Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1033400 | XP_003624961.2 | 82.869 | 251 | 20 | 1 | 14 | 241 | 1 | 251 | 9.16e-117 | 344 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1033400 | sp|Q5MK24|ARV1_ARATH | 42.308 | 234 | 108 | 4 | 16 | 225 | 6 | 236 | 8.27e-47 | 158 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1033400 | G7L5Y4 | 82.869 | 251 | 20 | 1 | 14 | 241 | 1 | 251 | 4.38e-117 | 344 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009430 | Msa1033400 | 0.808093 | 3.669234e-50 | -8.615850e-47 |
| Msa0079070 | Msa1033400 | 0.804647 | 1.953946e-49 | -8.615850e-47 |
| Msa0083280 | Msa1033400 | 0.811291 | 7.536241e-51 | -8.615850e-47 |
| Msa0606720 | Msa1033400 | 0.802986 | 4.324542e-49 | -8.615850e-47 |
| Msa0688390 | Msa1033400 | 0.818274 | 2.134794e-52 | -8.615850e-47 |
| Msa0707250 | Msa1033400 | 0.806322 | 8.701166e-50 | -8.615850e-47 |
| Msa0709400 | Msa1033400 | 0.829050 | 6.392511e-55 | -8.615850e-47 |
| Msa0711450 | Msa1033400 | 0.821897 | 3.163019e-53 | -8.615850e-47 |
| Msa0741440 | Msa1033400 | 0.813391 | 2.620667e-51 | -8.615850e-47 |
| Msa0831110 | Msa1033400 | 0.828161 | 1.048413e-54 | -8.615850e-47 |
| Msa0189320 | Msa1033400 | 0.840105 | 1.062579e-57 | -8.615850e-47 |
| Msa0194950 | Msa1033400 | -0.802423 | 5.650943e-49 | -8.615850e-47 |
| Msa0211150 | Msa1033400 | 0.822125 | 2.800606e-53 | -8.615850e-47 |
| Msa0221470 | Msa1033400 | 0.801958 | 7.042816e-49 | -8.615850e-47 |
| Msa0398670 | Msa1033400 | 0.836373 | 9.721740e-57 | -8.615850e-47 |
| Msa1033400 | Msa1073080 | 0.948597 | 6.874870e-107 | -8.615850e-47 |
| Msa1033400 | Msa1101090 | 0.800241 | 1.580415e-48 | -8.615850e-47 |
| Msa1033400 | Msa1104560 | 0.800409 | 1.461065e-48 | -8.615850e-47 |
| Msa1033400 | Msa1124960 | 0.819834 | 9.433677e-53 | -8.615850e-47 |
| Msa1033400 | Msa1128060 | 0.813292 | 2.755939e-51 | -8.615850e-47 |
| Msa1033400 | Msa1204530 | 0.817801 | 2.731509e-52 | -8.615850e-47 |
| Msa1033400 | Msa1228520 | 0.820889 | 5.404240e-53 | -8.615850e-47 |
| Msa1033400 | Msa1306560 | 0.804063 | 2.586213e-49 | -8.615850e-47 |
| Msa1033400 | Msa1331000 | 0.809021 | 2.324546e-50 | -8.615850e-47 |
| Msa1033400 | Msa1345100 | 0.804016 | 2.644571e-49 | -8.615850e-47 |
| Msa1033400 | Msa1346840 | 0.804569 | 2.028640e-49 | -8.615850e-47 |
| Msa1033400 | Msa1351890 | 0.818684 | 1.724158e-52 | -8.615850e-47 |
| Msa1033400 | Msa1353980 | 0.806636 | 7.472797e-50 | -8.615850e-47 |
| Msa1033400 | Msa1360440 | 0.812670 | 3.772558e-51 | -8.615850e-47 |
| Msa1033400 | Msa1375380 | 0.810501 | 1.117153e-50 | -8.615850e-47 |
| Msa1033400 | Msa1393570 | 0.813255 | 2.807308e-51 | -8.615850e-47 |
| Msa1033400 | Msa1419690 | 0.810215 | 1.287682e-50 | -8.615850e-47 |
| Msa1033400 | Msa1464810 | 0.804089 | 2.553658e-49 | -8.615850e-47 |
| Msa0240920 | Msa1033400 | 0.828745 | 7.577262e-55 | -8.615850e-47 |
| Msa0271510 | Msa1033400 | 0.842311 | 2.793857e-58 | -8.615850e-47 |
| Msa0309770 | Msa1033400 | 0.815272 | 1.006586e-51 | -8.615850e-47 |
| Msa0318680 | Msa1033400 | 0.814948 | 1.187741e-51 | -8.615850e-47 |
| Msa0334550 | Msa1033400 | 0.820587 | 6.340575e-53 | -8.615850e-47 |
| Msa0880020 | Msa1033400 | 0.806812 | 6.858648e-50 | -8.615850e-47 |
| Msa0959140 | Msa1033400 | 0.808698 | 2.725098e-50 | -8.615850e-47 |
| Msa0963270 | Msa1033400 | 0.801942 | 7.097544e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1033400 | MtrunA17_Chr7g0255981 | 82.869 | 251 | 20 | 1 | 14 | 241 | 1 | 251 | 8.42e-121 | 344 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1033400 | AT1G01020.1 | 42.308 | 234 | 108 | 4 | 16 | 225 | 6 | 236 | 8.41e-48 | 158 |
| Msa1033400 | AT4G01510.1 | 43.519 | 216 | 98 | 3 | 18 | 213 | 8 | 219 | 1.67e-41 | 142 |
| Msa1033400 | AT4G01510.5 | 38.306 | 248 | 97 | 5 | 18 | 213 | 8 | 251 | 3.03e-38 | 134 |
| Msa1033400 | AT4G01510.3 | 42.632 | 190 | 85 | 3 | 18 | 187 | 8 | 193 | 1.09e-31 | 115 |
| Msa1033400 | AT1G01020.2 | 39.560 | 182 | 86 | 4 | 16 | 176 | 6 | 184 | 1.91e-25 | 99.4 |
| Msa1033400 | AT1G01020.5 | 45.669 | 127 | 62 | 2 | 103 | 225 | 66 | 189 | 2.46e-25 | 99.4 |
| Msa1033400 | AT1G01020.3 | 45.669 | 127 | 62 | 2 | 103 | 225 | 104 | 227 | 1.91e-24 | 97.8 |
| Msa1033400 | AT1G01020.4 | 45.669 | 127 | 62 | 2 | 103 | 225 | 104 | 227 | 1.91e-24 | 97.8 |
| Msa1033400 | AT4G01510.9 | 45.070 | 142 | 71 | 3 | 72 | 213 | 27 | 161 | 1.87e-23 | 93.6 |
| Msa1033400 | AT4G01510.4 | 60.811 | 74 | 29 | 0 | 140 | 213 | 101 | 174 | 3.80e-23 | 93.2 |
| Msa1033400 | AT4G01510.7 | 60.811 | 74 | 29 | 0 | 140 | 213 | 101 | 174 | 3.80e-23 | 93.2 |
| Msa1033400 | AT4G01510.8 | 60.811 | 74 | 29 | 0 | 140 | 213 | 126 | 199 | 1.32e-22 | 92.4 |
| Msa1033400 | AT4G01510.6 | 38.554 | 166 | 78 | 3 | 18 | 163 | 8 | 169 | 2.58e-17 | 77.8 |
| Msa1033400 | AT4G01510.2 | 38.554 | 166 | 78 | 3 | 18 | 163 | 8 | 169 | 2.58e-17 | 77.8 |
Find 50 sgRNAs with CRISPR-Local
Find 387 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCGTTCAAATCAAATTTA+AGG | 0.102130 | 7_1:-68432484 | None:intergenic |
| TTTGATTGAAGCTGGGTTTC+TGG | 0.122827 | 7_1:+68428253 | Msa1033400:intron |
| GGAAAGCAGCAAGGGTAAAC+TGG | 0.294389 | 7_1:+68430313 | Msa1033400:CDS |
| CTTGCATGAGGATGGTTTAC+AGG | 0.308113 | 7_1:+68432544 | Msa1033400:three_prime_UTR |
| TCTAATGCAGTAGCATTAAA+AGG | 0.313868 | 7_1:+68431573 | Msa1033400:CDS |
| ATGCTGATCGATGTCTGCTT+TGG | 0.371861 | 7_1:+68430475 | Msa1033400:CDS |
| CTGAAAATAAAGTGTATTGA+TGG | 0.372857 | 7_1:-68428329 | None:intergenic |
| TGAAGACAGGTATTTGATCT+TGG | 0.389733 | 7_1:+68430292 | Msa1033400:CDS |
| GGCACCTGAGCTCATATTGT+TGG | 0.394852 | 7_1:+68432318 | Msa1033400:CDS |
| TGCTGATCGATGTCTGCTTT+GGG | 0.407776 | 7_1:+68430476 | Msa1033400:CDS |
| GCACCTGAGCTCATATTGTT+GGG | 0.412842 | 7_1:+68432319 | Msa1033400:CDS |
| TATATGCGGGCCTTACAGTT+TGG | 0.431368 | 7_1:+68430269 | Msa1033400:CDS |
| GCTACCTACACAAATATTAG+TGG | 0.444574 | 7_1:+68432602 | Msa1033400:three_prime_UTR |
| CAAGTATGAGTCGATGTGTA+TGG | 0.465961 | 7_1:+68432254 | Msa1033400:CDS |
| TTGTGTAGGTAGCATTGCTC+TGG | 0.481976 | 7_1:-68432592 | None:intergenic |
| TTCCCCAACAATATGAGCTC+AGG | 0.485920 | 7_1:-68432322 | None:intergenic |
| TGGTTTACAGGGAACCATCA+TGG | 0.492714 | 7_1:+68432556 | Msa1033400:three_prime_UTR |
| ATAATGAAGATCACAGAAGA+TGG | 0.495414 | 7_1:-68431531 | None:intergenic |
| CCTGTCTTCACCAAACTGTA+AGG | 0.496347 | 7_1:-68430279 | None:intergenic |
| CCTTACAGTTTGGTGAAGAC+AGG | 0.508048 | 7_1:+68430279 | Msa1033400:CDS |
| TGAAAATAAAGTGTATTGAT+GGG | 0.520683 | 7_1:-68428328 | None:intergenic |
| CGTCTTGACCATAAAGAAGA+AGG | 0.525717 | 7_1:-68430518 | None:intergenic |
| GATAGCATATGCACTGAAGC+AGG | 0.528557 | 7_1:-68432278 | None:intergenic |
| TGGGGAAACTAATGCAAGGC+TGG | 0.538126 | 7_1:+68432338 | Msa1033400:CDS |
| TTAGTGGAATTGTACATATG+TGG | 0.560323 | 7_1:+68432618 | Msa1033400:three_prime_UTR |
| ATATATCAATCAGTGTCTCC+AGG | 0.564329 | 7_1:+68430548 | Msa1033400:CDS |
| ATACATAGAATGTGAAATCA+TGG | 0.566336 | 7_1:+68428495 | Msa1033400:CDS |
| TAACAATATTGTACGGCCAA+TGG | 0.567074 | 7_1:+68432415 | Msa1033400:three_prime_UTR |
| TTTGATCTTGGAAAGCAGCA+AGG | 0.572668 | 7_1:+68430304 | Msa1033400:CDS |
| GACTTTAAAGACAGTGAGAA+GGG | 0.574370 | 7_1:-68432370 | None:intergenic |
| TTGCATGAGGATGGTTTACA+GGG | 0.576240 | 7_1:+68432545 | Msa1033400:three_prime_UTR |
| GTAGGAGAATTGCAAGGCTG+TGG | 0.577436 | 7_1:+68428465 | Msa1033400:intron |
| TGCGGATGCTTGCATGAGGA+TGG | 0.580256 | 7_1:+68432536 | Msa1033400:three_prime_UTR |
| GAAAGCAGCAAGGGTAAACT+GGG | 0.582414 | 7_1:+68430314 | Msa1033400:CDS |
| TGAATACATCTATACCCCAT+TGG | 0.584321 | 7_1:-68428295 | None:intergenic |
| TTCATATCAACTAGTGATGA+CGG | 0.589680 | 7_1:+68432228 | Msa1033400:intron |
| TTGATCTTGGAAAGCAGCAA+GGG | 0.590794 | 7_1:+68430305 | Msa1033400:CDS |
| TTCACAAACACAATAGCCAT+TGG | 0.597145 | 7_1:-68432431 | None:intergenic |
| GCTAAGTTATAAATCCATGA+TGG | 0.600498 | 7_1:-68432570 | None:intergenic |
| AATTCCACTAATATTTGTGT+AGG | 0.607919 | 7_1:-68432606 | None:intergenic |
| TGACTTTAAAGACAGTGAGA+AGG | 0.613537 | 7_1:-68432371 | None:intergenic |
| CACCTGAGCTCATATTGTTG+GGG | 0.620188 | 7_1:+68432320 | Msa1033400:CDS |
| TTTGTTCCTTGTTTATGATG+CGG | 0.625844 | 7_1:+68432518 | Msa1033400:three_prime_UTR |
| ACTAGTGTCGATGTGCTGCA+AGG | 0.626966 | 7_1:+68430358 | Msa1033400:CDS |
| GGGTATAGATGTATTCAATG+TGG | 0.627099 | 7_1:+68428301 | Msa1033400:CDS |
| CATTACAGACATTACCGTCA+TGG | 0.634573 | 7_1:-68431345 | None:intergenic |
| AAGCATCCGCATCATAAACA+AGG | 0.654350 | 7_1:-68432524 | None:intergenic |
| ATGATGCGGATGCTTGCATG+AGG | 0.667696 | 7_1:+68432532 | Msa1033400:three_prime_UTR |
| TTGTTGGGGAAACTAATGCA+AGG | 0.673137 | 7_1:+68432334 | Msa1033400:CDS |
| GTAATGGTAGGAGAATTGCA+AGG | 0.715387 | 7_1:+68428459 | Msa1033400:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAATGAAAATGT+TGG | + | chr7_1:68427818-68427837 | Msa1033400:intron | 10.0% |
| !! | AAAAAAAAAATGAAAATGTT+GGG | + | chr7_1:68427819-68427838 | Msa1033400:intron | 10.0% |
| !! | AAAAATAAAAAATTCATATC+AGG | + | chr7_1:68430948-68430967 | Msa1033400:intron | 10.0% |
| !! | AGTAATTAAATTAACATAAA+CGG | + | chr7_1:68431827-68431846 | Msa1033400:intron | 10.0% |
| !! | TTAAGTCAATTATTAAAATG+GGG | - | chr7_1:68426872-68426891 | None:intergenic | 15.0% |
| !! | CTTAAGTCAATTATTAAAAT+GGG | - | chr7_1:68426873-68426892 | None:intergenic | 15.0% |
| !! | ACTTAAGTCAATTATTAAAA+TGG | - | chr7_1:68426874-68426893 | None:intergenic | 15.0% |
| !!! | ATGTGTAAAAAATTTAAGTT+GGG | - | chr7_1:68427368-68427387 | None:intergenic | 15.0% |
| !! | CTTATATTATTCTTTAATGA+TGG | + | chr7_1:68427654-68427673 | Msa1033400:intron | 15.0% |
| !! | TTAAACTATATAAAATCAAG+AGG | - | chr7_1:68429493-68429512 | None:intergenic | 15.0% |
| !!! | TTGATTTTATATAGTTTAAG+AGG | + | chr7_1:68429494-68429513 | Msa1033400:intron | 15.0% |
| !!! | CTATTGATTAGATTTATATT+GGG | - | chr7_1:68429779-68429798 | None:intergenic | 15.0% |
| !!! | ACTATTGATTAGATTTATAT+TGG | - | chr7_1:68429780-68429799 | None:intergenic | 15.0% |
| !!! | ATTTATTTTAACATTATGGA+TGG | + | chr7_1:68429995-68430014 | Msa1033400:intron | 15.0% |
| !!! | TTTTATTATTTTAATGCCTT+AGG | + | chr7_1:68430207-68430226 | Msa1033400:intron | 15.0% |
| !!! | CAAATCTTTTTTTTTTTTGA+AGG | - | chr7_1:68430893-68430912 | None:intergenic | 15.0% |
| !!! | TTATTTTATGCTCTATTATA+TGG | - | chr7_1:68430976-68430995 | None:intergenic | 15.0% |
| !!! | AAAAAAAGTAAATATGGTTT+TGG | - | chr7_1:68432079-68432098 | None:intergenic | 15.0% |
| !! | TAAGTCAATTATTAAAATGG+GGG | - | chr7_1:68426871-68426890 | None:intergenic | 20.0% |
| !!! | ATAATTGACTTAAGTGTTTT+AGG | + | chr7_1:68426879-68426898 | Msa1033400:intron | 20.0% |
| !!! | TAATTGACTTAAGTGTTTTA+GGG | + | chr7_1:68426880-68426899 | Msa1033400:intron | 20.0% |
| !! | GATGTGTAAAAAATTTAAGT+TGG | - | chr7_1:68427369-68427388 | None:intergenic | 20.0% |
| !!! | TTTCTCTTTCGAATATTTTA+AGG | + | chr7_1:68427551-68427570 | Msa1033400:intron | 20.0% |
| !!! | TATAATGTAACTGAAAGTAT+TGG | + | chr7_1:68427629-68427648 | Msa1033400:intron | 20.0% |
| !!! | ATATTTTCAGTTACATATTG+AGG | + | chr7_1:68428013-68428032 | Msa1033400:intron | 20.0% |
| !!! | TGAAAATAAAGTGTATTGAT+GGG | - | chr7_1:68428331-68428350 | None:intergenic | 20.0% |
| !! | TATTACAATAATCTGCAAAA+GGG | - | chr7_1:68428596-68428615 | None:intergenic | 20.0% |
| !!! | ATTTAAAATAACATAGCATG+AGG | + | chr7_1:68428793-68428812 | Msa1033400:intron | 20.0% |
| !! | TATTGCAATATATCATACAA+GGG | - | chr7_1:68428977-68428996 | None:intergenic | 20.0% |
| !! | TTAACAGATAAATATACAAG+TGG | - | chr7_1:68429100-68429119 | None:intergenic | 20.0% |
| !! | CTTGTATATTTATCTGTTAA+AGG | + | chr7_1:68429100-68429119 | Msa1033400:intron | 20.0% |
| !!! | CAATTTTTGTTTTTAAACCT+TGG | - | chr7_1:68429251-68429270 | None:intergenic | 20.0% |
| !! | CAAGGTTTAAAAACAAAAAT+TGG | + | chr7_1:68429249-68429268 | Msa1033400:intron | 20.0% |
| !! | ATAATCTAATTATCCAACTA+TGG | - | chr7_1:68429614-68429633 | None:intergenic | 20.0% |
| !!! | TACATTTTGAAAATTTTGCA+GGG | + | chr7_1:68430114-68430133 | Msa1033400:intron | 20.0% |
| !! | GTAATAAAGAAAGGAATAAT+TGG | + | chr7_1:68430605-68430624 | Msa1033400:intron | 20.0% |
| !!! | TTTTTTCTGGAGAATTAAAT+GGG | - | chr7_1:68430642-68430661 | None:intergenic | 20.0% |
| !! | TATATTAATGAGTTTCCTAA+TGG | - | chr7_1:68430720-68430739 | None:intergenic | 20.0% |
| !!! | TTATTATTCGATTTAGTTCT+TGG | - | chr7_1:68430831-68430850 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTTTTTGAAGGAA+AGG | - | chr7_1:68430888-68430907 | None:intergenic | 20.0% |
| !! | AAAAACAAAAATATACTCCA+GGG | + | chr7_1:68431003-68431022 | Msa1033400:intron | 20.0% |
| !! | CACACATGAATAATATATTT+AGG | - | chr7_1:68431263-68431282 | None:intergenic | 20.0% |
| !!! | TATTCTTAGCTTTAAAAAGT+TGG | + | chr7_1:68431400-68431419 | Msa1033400:intron | 20.0% |
| !! | ATGAGTTTCTTTCATATATA+TGG | + | chr7_1:68431766-68431785 | Msa1033400:intron | 20.0% |
| !!! | ACCATATTTACTTTTTTTCT+TGG | + | chr7_1:68432081-68432100 | Msa1033400:intron | 20.0% |
| !! | TCCAAGAAAAAAAGTAAATA+TGG | - | chr7_1:68432085-68432104 | None:intergenic | 20.0% |
| !!! | CTTTTAGTAACAATATTGTA+CGG | + | chr7_1:68432408-68432427 | Msa1033400:exon | 20.0% |
| !! | ATTTGTGTTTTCCATAATGA+TGG | + | chr7_1:68426827-68426846 | Msa1033400:intron | 25.0% |
| !!! | AATTGACTTAAGTGTTTTAG+GGG | + | chr7_1:68426881-68426900 | Msa1033400:intron | 25.0% |
| !!! | TGTGATCTATTTTGAGTTTT+TGG | + | chr7_1:68426932-68426951 | Msa1033400:intron | 25.0% |
| !!! | GTGATCTATTTTGAGTTTTT+GGG | + | chr7_1:68426933-68426952 | Msa1033400:intron | 25.0% |
| ! | TCTTTCTTGTCATATTCTTT+AGG | + | chr7_1:68427000-68427019 | Msa1033400:intron | 25.0% |
| ! | AATGACCAGTTATTAACATA+AGG | + | chr7_1:68427105-68427124 | Msa1033400:intron | 25.0% |
| ! | ACTTACCTTATGTTAATAAC+TGG | - | chr7_1:68427113-68427132 | None:intergenic | 25.0% |
| ! | AGTTATTAACATAAGGTAAG+TGG | + | chr7_1:68427112-68427131 | Msa1033400:intron | 25.0% |
| ! | GTTATTAACATAAGGTAAGT+GGG | + | chr7_1:68427113-68427132 | Msa1033400:intron | 25.0% |
| !! | TAAACATGCATTAAGTTGTT+AGG | - | chr7_1:68427258-68427277 | None:intergenic | 25.0% |
| !!! | TTTATACATGTTTTTACCTG+TGG | - | chr7_1:68427753-68427772 | None:intergenic | 25.0% |
| !! | TGTAATTTTATCATCACCAA+TGG | + | chr7_1:68428279-68428298 | Msa1033400:CDS | 25.0% |
| !! | GTAATTTTATCATCACCAAT+GGG | + | chr7_1:68428280-68428299 | Msa1033400:CDS | 25.0% |
| !! | TAATTTTATCATCACCAATG+GGG | + | chr7_1:68428281-68428300 | Msa1033400:CDS | 25.0% |
| ! | CTGAAAATAAAGTGTATTGA+TGG | - | chr7_1:68428332-68428351 | None:intergenic | 25.0% |
| !!! | ACTTTATTTTCAGTATTCTC+TGG | + | chr7_1:68428339-68428358 | Msa1033400:CDS | 25.0% |
| !!! | CTTTATTTTCAGTATTCTCT+GGG | + | chr7_1:68428340-68428359 | Msa1033400:CDS | 25.0% |
| ! | TTCAAGACAAAATGAAAAGA+AGG | - | chr7_1:68428399-68428418 | None:intergenic | 25.0% |
| ! | AAATCAATTCACTATGTAGA+GGG | - | chr7_1:68428427-68428446 | None:intergenic | 25.0% |
| ! | AAAATCAATTCACTATGTAG+AGG | - | chr7_1:68428428-68428447 | None:intergenic | 25.0% |
| ! | ATACATAGAATGTGAAATCA+TGG | + | chr7_1:68428495-68428514 | Msa1033400:CDS | 25.0% |
| ! | CTATTACAATAATCTGCAAA+AGG | - | chr7_1:68428597-68428616 | None:intergenic | 25.0% |
| ! | ATTGTAAAGAAGATGTCTAT+AGG | - | chr7_1:68428644-68428663 | None:intergenic | 25.0% |
| ! | TTTCTCAAAAAACAAAGGTA+CGG | + | chr7_1:68428746-68428765 | Msa1033400:intron | 25.0% |
| !!! | AGATATTCATTTGTCACTTT+TGG | + | chr7_1:68428891-68428910 | Msa1033400:intron | 25.0% |
| ! | CTATTGCAATATATCATACA+AGG | - | chr7_1:68428978-68428997 | None:intergenic | 25.0% |
| !! | TTCACAAAGTACTAATACTA+GGG | - | chr7_1:68429158-68429177 | None:intergenic | 25.0% |
| !! | TTTCACAAAGTACTAATACT+AGG | - | chr7_1:68429159-68429178 | None:intergenic | 25.0% |
| !!! | GTTTTTTTCTTGAGAAAATG+AGG | - | chr7_1:68429184-68429203 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTAAACCTTGGTA+CGG | - | chr7_1:68429246-68429265 | None:intergenic | 25.0% |
| ! | AAACAAAAATTGGTACATCA+TGG | + | chr7_1:68429259-68429278 | Msa1033400:intron | 25.0% |
| ! | AACAAAAATTGGTACATCAT+GGG | + | chr7_1:68429260-68429279 | Msa1033400:intron | 25.0% |
| ! | TCCAATAAGTTAAATAGTGT+TGG | + | chr7_1:68429633-68429652 | Msa1033400:intron | 25.0% |
| ! | CCAATAAGTTAAATAGTGTT+GGG | + | chr7_1:68429634-68429653 | Msa1033400:intron | 25.0% |
| ! | CTGAATACTTGTTTAGAAAA+TGG | - | chr7_1:68429940-68429959 | None:intergenic | 25.0% |
| !!! | GTACATTTTGAAAATTTTGC+AGG | + | chr7_1:68430113-68430132 | Msa1033400:intron | 25.0% |
| !!! | GTTTTTCAAAAGCATATATG+CGG | + | chr7_1:68430255-68430274 | Msa1033400:CDS | 25.0% |
| !!! | TTTTTCAAAAGCATATATGC+GGG | + | chr7_1:68430256-68430275 | Msa1033400:CDS | 25.0% |
| !! | ATTACTCAGTTCAGAATTTT+TGG | + | chr7_1:68430417-68430436 | Msa1033400:intron | 25.0% |
| !! | GTAACTTGATCAATGTTTTA+TGG | + | chr7_1:68430439-68430458 | Msa1033400:intron | 25.0% |
| !! | CAATGTTTTATGGTTTTCAT+TGG | + | chr7_1:68430449-68430468 | Msa1033400:intron | 25.0% |
| !! | TCTTTTAACCTTCTTCTTTA+TGG | + | chr7_1:68430510-68430529 | Msa1033400:CDS | 25.0% |
| ! | ACCATACTTGTAATAAAGAA+AGG | + | chr7_1:68430596-68430615 | Msa1033400:intron | 25.0% |
| ! | TCCTTTCTTTATTACAAGTA+TGG | - | chr7_1:68430600-68430619 | None:intergenic | 25.0% |
| !!! | GTTTTTTCTGGAGAATTAAA+TGG | - | chr7_1:68430643-68430662 | None:intergenic | 25.0% |
| !!! | TTTTTTTTGAAGGAAAGGAT+GGG | - | chr7_1:68430883-68430902 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTGAAGGAAAGGA+TGG | - | chr7_1:68430884-68430903 | None:intergenic | 25.0% |
| ! | GAAAAACAAAAATATACTCC+AGG | + | chr7_1:68431002-68431021 | Msa1033400:intron | 25.0% |
| !!! | CTGTTTTTCTCATTTCTATT+AGG | + | chr7_1:68431220-68431239 | Msa1033400:intron | 25.0% |
| ! | AATATATTATTCATGTGTGC+AGG | + | chr7_1:68431264-68431283 | Msa1033400:intron | 25.0% |
| ! | GTAGTAAACAATAAAACTGA+CGG | - | chr7_1:68431428-68431447 | None:intergenic | 25.0% |
| ! | TGGAACAGAGAAAAATTTAA+GGG | - | chr7_1:68431716-68431735 | None:intergenic | 25.0% |
| ! | CAACAAATCATTTCTCATAT+GGG | - | chr7_1:68431875-68431894 | None:intergenic | 25.0% |
| ! | TCAACAAATCATTTCTCATA+TGG | - | chr7_1:68431876-68431895 | None:intergenic | 25.0% |
| !!! | TATGAGAAATGATTTGTTGA+AGG | + | chr7_1:68431876-68431895 | Msa1033400:intron | 25.0% |
| !!! | ATGAGAAATGATTTGTTGAA+GGG | + | chr7_1:68431877-68431896 | Msa1033400:intron | 25.0% |
| ! | CTATCAAATGGAATAATAGT+TGG | - | chr7_1:68431977-68431996 | None:intergenic | 25.0% |
| !!! | AGTAAATATGGTTTTGGTTA+TGG | - | chr7_1:68432073-68432092 | None:intergenic | 25.0% |
| !!! | TATCAAGTTGTTTTTCATTC+AGG | + | chr7_1:68432297-68432316 | Msa1033400:CDS | 25.0% |
| ! | TTTAAGGAAAAAGAAAGTGA+AGG | - | chr7_1:68432471-68432490 | None:intergenic | 25.0% |
| ! | CATCGTTCAAATCAAATTTA+AGG | - | chr7_1:68432487-68432506 | None:intergenic | 25.0% |
| ! | AATTCCACTAATATTTGTGT+AGG | - | chr7_1:68432609-68432628 | None:intergenic | 25.0% |
| TAACATGAGTTCCATCATTA+TGG | - | chr7_1:68426841-68426860 | None:intergenic | 30.0% | |
| AAGCATAATGCAAGAAATAG+CGG | + | chr7_1:68426969-68426988 | Msa1033400:intron | 30.0% | |
| CCAATTCTTAAACTACATGA+AGG | - | chr7_1:68427060-68427079 | None:intergenic | 30.0% | |
| CCTTCATGTAGTTTAAGAAT+TGG | + | chr7_1:68427057-68427076 | Msa1033400:intron | 30.0% | |
| ! | GTAGTTTAAGAATTGGTTCT+TGG | + | chr7_1:68427064-68427083 | Msa1033400:intron | 30.0% |
| TTAATAACTGGTCATTGAGA+CGG | - | chr7_1:68427101-68427120 | None:intergenic | 30.0% | |
| ! | ATCATTTTGTGCTCAAAGTT+TGG | - | chr7_1:68427148-68427167 | None:intergenic | 30.0% |
| ! | CTTAAATTAGGGTTTGGTTT+GGG | - | chr7_1:68427298-68427317 | None:intergenic | 30.0% |
| GTACTATGTGCCTTAAATTA+GGG | - | chr7_1:68427309-68427328 | None:intergenic | 30.0% | |
| AGTACTATGTGCCTTAAATT+AGG | - | chr7_1:68427310-68427329 | None:intergenic | 30.0% | |
| ! | ATTGACTCTCTTTGAAAAAC+AGG | - | chr7_1:68427391-68427410 | None:intergenic | 30.0% |
| ACTTAAATTGAACCCAAAAG+GGG | - | chr7_1:68427489-68427508 | None:intergenic | 30.0% | |
| GACTTAAATTGAACCCAAAA+GGG | - | chr7_1:68427490-68427509 | None:intergenic | 30.0% | |
| AGACTTAAATTGAACCCAAA+AGG | - | chr7_1:68427491-68427510 | None:intergenic | 30.0% | |
| !! | TTTTTCGGTCTCCTAAAATA+TGG | + | chr7_1:68427919-68427938 | Msa1033400:intron | 30.0% |
| ! | TTTTCGGTCTCCTAAAATAT+GGG | + | chr7_1:68427920-68427939 | Msa1033400:intron | 30.0% |
| ACACAGCTATCAAATCATAT+AGG | - | chr7_1:68428071-68428090 | None:intergenic | 30.0% | |
| AATGCTGACAATTATGAAAC+TGG | + | chr7_1:68428227-68428246 | Msa1033400:intron | 30.0% | |
| ! | ATTTTCAGACCCTTTTGTAA+TGG | + | chr7_1:68428443-68428462 | Msa1033400:intron | 30.0% |
| ATTCTCCTACCATTACAAAA+GGG | - | chr7_1:68428455-68428474 | None:intergenic | 30.0% | |
| AATTCTCCTACCATTACAAA+AGG | - | chr7_1:68428456-68428475 | None:intergenic | 30.0% | |
| AATAATCTGCAAAAGGGAAT+AGG | - | chr7_1:68428590-68428609 | None:intergenic | 30.0% | |
| TATAATACTTCACAAACCGA+AGG | + | chr7_1:68428618-68428637 | Msa1033400:intron | 30.0% | |
| ! | TTCTCAAAAAACAAAGGTAC+GGG | + | chr7_1:68428747-68428766 | Msa1033400:intron | 30.0% |
| AGGAAATTATATCTCTCAAC+CGG | + | chr7_1:68428813-68428832 | Msa1033400:intron | 30.0% | |
| AAAAGCAATATAATTTCCGC+CGG | - | chr7_1:68428835-68428854 | None:intergenic | 30.0% | |
| TTGCTTGGAGAAAAGAAAAA+GGG | - | chr7_1:68428929-68428948 | None:intergenic | 30.0% | |
| TTTGCTTGGAGAAAAGAAAA+AGG | - | chr7_1:68428930-68428949 | None:intergenic | 30.0% | |
| ! | AGAATAAGATGTCATTTGCT+TGG | - | chr7_1:68428944-68428963 | None:intergenic | 30.0% |
| GATAAATATACAAGTGGAAC+TGG | - | chr7_1:68429094-68429113 | None:intergenic | 30.0% | |
| ! | TCACAAAGTACTAATACTAG+GGG | - | chr7_1:68429157-68429176 | None:intergenic | 30.0% |
| !!! | GAAAATTGTTTTTACTGCCT+TGG | + | chr7_1:68429454-68429473 | Msa1033400:intron | 30.0% |
| TAGTTTAAGAGGCAATACTT+AGG | + | chr7_1:68429505-68429524 | Msa1033400:intron | 30.0% | |
| GGTCATATTTGTATGCAATA+TGG | + | chr7_1:68429526-68429545 | Msa1033400:intron | 30.0% | |
| ! | CCCAACACTATTTAACTTAT+TGG | - | chr7_1:68429637-68429656 | None:intergenic | 30.0% |
| AAAATCAGCTTGTAAGATGA+TGG | - | chr7_1:68429740-68429759 | None:intergenic | 30.0% | |
| !! | TCTTACAAGCTGATTTTGTA+AGG | + | chr7_1:68429743-68429762 | Msa1033400:intron | 30.0% |
| GAAAGTTCTACTTGACTATA+AGG | - | chr7_1:68429886-68429905 | None:intergenic | 30.0% | |
| ! | ATCTACTGAGCATTTTATAG+TGG | + | chr7_1:68430052-68430071 | Msa1033400:intron | 30.0% |
| ! | TCACTTGTTAGTATTGGAAA+AGG | - | chr7_1:68430090-68430109 | None:intergenic | 30.0% |
| ATCCATTCTCATCATCTTAT+AGG | + | chr7_1:68430183-68430202 | Msa1033400:intron | 30.0% | |
| ATCCTATAAGATGATGAGAA+TGG | - | chr7_1:68430188-68430207 | None:intergenic | 30.0% | |
| ! | AATTTATGCTCTGAATCCTA+AGG | - | chr7_1:68430226-68430245 | None:intergenic | 30.0% |
| AACTGAGTAATTTGAGGAAA+AGG | - | chr7_1:68430408-68430427 | None:intergenic | 30.0% | |
| ATTCTGAACTGAGTAATTTG+AGG | - | chr7_1:68430414-68430433 | None:intergenic | 30.0% | |
| ! | ATACATCAGAAGTATATACC+TGG | - | chr7_1:68430569-68430588 | None:intergenic | 30.0% |
| !!! | AACACTTTGTTCGTTTTTTC+TGG | - | chr7_1:68430655-68430674 | None:intergenic | 30.0% |
| AGAAAAAACGAACAAAGTGT+TGG | + | chr7_1:68430654-68430673 | Msa1033400:intron | 30.0% | |
| GAGTAACAAAATTGTCCATT+AGG | + | chr7_1:68430702-68430721 | Msa1033400:intron | 30.0% | |
| !! | ATTTAGTTCTTGGTAACACA+AGG | - | chr7_1:68430821-68430840 | None:intergenic | 30.0% |
| AATCGAATAATAAGAGCAGA+AGG | + | chr7_1:68430838-68430857 | Msa1033400:intron | 30.0% | |
| CATGGCAATAAGAAAAATCT+TGG | - | chr7_1:68431330-68431349 | None:intergenic | 30.0% | |
| ! | GATTTTTCTTATTGCCATGA+CGG | + | chr7_1:68431331-68431350 | Msa1033400:CDS | 30.0% |
| TTTAACAACACATCATAGAC+AGG | - | chr7_1:68431459-68431478 | None:intergenic | 30.0% | |
| ! | GTCTATGATGTGTTGTTAAA+CGG | + | chr7_1:68431459-68431478 | Msa1033400:intron | 30.0% |
| ATAATGAAGATCACAGAAGA+TGG | - | chr7_1:68431534-68431553 | None:intergenic | 30.0% | |
| TCTAATGCAGTAGCATTAAA+AGG | + | chr7_1:68431573-68431592 | Msa1033400:CDS | 30.0% | |
| AAAATTTAAGGGCAACATAC+AGG | - | chr7_1:68431705-68431724 | None:intergenic | 30.0% | |
| GTGGAACAGAGAAAAATTTA+AGG | - | chr7_1:68431717-68431736 | None:intergenic | 30.0% | |
| ! | AAATGACTTGTACGAAAGTT+GGG | - | chr7_1:68431741-68431760 | None:intergenic | 30.0% |
| ! | AAAATGACTTGTACGAAAGT+TGG | - | chr7_1:68431742-68431761 | None:intergenic | 30.0% |
| AACTGTATCTATACTCCTAA+AGG | - | chr7_1:68432004-68432023 | None:intergenic | 30.0% | |
| TGGTTATGGAAACATACATT+CGG | - | chr7_1:68432059-68432078 | None:intergenic | 30.0% | |
| TTCATATCAACTAGTGATGA+CGG | + | chr7_1:68432228-68432247 | Msa1033400:intron | 30.0% | |
| ! | TTTGTTCCTTGTTTATGATG+CGG | + | chr7_1:68432518-68432537 | Msa1033400:three_prime_UTR | 30.0% |
| GCTAAGTTATAAATCCATGA+TGG | - | chr7_1:68432573-68432592 | None:intergenic | 30.0% | |
| TTAGTGGAATTGTACATATG+TGG | + | chr7_1:68432618-68432637 | Msa1033400:three_prime_UTR | 30.0% | |
| !!! | TTTGAGTTTTTGGGTGCATT+TGG | + | chr7_1:68426942-68426961 | Msa1033400:intron | 35.0% |
| ! | ACTACATGAAGGCACAAAAT+TGG | - | chr7_1:68427049-68427068 | None:intergenic | 35.0% |
| TGCTCAAAGTTTGGACAAAT+AGG | - | chr7_1:68427139-68427158 | None:intergenic | 35.0% | |
| ! | TCTTACATGAAGGTGCATAT+TGG | + | chr7_1:68427205-68427224 | Msa1033400:intron | 35.0% |
| ! | CCTTAAATTAGGGTTTGGTT+TGG | - | chr7_1:68427299-68427318 | None:intergenic | 35.0% |
| CCAAACCAAACCCTAATTTA+AGG | + | chr7_1:68427296-68427315 | Msa1033400:intron | 35.0% | |
| ATGTGCCTTAAATTAGGGTT+TGG | - | chr7_1:68427304-68427323 | None:intergenic | 35.0% | |
| TTTCAAAGAGAGTCAATGTG+TGG | + | chr7_1:68427394-68427413 | Msa1033400:intron | 35.0% | |
| TTCAAAGAGAGTCAATGTGT+GGG | + | chr7_1:68427395-68427414 | Msa1033400:intron | 35.0% | |
| ! | TTCTTCTATCATACCCCTTT+TGG | + | chr7_1:68427473-68427492 | Msa1033400:intron | 35.0% |
| ! | TCTTCTATCATACCCCTTTT+GGG | + | chr7_1:68427474-68427493 | Msa1033400:intron | 35.0% |
| TTAAGTCTTTGCTGCAACAT+TGG | + | chr7_1:68427503-68427522 | Msa1033400:intron | 35.0% | |
| !!! | GCCTGGTTTTGTGAATTTAT+GGG | + | chr7_1:68427697-68427716 | Msa1033400:intron | 35.0% |
| TCCCATAAATTCACAAAACC+AGG | - | chr7_1:68427701-68427720 | None:intergenic | 35.0% | |
| GTTCAAGATTCTATCAGTTC+TGG | - | chr7_1:68427731-68427750 | None:intergenic | 35.0% | |
| !! | CTTTGGTGCTTATATGATTG+CGG | + | chr7_1:68427879-68427898 | Msa1033400:intron | 35.0% |
| ! | GTCTCCTAAAATATGGGTTA+GGG | + | chr7_1:68427926-68427945 | Msa1033400:intron | 35.0% |
| ! | TTGACCCTAACCCATATTTT+AGG | - | chr7_1:68427933-68427952 | None:intergenic | 35.0% |
| ACAGTATGTATCTTCTACAC+AGG | - | chr7_1:68427988-68428007 | None:intergenic | 35.0% | |
| TGTGTAGAAGATACATACTG+TGG | + | chr7_1:68427987-68428006 | Msa1033400:intron | 35.0% | |
| TTGATACGCAAAGCAAGTTA+CGG | - | chr7_1:68428115-68428134 | None:intergenic | 35.0% | |
| CTGAATAAGAAATCCCAACA+CGG | - | chr7_1:68428141-68428160 | None:intergenic | 35.0% | |
| !!! | ACTGGAATTTTGATTGAAGC+TGG | + | chr7_1:68428245-68428264 | Msa1033400:intron | 35.0% |
| !!! | CTGGAATTTTGATTGAAGCT+GGG | + | chr7_1:68428246-68428265 | Msa1033400:intron | 35.0% |
| TGAATACATCTATACCCCAT+TGG | - | chr7_1:68428298-68428317 | None:intergenic | 35.0% | |
| GGGTATAGATGTATTCAATG+TGG | + | chr7_1:68428301-68428320 | Msa1033400:CDS | 35.0% | |
| CGGCATTTCTCAAAAAACAA+AGG | + | chr7_1:68428741-68428760 | Msa1033400:intron | 35.0% | |
| AAATTATATCTCTCAACCGG+CGG | + | chr7_1:68428816-68428835 | Msa1033400:intron | 35.0% | |
| TGCTTGGAGAAAAGAAAAAG+GGG | - | chr7_1:68428928-68428947 | None:intergenic | 35.0% | |
| ATGTGACAATTGTGCAAGAA+AGG | - | chr7_1:68429039-68429058 | None:intergenic | 35.0% | |
| ! | ATACAATGGTTTTCCTCTCA+AGG | - | chr7_1:68429065-68429084 | None:intergenic | 35.0% |
| TTTAAACCTTGGTACGGTTA+CGG | - | chr7_1:68429240-68429259 | None:intergenic | 35.0% | |
| ! | GAAAACAATTTTCGCATGCA+CGG | - | chr7_1:68429415-68429434 | None:intergenic | 35.0% |
| ACAAACAGATATGTTGCAGT+AGG | + | chr7_1:68429815-68429834 | Msa1033400:intron | 35.0% | |
| ATGGATAAGGCTAAAGTGAA+AGG | - | chr7_1:68429842-68429861 | None:intergenic | 35.0% | |
| ! | TACGAGTCACTTGTTAGTAT+TGG | - | chr7_1:68430096-68430115 | None:intergenic | 35.0% |
| TGAAGACAGGTATTTGATCT+TGG | + | chr7_1:68430292-68430311 | Msa1033400:CDS | 35.0% | |
| ATATATCAATCAGTGTCTCC+AGG | + | chr7_1:68430548-68430567 | Msa1033400:CDS | 35.0% | |
| GTAACTTCATGTCTAAGGAT+GGG | - | chr7_1:68430917-68430936 | None:intergenic | 35.0% | |
| TGTAACTTCATGTCTAAGGA+TGG | - | chr7_1:68430918-68430937 | None:intergenic | 35.0% | |
| TACGTGTAACTTCATGTCTA+AGG | - | chr7_1:68430922-68430941 | None:intergenic | 35.0% | |
| ACAAAAATATACTCCAGGGT+AGG | + | chr7_1:68431007-68431026 | Msa1033400:intron | 35.0% | |
| ! | GAGTTAGTTTCTGTGATTGT+AGG | + | chr7_1:68431088-68431107 | Msa1033400:intron | 35.0% |
| CTTCATTCAATCGATGTAAC+AGG | + | chr7_1:68431180-68431199 | Msa1033400:intron | 35.0% | |
| CGTTCAAGTATATTTCCTGT+AGG | + | chr7_1:68431497-68431516 | Msa1033400:intron | 35.0% | |
| AAGTATATTTCCTGTAGGTC+TGG | + | chr7_1:68431502-68431521 | Msa1033400:intron | 35.0% | |
| AGTATATTTCCTGTAGGTCT+GGG | + | chr7_1:68431503-68431522 | Msa1033400:intron | 35.0% | |
| !! | TTATCGTGAAGTATCGACTA+GGG | - | chr7_1:68431616-68431635 | None:intergenic | 35.0% |
| ! | AATGACTTGTACGAAAGTTG+GGG | - | chr7_1:68431740-68431759 | None:intergenic | 35.0% |
| TTTGTGTGTTTCATCAGACT+TGG | + | chr7_1:68431924-68431943 | Msa1033400:intron | 35.0% | |
| CCTAAAGGCAATCTATCAAA+TGG | - | chr7_1:68431989-68432008 | None:intergenic | 35.0% | |
| CCATTTGATAGATTGCCTTT+AGG | + | chr7_1:68431986-68432005 | Msa1033400:intron | 35.0% | |
| ATGGAAACATACATTCGGAT+GGG | - | chr7_1:68432054-68432073 | None:intergenic | 35.0% | |
| TATGGAAACATACATTCGGA+TGG | - | chr7_1:68432055-68432074 | None:intergenic | 35.0% | |
| !!! | TTTTTCTCTCAGATGGATTG+TGG | + | chr7_1:68432158-68432177 | Msa1033400:intron | 35.0% |
| TCAGTATTCAACTGTAAGCA+TGG | - | chr7_1:68432201-68432220 | None:intergenic | 35.0% | |
| ! | GACTTTAAAGACAGTGAGAA+GGG | - | chr7_1:68432373-68432392 | None:intergenic | 35.0% |
| ! | TGACTTTAAAGACAGTGAGA+AGG | - | chr7_1:68432374-68432393 | None:intergenic | 35.0% |
| TAACAATATTGTACGGCCAA+TGG | + | chr7_1:68432415-68432434 | Msa1033400:three_prime_UTR | 35.0% | |
| TTCACAAACACAATAGCCAT+TGG | - | chr7_1:68432434-68432453 | None:intergenic | 35.0% | |
| GCTACCTACACAAATATTAG+TGG | + | chr7_1:68432602-68432621 | Msa1033400:three_prime_UTR | 35.0% | |
| ! | TTTTTGACGTCGAGCACATA+CGG | + | chr7_1:68427181-68427200 | Msa1033400:intron | 40.0% |
| CACATACGGATCTTACATGA+AGG | + | chr7_1:68427195-68427214 | Msa1033400:intron | 40.0% | |
| GTTGGGCAATTTGTCAAACA+TGG | - | chr7_1:68427351-68427370 | None:intergenic | 40.0% | |
| TCAAAGAGAGTCAATGTGTG+GGG | + | chr7_1:68427396-68427415 | Msa1033400:intron | 40.0% | |
| ! | TGGTTTGAGATCTAGAGACT+AGG | + | chr7_1:68427674-68427693 | Msa1033400:intron | 40.0% |
| ! | GGTTTGAGATCTAGAGACTA+GGG | + | chr7_1:68427675-68427694 | Msa1033400:intron | 40.0% |
| !!! | GGCCTGGTTTTGTGAATTTA+TGG | + | chr7_1:68427696-68427715 | Msa1033400:intron | 40.0% |
| CTGATAGAATCTTGAACCAC+AGG | + | chr7_1:68427734-68427753 | Msa1033400:intron | 40.0% | |
| AATGAAAATGTTGGGACCTG+TGG | + | chr7_1:68427827-68427846 | Msa1033400:intron | 40.0% | |
| ATGAAAATGTTGGGACCTGT+GGG | + | chr7_1:68427828-68427847 | Msa1033400:intron | 40.0% | |
| GGTCTCCTAAAATATGGGTT+AGG | + | chr7_1:68427925-68427944 | Msa1033400:intron | 40.0% | |
| TTGCGTATCAATTTCCGTGT+TGG | + | chr7_1:68428124-68428143 | Msa1033400:intron | 40.0% | |
| TGCGTATCAATTTCCGTGTT+GGG | + | chr7_1:68428125-68428144 | Msa1033400:intron | 40.0% | |
| TTTGATTGAAGCTGGGTTTC+TGG | + | chr7_1:68428253-68428272 | Msa1033400:intron | 40.0% | |
| ! | TCAGACCCTTTTGTAATGGT+AGG | + | chr7_1:68428447-68428466 | Msa1033400:intron | 40.0% |
| GTAATGGTAGGAGAATTGCA+AGG | + | chr7_1:68428459-68428478 | Msa1033400:intron | 40.0% | |
| AGAAGATGTCTATAGGCCTT+CGG | - | chr7_1:68428637-68428656 | None:intergenic | 40.0% | |
| ATTGCAATAGTTGCAGTTCC+AGG | + | chr7_1:68428988-68429007 | Msa1033400:intron | 40.0% | |
| GAAAAGGAAATAGTGCAACC+TGG | - | chr7_1:68429009-68429028 | None:intergenic | 40.0% | |
| ! | CAAGAAAGGCATGAAGGAAA+AGG | - | chr7_1:68429025-68429044 | None:intergenic | 40.0% |
| ! | ATTGTGCAAGAAAGGCATGA+AGG | - | chr7_1:68429031-68429050 | None:intergenic | 40.0% |
| ATTGTCACATAAGCCTTGAG+AGG | + | chr7_1:68429049-68429068 | Msa1033400:intron | 40.0% | |
| AGTACTAATACTAGGGGAGT+AGG | - | chr7_1:68429151-68429170 | None:intergenic | 40.0% | |
| ! | TACGGGTACGTTTTGCAAAT+TGG | + | chr7_1:68429333-68429352 | Msa1033400:intron | 40.0% |
| !! | ACTTCATCACTCTGAAGCAT+GGG | - | chr7_1:68429363-68429382 | None:intergenic | 40.0% |
| !! | AACTTCATCACTCTGAAGCA+TGG | - | chr7_1:68429364-68429383 | None:intergenic | 40.0% |
| CTTCAGAGTGATGAAGTTTC+AGG | + | chr7_1:68429366-68429385 | Msa1033400:intron | 40.0% | |
| ACATGCCAAATGCCTCAATT+AGG | - | chr7_1:68429693-68429712 | None:intergenic | 40.0% | |
| ! | AAATTTTGCAGGGACTACTC+TGG | + | chr7_1:68430124-68430143 | Msa1033400:intron | 40.0% |
| TTTGATCTTGGAAAGCAGCA+AGG | + | chr7_1:68430304-68430323 | Msa1033400:CDS | 40.0% | |
| TTGATCTTGGAAAGCAGCAA+GGG | + | chr7_1:68430305-68430324 | Msa1033400:CDS | 40.0% | |
| CGTCTTGACCATAAAGAAGA+AGG | - | chr7_1:68430521-68430540 | None:intergenic | 40.0% | |
| AATATACTCCAGGGTAGGTT+AGG | + | chr7_1:68431012-68431031 | Msa1033400:intron | 40.0% | |
| ! | AGGTGCAATGACATTTTGCT+TGG | + | chr7_1:68431284-68431303 | Msa1033400:intron | 40.0% |
| CATTACAGACATTACCGTCA+TGG | - | chr7_1:68431348-68431367 | None:intergenic | 40.0% | |
| TGTAATGCAGAACTCTGAGT+TGG | + | chr7_1:68431361-68431380 | Msa1033400:intron | 40.0% | |
| !! | CTTATCGTGAAGTATCGACT+AGG | - | chr7_1:68431617-68431636 | None:intergenic | 40.0% |
| GTCGATACTTCACGATAAGT+TGG | + | chr7_1:68431618-68431637 | Msa1033400:intron | 40.0% | |
| ! | ATGACTTGTACGAAAGTTGG+GGG | - | chr7_1:68431739-68431758 | None:intergenic | 40.0% |
| AAACATACATTCGGATGGGA+AGG | - | chr7_1:68432050-68432069 | None:intergenic | 40.0% | |
| !! | GCTTGTGCATTTTGACATTC+TGG | + | chr7_1:68432129-68432148 | Msa1033400:intron | 40.0% |
| !! | TGTGCATTTTGACATTCTGG+CGG | + | chr7_1:68432132-68432151 | Msa1033400:intron | 40.0% |
| ! | GCGGAAATTTTTCTCTCAGA+TGG | + | chr7_1:68432151-68432170 | Msa1033400:intron | 40.0% |
| CAAGTATGAGTCGATGTGTA+TGG | + | chr7_1:68432254-68432273 | Msa1033400:CDS | 40.0% | |
| TTGTTGGGGAAACTAATGCA+AGG | + | chr7_1:68432334-68432353 | Msa1033400:CDS | 40.0% | |
| AAGCATCCGCATCATAAACA+AGG | - | chr7_1:68432527-68432546 | None:intergenic | 40.0% | |
| TTGCATGAGGATGGTTTACA+GGG | + | chr7_1:68432545-68432564 | Msa1033400:three_prime_UTR | 40.0% | |
| AGGTCTATGATCATGGGGTA+AGG | + | chr7_1:68426796-68426815 | Msa1033400:intron | 45.0% | |
| CAAAGAGAGTCAATGTGTGG+GGG | + | chr7_1:68427397-68427416 | Msa1033400:intron | 45.0% | |
| TTTCAAGCTCGACTCAACAC+TGG | + | chr7_1:68427528-68427547 | Msa1033400:intron | 45.0% | |
| !!! | TCCTTAGCCTTGGGGTTTTT+CGG | + | chr7_1:68427904-68427923 | Msa1033400:intron | 45.0% |
| !! | TGGGTTAGGGTCAAGTTTTG+TGG | + | chr7_1:68427939-68427958 | Msa1033400:intron | 45.0% |
| !! | GGGTTAGGGTCAAGTTTTGT+GGG | + | chr7_1:68427940-68427959 | Msa1033400:intron | 45.0% |
| ! | AACAAAGGTACGGGTACGTT+AGG | + | chr7_1:68428756-68428775 | Msa1033400:intron | 45.0% |
| GGAACTGGCAGTACATACAA+TGG | - | chr7_1:68429079-68429098 | None:intergenic | 45.0% | |
| TACTCTCAGGGTACGCATAA+CGG | - | chr7_1:68429206-68429225 | None:intergenic | 45.0% | |
| TTTGCAAAACGTACCCGTAC+CGG | - | chr7_1:68429332-68429351 | None:intergenic | 45.0% | |
| GAGGAAGATTGACACTTCCA+AGG | - | chr7_1:68429474-68429493 | None:intergenic | 45.0% | |
| TGCCAAATGCCTCAATTAGG+CGG | - | chr7_1:68429690-68429709 | None:intergenic | 45.0% | |
| !! | TAGCCTTATCCATGTGCACA+AGG | + | chr7_1:68429849-68429868 | Msa1033400:intron | 45.0% |
| TATATGCGGGCCTTACAGTT+TGG | + | chr7_1:68430269-68430288 | Msa1033400:CDS | 45.0% | |
| CCTGTCTTCACCAAACTGTA+AGG | - | chr7_1:68430282-68430301 | None:intergenic | 45.0% | |
| ! | CCTTACAGTTTGGTGAAGAC+AGG | + | chr7_1:68430279-68430298 | Msa1033400:CDS | 45.0% |
| GAAAGCAGCAAGGGTAAACT+GGG | + | chr7_1:68430314-68430333 | Msa1033400:CDS | 45.0% | |
| ATGCTGATCGATGTCTGCTT+TGG | + | chr7_1:68430475-68430494 | Msa1033400:CDS | 45.0% | |
| TGCTGATCGATGTCTGCTTT+GGG | + | chr7_1:68430476-68430495 | Msa1033400:CDS | 45.0% | |
| AATTTGTAACTGTCAGCGCC+AGG | - | chr7_1:68431062-68431081 | None:intergenic | 45.0% | |
| ATGGAAATTCCCAGACCTAC+AGG | - | chr7_1:68431515-68431534 | None:intergenic | 45.0% | |
| GATAGCATATGCACTGAAGC+AGG | - | chr7_1:68432281-68432300 | None:intergenic | 45.0% | |
| GCACCTGAGCTCATATTGTT+GGG | + | chr7_1:68432319-68432338 | Msa1033400:CDS | 45.0% | |
| CACCTGAGCTCATATTGTTG+GGG | + | chr7_1:68432320-68432339 | Msa1033400:CDS | 45.0% | |
| TTCCCCAACAATATGAGCTC+AGG | - | chr7_1:68432325-68432344 | None:intergenic | 45.0% | |
| CTTGCATGAGGATGGTTTAC+AGG | + | chr7_1:68432544-68432563 | Msa1033400:three_prime_UTR | 45.0% | |
| TGGTTTACAGGGAACCATCA+TGG | + | chr7_1:68432556-68432575 | Msa1033400:three_prime_UTR | 45.0% | |
| TTGTGTAGGTAGCATTGCTC+TGG | - | chr7_1:68432595-68432614 | None:intergenic | 45.0% | |
| !!! | AAATATTTATTTTAACATTA+TGG | + | chr7_1:68429991-68430010 | Msa1033400:intron | 5.0% |
| TAGGGGTAGCAACGTGTGTA+AGG | + | chr7_1:68426898-68426917 | Msa1033400:intron | 50.0% | |
| GAGTCAATGTGTGGGGGATT+TGG | + | chr7_1:68427403-68427422 | Msa1033400:intron | 50.0% | |
| !! | CATTTGCTCGCAGGGCATTT+TGG | + | chr7_1:68427855-68427874 | Msa1033400:intron | 50.0% |
| !! | TCGCAGGGCATTTTGGACTT+TGG | + | chr7_1:68427862-68427881 | Msa1033400:intron | 50.0% |
| ! | ATTGCGGACTCCTTAGCCTT+GGG | + | chr7_1:68427895-68427914 | Msa1033400:intron | 50.0% |
| ACCGAAAAACCCCAAGGCTA+AGG | - | chr7_1:68427908-68427927 | None:intergenic | 50.0% | |
| TAGGAGACCGAAAAACCCCA+AGG | - | chr7_1:68427914-68427933 | None:intergenic | 50.0% | |
| GTAGGAGAATTGCAAGGCTG+TGG | + | chr7_1:68428465-68428484 | Msa1033400:intron | 50.0% | |
| AGCCATGAAGCTGTGTTGCA+CGG | + | chr7_1:68428678-68428697 | Msa1033400:intron | 50.0% | |
| TTGCAAAACGTACCCGTACC+GGG | - | chr7_1:68429331-68429350 | None:intergenic | 50.0% | |
| TCAATGTGCAGGGTGTGAGA+AGG | - | chr7_1:68429563-68429582 | None:intergenic | 50.0% | |
| TCTCACACCCTGCACATTGA+AGG | + | chr7_1:68429563-68429582 | Msa1033400:intron | 50.0% | |
| TCCAGCACCTTCAATGTGCA+GGG | - | chr7_1:68429573-68429592 | None:intergenic | 50.0% | |
| CAACGAAGGCAGTCCATAGT+TGG | + | chr7_1:68429598-68429617 | Msa1033400:intron | 50.0% | |
| ATGCCTCAATTAGGCGGCTA+GGG | - | chr7_1:68429684-68429703 | None:intergenic | 50.0% | |
| AATGCCTCAATTAGGCGGCT+AGG | - | chr7_1:68429685-68429704 | None:intergenic | 50.0% | |
| ! | AGCCGCCTAATTGAGGCATT+TGG | + | chr7_1:68429685-68429704 | Msa1033400:intron | 50.0% |
| GTGCCTTGTGCACATGGATA+AGG | - | chr7_1:68429855-68429874 | None:intergenic | 50.0% | |
| GAACAAGTGCCTTGTGCACA+TGG | - | chr7_1:68429861-68429880 | None:intergenic | 50.0% | |
| ! | GCAGGGACTACTCTGGAAAT+TGG | + | chr7_1:68430131-68430150 | Msa1033400:intron | 50.0% |
| GGAAAGCAGCAAGGGTAAAC+TGG | + | chr7_1:68430313-68430332 | Msa1033400:CDS | 50.0% | |
| !! | ACTAGTGTCGATGTGCTGCA+AGG | + | chr7_1:68430358-68430377 | Msa1033400:CDS | 50.0% |
| ACTTGTACGAAAGTTGGGGG+TGG | - | chr7_1:68431736-68431755 | None:intergenic | 50.0% | |
| GGCACCTGAGCTCATATTGT+TGG | + | chr7_1:68432318-68432337 | Msa1033400:CDS | 50.0% | |
| TGGGGAAACTAATGCAAGGC+TGG | + | chr7_1:68432338-68432357 | Msa1033400:CDS | 50.0% | |
| ATGATGCGGATGCTTGCATG+AGG | + | chr7_1:68432532-68432551 | Msa1033400:three_prime_UTR | 50.0% | |
| GAGATCTAGAGACTAGGGCC+TGG | + | chr7_1:68427680-68427699 | Msa1033400:intron | 55.0% | |
| TGGGTCAGCATTTGCTCGCA+GGG | + | chr7_1:68427847-68427866 | Msa1033400:intron | 55.0% | |
| GATTGCGGACTCCTTAGCCT+TGG | + | chr7_1:68427894-68427913 | Msa1033400:intron | 55.0% | |
| !! | TTGCGGACTCCTTAGCCTTG+GGG | + | chr7_1:68427896-68427915 | Msa1033400:intron | 55.0% |
| GCCATGAAGCTGTGTTGCAC+GGG | + | chr7_1:68428679-68428698 | Msa1033400:intron | 55.0% | |
| ACCCGTGCAACACAGCTTCA+TGG | - | chr7_1:68428683-68428702 | None:intergenic | 55.0% | |
| ACCTTGGTACGGTTACGGTG+CGG | - | chr7_1:68429235-68429254 | None:intergenic | 55.0% | |
| CATACGAGTACCAGTACCCG+CGG | + | chr7_1:68429301-68429320 | Msa1033400:intron | 55.0% | |
| ! | ACCCTGCACATTGAAGGTGC+TGG | + | chr7_1:68429569-68429588 | Msa1033400:intron | 55.0% |
| CTCCAGCACCTTCAATGTGC+AGG | - | chr7_1:68429574-68429593 | None:intergenic | 55.0% | |
| TGCCTCAATTAGGCGGCTAG+GGG | - | chr7_1:68429683-68429702 | None:intergenic | 55.0% | |
| TTGTAACTGTCAGCGCCAGG+AGG | - | chr7_1:68431059-68431078 | None:intergenic | 55.0% | |
| TGCGGATGCTTGCATGAGGA+TGG | + | chr7_1:68432536-68432555 | Msa1033400:three_prime_UTR | 55.0% | |
| GCGAGCAAATGCTGACCCAC+AGG | - | chr7_1:68427846-68427865 | None:intergenic | 60.0% | |
| GTGGGTCAGCATTTGCTCGC+AGG | + | chr7_1:68427846-68427865 | Msa1033400:intron | 60.0% | |
| GAAGCTGTGTTGCACGGGTG+CGG | + | chr7_1:68428684-68428703 | Msa1033400:intron | 60.0% | |
| AAGCTGTGTTGCACGGGTGC+GGG | + | chr7_1:68428685-68428704 | Msa1033400:intron | 60.0% | |
| TACGGTACCCGGTATGGGTG+CGG | + | chr7_1:68428708-68428727 | Msa1033400:intron | 60.0% | |
| ATGGGTGCGGGTACGGGATA+CGG | + | chr7_1:68428721-68428740 | Msa1033400:intron | 60.0% | |
| TTGGTACGGTTACGGTGCGG+CGG | - | chr7_1:68429232-68429251 | None:intergenic | 60.0% | |
| !! | CGCGGGTACTGGTACTCGTA+TGG | - | chr7_1:68429303-68429322 | None:intergenic | 60.0% |
| ! | GGTGCTGGAGACTGCAACGA+AGG | + | chr7_1:68429584-68429603 | Msa1033400:intron | 60.0% |
| CTCAATTAGGCGGCTAGGGG+TGG | - | chr7_1:68429680-68429699 | None:intergenic | 60.0% | |
| CACCCCTAGCCGCCTAATTG+AGG | + | chr7_1:68429678-68429697 | Msa1033400:intron | 60.0% | |
| GGCAGAAGCCTAACCTACCC+TGG | - | chr7_1:68431023-68431042 | None:intergenic | 60.0% | |
| GTGTTGCACGGGTGCGGGTA+CGG | + | chr7_1:68428690-68428709 | Msa1033400:intron | 65.0% | |
| TGCGGGTACGGTACCCGGTA+TGG | + | chr7_1:68428702-68428721 | Msa1033400:intron | 65.0% | |
| GCGGGTACGGTACCCGGTAT+GGG | + | chr7_1:68428703-68428722 | Msa1033400:intron | 65.0% | |
| ACGGTACCCGGTATGGGTGC+GGG | + | chr7_1:68428709-68428728 | Msa1033400:intron | 65.0% | |
| ACCCGGTATGGGTGCGGGTA+CGG | + | chr7_1:68428714-68428733 | Msa1033400:intron | 65.0% | |
| TCCCGTACCCGCACCCATAC+CGG | - | chr7_1:68428719-68428738 | None:intergenic | 65.0% | |
| GTGCGGCGGTGGTACTCTCA+GGG | - | chr7_1:68429218-68429237 | None:intergenic | 65.0% | |
| GCCGCACCGTAACCGTACCA+AGG | + | chr7_1:68429231-68429250 | Msa1033400:intron | 65.0% | |
| ! | ACCAGTACCCGCGGAGTACC+CGG | + | chr7_1:68429310-68429329 | Msa1033400:intron | 65.0% |
| ! | TACCCGCGGAGTACCCGGTA+CGG | + | chr7_1:68429315-68429334 | Msa1033400:intron | 65.0% |
| TACCCGTACCGGGTACTCCG+CGG | - | chr7_1:68429321-68429340 | None:intergenic | 65.0% | |
| ! | CCAGGAGGCACAGTACAGGC+TGG | - | chr7_1:68431044-68431063 | None:intergenic | 65.0% |
| CCAGCCTGTACTGTGCCTCC+TGG | + | chr7_1:68431041-68431060 | Msa1033400:intron | 65.0% | |
| ! | AGCGCCAGGAGGCACAGTAC+AGG | - | chr7_1:68431048-68431067 | None:intergenic | 65.0% |
| ACGGGTGCGGGTACGGTACC+CGG | + | chr7_1:68428697-68428716 | Msa1033400:intron | 70.0% | |
| CCCGTACCCGCACCCATACC+GGG | - | chr7_1:68428718-68428737 | None:intergenic | 70.0% | |
| CCCGGTATGGGTGCGGGTAC+GGG | + | chr7_1:68428715-68428734 | Msa1033400:intron | 70.0% | |
| GGTGCGGCGGTGGTACTCTC+AGG | - | chr7_1:68429219-68429238 | None:intergenic | 70.0% | |
| GTACGGTTACGGTGCGGCGG+TGG | - | chr7_1:68429229-68429248 | None:intergenic | 70.0% | |
| ACCGGGTACTCCGCGGGTAC+TGG | - | chr7_1:68429314-68429333 | None:intergenic | 70.0% | |
| ! | ACCCGCGGAGTACCCGGTAC+GGG | + | chr7_1:68429316-68429335 | Msa1033400:intron | 70.0% |
| ACCCGTACCGGGTACTCCGC+GGG | - | chr7_1:68429320-68429339 | None:intergenic | 70.0% | |
| ! | ACACGCGCGCGCGCGCGAAG+TGG | - | chr7_1:68427588-68427607 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 68426793 | 68432664 | 68426793 | ID=Msa1033400;Name=Msa1033400 |
| chr7_1 | mRNA | 68426793 | 68432664 | 68426793 | ID=Msa1033400-mRNA-1;Parent=Msa1033400;Name=Msa1033400-mRNA-1;_AED=0.30;_eAED=0.31;_QI=0|0.75|0.55|1|0.62|0.44|9|250|244 |
| chr7_1 | exon | 68426793 | 68426797 | 68426793 | ID=Msa1033400-mRNA-1:exon:15987;Parent=Msa1033400-mRNA-1 |
| chr7_1 | exon | 68428264 | 68428384 | 68428264 | ID=Msa1033400-mRNA-1:exon:15988;Parent=Msa1033400-mRNA-1 |
| chr7_1 | exon | 68428469 | 68428516 | 68428469 | ID=Msa1033400-mRNA-1:exon:15989;Parent=Msa1033400-mRNA-1 |
| chr7_1 | exon | 68428604 | 68428609 | 68428604 | ID=Msa1033400-mRNA-1:exon:15990;Parent=Msa1033400-mRNA-1 |
| chr7_1 | exon | 68430236 | 68430379 | 68430236 | ID=Msa1033400-mRNA-1:exon:15991;Parent=Msa1033400-mRNA-1 |
| chr7_1 | exon | 68430475 | 68430569 | 68430475 | ID=Msa1033400-mRNA-1:exon:15992;Parent=Msa1033400-mRNA-1 |
| chr7_1 | exon | 68431286 | 68431352 | 68431286 | ID=Msa1033400-mRNA-1:exon:15993;Parent=Msa1033400-mRNA-1 |
| chr7_1 | exon | 68431519 | 68431594 | 68431519 | ID=Msa1033400-mRNA-1:exon:15994;Parent=Msa1033400-mRNA-1 |
| chr7_1 | exon | 68432242 | 68432664 | 68432242 | ID=Msa1033400-mRNA-1:exon:15995;Parent=Msa1033400-mRNA-1 |
| chr7_1 | CDS | 68426793 | 68426797 | 68426793 | ID=Msa1033400-mRNA-1:cds;Parent=Msa1033400-mRNA-1 |
| chr7_1 | CDS | 68428264 | 68428384 | 68428264 | ID=Msa1033400-mRNA-1:cds;Parent=Msa1033400-mRNA-1 |
| chr7_1 | CDS | 68428469 | 68428516 | 68428469 | ID=Msa1033400-mRNA-1:cds;Parent=Msa1033400-mRNA-1 |
| chr7_1 | CDS | 68428604 | 68428609 | 68428604 | ID=Msa1033400-mRNA-1:cds;Parent=Msa1033400-mRNA-1 |
| chr7_1 | CDS | 68430236 | 68430379 | 68430236 | ID=Msa1033400-mRNA-1:cds;Parent=Msa1033400-mRNA-1 |
| chr7_1 | CDS | 68430475 | 68430569 | 68430475 | ID=Msa1033400-mRNA-1:cds;Parent=Msa1033400-mRNA-1 |
| chr7_1 | CDS | 68431286 | 68431352 | 68431286 | ID=Msa1033400-mRNA-1:cds;Parent=Msa1033400-mRNA-1 |
| chr7_1 | CDS | 68431519 | 68431594 | 68431519 | ID=Msa1033400-mRNA-1:cds;Parent=Msa1033400-mRNA-1 |
| chr7_1 | CDS | 68432242 | 68432414 | 68432242 | ID=Msa1033400-mRNA-1:cds;Parent=Msa1033400-mRNA-1 |
| chr7_1 | three_prime_UTR | 68432415 | 68432664 | 68432415 | ID=Msa1033400-mRNA-1:three_prime_utr;Parent=Msa1033400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
