTAGGGTTAGGATG+AGG | + | chr5_4:3058532-3058551 | None:intergenic | 35.0% |
| !!! | ATGGGATTTTCTTTAGGGTT+AGG | + | chr5_4:3058538-3058557 | None:intergenic | 35.0% |
| AGCTCAGAAGATAGTTCAAT+CGG | - | chr5_4:3058679-3058698 | Msa0830040:CDS | 35.0% | |
| !!! | GGAAGCAGTTTTTTAAGAAG+AGG | - | chr5_4:3058846-3058865 | Msa0830040:CDS | 35.0% |
| TGGATTTGCAGAAGAAGAAT+TGG | - | chr5_4:3058885-3058904 | Msa0830040:CDS | 35.0% | |
| TTTGCAGAAGAAGAATTGGA+AGG | - | chr5_4:3058889-3058908 | Msa0830040:CDS | 35.0% | |
| !!! | CTTCTGCTTTGTTGTTTTTG+AGG | - | chr5_4:3058933-3058952 | Msa0830040:CDS | 35.0% |
| !!! | CTTTGTTGTTTTTGAGGACT+GGG | - | chr5_4:3058939-3058958 | Msa0830040:CDS | 35.0% |
| GGATGTTAGATTGAAGATTG+AGG | - | chr5_4:3059138-3059157 | Msa0830040:CDS | 35.0% | |
| TGTTAGATTGAAGATTGAGG+GGG | - | chr5_4:3059141-3059160 | Msa0830040:CDS | 35.0% | |
| TAAGGATTTGGAGGATAAGT+TGG | - | chr5_4:3059165-3059184 | Msa0830040:CDS | 35.0% | |
| CGAAGAAGAGTAAGAAGAAA+GGG | - | chr5_4:3059215-3059234 | Msa0830040:CDS | 35.0% | |
| GATGATAGAATGAGTTCAGA+TGG | - | chr5_4:3059262-3059281 | Msa0830040:CDS | 35.0% | |
| ! | GATGATGATTTTGTTAGTGG+TGG | - | chr5_4:3059325-3059344 | Msa0830040:CDS | 35.0% |
| !! | GTTGATGATGATAGAGAGAT+TGG | - | chr5_4:3059358-3059377 | Msa0830040:CDS | 35.0% |
| GAAGAAAGGAGTGAAAAAAG+AGG | - | chr5_4:3059417-3059436 | Msa0830040:CDS | 35.0% | |
| AAAAGAGGATTTGAGTGAGT+TGG | - | chr5_4:3059432-3059451 | Msa0830040:CDS | 35.0% | |
| AAAGAGGATTTGAGTGAGTT+GGG | - | chr5_4:3059433-3059452 | Msa0830040:CDS | 35.0% | |
| ! | GGAAGTGTGAAATCATTGAA+GGG | - | chr5_4:3059454-3059473 | Msa0830040:CDS | 35.0% |
| AATGTGAATACTGCAGAAGA+AGG | - | chr5_4:3059508-3059527 | Msa0830040:CDS | 35.0% | |
| GTTTAGCGGAAATGAATCAT+TGG | - | chr5_4:3059654-3059673 | Msa0830040:CDS | 35.0% | |
| !! | GTCAAAGAGTTTGGGTTTTT+CGG | + | chr5_4:3058489-3058508 | None:intergenic | 35.0% |
| !!! | TTTTCTTTAGGGTTAGGATG+AGG | + | chr5_4:3058532-3058551 | None:intergenic | 35.0% |
| !!! | ATGGGATTTTCTTTAGGGTT+AGG | + | chr5_4:3058538-3058557 | None:intergenic | 35.0% |
| AGCTCAGAAGATAGTTCAAT+CGG | - | chr5_4:3058679-3058698 | Msa0830040:CDS | 35.0% | |
| !!! | GGAAGCAGTTTTTTAAGAAG+AGG | - | chr5_4:3058846-3058865 | Msa0830040:CDS | 35.0% |
| TGGATTTGCAGAAGAAGAAT+TGG | - | chr5_4:3058885-3058904 | Msa0830040:CDS | 35.0% | |
| TTTGCAGAAGAAGAATTGGA+AGG | - | chr5_4:3058889-3058908 | Msa0830040:CDS | 35.0% | |
| !!! | CTTCTGCTTTGTTGTTTTTG+AGG | - | chr5_4:3058933-3058952 | Msa0830040:CDS | 35.0% |
| !!! | CTTTGTTGTTTTTGAGGACT+GGG | - | chr5_4:3058939-3058958 | Msa0830040:CDS | 35.0% |
| GGATGTTAGATTGAAGATTG+AGG | - | chr5_4:3059138-3059157 | Msa0830040:CDS | 35.0% | |
| TGTTAGATTGAAGATTGAGG+GGG | - | chr5_4:3059141-3059160 | Msa0830040:CDS | 35.0% | |
| TAAGGATTTGGAGGATAAGT+TGG | - | chr5_4:3059165-3059184 | Msa0830040:CDS | 35.0% | |
| CGAAGAAGAGTAAGAAGAAA+GGG | - | chr5_4:3059215-3059234 | Msa0830040:CDS | 35.0% | |
| GATGATAGAATGAGTTCAGA+TGG | - | chr5_4:3059262-3059281 | Msa0830040:CDS | 35.0% | |
| ! | GATGATGATTTTGTTAGTGG+TGG | - | chr5_4:3059325-3059344 | Msa0830040:CDS | 35.0% |
| !! | GTTGATGATGATAGAGAGAT+TGG | - | chr5_4:3059358-3059377 | Msa0830040:CDS | 35.0% |
| GAAGAAAGGAGTGAAAAAAG+AGG | - | chr5_4:3059417-3059436 | Msa0830040:CDS | 35.0% | |
| AAAAGAGGATTTGAGTGAGT+TGG | - | chr5_4:3059432-3059451 | Msa0830040:CDS | 35.0% | |
| AAAGAGGATTTGAGTGAGTT+GGG | - | chr5_4:3059433-3059452 | Msa0830040:CDS | 35.0% | |
| ! | GGAAGTGTGAAATCATTGAA+GGG | - | chr5_4:3059454-3059473 | Msa0830040:CDS | 35.0% |
| AATGTGAATACTGCAGAAGA+AGG | - | chr5_4:3059508-3059527 | Msa0830040:CDS | 35.0% | |
| GTTTAGCGGAAATGAATCAT+TGG | - | chr5_4:3059654-3059673 | Msa0830040:CDS | 35.0% | |
| CCATTTGAGAAGAGAGTCTA+CGG | + | chr5_4:3058447-3058466 | None:intergenic | 40.0% | |
| TCGTCTTCGTCAAAGAGTTT+GGG | + | chr5_4:3058497-3058516 | None:intergenic | 40.0% | |
| TTCGTCTTCGTCAAAGAGTT+TGG | + | chr5_4:3058498-3058517 | None:intergenic | 40.0% | |
| TATCTTCTGAGCTTCGTCTT+TGG | + | chr5_4:3058672-3058691 | None:intergenic | 40.0% | |
| TAAGCTTTCGAAGCTCATGA+CGG | - | chr5_4:3058727-3058746 | Msa0830040:CDS | 40.0% | |
| ! | AACTTCCTTTTCGCCTCAAA+CGG | + | chr5_4:3058761-3058780 | None:intergenic | 40.0% |
| !!! | GCTTTGTTGTTTTTGAGGAC+TGG | - | chr5_4:3058938-3058957 | Msa0830040:CDS | 40.0% |
| TGAGAATGTTGTTGCTGCAA+TGG | - | chr5_4:3059015-3059034 | Msa0830040:CDS | 40.0% | |
| AATGTTGTTGCTGCAATGGA+GGG | - | chr5_4:3059019-3059038 | Msa0830040:CDS | 40.0% | |
| ! | TCGAGGTTTTACCGAAGAAA+TGG | - | chr5_4:3059047-3059066 | Msa0830040:CDS | 40.0% |
| ! | CGAGGTTTTACCGAAGAAAT+GGG | - | chr5_4:3059048-3059067 | Msa0830040:CDS | 40.0% |
| ! | GAGGTTTTACCGAAGAAATG+GGG | - | chr5_4:3059049-3059068 | Msa0830040:CDS | 40.0% |
| ! | AGGTTTTACCGAAGAAATGG+GGG | - | chr5_4:3059050-3059069 | Msa0830040:CDS | 40.0% |
| ATTGAAGATTGAGGGGGTTA+AGG | - | chr5_4:3059147-3059166 | Msa0830040:CDS | 40.0% | |
| !! | TTTGGAGGATAAGTTGGTGA+AGG | - | chr5_4:3059171-3059190 | Msa0830040:CDS | 40.0% |
| GCGAAGAAGAGTAAGAAGAA+AGG | - | chr5_4:3059214-3059233 | Msa0830040:CDS | 40.0% | |
| AGAAGAGTAAGAAGAAAGGG+AGG | - | chr5_4:3059218-3059237 | Msa0830040:CDS | 40.0% | |
| ! | GATGATTTTGTTAGTGGTGG+TGG | - | chr5_4:3059328-3059347 | Msa0830040:CDS | 40.0% |
| GTGAGTAAGAAGAGGAAGAA+AGG | - | chr5_4:3059403-3059422 | Msa0830040:CDS | 40.0% | |
| ! | GGGAAGTGTGAAATCATTGA+AGG | - | chr5_4:3059453-3059472 | Msa0830040:CDS | 40.0% |
| GAATAAGAAGTCATCCGTGA+AGG | - | chr5_4:3059552-3059571 | Msa0830040:CDS | 40.0% | |
| AAGTCATCCGTGAAGGAAAA+GGG | - | chr5_4:3059559-3059578 | Msa0830040:CDS | 40.0% | |
| ! | CTTTGAACCCTTTTCCTTCA+CGG | + | chr5_4:3059569-3059588 | None:intergenic | 40.0% |
| !! | GAAGAAGTGCTCATGTTTAG+CGG | - | chr5_4:3059640-3059659 | Msa0830040:CDS | 40.0% |
| CGGAAATGAATCATTGGTCA+AGG | - | chr5_4:3059660-3059679 | Msa0830040:CDS | 40.0% | |
| TGAATCATTGGTCAAGGATG+AGG | - | chr5_4:3059666-3059685 | Msa0830040:CDS | 40.0% | |
| GAATCATTGGTCAAGGATGA+GGG | - | chr5_4:3059667-3059686 | Msa0830040:CDS | 40.0% | |
| GGACAAGAAGAAGAGAAAGA+CGG | - | chr5_4:3059693-3059712 | Msa0830040:CDS | 40.0% | |
| CCATTTGAGAAGAGAGTCTA+CGG | + | chr5_4:3058447-3058466 | None:intergenic | 40.0% | |
| TCGTCTTCGTCAAAGAGTTT+GGG | + | chr5_4:3058497-3058516 | None:intergenic | 40.0% | |
| TTCGTCTTCGTCAAAGAGTT+TGG | + | chr5_4:3058498-3058517 | None:intergenic | 40.0% | |
| TATCTTCTGAGCTTCGTCTT+TGG | + | chr5_4:3058672-3058691 | None:intergenic | 40.0% | |
| TAAGCTTTCGAAGCTCATGA+CGG | - | chr5_4:3058727-3058746 | Msa0830040:CDS | 40.0% | |
| ! | AACTTCCTTTTCGCCTCAAA+CGG | + | chr5_4:3058761-3058780 | None:intergenic | 40.0% |
| !!! | GCTTTGTTGTTTTTGAGGAC+TGG | - | chr5_4:3058938-3058957 | Msa0830040:CDS | 40.0% |
| TGAGAATGTTGTTGCTGCAA+TGG | - | chr5_4:3059015-3059034 | Msa0830040:CDS | 40.0% | |
| AATGTTGTTGCTGCAATGGA+GGG | - | chr5_4:3059019-3059038 | Msa0830040:CDS | 40.0% | |
| ! | TCGAGGTTTTACCGAAGAAA+TGG | - | chr5_4:3059047-3059066 | Msa0830040:CDS | 40.0% |
| ! | CGAGGTTTTACCGAAGAAAT+GGG | - | chr5_4:3059048-3059067 | Msa0830040:CDS | 40.0% |
| ! | GAGGTTTTACCGAAGAAATG+GGG | - | chr5_4:3059049-3059068 | Msa0830040:CDS | 40.0% |
| ! | AGGTTTTACCGAAGAAATGG+GGG | - | chr5_4:3059050-3059069 | Msa0830040:CDS | 40.0% |
| ATTGAAGATTGAGGGGGTTA+AGG | - | chr5_4:3059147-3059166 | Msa0830040:CDS | 40.0% | |
| !! | TTTGGAGGATAAGTTGGTGA+AGG | - | chr5_4:3059171-3059190 | Msa0830040:CDS | 40.0% |
| GCGAAGAAGAGTAAGAAGAA+AGG | - | chr5_4:3059214-3059233 | Msa0830040:CDS | 40.0% | |
| AGAAGAGTAAGAAGAAAGGG+AGG | - | chr5_4:3059218-3059237 | Msa0830040:CDS | 40.0% | |
| ! | GATGATTTTGTTAGTGGTGG+TGG | - | chr5_4:3059328-3059347 | Msa0830040:CDS | 40.0% |
| GTGAGTAAGAAGAGGAAGAA+AGG | - | chr5_4:3059403-3059422 | Msa0830040:CDS | 40.0% | |
| ! | GGGAAGTGTGAAATCATTGA+AGG | - | chr5_4:3059453-3059472 | Msa0830040:CDS | 40.0% |
| GAATAAGAAGTCATCCGTGA+AGG | - | chr5_4:3059552-3059571 | Msa0830040:CDS | 40.0% | |
| AAGTCATCCGTGAAGGAAAA+GGG | - | chr5_4:3059559-3059578 | Msa0830040:CDS | 40.0% | |
| ! | CTTTGAACCCTTTTCCTTCA+CGG | + | chr5_4:3059569-3059588 | None:intergenic | 40.0% |
| !! | GAAGAAGTGCTCATGTTTAG+CGG | - | chr5_4:3059640-3059659 | Msa0830040:CDS | 40.0% |
| CGGAAATGAATCATTGGTCA+AGG | - | chr5_4:3059660-3059679 | Msa0830040:CDS | 40.0% | |
| TGAATCATTGGTCAAGGATG+AGG | - | chr5_4:3059666-3059685 | Msa0830040:CDS | 40.0% | |
| GAATCATTGGTCAAGGATGA+GGG | - | chr5_4:3059667-3059686 | Msa0830040:CDS | 40.0% | |
| GGACAAGAAGAAGAGAAAGA+CGG | - | chr5_4:3059693-3059712 | Msa0830040:CDS | 40.0% | |
| CCGTAGACTCTCTTCTCAAA+TGG | - | chr5_4:3058444-3058463 | Msa0830040:CDS | 45.0% | |
| ! | GGTTAACGCGACCTTTTGAT+GGG | + | chr5_4:3058556-3058575 | None:intergenic | 45.0% |
| ! | GAGGGATTGGGATTTTGTGA+GGG | + | chr5_4:3058577-3058596 | None:intergenic | 45.0% |
| ! | TGAGGGATTGGGATTTTGTG+AGG | + | chr5_4:3058578-3058597 | None:intergenic | 45.0% |
| AGATGAGAGAGTGAGGGATT+GGG | + | chr5_4:3058589-3058608 | None:intergenic | 45.0% | |
| ! | TCGTCTTTGGTGATACGAGA+GGG | + | chr5_4:3058659-3058678 | None:intergenic | 45.0% |
| ! | TTCGTCTTTGGTGATACGAG+AGG | + | chr5_4:3058660-3058679 | None:intergenic | 45.0% |
| AACTGCTTCCCCAATAACCT+CGG | + | chr5_4:3058836-3058855 | None:intergenic | 45.0% | |
| TTGGAAGGAGCAGATTGAGA+AGG | - | chr5_4:3058904-3058923 | Msa0830040:CDS | 45.0% | |
| ! | GAAGGTGGCTAAGTTGAGTA+TGG | - | chr5_4:3058976-3058995 | Msa0830040:CDS | 45.0% |
| GAATGTTGTTGCTGCAATGG+AGG | - | chr5_4:3059018-3059037 | Msa0830040:CDS | 45.0% | |
| ! | GGTTTTACCGAAGAAATGGG+GGG | - | chr5_4:3059051-3059070 | Msa0830040:CDS | 45.0% |
| CTAACAACCCCCCATTTCTT+CGG | + | chr5_4:3059061-3059080 | None:intergenic | 45.0% | |
| !! | TCTTGCTTTGCCGGTTTATC+AGG | - | chr5_4:3059108-3059127 | Msa0830040:CDS | 45.0% |
| GATTGAGGGGGTTAAGGATT+TGG | - | chr5_4:3059153-3059172 | Msa0830040:CDS | 45.0% | |
| ! | GTTGGTGAAGGATGAGAAGA+AGG | - | chr5_4:3059183-3059202 | Msa0830040:CDS | 45.0% |
| !! | TGTTAGTGGTGGTGGTGATA+AGG | - | chr5_4:3059336-3059355 | Msa0830040:CDS | 45.0% |
| ! | GAGATTGGTGATATCGAGAG+TGG | - | chr5_4:3059373-3059392 | Msa0830040:CDS | 45.0% |
| ! | ATTGGTGATATCGAGAGTGG+AGG | - | chr5_4:3059376-3059395 | Msa0830040:CDS | 45.0% |
| ! | TTGGTGATATCGAGAGTGGA+GGG | - | chr5_4:3059377-3059396 | Msa0830040:CDS | 45.0% |
| GAAGTCATCCGTGAAGGAAA+AGG | - | chr5_4:3059558-3059577 | Msa0830040:CDS | 45.0% | |
| ATTGGTCAAGGATGAGGGTT+CGG | - | chr5_4:3059672-3059691 | Msa0830040:CDS | 45.0% | |
| GAGAAAGACGGATGATGTGA+AGG | - | chr5_4:3059705-3059724 | Msa0830040:CDS | 45.0% | |
| CCGTAGACTCTCTTCTCAAA+TGG | - | chr5_4:3058444-3058463 | Msa0830040:CDS | 45.0% | |
| ! | GGTTAACGCGACCTTTTGAT+GGG | + | chr5_4:3058556-3058575 | None:intergenic | 45.0% |
| ! | GAGGGATTGGGATTTTGTGA+GGG | + | chr5_4:3058577-3058596 | None:intergenic | 45.0% |
| ! | TGAGGGATTGGGATTTTGTG+AGG | + | chr5_4:3058578-3058597 | None:intergenic | 45.0% |
| AGATGAGAGAGTGAGGGATT+GGG | + | chr5_4:3058589-3058608 | None:intergenic | 45.0% | |
| ! | TCGTCTTTGGTGATACGAGA+GGG | + | chr5_4:3058659-3058678 | None:intergenic | 45.0% |
| ! | TTCGTCTTTGGTGATACGAG+AGG | + | chr5_4:3058660-3058679 | None:intergenic | 45.0% |
| AACTGCTTCCCCAATAACCT+CGG | + | chr5_4:3058836-3058855 | None:intergenic | 45.0% | |
| TTGGAAGGAGCAGATTGAGA+AGG | - | chr5_4:3058904-3058923 | Msa0830040:CDS | 45.0% | |
| ! | GAAGGTGGCTAAGTTGAGTA+TGG | - | chr5_4:3058976-3058995 | Msa0830040:CDS | 45.0% |
| GAATGTTGTTGCTGCAATGG+AGG | - | chr5_4:3059018-3059037 | Msa0830040:CDS | 45.0% | |
| ! | GGTTTTACCGAAGAAATGGG+GGG | - | chr5_4:3059051-3059070 | Msa0830040:CDS | 45.0% |
| CTAACAACCCCCCATTTCTT+CGG | + | chr5_4:3059061-3059080 | None:intergenic | 45.0% | |
| !! | TCTTGCTTTGCCGGTTTATC+AGG | - | chr5_4:3059108-3059127 | Msa0830040:CDS | 45.0% |
| GATTGAGGGGGTTAAGGATT+TGG | - | chr5_4:3059153-3059172 | Msa0830040:CDS | 45.0% | |
| ! | GTTGGTGAAGGATGAGAAGA+AGG | - | chr5_4:3059183-3059202 | Msa0830040:CDS | 45.0% |
| !! | TGTTAGTGGTGGTGGTGATA+AGG | - | chr5_4:3059336-3059355 | Msa0830040:CDS | 45.0% |
| ! | GAGATTGGTGATATCGAGAG+TGG | - | chr5_4:3059373-3059392 | Msa0830040:CDS | 45.0% |
| ! | ATTGGTGATATCGAGAGTGG+AGG | - | chr5_4:3059376-3059395 | Msa0830040:CDS | 45.0% |
| ! | TTGGTGATATCGAGAGTGGA+GGG | - | chr5_4:3059377-3059396 | Msa0830040:CDS | 45.0% |
| GAAGTCATCCGTGAAGGAAA+AGG | - | chr5_4:3059558-3059577 | Msa0830040:CDS | 45.0% | |
| ATTGGTCAAGGATGAGGGTT+CGG | - | chr5_4:3059672-3059691 | Msa0830040:CDS | 45.0% | |
| GAGAAAGACGGATGATGTGA+AGG | - | chr5_4:3059705-3059724 | Msa0830040:CDS | 45.0% | |
| ! | AGAGTCTACGGCTTTTGCGA+CGG | + | chr5_4:3058435-3058454 | None:intergenic | 50.0% |
| ! | GGGTTAACGCGACCTTTTGA+TGG | + | chr5_4:3058557-3058576 | None:intergenic | 50.0% |
| GAGATGAGAGAGTGAGGGAT+TGG | + | chr5_4:3058590-3058609 | None:intergenic | 50.0% | |
| !! | GACGGATTATCGTCCGTTTG+AGG | - | chr5_4:3058745-3058764 | Msa0830040:CDS | 50.0% |
| ! | ATCGTCCGTTTGAGGCGAAA+AGG | - | chr5_4:3058753-3058772 | Msa0830040:CDS | 50.0% |
| CCCAATAACCTCGGCAACAA+CGG | + | chr5_4:3058827-3058846 | None:intergenic | 50.0% | |
| CCGTTGTTGCCGAGGTTATT+GGG | - | chr5_4:3058824-3058843 | Msa0830040:CDS | 50.0% | |
| CGTTGTTGCCGAGGTTATTG+GGG | - | chr5_4:3058825-3058844 | Msa0830040:CDS | 50.0% | |
| TTCTGCAAATCCACCTGCAC+CGG | + | chr5_4:3058878-3058897 | None:intergenic | 50.0% | |
| TGGGACTTGTAGTGTGGTGA+AGG | - | chr5_4:3058958-3058977 | Msa0830040:CDS | 50.0% | |
| GACTTGTAGTGTGGTGAAGG+TGG | - | chr5_4:3058961-3058980 | Msa0830040:CDS | 50.0% | |
| CGAAGAAATGGGGGGTTGTT+AGG | - | chr5_4:3059059-3059078 | Msa0830040:CDS | 50.0% | |
| GTTGGAGTCTCTTGCTTTGC+CGG | - | chr5_4:3059099-3059118 | Msa0830040:CDS | 50.0% | |
| TCCGGAACAGCCTGATAAAC+CGG | + | chr5_4:3059121-3059140 | None:intergenic | 50.0% | |
| TGAGGGGGTTAAGGATTTGG+AGG | - | chr5_4:3059156-3059175 | Msa0830040:CDS | 50.0% | |
| TGATATCGAGAGTGGAGGGT+TGG | - | chr5_4:3059381-3059400 | Msa0830040:CDS | 50.0% | |
| !! | GAGGGTTGGTGAGTAAGAAG+AGG | - | chr5_4:3059395-3059414 | Msa0830040:CDS | 50.0% |
| GAAGAATAACGAAAGGGGCG+TGG | - | chr5_4:3059591-3059610 | Msa0830040:CDS | 50.0% | |
| ! | AGAGTCTACGGCTTTTGCGA+CGG | + | chr5_4:3058435-3058454 | None:intergenic | 50.0% |
| ! | GGGTTAACGCGACCTTTTGA+TGG | + | chr5_4:3058557-3058576 | None:intergenic | 50.0% |
| GAGATGAGAGAGTGAGGGAT+TGG | + | chr5_4:3058590-3058609 | None:intergenic | 50.0% | |
| !! | GACGGATTATCGTCCGTTTG+AGG | - | chr5_4:3058745-3058764 | Msa0830040:CDS | 50.0% |
| ! | ATCGTCCGTTTGAGGCGAAA+AGG | - | chr5_4:3058753-3058772 | Msa0830040:CDS | 50.0% |
| CCCAATAACCTCGGCAACAA+CGG | + | chr5_4:3058827-3058846 | None:intergenic | 50.0% | |
| CCGTTGTTGCCGAGGTTATT+GGG | - | chr5_4:3058824-3058843 | Msa0830040:CDS | 50.0% | |
| CGTTGTTGCCGAGGTTATTG+GGG | - | chr5_4:3058825-3058844 | Msa0830040:CDS | 50.0% | |
| TTCTGCAAATCCACCTGCAC+CGG | + | chr5_4:3058878-3058897 | None:intergenic | 50.0% | |
| TGGGACTTGTAGTGTGGTGA+AGG | - | chr5_4:3058958-3058977 | Msa0830040:CDS | 50.0% | |
| GACTTGTAGTGTGGTGAAGG+TGG | - | chr5_4:3058961-3058980 | Msa0830040:CDS | 50.0% | |
| CGAAGAAATGGGGGGTTGTT+AGG | - | chr5_4:3059059-3059078 | Msa0830040:CDS | 50.0% | |
| GTTGGAGTCTCTTGCTTTGC+CGG | - | chr5_4:3059099-3059118 | Msa0830040:CDS | 50.0% | |
| TCCGGAACAGCCTGATAAAC+CGG | + | chr5_4:3059121-3059140 | None:intergenic | 50.0% | |
| TGAGGGGGTTAAGGATTTGG+AGG | - | chr5_4:3059156-3059175 | Msa0830040:CDS | 50.0% | |
| TGATATCGAGAGTGGAGGGT+TGG | - | chr5_4:3059381-3059400 | Msa0830040:CDS | 50.0% | |
| !! | GAGGGTTGGTGAGTAAGAAG+AGG | - | chr5_4:3059395-3059414 | Msa0830040:CDS | 50.0% |
| GAAGAATAACGAAAGGGGCG+TGG | - | chr5_4:3059591-3059610 | Msa0830040:CDS | 50.0% | |
| ! | TACGGCTTTTGCGACGGTGT+CGG | + | chr5_4:3058429-3058448 | None:intergenic | 55.0% |
| CTGCGGAGATGAGAGAGTGA+GGG | + | chr5_4:3058595-3058614 | None:intergenic | 55.0% | |
| CTCTCTCATCTCCGCAGCAT+CGG | - | chr5_4:3058598-3058617 | Msa0830040:CDS | 55.0% | |
| GAGACACTGTTCCGATGCTG+CGG | + | chr5_4:3058612-3058631 | None:intergenic | 55.0% | |
| ! | CTATTGTGCCGTTGTTGCCG+AGG | - | chr5_4:3058816-3058835 | Msa0830040:CDS | 55.0% |
| GCCGTTGTTGCCGAGGTTAT+TGG | - | chr5_4:3058823-3058842 | Msa0830040:CDS | 55.0% | |
| GAAGAGGAAGATTCCGGTGC+AGG | - | chr5_4:3058862-3058881 | Msa0830040:CDS | 55.0% | |
| GAGGACTGGGACTTGTAGTG+TGG | - | chr5_4:3058952-3058971 | Msa0830040:CDS | 55.0% | |
| !! | TGCAATGGAGGGTGTTGTCG+AGG | - | chr5_4:3059030-3059049 | Msa0830040:CDS | 55.0% |
| ! | GCCGGTTTATCAGGCTGTTC+CGG | - | chr5_4:3059117-3059136 | Msa0830040:CDS | 55.0% |
| ! | TACGGCTTTTGCGACGGTGT+CGG | + | chr5_4:3058429-3058448 | None:intergenic | 55.0% |
| CTGCGGAGATGAGAGAGTGA+GGG | + | chr5_4:3058595-3058614 | None:intergenic | 55.0% | |
| CTCTCTCATCTCCGCAGCAT+CGG | - | chr5_4:3058598-3058617 | Msa0830040:CDS | 55.0% | |
| GAGACACTGTTCCGATGCTG+CGG | + | chr5_4:3058612-3058631 | None:intergenic | 55.0% | |
| ! | CTATTGTGCCGTTGTTGCCG+AGG | - | chr5_4:3058816-3058835 | Msa0830040:CDS | 55.0% |
| GCCGTTGTTGCCGAGGTTAT+TGG | - | chr5_4:3058823-3058842 | Msa0830040:CDS | 55.0% | |
| GAAGAGGAAGATTCCGGTGC+AGG | - | chr5_4:3058862-3058881 | Msa0830040:CDS | 55.0% | |
| GAGGACTGGGACTTGTAGTG+TGG | - | chr5_4:3058952-3058971 | Msa0830040:CDS | 55.0% | |
| !! | TGCAATGGAGGGTGTTGTCG+AGG | - | chr5_4:3059030-3059049 | Msa0830040:CDS | 55.0% |
| ! | GCCGGTTTATCAGGCTGTTC+CGG | - | chr5_4:3059117-3059136 | Msa0830040:CDS | 55.0% |
| !! | GGTGTCGGCGTTGCTGGTTA+CGG | + | chr5_4:3058414-3058433 | None:intergenic | 60.0% |
| GCTGCGGAGATGAGAGAGTG+AGG | + | chr5_4:3058596-3058615 | None:intergenic | 60.0% | |
| GAGGAAGATTCCGGTGCAGG+TGG | - | chr5_4:3058865-3058884 | Msa0830040:CDS | 60.0% | |
| !! | GGTGTCGGCGTTGCTGGTTA+CGG | + | chr5_4:3058414-3058433 | None:intergenic | 60.0% |
| GCTGCGGAGATGAGAGAGTG+AGG | + | chr5_4:3058596-3058615 | None:intergenic | 60.0% | |
| GAGGAAGATTCCGGTGCAGG+TGG | - | chr5_4:3058865-3058884 | Msa0830040:CDS | 60.0% | |
| ! | GTCGGCGTTGCTGGTTACGG+TGG | + | chr5_4:3058411-3058430 | None:intergenic | 65.0% |
| ! | CGAAAGGGGCGTGGCTGAGT+TGG | - | chr5_4:3059600-3059619 | Msa0830040:CDS | 65.0% |
| ! | GTCGGCGTTGCTGGTTACGG+TGG | + | chr5_4:3058411-3058430 | None:intergenic | 65.0% |
| ! | CGAAAGGGGCGTGGCTGAGT+TGG | - | chr5_4:3059600-3059619 | Msa0830040:CDS | 65.0% |
| !! | TGCGACGGTGTCGGCGTTGC+TGG | + | chr5_4:3058420-3058439 | None:intergenic | 70.0% |
| !! | TGCGACGGTGTCGGCGTTGC+TGG | + | chr5_4:3058420-3058439 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 3058404 | 3059759 | 3058404 | ID=Msa0830040;Name=Msa0830040 |
| chr5_4 | mRNA | 3058404 | 3059759 | 3058404 | ID=Msa0830040-mRNA-1;Parent=Msa0830040;Name=Msa0830040-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|451 |
| chr5_4 | exon | 3058404 | 3059759 | 3058404 | ID=Msa0830040-mRNA-1:exon:1097;Parent=Msa0830040-mRNA-1 |
| chr5_4 | CDS | 3058404 | 3059759 | 3058404 | ID=Msa0830040-mRNA-1:cds;Parent=Msa0830040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
