Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0974520 | XP_003618487.1 | 96.875 | 320 | 10 | 0 | 1 | 320 | 1 | 320 | 0.0 | 622 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0974520 | sp|Q84V25|ENOXE_FRAAN | 73.041 | 319 | 86 | 0 | 2 | 320 | 4 | 322 | 8.29e-162 | 456 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0974520 | G7KKH6 | 96.875 | 320 | 10 | 0 | 1 | 320 | 1 | 320 | 0.0 | 622 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0974520 | 0.818044 | 2.406848e-52 | -8.615850e-47 |
| Msa0001940 | Msa0974520 | 0.810820 | 9.532420e-51 | -8.615850e-47 |
| Msa0002580 | Msa0974520 | 0.823742 | 1.175521e-53 | -8.615850e-47 |
| Msa0005890 | Msa0974520 | 0.832240 | 1.058393e-55 | -8.615850e-47 |
| Msa0017950 | Msa0974520 | 0.810137 | 1.338602e-50 | -8.615850e-47 |
| Msa0018160 | Msa0974520 | 0.802178 | 6.347174e-49 | -8.615850e-47 |
| Msa0029970 | Msa0974520 | 0.805338 | 1.400605e-49 | -8.615850e-47 |
| Msa0036870 | Msa0974520 | 0.821467 | 3.975979e-53 | -8.615850e-47 |
| Msa0050660 | Msa0974520 | 0.812279 | 4.592028e-51 | -8.615850e-47 |
| Msa0050700 | Msa0974520 | 0.816032 | 6.816589e-52 | -8.615850e-47 |
| Msa0050790 | Msa0974520 | 0.819842 | 9.389964e-53 | -8.615850e-47 |
| Msa0071850 | Msa0974520 | 0.808028 | 3.787613e-50 | -8.615850e-47 |
| Msa0071860 | Msa0974520 | 0.819175 | 1.333228e-52 | -8.615850e-47 |
| Msa0081020 | Msa0974520 | 0.812678 | 3.757896e-51 | -8.615850e-47 |
| Msa0090400 | Msa0974520 | 0.818748 | 1.667215e-52 | -8.615850e-47 |
| Msa0094780 | Msa0974520 | 0.807039 | 6.140260e-50 | -8.615850e-47 |
| Msa0098040 | Msa0974520 | 0.808558 | 2.919332e-50 | -8.615850e-47 |
| Msa0626450 | Msa0974520 | 0.804379 | 2.222008e-49 | -8.615850e-47 |
| Msa0640200 | Msa0974520 | 0.805701 | 1.175705e-49 | -8.615850e-47 |
| Msa0664600 | Msa0974520 | 0.804576 | 2.021579e-49 | -8.615850e-47 |
| Msa0675330 | Msa0974520 | 0.807116 | 5.915034e-50 | -8.615850e-47 |
| Msa0725770 | Msa0974520 | 0.807829 | 4.174983e-50 | -8.615850e-47 |
| Msa0738340 | Msa0974520 | 0.803623 | 3.191192e-49 | -8.615850e-47 |
| Msa0738700 | Msa0974520 | 0.811088 | 8.340027e-51 | -8.615850e-47 |
| Msa0741220 | Msa0974520 | 0.838297 | 3.125854e-57 | -8.615850e-47 |
| Msa0792370 | Msa0974520 | 0.806184 | 9.304906e-50 | -8.615850e-47 |
| Msa0795870 | Msa0974520 | 0.818741 | 1.673154e-52 | -8.615850e-47 |
| Msa0817760 | Msa0974520 | 0.807328 | 5.333746e-50 | -8.615850e-47 |
| Msa0829300 | Msa0974520 | 0.832830 | 7.555880e-56 | -8.615850e-47 |
| Msa0829330 | Msa0974520 | 0.828054 | 1.112855e-54 | -8.615850e-47 |
| Msa0833650 | Msa0974520 | 0.813783 | 2.149100e-51 | -8.615850e-47 |
| Msa0835490 | Msa0974520 | 0.814785 | 1.291007e-51 | -8.615850e-47 |
| Msa0137880 | Msa0974520 | 0.805609 | 1.229268e-49 | -8.615850e-47 |
| Msa0174450 | Msa0974520 | 0.810292 | 1.239520e-50 | -8.615850e-47 |
| Msa0182190 | Msa0974520 | 0.813878 | 2.047969e-51 | -8.615850e-47 |
| Msa0182240 | Msa0974520 | 0.810986 | 8.773861e-51 | -8.615850e-47 |
| Msa0195890 | Msa0974520 | 0.806209 | 9.190425e-50 | -8.615850e-47 |
| Msa0208140 | Msa0974520 | 0.833838 | 4.237885e-56 | -8.615850e-47 |
| Msa0213030 | Msa0974520 | 0.805546 | 1.266763e-49 | -8.615850e-47 |
| Msa0225100 | Msa0974520 | 0.858082 | 1.051221e-62 | -8.615850e-47 |
| Msa0225860 | Msa0974520 | 0.838516 | 2.745563e-57 | -8.615850e-47 |
| Msa0230800 | Msa0974520 | 0.817111 | 3.906383e-52 | -8.615850e-47 |
| Msa0378720 | Msa0974520 | 0.800533 | 1.378645e-48 | -8.615850e-47 |
| Msa0428370 | Msa0974520 | 0.814769 | 1.301658e-51 | -8.615850e-47 |
| Msa0430300 | Msa0974520 | 0.811057 | 8.470456e-51 | -8.615850e-47 |
| Msa0435210 | Msa0974520 | 0.801433 | 9.025333e-49 | -8.615850e-47 |
| Msa0436910 | Msa0974520 | 0.824442 | 8.054378e-54 | -8.615850e-47 |
| Msa0474730 | Msa0974520 | 0.811103 | 8.277172e-51 | -8.615850e-47 |
| Msa0244640 | Msa0974520 | 0.815193 | 1.048108e-51 | -8.615850e-47 |
| Msa0260510 | Msa0974520 | 0.818231 | 2.183898e-52 | -8.615850e-47 |
| Msa0265850 | Msa0974520 | 0.813057 | 3.102518e-51 | -8.615850e-47 |
| Msa0266180 | Msa0974520 | 0.841690 | 4.077940e-58 | -8.615850e-47 |
| Msa0267110 | Msa0974520 | 0.818658 | 1.747165e-52 | -8.615850e-47 |
| Msa0283330 | Msa0974520 | 0.813269 | 2.788567e-51 | -8.615850e-47 |
| Msa0287740 | Msa0974520 | 0.850650 | 1.480828e-60 | -8.615850e-47 |
| Msa0292160 | Msa0974520 | 0.810375 | 1.189085e-50 | -8.615850e-47 |
| Msa0298470 | Msa0974520 | 0.800844 | 1.190820e-48 | -8.615850e-47 |
| Msa0307670 | Msa0974520 | 0.812965 | 3.250807e-51 | -8.615850e-47 |
| Msa0321620 | Msa0974520 | 0.813171 | 2.929649e-51 | -8.615850e-47 |
| Msa0330380 | Msa0974520 | 0.803066 | 4.163267e-49 | -8.615850e-47 |
| Msa0359020 | Msa0974520 | 0.806379 | 8.464607e-50 | -8.615850e-47 |
| Msa0483100 | Msa0974520 | 0.809536 | 1.802700e-50 | -8.615850e-47 |
| Msa0519750 | Msa0974520 | 0.813317 | 2.721823e-51 | -8.615850e-47 |
| Msa0519820 | Msa0974520 | 0.808824 | 2.561133e-50 | -8.615850e-47 |
| Msa0519830 | Msa0974520 | 0.808055 | 3.738093e-50 | -8.615850e-47 |
| Msa0528570 | Msa0974520 | 0.853859 | 1.808707e-61 | -8.615850e-47 |
| Msa0541300 | Msa0974520 | 0.807029 | 6.171523e-50 | -8.615850e-47 |
| Msa0543660 | Msa0974520 | 0.806453 | 8.164917e-50 | -8.615850e-47 |
| Msa0557460 | Msa0974520 | 0.838635 | 2.557311e-57 | -8.615850e-47 |
| Msa0580370 | Msa0974520 | 0.819282 | 1.260702e-52 | -8.615850e-47 |
| Msa0581470 | Msa0974520 | 0.800659 | 1.299018e-48 | -8.615850e-47 |
| Msa0583360 | Msa0974520 | -0.817409 | 3.348216e-52 | -8.615850e-47 |
| Msa0584420 | Msa0974520 | 0.812218 | 4.734307e-51 | -8.615850e-47 |
| Msa0585020 | Msa0974520 | 0.802264 | 6.093893e-49 | -8.615850e-47 |
| Msa0587620 | Msa0974520 | 0.822611 | 2.159261e-53 | -8.615850e-47 |
| Msa0597270 | Msa0974520 | 0.824305 | 8.676406e-54 | -8.615850e-47 |
| Msa0600930 | Msa0974520 | 0.812680 | 3.753242e-51 | -8.615850e-47 |
| Msa0859290 | Msa0974520 | 0.809956 | 1.464201e-50 | -8.615850e-47 |
| Msa0871880 | Msa0974520 | 0.936034 | 3.308151e-97 | -8.615850e-47 |
| Msa0899970 | Msa0974520 | 0.818515 | 1.882657e-52 | -8.615850e-47 |
| Msa0905240 | Msa0974520 | 0.950386 | 1.834355e-108 | -8.615850e-47 |
| Msa0937230 | Msa0974520 | 0.915973 | 3.111531e-85 | -8.615850e-47 |
| Msa0965080 | Msa0974520 | 0.811914 | 5.516488e-51 | -8.615850e-47 |
| Msa0965290 | Msa0974520 | 0.822060 | 2.898662e-53 | -8.615850e-47 |
| Msa0967870 | Msa0974520 | 0.852502 | 4.425475e-61 | -8.615850e-47 |
| Msa0974520 | Msa0979180 | 0.809307 | 2.018449e-50 | -8.615850e-47 |
| Msa0974520 | Msa0999680 | 0.813549 | 2.419210e-51 | -8.615850e-47 |
| Msa0974520 | Msa1019000 | 0.804888 | 1.740168e-49 | -8.615850e-47 |
| Msa0974520 | Msa1019150 | 0.815274 | 1.005522e-51 | -8.615850e-47 |
| Msa0974520 | Msa1042160 | 0.809065 | 2.274755e-50 | -8.615850e-47 |
| Msa0974520 | Msa1042190 | 0.808881 | 2.491120e-50 | -8.615850e-47 |
| Msa0974520 | Msa1044680 | 0.821619 | 3.667466e-53 | -8.615850e-47 |
| Msa0974520 | Msa1105780 | 0.807278 | 5.463962e-50 | -8.615850e-47 |
| Msa0974520 | Msa1114780 | 0.807058 | 6.084829e-50 | -8.615850e-47 |
| Msa0974520 | Msa1132840 | 0.819957 | 8.840791e-53 | -8.615850e-47 |
| Msa0974520 | Msa1147740 | 0.826209 | 3.075079e-54 | -8.615850e-47 |
| Msa0974520 | Msa1155170 | -0.822737 | 2.018615e-53 | -8.615850e-47 |
| Msa0974520 | Msa1161810 | 0.811473 | 6.878435e-51 | -8.615850e-47 |
| Msa0974520 | Msa1200890 | 0.812816 | 3.503939e-51 | -8.615850e-47 |
| Msa0974520 | Msa1208950 | 0.830253 | 3.258845e-55 | -8.615850e-47 |
| Msa0974520 | Msa1224930 | 0.809244 | 2.082359e-50 | -8.615850e-47 |
| Msa0974520 | Msa1225860 | -0.819156 | 1.346810e-52 | -8.615850e-47 |
| Msa0974520 | Msa1265650 | 0.819399 | 1.185274e-52 | -8.615850e-47 |
| Msa0974520 | Msa1303560 | 0.809693 | 1.667941e-50 | -8.615850e-47 |
| Msa0974520 | Msa1303650 | 0.813351 | 2.675342e-51 | -8.615850e-47 |
| Msa0974520 | Msa1320670 | 0.808800 | 2.591984e-50 | -8.615850e-47 |
| Msa0974520 | Msa1343430 | 0.807987 | 3.863728e-50 | -8.615850e-47 |
| Msa0974520 | Msa1372040 | 0.805773 | 1.135256e-49 | -8.615850e-47 |
| Msa0974520 | Msa1397400 | 0.808489 | 3.020190e-50 | -8.615850e-47 |
| Msa0974520 | Msa1397740 | 0.811790 | 5.869438e-51 | -8.615850e-47 |
| Msa0974520 | Msa1415540 | 0.841799 | 3.817152e-58 | -8.615850e-47 |
| Msa0974520 | Msa1420950 | 0.817911 | 2.579280e-52 | -8.615850e-47 |
| Msa0974520 | Msa1427100 | 0.813150 | 2.961259e-51 | -8.615850e-47 |
| Msa0974520 | Msa1440630 | 0.821469 | 3.972121e-53 | -8.615850e-47 |
| Msa0974520 | Msa1450100 | 0.830343 | 3.097341e-55 | -8.615850e-47 |
| Msa0974520 | Msa1454140 | 0.807039 | 6.141231e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0974520 | MtrunA17_Chr6g0453201 | 96.875 | 320 | 10 | 0 | 1 | 320 | 1 | 320 | 0.0 | 622 |
| Msa0974520 | MtrunA17_Chr6g0453191 | 92.857 | 294 | 21 | 0 | 1 | 294 | 1 | 294 | 0.0 | 522 |
| Msa0974520 | MtrunA17_Chr8g0365421 | 68.153 | 314 | 99 | 1 | 7 | 320 | 72 | 384 | 2.20e-154 | 437 |
| Msa0974520 | MtrunA17_Chr6g0466321 | 66.984 | 315 | 104 | 0 | 6 | 320 | 14 | 328 | 6.54e-148 | 419 |
| Msa0974520 | MtrunA17_Chr6g0465501 | 66.667 | 315 | 105 | 0 | 6 | 320 | 14 | 328 | 1.32e-146 | 416 |
| Msa0974520 | MtrunA17_Chr7g0228011 | 71.521 | 309 | 88 | 0 | 12 | 320 | 9 | 317 | 2.63e-146 | 414 |
| Msa0974520 | MtrunA17_Chr8g0351271 | 46.945 | 311 | 159 | 5 | 12 | 320 | 5 | 311 | 7.28e-89 | 269 |
| Msa0974520 | MtrunA17_Chr8g0351481 | 47.557 | 307 | 155 | 5 | 12 | 316 | 5 | 307 | 3.41e-88 | 267 |
| Msa0974520 | MtrunA17_Chr4g0015051 | 34.328 | 335 | 181 | 9 | 12 | 318 | 7 | 330 | 3.50e-41 | 146 |
| Msa0974520 | MtrunA17_Chr4g0014951 | 34.036 | 332 | 178 | 10 | 16 | 318 | 11 | 330 | 2.61e-39 | 141 |
| Msa0974520 | MtrunA17_Chr4g0014971 | 34.441 | 331 | 178 | 10 | 16 | 318 | 11 | 330 | 4.01e-39 | 140 |
| Msa0974520 | MtrunA17_Chr4g0015091 | 36.170 | 329 | 172 | 12 | 16 | 317 | 11 | 328 | 9.88e-39 | 139 |
| Msa0974520 | MtrunA17_Chr7g0235021 | 34.925 | 335 | 176 | 12 | 12 | 317 | 7 | 328 | 1.97e-38 | 139 |
| Msa0974520 | MtrunA17_Chr4g0014931 | 33.731 | 335 | 183 | 9 | 12 | 318 | 7 | 330 | 8.13e-38 | 137 |
| Msa0974520 | MtrunA17_Chr4g0014691 | 32.803 | 314 | 174 | 8 | 32 | 318 | 26 | 329 | 4.41e-35 | 130 |
| Msa0974520 | MtrunA17_Chr4g0014541 | 32.803 | 314 | 174 | 8 | 32 | 318 | 26 | 329 | 4.84e-35 | 130 |
| Msa0974520 | MtrunA17_Chr2g0316731 | 31.098 | 328 | 180 | 10 | 26 | 316 | 40 | 358 | 3.40e-31 | 120 |
| Msa0974520 | MtrunA17_Chr2g0281301 | 30.368 | 326 | 179 | 13 | 24 | 316 | 26 | 336 | 1.46e-26 | 107 |
| Msa0974520 | MtrunA17_Chr2g0281281 | 28.485 | 330 | 180 | 13 | 24 | 316 | 13 | 323 | 1.59e-26 | 107 |
| Msa0974520 | MtrunA17_Chr4g0045041 | 26.183 | 317 | 181 | 9 | 40 | 316 | 317 | 620 | 3.51e-19 | 88.2 |
| Msa0974520 | MtrunA17_Chr4g0045061 | 26.032 | 315 | 180 | 9 | 42 | 316 | 319 | 620 | 4.31e-19 | 87.8 |
| Msa0974520 | MtrunA17_Chr6g0465551 | 55.882 | 68 | 30 | 0 | 6 | 73 | 14 | 81 | 1.00e-18 | 79.3 |
| Msa0974520 | MtrunA17_Chr4g0015001 | 30.000 | 230 | 131 | 6 | 114 | 317 | 5 | 230 | 2.69e-17 | 79.7 |
| Msa0974520 | MtrunA17_Chr3g0128511 | 28.527 | 319 | 178 | 11 | 35 | 316 | 30 | 335 | 3.06e-14 | 72.4 |
| Msa0974520 | MtrunA17_Chr8g0385221 | 24.834 | 302 | 163 | 11 | 6 | 251 | 49 | 342 | 5.50e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0974520 | AT1G23740.1 | 63.810 | 315 | 113 | 1 | 6 | 320 | 73 | 386 | 9.31e-142 | 405 |
| Msa0974520 | AT4G13010.1 | 32.229 | 332 | 183 | 10 | 16 | 318 | 11 | 329 | 4.49e-34 | 127 |
| Msa0974520 | AT3G15090.1 | 33.852 | 257 | 156 | 8 | 1 | 251 | 22 | 270 | 7.73e-32 | 122 |
| Msa0974520 | AT4G21580.1 | 28.909 | 339 | 192 | 12 | 12 | 317 | 2 | 324 | 7.12e-26 | 105 |
| Msa0974520 | AT4G21580.3 | 28.402 | 338 | 189 | 12 | 12 | 317 | 2 | 318 | 5.48e-25 | 102 |
| Msa0974520 | AT3G56460.1 | 29.781 | 319 | 176 | 11 | 33 | 316 | 31 | 336 | 1.81e-21 | 93.6 |
| Msa0974520 | AT1G49670.1 | 26.646 | 319 | 179 | 12 | 35 | 316 | 316 | 616 | 5.55e-18 | 85.1 |
| Msa0974520 | AT1G49670.2 | 25.581 | 344 | 182 | 12 | 35 | 320 | 316 | 643 | 2.68e-17 | 83.2 |
| Msa0974520 | AT3G45770.1 | 28.179 | 291 | 181 | 9 | 11 | 284 | 45 | 324 | 2.40e-16 | 79.3 |
| Msa0974520 | AT5G61510.1 | 29.954 | 217 | 133 | 8 | 24 | 233 | 96 | 300 | 4.19e-12 | 67.0 |
Find 88 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAATTATAATAAATAAAA+AGG | 0.179274 | 6_4:+7569640 | None:intergenic |
| GCGTTGAATTTGTACTAATT+TGG | 0.190832 | 6_4:-7567263 | Msa0974520:three_prime_UTR |
| AGTTGGATCTCTTGTTATTC+AGG | 0.225112 | 6_4:-7568321 | Msa0974520:intron |
| TTGAAACCTTACTTGGAAAA+TGG | 0.226818 | 6_4:-7567442 | Msa0974520:CDS |
| GAAAATGGAAAGGGACTCTT+AGG | 0.231928 | 6_4:+7567397 | None:intergenic |
| AGACCAAGTGAAGAAATTTA+AGG | 0.233255 | 6_4:-7568579 | Msa0974520:CDS |
| TCTTAATATCAACAGGATTA+AGG | 0.239762 | 6_4:+7569091 | None:intergenic |
| GCTTCCACAGCCTGAGAAAA+TGG | 0.285159 | 6_4:+7567382 | None:intergenic |
| CTTAATACTAATAGAGCTAT+TGG | 0.294082 | 6_4:-7567349 | Msa0974520:CDS |
| GCTTGGGTTTACTCTCAATA+TGG | 0.324385 | 6_4:-7569204 | Msa0974520:CDS |
| TCAACAAAACTCAAATTTGA+TGG | 0.328083 | 6_4:+7568446 | None:intergenic |
| GGGATAGCTGGTGGAGTTCC+AGG | 0.335884 | 6_4:+7567502 | None:intergenic |
| AAATCTCTACTTGTTCTTGC+AGG | 0.339592 | 6_4:-7568353 | Msa0974520:CDS |
| AATATTATAAATCATCGATT+TGG | 0.340122 | 6_4:-7567067 | Msa0974520:three_prime_UTR |
| CTACTTGTTCTTGCAGGTGC+TGG | 0.342796 | 6_4:-7568347 | Msa0974520:CDS |
| AAGGTTGGAGATGAAGTTTA+TGG | 0.348171 | 6_4:-7568560 | Msa0974520:CDS |
| AATGACTATTATTTATAGAT+AGG | 0.351619 | 6_4:+7569363 | None:intergenic |
| AATCAAGCTCATATATTTCA+TGG | 0.353521 | 6_4:-7567285 | Msa0974520:three_prime_UTR |
| CCACAAGTTATAAATATTCA+TGG | 0.355157 | 6_4:-7567129 | Msa0974520:three_prime_UTR |
| TGGCAAAGTGAAACCAATAT+TGG | 0.356227 | 6_4:-7567422 | Msa0974520:CDS |
| CAATGCATGAAGATGACTTT+GGG | 0.358930 | 6_4:+7569448 | None:intergenic |
| CTTAATATCAACAGGATTAA+GGG | 0.365726 | 6_4:+7569092 | None:intergenic |
| TTAATCCTGTTGATATTAAG+AGG | 0.366846 | 6_4:-7569089 | Msa0974520:CDS |
| GGACTCTTAGGGTCCAATAT+TGG | 0.387268 | 6_4:+7567409 | None:intergenic |
| CAAGTTCATGAAGTGACTTT+GGG | 0.397238 | 6_4:+7569473 | None:intergenic |
| GGGTGTGGTGTAGGGACATT+AGG | 0.399291 | 6_4:+7569153 | None:intergenic |
| AGTATTCATGCTCATGGAAT+GGG | 0.401418 | 6_4:+7567310 | None:intergenic |
| ATGAGCACTTGATCTTCTCT+AGG | 0.411783 | 6_4:+7569132 | None:intergenic |
| TCAAGTTCATGAAGTGACTT+TGG | 0.414614 | 6_4:+7569472 | None:intergenic |
| CAACCTTAAATTTCTTCACT+TGG | 0.416756 | 6_4:+7568576 | None:intergenic |
| TCCATCTCATACAAAAGCTT+GGG | 0.417415 | 6_4:-7569220 | Msa0974520:CDS |
| GAGGGCTCTTGGTCATTTCA+AGG | 0.427218 | 6_4:-7569070 | Msa0974520:CDS |
| CTTCTCTAGGGTGTGGTGTA+GGG | 0.431980 | 6_4:+7569145 | None:intergenic |
| CTTGCAGGTGCTGGAGGAGT+TGG | 0.436742 | 6_4:-7568338 | Msa0974520:CDS |
| GTAATAAATCTCGAAGAGAT+AGG | 0.438575 | 6_4:-7567209 | Msa0974520:three_prime_UTR |
| TCTTCTCTAGGGTGTGGTGT+AGG | 0.438979 | 6_4:+7569144 | None:intergenic |
| TTAATACTAATAGAGCTATT+GGG | 0.439543 | 6_4:-7567348 | Msa0974520:CDS |
| GAGGAAATTGGGAGCAGACT+TGG | 0.439997 | 6_4:-7567777 | Msa0974520:CDS |
| TTCCATCTCATACAAAAGCT+TGG | 0.442056 | 6_4:-7569221 | Msa0974520:CDS |
| AGAGAAATTGAAACCTTACT+TGG | 0.445997 | 6_4:-7567449 | Msa0974520:CDS |
| TAAGCAGTAATTATTGCTAA+AGG | 0.453400 | 6_4:+7568410 | None:intergenic |
| GCAATAATTACTGCTTATCA+AGG | 0.453809 | 6_4:-7568404 | Msa0974520:CDS |
| AAGCAGTAATTATTGCTAAA+GGG | 0.461547 | 6_4:+7568411 | None:intergenic |
| AGAGCCCTCTTAATATCAAC+AGG | 0.464124 | 6_4:+7569084 | None:intergenic |
| CCATCTGAAGTGAGTAAGAA+AGG | 0.465859 | 6_4:+7567481 | None:intergenic |
| CCTTTCTTACTCACTTCAGA+TGG | 0.482864 | 6_4:-7567481 | Msa0974520:CDS |
| GCAATGCATGAAGATGACTT+TGG | 0.486421 | 6_4:+7569447 | None:intergenic |
| CCATGAATATTTATAACTTG+TGG | 0.493245 | 6_4:+7567129 | None:intergenic |
| ATGATCACTTTGCTACTAAG+AGG | 0.493924 | 6_4:+7569261 | None:intergenic |
| GTGAGTAAGAAAGGGATAGC+TGG | 0.494651 | 6_4:+7567490 | None:intergenic |
| CTTGTTCTTGCAGGTGCTGG+AGG | 0.496360 | 6_4:-7568344 | Msa0974520:CDS |
| TCTTAGTAGCAAAGTGATCA+TGG | 0.500602 | 6_4:-7569259 | Msa0974520:exon |
| GTTGATATTAAGAGGGCTCT+TGG | 0.500705 | 6_4:-7569081 | Msa0974520:CDS |
| GCTGGTGTGGTGGTTAGTGT+TGG | 0.504039 | 6_4:-7568602 | Msa0974520:CDS |
| GAGTATTCATGCTCATGGAA+TGG | 0.506512 | 6_4:+7567309 | None:intergenic |
| AGCTCTATTAGTATTAAGAT+AGG | 0.511118 | 6_4:+7567354 | None:intergenic |
| GCAGTGAAGGCTGCCAATGA+AGG | 0.527533 | 6_4:-7567550 | Msa0974520:CDS |
| GATTAGAGTATTCATGCTCA+TGG | 0.531707 | 6_4:+7567304 | None:intergenic |
| TGAGCACTTGATCTTCTCTA+GGG | 0.532012 | 6_4:+7569133 | None:intergenic |
| TATAATGTTGAACTTTGTGT+TGG | 0.535951 | 6_4:+7569315 | None:intergenic |
| TGATAGTGAGAGGGCAGTGA+AGG | 0.544316 | 6_4:-7567563 | Msa0974520:CDS |
| ACTTGATCTTCTCTAGGGTG+TGG | 0.546580 | 6_4:+7569138 | None:intergenic |
| CAAGTGAAGAAATTTAAGGT+TGG | 0.546713 | 6_4:-7568575 | Msa0974520:CDS |
| AGTAAGAAAGGGATAGCTGG+TGG | 0.548465 | 6_4:+7567493 | None:intergenic |
| CATCTGAAGTGAGTAAGAAA+GGG | 0.550733 | 6_4:+7567482 | None:intergenic |
| AATAGAAACCTTACTGGCAA+AGG | 0.550875 | 6_4:+7569036 | None:intergenic |
| ATTACAAAACAGAATGCTCC+TGG | 0.565613 | 6_4:-7569512 | Msa0974520:five_prime_UTR |
| ACACCAGCTACATCATATCC+TGG | 0.567906 | 6_4:+7568617 | None:intergenic |
| GTGCCAGGATATGATGTAGC+TGG | 0.572325 | 6_4:-7568620 | Msa0974520:CDS |
| GGTGGTGTGAAGACTGTGCC+AGG | 0.575981 | 6_4:-7568635 | Msa0974520:intron |
| ACAGCCTGAGAAAATGGAAA+GGG | 0.579911 | 6_4:+7567388 | None:intergenic |
| TAATCCTGTTGATATTAAGA+GGG | 0.592527 | 6_4:-7569088 | Msa0974520:CDS |
| CTTGGCAATTGATTATACAA+AGG | 0.607180 | 6_4:-7567759 | Msa0974520:CDS |
| CACAGCCTGAGAAAATGGAA+AGG | 0.610247 | 6_4:+7567387 | None:intergenic |
| AGAAGATCAAGTGCTCATCA+AGG | 0.612803 | 6_4:-7569127 | Msa0974520:CDS |
| GGGAGCAATCTCATTCAACC+AGG | 0.615065 | 6_4:+7569494 | None:intergenic |
| AGGATATGATGTAGCTGGTG+TGG | 0.622214 | 6_4:-7568615 | Msa0974520:CDS |
| GTGAAGGCTGCCAATGAAGG+AGG | 0.627985 | 6_4:-7567547 | Msa0974520:CDS |
| AAAATGGAAAGGGACTCTTA+GGG | 0.647115 | 6_4:+7567398 | None:intergenic |
| AAGTTCATGAAGTGACTTTG+GGG | 0.651070 | 6_4:+7569474 | None:intergenic |
| AATGCATGAAGATGACTTTG+GGG | 0.651359 | 6_4:+7569449 | None:intergenic |
| GTATTCATGCTCATGGAATG+GGG | 0.667275 | 6_4:+7567311 | None:intergenic |
| GTTGTGACAATATTACCACC+TGG | 0.669517 | 6_4:-7567520 | Msa0974520:CDS |
| ATATGATGTAGCTGGTGTGG+TGG | 0.678454 | 6_4:-7568612 | Msa0974520:CDS |
| AAAATAATAATGAAATGACA+TGG | 0.680118 | 6_4:-7567161 | Msa0974520:three_prime_UTR |
| ACTAACTGAAAAGTTTGATG+TGG | 0.682063 | 6_4:-7567723 | Msa0974520:CDS |
| GATGTGGTGTATGATGCAGT+AGG | 0.683614 | 6_4:-7567707 | Msa0974520:intron |
| ATAGCTGGTGGAGTTCCAGG+TGG | 0.759816 | 6_4:+7567505 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTATAATAAATAAAA+AGG | + | chr6_4:7567077-7567096 | None:intergenic | 0.0% |
| !! | AAATTATTTAATTACACTAA+CGG | + | chr6_4:7567874-7567893 | None:intergenic | 10.0% |
| !!! | TAATTAAATAATTTTTACAC+CGG | - | chr6_4:7567880-7567899 | Msa0974520:intron | 10.0% |
| !! | AATGACTATTATTTATAGAT+AGG | + | chr6_4:7567354-7567373 | None:intergenic | 15.0% |
| !! | AGAGGAAAAAATATATAAAA+GGG | + | chr6_4:7567438-7567457 | None:intergenic | 15.0% |
| !! | AAGAGGAAAAAATATATAAA+AGG | + | chr6_4:7567439-7567458 | None:intergenic | 15.0% |
| !! | AATATAAATGAAAACTTCTA+CGG | + | chr6_4:7567758-7567777 | None:intergenic | 15.0% |
| !!! | AAACAAAGAATTTTTTTTAC+AGG | + | chr6_4:7567787-7567806 | None:intergenic | 15.0% |
| !!! | AATGTTCATCTTATTTATTA+CGG | + | chr6_4:7568614-7568633 | None:intergenic | 15.0% |
| !! | CATAATACAACATATTAATA+AGG | + | chr6_4:7569058-7569077 | None:intergenic | 15.0% |
| !!! | GTCATTTCATTATTATTTTT+TGG | + | chr6_4:7569552-7569571 | None:intergenic | 15.0% |
| !! | AAAATAATAATGAAATGACA+TGG | - | chr6_4:7569553-7569572 | Msa0974520:intron | 15.0% |
| !!! | TTCATAACTTTTAGTCTAAT+TGG | - | chr6_4:7567147-7567166 | Msa0974520:three_prime_UTR | 20.0% |
| !! | AAAACATTATTTGTTTGCAA+CGG | + | chr6_4:7567814-7567833 | None:intergenic | 20.0% |
| !! | TTAATACTAATAGAGCTATT+GGG | - | chr6_4:7569366-7569385 | Msa0974520:five_prime_UTR | 20.0% |
| ! | GTCTAATTGGTAGAATATAT+TGG | - | chr6_4:7567160-7567179 | Msa0974520:three_prime_UTR | 25.0% |
| ! | TATAATGTTGAACTTTGTGT+TGG | + | chr6_4:7567402-7567421 | None:intergenic | 25.0% |
| ! | CTTAATATCAACAGGATTAA+GGG | + | chr6_4:7567625-7567644 | None:intergenic | 25.0% |
| ! | TCTTAATATCAACAGGATTA+AGG | + | chr6_4:7567626-7567645 | None:intergenic | 25.0% |
| ! | TTAATCCTGTTGATATTAAG+AGG | - | chr6_4:7567625-7567644 | Msa0974520:intron | 25.0% |
| ! | TAATCCTGTTGATATTAAGA+GGG | - | chr6_4:7567626-7567645 | Msa0974520:intron | 25.0% |
| ! | CTTGAAATTTAAGTCATAGA+TGG | + | chr6_4:7567705-7567724 | None:intergenic | 25.0% |
| !! | TCTAAAATCACACTTATGAT+TGG | - | chr6_4:7567958-7567977 | Msa0974520:intron | 25.0% |
| !! | TATGTTTGTGAGTTTCATTT+TGG | + | chr6_4:7568021-7568040 | None:intergenic | 25.0% |
| ! | TTACACAATCCAAAAACTAT+TGG | - | chr6_4:7568196-7568215 | Msa0974520:intron | 25.0% |
| ! | TCAACAAAACTCAAATTTGA+TGG | + | chr6_4:7568271-7568290 | None:intergenic | 25.0% |
| ! | AAGCAGTAATTATTGCTAAA+GGG | + | chr6_4:7568306-7568325 | None:intergenic | 25.0% |
| ! | TAAGCAGTAATTATTGCTAA+AGG | + | chr6_4:7568307-7568326 | None:intergenic | 25.0% |
| !! | TTCTAAAGATACTCTATACT+AGG | - | chr6_4:7568429-7568448 | Msa0974520:CDS | 25.0% |
| ! | GTTCTAATCAGAAATATAAC+AGG | - | chr6_4:7568533-7568552 | Msa0974520:CDS | 25.0% |
| ! | ATTGAGCAATGAATAAGTTA+AGG | + | chr6_4:7568765-7568784 | None:intergenic | 25.0% |
| ! | ATTCATTGCTCAATATAAGT+TGG | - | chr6_4:7568771-7568790 | Msa0974520:intron | 25.0% |
| !! | TGTAGTATTTTGTCATCTAA+TGG | - | chr6_4:7568819-7568838 | Msa0974520:intron | 25.0% |
| !! | TGGAATGCAATTATTTGTTT+TGG | - | chr6_4:7568839-7568858 | Msa0974520:intron | 25.0% |
| !!! | CAACAAAACTTGATTTTTTG+AGG | - | chr6_4:7568918-7568937 | Msa0974520:intron | 25.0% |
| !!! | ACTTGATTTTTTGAGGAAAT+TGG | - | chr6_4:7568925-7568944 | Msa0974520:intron | 25.0% |
| !!! | CTTGATTTTTTGAGGAAATT+GGG | - | chr6_4:7568926-7568945 | Msa0974520:intron | 25.0% |
| ! | AGCTCTATTAGTATTAAGAT+AGG | + | chr6_4:7569363-7569382 | None:intergenic | 25.0% |
| ! | CTTAATACTAATAGAGCTAT+TGG | - | chr6_4:7569365-7569384 | Msa0974520:five_prime_UTR | 25.0% |
| ! | AATCAAGCTCATATATTTCA+TGG | - | chr6_4:7569429-7569448 | Msa0974520:five_prime_UTR | 25.0% |
| ! | CCATGAATATTTATAACTTG+TGG | + | chr6_4:7569588-7569607 | None:intergenic | 25.0% |
| ! | CCACAAGTTATAAATATTCA+TGG | - | chr6_4:7569585-7569604 | Msa0974520:five_prime_UTR | 25.0% |
| AGACCAAGTGAAGAAATTTA+AGG | - | chr6_4:7568135-7568154 | Msa0974520:intron | 30.0% | |
| CAACCTTAAATTTCTTCACT+TGG | + | chr6_4:7568141-7568160 | None:intergenic | 30.0% | |
| ! | CAAGTGAAGAAATTTAAGGT+TGG | - | chr6_4:7568139-7568158 | Msa0974520:intron | 30.0% |
| !! | GACAAAGTACCAATAGTTTT+TGG | + | chr6_4:7568208-7568227 | None:intergenic | 30.0% |
| GCAATAATTACTGCTTATCA+AGG | - | chr6_4:7568310-7568329 | Msa0974520:intron | 30.0% | |
| ! | GAAAGAGTTGAATTTTCTTC+TGG | - | chr6_4:7568337-7568356 | Msa0974520:CDS | 30.0% |
| TTCTGGTCAATCTTTAGTTA+AGG | + | chr6_4:7568577-7568596 | None:intergenic | 30.0% | |
| AATTGTTTGGAGAATCTGTT+TGG | + | chr6_4:7568739-7568758 | None:intergenic | 30.0% | |
| TAAGTTAAGGACGAATTGTT+TGG | + | chr6_4:7568752-7568771 | None:intergenic | 30.0% | |
| CTTGGCAATTGATTATACAA+AGG | - | chr6_4:7568955-7568974 | Msa0974520:intron | 30.0% | |
| ACTAACTGAAAAGTTTGATG+TGG | - | chr6_4:7568991-7569010 | Msa0974520:intron | 30.0% | |
| ! | AAAAATAGGTGATAGTGAGA+GGG | - | chr6_4:7569142-7569161 | Msa0974520:CDS | 30.0% |
| AGAGAAATTGAAACCTTACT+TGG | - | chr6_4:7569265-7569284 | Msa0974520:five_prime_UTR | 30.0% | |
| TTGAAACCTTACTTGGAAAA+TGG | - | chr6_4:7569272-7569291 | Msa0974520:five_prime_UTR | 30.0% | |
| GCGTTGAATTTGTACTAATT+TGG | - | chr6_4:7569451-7569470 | Msa0974520:five_prime_UTR | 30.0% | |
| GTAATAAATCTCGAAGAGAT+AGG | - | chr6_4:7569505-7569524 | Msa0974520:five_prime_UTR | 30.0% | |
| TTTGTAATGTTCCCTCAACT+TGG | + | chr6_4:7567190-7567209 | None:intergenic | 35.0% | |
| ATTACAAAACAGAATGCTCC+TGG | - | chr6_4:7567202-7567221 | Msa0974520:three_prime_UTR | 35.0% | |
| AAGTTCATGAAGTGACTTTG+GGG | + | chr6_4:7567243-7567262 | None:intergenic | 35.0% | |
| CAAGTTCATGAAGTGACTTT+GGG | + | chr6_4:7567244-7567263 | None:intergenic | 35.0% | |
| TCAAGTTCATGAAGTGACTT+TGG | + | chr6_4:7567245-7567264 | None:intergenic | 35.0% | |
| AATGCATGAAGATGACTTTG+GGG | + | chr6_4:7567268-7567287 | None:intergenic | 35.0% | |
| CAATGCATGAAGATGACTTT+GGG | + | chr6_4:7567269-7567288 | None:intergenic | 35.0% | |
| ATGATCACTTTGCTACTAAG+AGG | + | chr6_4:7567456-7567475 | None:intergenic | 35.0% | |
| TCTTAGTAGCAAAGTGATCA+TGG | - | chr6_4:7567455-7567474 | Msa0974520:CDS | 35.0% | |
| TTCCATCTCATACAAAAGCT+TGG | - | chr6_4:7567493-7567512 | Msa0974520:CDS | 35.0% | |
| TCCATCTCATACAAAAGCTT+GGG | - | chr6_4:7567494-7567513 | Msa0974520:CDS | 35.0% | |
| AATAGAAACCTTACTGGCAA+AGG | + | chr6_4:7567681-7567700 | None:intergenic | 35.0% | |
| GATGGTAATAGAAACCTTAC+TGG | + | chr6_4:7567687-7567706 | None:intergenic | 35.0% | |
| !! | GTTTCATTTTGGTACCTTGT+TGG | + | chr6_4:7568010-7568029 | None:intergenic | 35.0% |
| !!! | TTTTTTCTTCTTCGTTTGCG+TGG | - | chr6_4:7568058-7568077 | Msa0974520:intron | 35.0% |
| AAGGTTGGAGATGAAGTTTA+TGG | - | chr6_4:7568154-7568173 | Msa0974520:intron | 35.0% | |
| AAATCTCTACTTGTTCTTGC+AGG | - | chr6_4:7568361-7568380 | Msa0974520:CDS | 35.0% | |
| !! | AGTTGGATCTCTTGTTATTC+AGG | - | chr6_4:7568393-7568412 | Msa0974520:CDS | 35.0% |
| ! | TTCTCTTTTCTTGGGAACAA+GGG | + | chr6_4:7568488-7568507 | None:intergenic | 35.0% |
| ! | TAACCAGGTTCTCTTTTCTT+GGG | + | chr6_4:7568496-7568515 | None:intergenic | 35.0% |
| ! | TTAACCAGGTTCTCTTTTCT+TGG | + | chr6_4:7568497-7568516 | None:intergenic | 35.0% |
| AAAGAGAACCTGGTTAAAGT+CGG | - | chr6_4:7568500-7568519 | Msa0974520:CDS | 35.0% | |
| !! | TTTTTAGTCCGACTTTAACC+AGG | + | chr6_4:7568511-7568530 | None:intergenic | 35.0% |
| CGGATTTACTACTTATCTTC+TGG | + | chr6_4:7568594-7568613 | None:intergenic | 35.0% | |
| !!! | ATTACCAAGGTCACTTTTCT+CGG | + | chr6_4:7568659-7568678 | None:intergenic | 35.0% |
| TGGTTGGAACAATCTTTAGT+CGG | + | chr6_4:7568712-7568731 | None:intergenic | 35.0% | |
| ! | CAAAAATAGGTGATAGTGAG+AGG | - | chr6_4:7569141-7569160 | Msa0974520:CDS | 35.0% |
| ! | CATCTGAAGTGAGTAAGAAA+GGG | + | chr6_4:7569235-7569254 | None:intergenic | 35.0% |
| !!! | ACTTTGCCATTTTCCAAGTA+AGG | + | chr6_4:7569281-7569300 | None:intergenic | 35.0% |
| TGGCAAAGTGAAACCAATAT+TGG | - | chr6_4:7569292-7569311 | Msa0974520:five_prime_UTR | 35.0% | |
| AAAATGGAAAGGGACTCTTA+GGG | + | chr6_4:7569319-7569338 | None:intergenic | 35.0% | |
| AGTATTCATGCTCATGGAAT+GGG | + | chr6_4:7569407-7569426 | None:intergenic | 35.0% | |
| ! | GATTAGAGTATTCATGCTCA+TGG | + | chr6_4:7569413-7569432 | None:intergenic | 35.0% |
| TATATTGGAGAGCCAAGTTG+AGG | - | chr6_4:7567175-7567194 | Msa0974520:three_prime_UTR | 40.0% | |
| ! | ATATTGGAGAGCCAAGTTGA+GGG | - | chr6_4:7567176-7567195 | Msa0974520:three_prime_UTR | 40.0% |
| GCAATGCATGAAGATGACTT+TGG | + | chr6_4:7567270-7567289 | None:intergenic | 40.0% | |
| ! | ACCCAAGCTTTTGTATGAGA+TGG | + | chr6_4:7567498-7567517 | None:intergenic | 40.0% |
| GCTTGGGTTTACTCTCAATA+TGG | - | chr6_4:7567510-7567529 | Msa0974520:CDS | 40.0% | |
| TGAGCACTTGATCTTCTCTA+GGG | + | chr6_4:7567584-7567603 | None:intergenic | 40.0% | |
| ATGAGCACTTGATCTTCTCT+AGG | + | chr6_4:7567585-7567604 | None:intergenic | 40.0% | |
| AGAAGATCAAGTGCTCATCA+AGG | - | chr6_4:7567587-7567606 | Msa0974520:intron | 40.0% | |
| AGAGCCCTCTTAATATCAAC+AGG | + | chr6_4:7567633-7567652 | None:intergenic | 40.0% | |
| GTTGATATTAAGAGGGCTCT+TGG | - | chr6_4:7567633-7567652 | Msa0974520:intron | 40.0% | |
| ! | GATTGGTCGTAGTTTCTTGA+CGG | - | chr6_4:7567975-7567994 | Msa0974520:intron | 40.0% |
| ! | GTTCTCTTTTCTTGGGAACA+AGG | + | chr6_4:7568489-7568508 | None:intergenic | 40.0% |
| !!! | TTACCAAGGTCACTTTTCTC+GGG | + | chr6_4:7568658-7568677 | None:intergenic | 40.0% |
| ! | AAGTGACCTTGGTAATCTGT+AGG | - | chr6_4:7568663-7568682 | Msa0974520:intron | 40.0% |
| GTCAAACCTACAGATTACCA+AGG | + | chr6_4:7568672-7568691 | None:intergenic | 40.0% | |
| GTCGGACTTTACTTATCTTC+TGG | + | chr6_4:7568694-7568713 | None:intergenic | 40.0% | |
| !! | GAATCTGTTTGGTTTCTGGT+TGG | + | chr6_4:7568728-7568747 | None:intergenic | 40.0% |
| ! | TGGAGAATCTGTTTGGTTTC+TGG | + | chr6_4:7568732-7568751 | None:intergenic | 40.0% |
| AGATGCCTCAAAAACATGCT+TGG | + | chr6_4:7568876-7568895 | None:intergenic | 40.0% | |
| ! | CACAACTTTTCCTCCTTCAT+TGG | + | chr6_4:7569180-7569199 | None:intergenic | 40.0% |
| GTTGTGACAATATTACCACC+TGG | - | chr6_4:7569194-7569213 | Msa0974520:CDS | 40.0% | |
| ! | CCATCTGAAGTGAGTAAGAA+AGG | + | chr6_4:7569236-7569255 | None:intergenic | 40.0% |
| CCTTTCTTACTCACTTCAGA+TGG | - | chr6_4:7569233-7569252 | Msa0974520:CDS | 40.0% | |
| GAAAATGGAAAGGGACTCTT+AGG | + | chr6_4:7569320-7569339 | None:intergenic | 40.0% | |
| ACAGCCTGAGAAAATGGAAA+GGG | + | chr6_4:7569329-7569348 | None:intergenic | 40.0% | |
| GTATTCATGCTCATGGAATG+GGG | + | chr6_4:7569406-7569425 | None:intergenic | 40.0% | |
| GAGTATTCATGCTCATGGAA+TGG | + | chr6_4:7569408-7569427 | None:intergenic | 40.0% | |
| !! | ACTTGATCTTCTCTAGGGTG+TGG | + | chr6_4:7567579-7567598 | None:intergenic | 45.0% |
| TTGACTCTCCTTTGCCAGTA+AGG | - | chr6_4:7567670-7567689 | Msa0974520:intron | 45.0% | |
| TACGGTACACTCGCAAATTG+AGG | + | chr6_4:7567740-7567759 | None:intergenic | 45.0% | |
| ACCGGCAATCTAATGCAATC+AGG | - | chr6_4:7567898-7567917 | Msa0974520:intron | 45.0% | |
| GCCTGATTGCATTAGATTGC+CGG | + | chr6_4:7567902-7567921 | None:intergenic | 45.0% | |
| TTTCTTCTTCGTTTGCGTGG+TGG | - | chr6_4:7568061-7568080 | Msa0974520:intron | 45.0% | |
| ACACCAGCTACATCATATCC+TGG | + | chr6_4:7568100-7568119 | None:intergenic | 45.0% | |
| AGGATATGATGTAGCTGGTG+TGG | - | chr6_4:7568099-7568118 | Msa0974520:intron | 45.0% | |
| ATATGATGTAGCTGGTGTGG+TGG | - | chr6_4:7568102-7568121 | Msa0974520:intron | 45.0% | |
| GTTCCCAAGAAAAGAGAACC+TGG | - | chr6_4:7568490-7568509 | Msa0974520:CDS | 45.0% | |
| TTTCCCGAGAAAAGTGACCT+TGG | - | chr6_4:7568652-7568671 | Msa0974520:intron | 45.0% | |
| !! | GCTAGCCAAGCATGTTTTTG+AGG | - | chr6_4:7568868-7568887 | Msa0974520:intron | 45.0% |
| GATGTGGTGTATGATGCAGT+AGG | - | chr6_4:7569007-7569026 | Msa0974520:intron | 45.0% | |
| AGTAAGAAAGGGATAGCTGG+TGG | + | chr6_4:7569224-7569243 | None:intergenic | 45.0% | |
| GTGAGTAAGAAAGGGATAGC+TGG | + | chr6_4:7569227-7569246 | None:intergenic | 45.0% | |
| GGACTCTTAGGGTCCAATAT+TGG | + | chr6_4:7569308-7569327 | None:intergenic | 45.0% | |
| ! | GAGTCCCTTTCCATTTTCTC+AGG | - | chr6_4:7569322-7569341 | Msa0974520:five_prime_UTR | 45.0% |
| CACAGCCTGAGAAAATGGAA+AGG | + | chr6_4:7569330-7569349 | None:intergenic | 45.0% | |
| ! | CTTTCCATTTTCTCAGGCTG+TGG | - | chr6_4:7569328-7569347 | Msa0974520:five_prime_UTR | 45.0% |
| !! | TGAAATAAAAAATATTAAAT+AGG | + | chr6_4:7569123-7569142 | None:intergenic | 5.0% |
| !!! | ATATTTTTTATTTCAAAAAT+AGG | - | chr6_4:7569128-7569147 | Msa0974520:CDS | 5.0% |
| GGGAGCAATCTCATTCAACC+AGG | + | chr6_4:7567223-7567242 | None:intergenic | 50.0% | |
| !! | CTTCTCTAGGGTGTGGTGTA+GGG | + | chr6_4:7567572-7567591 | None:intergenic | 50.0% |
| !! | TCTTCTCTAGGGTGTGGTGT+AGG | + | chr6_4:7567573-7567592 | None:intergenic | 50.0% |
| GAGGGCTCTTGGTCATTTCA+AGG | - | chr6_4:7567644-7567663 | Msa0974520:intron | 50.0% | |
| GACGGCGTATAACACCAACA+AGG | - | chr6_4:7567993-7568012 | Msa0974520:intron | 50.0% | |
| GTGCCAGGATATGATGTAGC+TGG | - | chr6_4:7568094-7568113 | Msa0974520:intron | 50.0% | |
| CTACTTGTTCTTGCAGGTGC+TGG | - | chr6_4:7568367-7568386 | Msa0974520:CDS | 50.0% | |
| GAGGAAATTGGGAGCAGACT+TGG | - | chr6_4:7568937-7568956 | Msa0974520:intron | 50.0% | |
| ! | TGATAGTGAGAGGGCAGTGA+AGG | - | chr6_4:7569151-7569170 | Msa0974520:CDS | 50.0% |
| GCTTCCACAGCCTGAGAAAA+TGG | + | chr6_4:7569335-7569354 | None:intergenic | 50.0% | |
| GGGTGTGGTGTAGGGACATT+AGG | + | chr6_4:7567564-7567583 | None:intergenic | 55.0% | |
| GCTGGTGTGGTGGTTAGTGT+TGG | - | chr6_4:7568112-7568131 | Msa0974520:intron | 55.0% | |
| !! | CTTGTTCTTGCAGGTGCTGG+AGG | - | chr6_4:7568370-7568389 | Msa0974520:CDS | 55.0% |
| GCAGTGAAGGCTGCCAATGA+AGG | - | chr6_4:7569164-7569183 | Msa0974520:CDS | 55.0% | |
| GTGAAGGCTGCCAATGAAGG+AGG | - | chr6_4:7569167-7569186 | Msa0974520:CDS | 55.0% | |
| ATAGCTGGTGGAGTTCCAGG+TGG | + | chr6_4:7569212-7569231 | None:intergenic | 55.0% | |
| GGTGGTGTGAAGACTGTGCC+AGG | - | chr6_4:7568079-7568098 | Msa0974520:intron | 60.0% | |
| !! | CTTGCAGGTGCTGGAGGAGT+TGG | - | chr6_4:7568376-7568395 | Msa0974520:CDS | 60.0% |
| GGGATAGCTGGTGGAGTTCC+AGG | + | chr6_4:7569215-7569234 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 7567067 | 7569669 | 7567067 | ID=Msa0974520;Name=Msa0974520 |
| chr6_4 | mRNA | 7567067 | 7569669 | 7567067 | ID=Msa0974520-mRNA-1;Parent=Msa0974520;Name=Msa0974520-mRNA-1;_AED=0.02;_eAED=0.02;_QI=372|1|1|1|0.75|0.6|5|254|320 |
| chr6_4 | exon | 7567067 | 7567586 | 7567067 | ID=Msa0974520-mRNA-1:exon:2916;Parent=Msa0974520-mRNA-1 |
| chr6_4 | exon | 7567708 | 7567867 | 7567708 | ID=Msa0974520-mRNA-1:exon:2915;Parent=Msa0974520-mRNA-1 |
| chr6_4 | exon | 7568322 | 7568645 | 7568322 | ID=Msa0974520-mRNA-1:exon:2914;Parent=Msa0974520-mRNA-1 |
| chr6_4 | exon | 7569050 | 7569532 | 7569050 | ID=Msa0974520-mRNA-1:exon:2913;Parent=Msa0974520-mRNA-1 |
| chr6_4 | exon | 7569568 | 7569669 | 7569568 | ID=Msa0974520-mRNA-1:exon:2912;Parent=Msa0974520-mRNA-1 |
| chr6_4 | five_prime_UTR | 7569568 | 7569669 | 7569568 | ID=Msa0974520-mRNA-1:five_prime_utr;Parent=Msa0974520-mRNA-1 |
| chr6_4 | five_prime_UTR | 7569263 | 7569532 | 7569263 | ID=Msa0974520-mRNA-1:five_prime_utr;Parent=Msa0974520-mRNA-1 |
| chr6_4 | CDS | 7569050 | 7569262 | 7569050 | ID=Msa0974520-mRNA-1:cds;Parent=Msa0974520-mRNA-1 |
| chr6_4 | CDS | 7568322 | 7568645 | 7568322 | ID=Msa0974520-mRNA-1:cds;Parent=Msa0974520-mRNA-1 |
| chr6_4 | CDS | 7567708 | 7567867 | 7567708 | ID=Msa0974520-mRNA-1:cds;Parent=Msa0974520-mRNA-1 |
| chr6_4 | CDS | 7567321 | 7567586 | 7567321 | ID=Msa0974520-mRNA-1:cds;Parent=Msa0974520-mRNA-1 |
| chr6_4 | three_prime_UTR | 7567067 | 7567320 | 7567067 | ID=Msa0974520-mRNA-1:three_prime_utr;Parent=Msa0974520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
