AlfalfaGEDB | Msa1073080

M. sativa cultivar zhongmu-4 / Msa1073080

KEGG: K21848
GO: -
PFAM: PF04161.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1073080	XP_003624961.2	82.869	251	20	1	14	241	1	251	9.16e-117	344

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1073080	sp\|Q5MK24\|ARV1_ARATH	42.308	234	108	4	16	225	6	236	8.27e-47	158

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1073080	G7L5Y4	82.869	251	20	1	14	241	1	251	4.38e-117	344

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0032470	Msa1073080	0.800410	1.460376e-48	-8.615850e-47
Msa0033110	Msa1073080	0.806212	9.178547e-50	-8.615850e-47
Msa0033260	Msa1073080	0.808915	2.449316e-50	-8.615850e-47
Msa0051020	Msa1073080	0.801893	7.263144e-49	-8.615850e-47
Msa0079070	Msa1073080	0.814734	1.325126e-51	-8.615850e-47
Msa0083280	Msa1073080	0.824387	8.295816e-54	-8.615850e-47
Msa0089750	Msa1073080	0.803734	3.027090e-49	-8.615850e-47
Msa0091410	Msa1073080	0.801827	7.493856e-49	-8.615850e-47
Msa0101270	Msa1073080	0.808796	2.597141e-50	-8.615850e-47
Msa0148080	Msa1073080	0.804189	2.433627e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1073080	MtrunA17_Chr7g0255981	82.869	251	20	1	14	241	1	251	8.42e-121	344

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1073080	AT1G01020.1	42.308	234	108	4	16	225	6	236	8.41e-48	158
Msa1073080	AT4G01510.1	43.519	216	98	3	18	213	8	219	1.67e-41	142
Msa1073080	AT4G01510.5	38.306	248	97	5	18	213	8	251	3.03e-38	134
Msa1073080	AT4G01510.3	42.632	190	85	3	18	187	8	193	1.09e-31	115
Msa1073080	AT1G01020.2	39.560	182	86	4	16	176	6	184	1.91e-25	99.4
Msa1073080	AT1G01020.5	45.669	127	62	2	103	225	66	189	2.46e-25	99.4
Msa1073080	AT1G01020.3	45.669	127	62	2	103	225	104	227	1.91e-24	97.8
Msa1073080	AT1G01020.4	45.669	127	62	2	103	225	104	227	1.91e-24	97.8
Msa1073080	AT4G01510.9	45.070	142	71	3	72	213	27	161	1.87e-23	93.6
Msa1073080	AT4G01510.4	60.811	74	29	0	140	213	101	174	3.80e-23	93.2

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Find 50 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCATCCGCATCATAAACA+AGG	0.654350	7_2:+70428803	None:intergenic
AATTCCACTAATATTTGTGT+AGG	0.607919	7_2:+70428721	None:intergenic
ACTAGTGTCGATGTGCTGCA+AGG	0.626966	7_2:-70430969	Msa1073080:intron
ATAATGAAGATCACAGAAGA+TGG	0.495414	7_2:+70429796	None:intergenic
ATACATAGAATGTGAAATCA+TGG	0.566336	7_2:-70432833	Msa1073080:intron
ATATATCAATCAGTGTCTCC+AGG	0.564329	7_2:-70430779	Msa1073080:intron
ATGATGCGGATGCTTGCATG+AGG	0.667696	7_2:-70428795	Msa1073080:three_prime_UTR
ATGCTGATCGATGTCTGCTT+TGG	0.371861	7_2:-70430852	Msa1073080:CDS
CAAGTATGAGTCGATGTGTA+TGG	0.465961	7_2:-70429073	Msa1073080:CDS
CACCTGAGCTCATATTGTTG+GGG	0.620188	7_2:-70429007	Msa1073080:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAACATGAGTTCCATCATTA+TGG	+	chr7_2:70428733-70428752	None:intergenic	30.0%
AAGCATAATGCAAGAAATAG+CGG	-	chr7_2:70428861-70428880	Msa1073080:three_prime_UTR	30.0%
CCAATTCTTAAACTACATGA+AGG	+	chr7_2:70428952-70428971	None:intergenic	30.0%
CCTTCATGTAGTTTAAGAAT+TGG	-	chr7_2:70428949-70428968	Msa1073080:CDS	30.0%
TTAATAACTGGTCATTGAGA+CGG	+	chr7_2:70428993-70429012	None:intergenic	30.0%
GTACTATGTGCCTTAAATTA+GGG	+	chr7_2:70429202-70429221	None:intergenic	30.0%
AGTACTATGTGCCTTAAATT+AGG	+	chr7_2:70429203-70429222	None:intergenic	30.0%
ACTTAAATTGAACCCAAAAG+GGG	+	chr7_2:70429382-70429401	None:intergenic	30.0%
GACTTAAATTGAACCCAAAA+GGG	+	chr7_2:70429383-70429402	None:intergenic	30.0%
AGACTTAAATTGAACCCAAA+AGG	+	chr7_2:70429384-70429403	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	70428685	70434559	70428685	ID=Msa1073080;Name=Msa1073080
chr7_2	mRNA	70428685	70434559	70428685	ID=Msa1073080-mRNA-1;Parent=Msa1073080;Name=Msa1073080-mRNA-1;_AED=0.30;_eAED=0.31;_QI=0\|0.75\|0.55\|1\|0.62\|0.44\|9\|250\|244
chr7_2	exon	70428685	70429107	70428685	ID=Msa1073080-mRNA-1:exon:15896;Parent=Msa1073080-mRNA-1
chr7_2	exon	70429755	70429830	70429755	ID=Msa1073080-mRNA-1:exon:15895;Parent=Msa1073080-mRNA-1
chr7_2	exon	70429997	70430063	70429997	ID=Msa1073080-mRNA-1:exon:15894;Parent=Msa1073080-mRNA-1
chr7_2	exon	70430780	70430874	70430780	ID=Msa1073080-mRNA-1:exon:15893;Parent=Msa1073080-mRNA-1
chr7_2	exon	70430970	70431113	70430970	ID=Msa1073080-mRNA-1:exon:15892;Parent=Msa1073080-mRNA-1
chr7_2	exon	70432740	70432745	70432740	ID=Msa1073080-mRNA-1:exon:15891;Parent=Msa1073080-mRNA-1
chr7_2	exon	70432834	70432881	70432834	ID=Msa1073080-mRNA-1:exon:15890;Parent=Msa1073080-mRNA-1
chr7_2	exon	70432966	70433086	70432966	ID=Msa1073080-mRNA-1:exon:15889;Parent=Msa1073080-mRNA-1
chr7_2	exon	70434555	70434559	70434555	ID=Msa1073080-mRNA-1:exon:15888;Parent=Msa1073080-mRNA-1
chr7_2	CDS	70434555	70434559	70434555	ID=Msa1073080-mRNA-1:cds;Parent=Msa1073080-mRNA-1
chr7_2	CDS	70432966	70433086	70432966	ID=Msa1073080-mRNA-1:cds;Parent=Msa1073080-mRNA-1
chr7_2	CDS	70432834	70432881	70432834	ID=Msa1073080-mRNA-1:cds;Parent=Msa1073080-mRNA-1
chr7_2	CDS	70432740	70432745	70432740	ID=Msa1073080-mRNA-1:cds;Parent=Msa1073080-mRNA-1
chr7_2	CDS	70430970	70431113	70430970	ID=Msa1073080-mRNA-1:cds;Parent=Msa1073080-mRNA-1
chr7_2	CDS	70430780	70430874	70430780	ID=Msa1073080-mRNA-1:cds;Parent=Msa1073080-mRNA-1
chr7_2	CDS	70429997	70430063	70429997	ID=Msa1073080-mRNA-1:cds;Parent=Msa1073080-mRNA-1
chr7_2	CDS	70429755	70429830	70429755	ID=Msa1073080-mRNA-1:cds;Parent=Msa1073080-mRNA-1
chr7_2	CDS	70428935	70429107	70428935	ID=Msa1073080-mRNA-1:cds;Parent=Msa1073080-mRNA-1
chr7_2	three_prime_UTR	70428685	70428934	70428685	ID=Msa1073080-mRNA-1:three_prime_utr;Parent=Msa1073080-mRNA-1

Gene Sequence

>Msa1073080

ATGAGCTGGGTTTCTGGATTTGTAATTTTATCATCACCAATGGGGTATAGATGTATTCAATGTGGTTTTCCCATCAATACACTTTATTTTCAGTATTCTCTGGGTAACATTCGCTTGATGAAATGTGAGAATTGCAAGGCTGTGGCAGATGAATACATAGAATGTGAAATCATGATTATTAGCATAAATTTTAGTTTTTGTTTTTCAAAAGCATATATGCGGGCCTTACAGTTTGGTGAAGACAGGTATTTGATCTTGGAAAGCAGCAAGGGTAAACTGGGTTCATCAATGAGCTACTCATCACTAGTGTCGATGTGCTGCAAGATGCTGATCGATGTCTGCTTTGGGAACTTTATGTTTCTTTTAACCTTCTTCTTTATGGTCAAGACGTTTCTTCATATATCAATCAGTGTCTCCAGGTGCAATGACATTTTGCTTGGTCTCTTGATTTCATGTTACTCCAAGATTTTTCTTATTGCCATGACGGTCTGGGAATTTCCATCTTCTGTGATCTTCATTATTGAATTATTTTGCTTATCATCTAATGCAGTAGCATTAAAAGTGATGACGGAGTCAAGTATGAGTCGATGTGTATGGACCTGCTTCAGTGCATATGCTATCAAGTTGTTTTTCATTCAGGCACCTGAGCTCATATTGTTGGGGAAACTAATGCAAGGCTGGAGTCAAATGCCCTTCTCACTGTCTTTAAAGTCAGTTTTTATTTGTTTCTTTTAG

Protein sequence

>Msa1073080

MSWVSGFVILSSPMGYRCIQCGFPINTLYFQYSLGNIRLMKCENCKAVADEYIECEIMIISINFSFCFSKAYMRALQFGEDRYLILESSKGKLGSSMSYSSLVSMCCKMLIDVCFGNFMFLLTFFFMVKTFLHISISVSRCNDILLGLLISCYSKIFLIAMTVWEFPSSVIFIIELFCLSSNAVALKVMTESSMSRCVWTCFSAYAIKLFFIQAPELILLGKLMQGWSQMPFSLSLKSVFICFF*