AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1360440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1360440 MtrunA17_Chr1g0154411 97.727 396 8 1 1 396 75 469 0.0 801
Msa1360440 MtrunA17_Chr8g0361841 41.528 301 160 5 102 387 161 460 1.12e-73 237
Msa1360440 MtrunA17_Chr1g0200501 40.000 305 160 6 102 387 395 695 2.35e-68 229
Msa1360440 MtrunA17_Chr4g0047251 40.129 309 170 6 102 396 166 473 8.02e-66 218
Msa1360440 MtrunA17_Chr8g0378731 37.075 294 180 3 101 390 158 450 1.48e-63 211
Msa1360440 MtrunA17_Chr2g0282261 39.189 296 169 5 102 387 206 500 6.80e-62 209
Msa1360440 MtrunA17_Chr2g0317511 40.656 305 153 9 102 387 227 522 4.56e-60 204
Msa1360440 MtrunA17_Chr2g0285981 32.993 294 182 9 92 375 107 395 2.28e-38 143
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1360440 AT5G42660.1 69.444 396 114 2 2 394 69 460 0.0 590
Msa1360440 AT2G02910.2 42.904 303 160 5 102 393 155 455 1.73e-76 244
Msa1360440 AT2G02910.1 42.904 303 160 5 102 393 155 455 1.73e-76 244
Msa1360440 AT4G38500.1 36.812 345 208 5 51 390 107 446 3.65e-70 229
Msa1360440 AT1G34550.2 40.000 305 160 6 102 387 327 627 7.70e-70 231
Msa1360440 AT1G34550.1 40.000 305 160 6 102 387 421 721 2.25e-69 232
Msa1360440 AT4G09630.2 39.677 310 164 6 102 392 381 686 6.25e-68 228
Msa1360440 AT4G09630.1 39.677 310 164 6 102 392 396 701 6.50e-68 228
Msa1360440 AT1G53040.2 41.077 297 163 5 102 387 187 482 1.10e-65 218
Msa1360440 AT1G53040.1 41.077 297 163 5 102 387 187 482 1.10e-65 218
Msa1360440 AT1G53040.6 41.077 297 163 5 102 387 187 482 1.10e-65 218
Msa1360440 AT1G53040.3 41.438 292 159 5 102 382 187 477 1.92e-65 216
Msa1360440 AT1G53040.4 41.438 292 159 5 102 382 187 477 1.92e-65 216
Msa1360440 AT1G28240.1 39.262 298 166 7 102 387 214 508 2.13e-62 211
Msa1360440 AT1G53040.5 40.465 215 120 3 102 309 187 400 9.46e-46 163
Msa1360440 AT5G46220.1 30.345 290 188 7 81 360 97 382 1.43e-36 139

Find 98 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAAGCAAAATACTCTATT+TGG 0.077140 tig0017062:+1773 Msa1360440:CDS
CAAAGCTGATTTAGTTAAAT+TGG 0.173985 tig0017062:+2529 Msa1360440:exon
TCCAAAGCAAAATCTCTTTC+TGG 0.212926 tig0017062:-2732 None:intergenic
CTAGTGGGTCCCTCCTAAAT+TGG 0.222026 tig0017062:-1810 None:intergenic
TTCAACCTTTGATCAGAAAA+AGG 0.262613 tig0017062:-1441 None:intergenic
CCTGTAGACAAGAGATTTAA+TGG 0.266147 tig0017062:+1997 Msa1360440:CDS
GCTAATGAACAAATGAAATA+AGG 0.306810 tig0017062:-2588 None:intergenic
TATCTCTTTCCTCAAATGTT+TGG 0.307680 tig0017062:-884 None:intergenic
CACATATACCTGATTTGAAT+TGG 0.324506 tig0017062:-2610 None:intergenic
TTCATTAGCCAATTCAAATC+AGG 0.343259 tig0017062:+2602 Msa1360440:three_prime_UTR
GCGACTGATGCGTCTTTAAT+AGG 0.361138 tig0017062:+798 Msa1360440:CDS
AGGTTTGCTATGTAGCATTC+TGG 0.362293 tig0017062:+1322 Msa1360440:intron
GGTCGCAGAGTTGGGGATAA+TGG 0.363714 tig0017062:+1378 Msa1360440:CDS
GTGGCGTGTTATTGTCGTTC+AGG 0.366914 tig0017062:+1413 Msa1360440:CDS
GTTGTATCTACTTGTGCATT+TGG 0.368333 tig0017062:+1161 Msa1360440:CDS
TAGACTCCAAGTCCCAATTT+AGG 0.368651 tig0017062:+1797 Msa1360440:CDS
AATTAGTGGGTCGCAGAGTT+GGG 0.373736 tig0017062:+1370 Msa1360440:CDS
CCATTAAATCTCTTGTCTAC+AGG 0.375251 tig0017062:-1997 None:intergenic
ACGAGCTCCATGTTCTGATA+TGG 0.376444 tig0017062:-1875 None:intergenic
GTTGGGGATAATGGATTTGT+TGG 0.377221 tig0017062:+1387 Msa1360440:CDS
TTCAACCGCCACAGAACATA+TGG 0.378529 tig0017062:-2418 None:intergenic
GAAGAATCTAGTTTACCTAT+TGG 0.384777 tig0017062:+756 Msa1360440:CDS
ACTAAAAGCGCAGGAATTAG+TGG 0.395475 tig0017062:+1356 Msa1360440:CDS
TCTCCTCTCATAATCGGTAT+AGG 0.396549 tig0017062:+2659 Msa1360440:three_prime_UTR
TCAAGCAAAATACTCTATTT+GGG 0.399723 tig0017062:+1774 Msa1360440:CDS
CTAATCTATTGATGTGCGTC+TGG 0.401746 tig0017062:+2350 Msa1360440:CDS
TCTTCCTCTCCTCTCATAAT+CGG 0.404697 tig0017062:+2653 Msa1360440:three_prime_UTR
ACAGTGCGAATGGTGGGTTT+AGG 0.412123 tig0017062:+1096 Msa1360440:CDS
AGTTGCACTTCAACTTCCTC+TGG 0.414058 tig0017062:-1949 None:intergenic
GAATTAGTGGGTCGCAGAGT+TGG 0.426550 tig0017062:+1369 Msa1360440:CDS
AAGAGATTTAATGGAAAGAA+AGG 0.439466 tig0017062:+2006 Msa1360440:CDS
TGTCTGCACTCGCAAGGATC+TGG 0.451591 tig0017062:+2468 Msa1360440:CDS
GTGTGTTGGAAGCGCTCCTT+TGG 0.451902 tig0017062:+1833 Msa1360440:CDS
AGGTGGTTCGCTTCACGTCT+AGG 0.456871 tig0017062:+2380 Msa1360440:CDS
TAGTGGGTCCCTCCTAAATT+GGG 0.459505 tig0017062:-1809 None:intergenic
TACTGGAAACCAAACATTTG+AGG 0.460309 tig0017062:+875 Msa1360440:CDS
CTGAATCAATACAGAAAAGA+TGG 0.467593 tig0017062:+1970 Msa1360440:CDS
GTCAGAGGCTTCACTTAAGA+AGG 0.470559 tig0017062:+1217 Msa1360440:CDS
GGTTTGCTATGTAGCATTCT+GGG 0.477968 tig0017062:+1323 Msa1360440:intron
AAACTACGACGGCACATTGT+GGG 0.478159 tig0017062:+1069 Msa1360440:CDS
ATGAGGCTAAGGCCGTTGTC+AGG 0.480704 tig0017062:+1911 Msa1360440:CDS
GTCCCTCCTAAATTGGGACT+TGG 0.482377 tig0017062:-1803 None:intergenic
CACATCAATAGATTAGTTAG+TGG 0.489792 tig0017062:-2343 None:intergenic
ATAATGGATTTGTTGGAAAG+TGG 0.493171 tig0017062:+1394 Msa1360440:CDS
GGTGGTTCGCTTCACGTCTA+GGG 0.510231 tig0017062:+2381 Msa1360440:CDS
GTGAAGCCTCTGTTATCGTC+AGG 0.511246 tig0017062:+2311 Msa1360440:CDS
TTACTATGAGCTGTTTGAGT+AGG 0.512906 tig0017062:+2702 Msa1360440:three_prime_UTR
TAACTAAATCAGCTTTGCAA+TGG 0.522702 tig0017062:-2523 None:intergenic
ATATACAAGACTTTACCAAT+AGG 0.522988 tig0017062:-771 None:intergenic
TAAACTAGATTCTTCTTCCA+CGG 0.523311 tig0017062:-748 None:intergenic
GATGATCTCTATCAACCGAT+TGG 0.532985 tig0017062:+1191 Msa1360440:CDS
GTATCTACTTGTGCATTTGG+TGG 0.539522 tig0017062:+1164 Msa1360440:CDS
AGATCCTTGCGAGTGCAGAC+AGG 0.541955 tig0017062:-2466 None:intergenic
AAACTAGATTCTTCTTCCAC+GGG 0.546495 tig0017062:-747 None:intergenic
CAAGGATCTGGTCAATAGCA+TGG 0.556262 tig0017062:+2480 Msa1360440:CDS
GAGGGACCCACTAGGTGTGT+TGG 0.558276 tig0017062:+1819 Msa1360440:CDS
TCTACTTGTGCATTTGGTGG+CGG 0.565708 tig0017062:+1167 Msa1360440:CDS
TAAGTTAGAAAACTACAGCT+AGG 0.566181 tig0017062:-2563 None:intergenic
GTACAGAACTTGTGCGCCAA+AGG 0.567215 tig0017062:-1849 None:intergenic
TAGTGTCTATGATGAGGCTA+AGG 0.569258 tig0017062:+1900 Msa1360440:CDS
GTTCCCTGTCTGCACTCGCA+AGG 0.571226 tig0017062:+2462 Msa1360440:CDS
GAAGATAAAAGTTTCATGCA+AGG 0.574340 tig0017062:+1128 Msa1360440:CDS
ACTGATGCGTCTTTAATAGG+AGG 0.575647 tig0017062:+801 Msa1360440:CDS
TTGCTTGAGGGAAAAGGCGA+TGG 0.577341 tig0017062:-1759 None:intergenic
GAAGCCTCTGACATTCCAAT+CGG 0.578839 tig0017062:-1206 None:intergenic
GTGCGTCTGGTTTAATGAGG+TGG 0.582996 tig0017062:+2363 Msa1360440:CDS
TCAACCGCCACAGAACATAT+GGG 0.583405 tig0017062:-2417 None:intergenic
TGAAATCACACTAAAAGCGC+AGG 0.586944 tig0017062:+1347 Msa1360440:CDS
ATTAGTGGGTCGCAGAGTTG+GGG 0.587159 tig0017062:+1371 Msa1360440:CDS
ACTCCAAGTCCCAATTTAGG+AGG 0.588616 tig0017062:+1800 Msa1360440:CDS
AAGGATCTGGTCAATAGCAT+GGG 0.590506 tig0017062:+2481 Msa1360440:CDS
GGTTCTACAGTGCGAATGGT+GGG 0.594182 tig0017062:+1090 Msa1360440:CDS
GATCCTTGCGAGTGCAGACA+GGG 0.600367 tig0017062:-2465 None:intergenic
GAAACTACGACGGCACATTG+TGG 0.606798 tig0017062:+1068 Msa1360440:CDS
CAATTTAGGAGGGACCCACT+AGG 0.609024 tig0017062:+1811 Msa1360440:CDS
CTCCAAGTCCCAATTTAGGA+GGG 0.612198 tig0017062:+1801 Msa1360440:CDS
GGGTTCTACAGTGCGAATGG+TGG 0.617468 tig0017062:+1089 Msa1360440:CDS
AGCGCTTCCAACACACCTAG+TGG 0.619009 tig0017062:-1826 None:intergenic
GTTGAATGGTAAAATTCCCA+AGG 0.623439 tig0017062:+1458 Msa1360440:CDS
ATTGTCTCAATTGCGTGCAG+AGG 0.623452 tig0017062:+833 Msa1360440:CDS
CTAAAAGCGCAGGAATTAGT+GGG 0.625147 tig0017062:+1357 Msa1360440:CDS
TCGTAGTAGTGTCTATGATG+AGG 0.628284 tig0017062:+1894 Msa1360440:CDS
GATGTGCGTCTGGTTTAATG+AGG 0.632480 tig0017062:+2360 Msa1360440:CDS
CTGATGCGTCTTTAATAGGA+GGG 0.632733 tig0017062:+802 Msa1360440:CDS
TCAGCTTCCCATATGTTCTG+TGG 0.637981 tig0017062:+2410 Msa1360440:CDS
TGTGGGTTCTACAGTGCGAA+TGG 0.652523 tig0017062:+1086 Msa1360440:CDS
GCGCTTCCAACACACCTAGT+GGG 0.655267 tig0017062:-1825 None:intergenic
GCTTCCCATATGTTCTGTGG+CGG 0.655449 tig0017062:+2413 Msa1360440:CDS
GTACTTGCCATATCAGAACA+TGG 0.661039 tig0017062:+1868 Msa1360440:CDS
ATGAGAGGAGAGGAAGAGAG+AGG 0.663436 tig0017062:-2647 None:intergenic
TTTCATGCAAGGTTGCAAAG+TGG 0.666633 tig0017062:+1139 Msa1360440:CDS
TAACCTATACCGATTATGAG+AGG 0.674432 tig0017062:-2662 None:intergenic
TCAACCGATTGGAATGTCAG+AGG 0.688554 tig0017062:+1202 Msa1360440:CDS
TATACCGATTATGAGAGGAG+AGG 0.691482 tig0017062:-2657 None:intergenic
GTTATCGTAGAAATCTGTGT+CGG 0.699130 tig0017062:-2763 None:intergenic
TGAGCAACTAGAGATTCCCG+TGG 0.719886 tig0017062:+731 Msa1360440:CDS
ATGCTTCCTGACGATAACAG+AGG 0.723941 tig0017062:-2317 None:intergenic
ATAGGTGAAAGAAACTACGA+CGG 0.775814 tig0017062:+1058 Msa1360440:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTGATAAAACTTA+AGG + tig0017062:638-657 Msa1360440:intron 10.0%
!! TTATTATAAGTAATATAGTT+TGG + tig0017062:1019-1038 Msa1360440:intron 10.0%
!!! ACAAGTTTTAATTTATTTAC+TGG + tig0017062:858-877 Msa1360440:CDS 15.0%
!! ATGTGAATTAAAATTAATCT+GGG - tig0017062:949-968 None:intergenic 15.0%
!! AATGTGAATTAAAATTAATC+TGG - tig0017062:950-969 None:intergenic 15.0%
!! GATTCAACATTATAAAATAT+TGG - tig0017062:2269-2288 None:intergenic 15.0%
!!! ATTCAAGTTAGTTTTAACAA+TGG - tig0017062:69-88 None:intergenic 20.0%
!!! AAAATAAAGAAAAAGGGTTT+TGG - tig0017062:149-168 None:intergenic 20.0%
!! AAAACTATTATGAAAACTCT+AGG + tig0017062:451-470 Msa1360440:intron 20.0%
!! AAACTATTATGAAAACTCTA+GGG + tig0017062:452-471 Msa1360440:intron 20.0%
!! ATCATAAAGTGAATTCAAAT+AGG + tig0017062:554-573 Msa1360440:intron 20.0%
!!! TATTTTGATAAAACTTAAGG+AGG + tig0017062:641-660 Msa1360440:intron 20.0%
!! TTTCAATTGATATTGTTGAT+AGG + tig0017062:2138-2157 Msa1360440:intron 20.0%
! TATATGTTTGATTCCACTAT+TGG - tig0017062:302-321 None:intergenic 25.0%
! TATTATGTAGTAAAGAGAGT+AGG + tig0017062:338-357 Msa1360440:intron 25.0%
! AGTAAGGAAAGTAAATTAGA+TGG + tig0017062:375-394 Msa1360440:intron 25.0%
!!! GTTTTCCATTTAGTTTTTGT+AGG - tig0017062:436-455 None:intergenic 25.0%
!! GTTTGTAGAAATACTTTTGT+TGG + tig0017062:528-547 Msa1360440:intron 25.0%
! ATATACAAGACTTTACCAAT+AGG - tig0017062:774-793 None:intergenic 25.0%
! TATTTGCCAAATCTATTTAG+TGG + tig0017062:1294-1313 Msa1360440:intron 25.0%
! TATCAGCAAATGGAAAAATT+AGG - tig0017062:1609-1628 None:intergenic 25.0%
! ATGATTCAAATATCAGCAAA+TGG - tig0017062:1619-1638 None:intergenic 25.0%
! AACAAAAAAAGCTTTCTAAG+AGG - tig0017062:1686-1705 None:intergenic 25.0%
!!! AAATAGAGTATTTTGCTTGA+GGG - tig0017062:1774-1793 None:intergenic 25.0%
! TCAAGCAAAATACTCTATTT+GGG + tig0017062:1774-1793 Msa1360440:CDS 25.0%
! AAGAGATTTAATGGAAAGAA+AGG + tig0017062:2006-2025 Msa1360440:CDS 25.0%
! AAAATATGACAGCAAAATCT+TGG - tig0017062:2121-2140 None:intergenic 25.0%
! TTGATAAAAAGTTGAATCAG+TGG - tig0017062:2233-2252 None:intergenic 25.0%
!! CAAAGCTGATTTAGTTAAAT+TGG + tig0017062:2529-2548 Msa1360440:exon 25.0%
! GCTAATGAACAAATGAAATA+AGG - tig0017062:2591-2610 None:intergenic 25.0%
!!! AAGAAAAAGGGTTTTGGATT+GGG - tig0017062:143-162 None:intergenic 30.0%
!!! AAAGAAAAAGGGTTTTGGAT+TGG - tig0017062:144-163 None:intergenic 30.0%
!! AAAGTTAGTTGATTTGCTTG+CGG + tig0017062:209-228 Msa1360440:intron 30.0%
AAGGAAAGTAAATTAGATGG+AGG + tig0017062:378-397 Msa1360440:intron 30.0%
AGGAAAGTAAATTAGATGGA+GGG + tig0017062:379-398 Msa1360440:intron 30.0%
GAAGACCTACAAAAACTAAA+TGG + tig0017062:428-447 Msa1360440:intron 30.0%
TCTACAAACAACAACAATCA+AGG - tig0017062:517-536 None:intergenic 30.0%
GAAGTGAAATGAAAGAACTA+AGG - tig0017062:596-615 None:intergenic 30.0%
AGTTCTTTCATTTCACTTCT+AGG + tig0017062:597-616 Msa1360440:intron 30.0%
TTTGATAAAACTTAAGGAGG+CGG + tig0017062:644-663 Msa1360440:intron 30.0%
ACATGTGAGTTAATTCTATC+AGG + tig0017062:678-697 Msa1360440:intron 30.0%
TAAACTAGATTCTTCTTCCA+CGG - tig0017062:751-770 None:intergenic 30.0%
! GAAGAATCTAGTTTACCTAT+TGG + tig0017062:756-775 Msa1360440:CDS 30.0%
TATCTCTTTCCTCAAATGTT+TGG - tig0017062:887-906 None:intergenic 30.0%
GGTTTCTTTCTTCATTGTAT+AGG + tig0017062:1040-1059 Msa1360440:intron 30.0%
GAAGATAAAAGTTTCATGCA+AGG + tig0017062:1128-1147 Msa1360440:CDS 30.0%
TGCATACCACTAAATAGATT+TGG - tig0017062:1303-1322 None:intergenic 30.0%
AAATCTATTTAGTGGTATGC+AGG + tig0017062:1302-1321 Msa1360440:intron 30.0%
!! ATAATGGATTTGTTGGAAAG+TGG + tig0017062:1394-1413 Msa1360440:CDS 30.0%
! ATCTTCCTTTTTCTGATCAA+AGG + tig0017062:1436-1455 Msa1360440:CDS 30.0%
TTCAACCTTTGATCAGAAAA+AGG - tig0017062:1444-1463 None:intergenic 30.0%
! TTTTCTGATCAAAGGTTGAA+TGG + tig0017062:1444-1463 Msa1360440:CDS 30.0%
CATCAAAGATGTAATACCTT+GGG - tig0017062:1477-1496 None:intergenic 30.0%
ATGAAGTATAGAAAGAGAAG+CGG - tig0017062:1501-1520 None:intergenic 30.0%
!! CAAATAGAGTATTTTGCTTG+AGG - tig0017062:1775-1794 None:intergenic 30.0%
CTCAAGCAAAATACTCTATT+TGG + tig0017062:1773-1792 Msa1360440:CDS 30.0%
CTGAATCAATACAGAAAAGA+TGG + tig0017062:1970-1989 Msa1360440:CDS 30.0%
! CACATCAATAGATTAGTTAG+TGG - tig0017062:2346-2365 None:intergenic 30.0%
TAACTAAATCAGCTTTGCAA+TGG - tig0017062:2526-2545 None:intergenic 30.0%
TAAGTTAGAAAACTACAGCT+AGG - tig0017062:2566-2585 None:intergenic 30.0%
TTCATTAGCCAATTCAAATC+AGG + tig0017062:2602-2621 Msa1360440:three_prime_UTR 30.0%
! CACATATACCTGATTTGAAT+TGG - tig0017062:2613-2632 None:intergenic 30.0%
!!! AGAAAAAGGGTTTTGGATTG+GGG - tig0017062:142-161 None:intergenic 35.0%
! ACTAGAATTGATTCTTGACG+CGG - tig0017062:270-289 None:intergenic 35.0%
GAGGGTAGTTAAATCTCTAA+AGG + tig0017062:397-416 Msa1360440:intron 35.0%
! AGTTAAATCTCTAAAGGCTC+CGG + tig0017062:403-422 Msa1360440:intron 35.0%
! ACTCTAGGGATTAATGAGTT+TGG + tig0017062:466-485 Msa1360440:intron 35.0%
! TCTAGTTGCTCAAGTTTTTC+AGG - tig0017062:723-742 None:intergenic 35.0%
AAACTAGATTCTTCTTCCAC+GGG - tig0017062:750-769 None:intergenic 35.0%
TACTGGAAACCAAACATTTG+AGG + tig0017062:875-894 Msa1360440:CDS 35.0%
! GGAAAGAGATAGAAGTTTTG+AGG + tig0017062:896-915 Msa1360440:CDS 35.0%
!!! GATAGAAGTTTTGAGGTGAT+TGG + tig0017062:903-922 Msa1360440:intron 35.0%
ATAGGTGAAAGAAACTACGA+CGG + tig0017062:1058-1077 Msa1360440:intron 35.0%
GTTGTATCTACTTGTGCATT+TGG + tig0017062:1161-1180 Msa1360440:CDS 35.0%
GTTGAATGGTAAAATTCCCA+AGG + tig0017062:1458-1477 Msa1360440:CDS 35.0%
GCATCAAAGATGTAATACCT+TGG - tig0017062:1478-1497 None:intergenic 35.0%
TGAAGTATAGAAAGAGAAGC+GGG - tig0017062:1500-1519 None:intergenic 35.0%
!! CTTGTGAGAACATTTTGGTA+GGG - tig0017062:1583-1602 None:intergenic 35.0%
!! TCTTGTGAGAACATTTTGGT+AGG - tig0017062:1584-1603 None:intergenic 35.0%
! GGAATCTTGTGAGAACATTT+TGG - tig0017062:1588-1607 None:intergenic 35.0%
! AGTATTTTGCTTGAGGGAAA+AGG - tig0017062:1768-1787 None:intergenic 35.0%
CCATTAAATCTCTTGTCTAC+AGG - tig0017062:2000-2019 None:intergenic 35.0%
CCTGTAGACAAGAGATTTAA+TGG + tig0017062:1997-2016 Msa1360440:CDS 35.0%
AACAGACTAGATGAGAAGAT+TGG - tig0017062:2195-2214 None:intergenic 35.0%
!! TTTGCAATGGTTTTGCTTTG+CGG - tig0017062:2513-2532 None:intergenic 35.0%
! TAACCTATACCGATTATGAG+AGG - tig0017062:2665-2684 None:intergenic 35.0%
TTACTATGAGCTGTTTGAGT+AGG + tig0017062:2702-2721 Msa1360440:three_prime_UTR 35.0%
! TCCAGAAAGAGATTTTGCTT+TGG + tig0017062:2731-2750 Msa1360440:three_prime_UTR 35.0%
TCCAAAGCAAAATCTCTTTC+TGG - tig0017062:2735-2754 None:intergenic 35.0%
GTTATCGTAGAAATCTGTGT+CGG - tig0017062:2766-2785 None:intergenic 35.0%
TGTCGTTGTTGAAGCAATGT+TGG - tig0017062:12-31 None:intergenic 40.0%
!!! GAAAAAGGGTTTTGGATTGG+GGG - tig0017062:141-160 None:intergenic 40.0%
! TTTGAGAGTGTGTGTGTGTT+TGG + tig0017062:239-258 Msa1360440:intron 40.0%
! GGCGTGTAGATTTTGTAGTA+AGG + tig0017062:359-378 Msa1360440:intron 40.0%
! AGTTTTTGTAGGTCTTCCTC+CGG - tig0017062:425-444 None:intergenic 40.0%
! TTCACTTCTAGGAATGAGTG+AGG + tig0017062:608-627 Msa1360440:intron 40.0%
!!! AGTTGCTCAAGTTTTTCAGG+TGG - tig0017062:720-739 None:intergenic 40.0%
ACTGATGCGTCTTTAATAGG+AGG + tig0017062:801-820 Msa1360440:CDS 40.0%
CTGATGCGTCTTTAATAGGA+GGG + tig0017062:802-821 Msa1360440:CDS 40.0%
TTTCATGCAAGGTTGCAAAG+TGG + tig0017062:1139-1158 Msa1360440:CDS 40.0%
GTATCTACTTGTGCATTTGG+TGG + tig0017062:1164-1183 Msa1360440:CDS 40.0%
GATGATCTCTATCAACCGAT+TGG + tig0017062:1191-1210 Msa1360440:CDS 40.0%
!! AGGTTTGCTATGTAGCATTC+TGG + tig0017062:1322-1341 Msa1360440:intron 40.0%
!! GGTTTGCTATGTAGCATTCT+GGG + tig0017062:1323-1342 Msa1360440:intron 40.0%
! TGAAATCACACTAAAAGCGC+AGG + tig0017062:1347-1366 Msa1360440:CDS 40.0%
! ACTAAAAGCGCAGGAATTAG+TGG + tig0017062:1356-1375 Msa1360440:CDS 40.0%
! CTAAAAGCGCAGGAATTAGT+GGG + tig0017062:1357-1376 Msa1360440:CDS 40.0%
!! GTTGGGGATAATGGATTTGT+TGG + tig0017062:1387-1406 Msa1360440:CDS 40.0%
TGTTGTCTTCATTAACCCCA+TGG + tig0017062:1651-1670 Msa1360440:intron 40.0%
GTTGTCTTCATTAACCCCAT+GGG + tig0017062:1652-1671 Msa1360440:intron 40.0%
TTGTCTTCATTAACCCCATG+GGG + tig0017062:1653-1672 Msa1360440:intron 40.0%
!!! TTTCCTTTTTCAACCACGTG+TGG + tig0017062:1711-1730 Msa1360440:intron 40.0%
!!! TTCCTTTTTCAACCACGTGT+GGG + tig0017062:1712-1731 Msa1360440:intron 40.0%
TAGACTCCAAGTCCCAATTT+AGG + tig0017062:1797-1816 Msa1360440:CDS 40.0%
GTACTTGCCATATCAGAACA+TGG + tig0017062:1868-1887 Msa1360440:CDS 40.0%
TCGTAGTAGTGTCTATGATG+AGG + tig0017062:1894-1913 Msa1360440:CDS 40.0%
TAGTGTCTATGATGAGGCTA+AGG + tig0017062:1900-1919 Msa1360440:CDS 40.0%
!!! CGCTTTGTTTTTCCTGACAA+CGG - tig0017062:1926-1945 None:intergenic 40.0%
CTAATCTATTGATGTGCGTC+TGG + tig0017062:2350-2369 Msa1360440:CDS 40.0%
AAGGATCTGGTCAATAGCAT+GGG + tig0017062:2481-2500 Msa1360440:CDS 40.0%
TCTTCCTCTCCTCTCATAAT+CGG + tig0017062:2653-2672 Msa1360440:three_prime_UTR 40.0%
! TATACCGATTATGAGAGGAG+AGG - tig0017062:2660-2679 None:intergenic 40.0%
TCTCCTCTCATAATCGGTAT+AGG + tig0017062:2659-2678 Msa1360440:three_prime_UTR 40.0%
CCAGCAACAACATGAGTAGT+AGG - tig0017062:101-120 None:intergenic 45.0%
CCTACTACTCATGTTGTTGC+TGG + tig0017062:98-117 Msa1360440:CDS 45.0%
TAGTCGAGAGCAACCAATAG+TGG + tig0017062:286-305 Msa1360440:intron 45.0%
! TAAATCTCTAAAGGCTCCGG+AGG + tig0017062:406-425 Msa1360440:intron 45.0%
GCGACTGATGCGTCTTTAAT+AGG + tig0017062:798-817 Msa1360440:CDS 45.0%
ATTGTCTCAATTGCGTGCAG+AGG + tig0017062:833-852 Msa1360440:CDS 45.0%
!!! TGCTACTTGTTTTGCCCTAC+TGG + tig0017062:973-992 Msa1360440:intron 45.0%
ACAACCAAGCGTATCCAGTA+GGG - tig0017062:990-1009 None:intergenic 45.0%
TACAACCAAGCGTATCCAGT+AGG - tig0017062:991-1010 None:intergenic 45.0%
AAACTACGACGGCACATTGT+GGG + tig0017062:1069-1088 Msa1360440:CDS 45.0%
! TCTACTTGTGCATTTGGTGG+CGG + tig0017062:1167-1186 Msa1360440:CDS 45.0%
TCAACCGATTGGAATGTCAG+AGG + tig0017062:1202-1221 Msa1360440:CDS 45.0%
GAAGCCTCTGACATTCCAAT+CGG - tig0017062:1209-1228 None:intergenic 45.0%
GTCAGAGGCTTCACTTAAGA+AGG + tig0017062:1217-1236 Msa1360440:CDS 45.0%
! AATTAGTGGGTCGCAGAGTT+GGG + tig0017062:1370-1389 Msa1360440:CDS 45.0%
TGTCTTCATTAACCCCATGG+GGG + tig0017062:1654-1673 Msa1360440:intron 45.0%
!! TAAGAGGAAAGTACCCCCAT+GGG - tig0017062:1670-1689 None:intergenic 45.0%
ACTCCAAGTCCCAATTTAGG+AGG + tig0017062:1800-1819 Msa1360440:CDS 45.0%
CTCCAAGTCCCAATTTAGGA+GGG + tig0017062:1801-1820 Msa1360440:CDS 45.0%
! TAGTGGGTCCCTCCTAAATT+GGG - tig0017062:1812-1831 None:intergenic 45.0%
ACGAGCTCCATGTTCTGATA+TGG - tig0017062:1878-1897 None:intergenic 45.0%
GAAAAACAAAGCGAAGCCAG+AGG + tig0017062:1933-1952 Msa1360440:CDS 45.0%
AGTTGCACTTCAACTTCCTC+TGG - tig0017062:1952-1971 None:intergenic 45.0%
ATGCTTCCTGACGATAACAG+AGG - tig0017062:2320-2339 None:intergenic 45.0%
! GATGTGCGTCTGGTTTAATG+AGG + tig0017062:2360-2379 Msa1360440:CDS 45.0%
TCAGCTTCCCATATGTTCTG+TGG + tig0017062:2410-2429 Msa1360440:CDS 45.0%
TCAACCGCCACAGAACATAT+GGG - tig0017062:2420-2439 None:intergenic 45.0%
TTCAACCGCCACAGAACATA+TGG - tig0017062:2421-2440 None:intergenic 45.0%
CAAGGATCTGGTCAATAGCA+TGG + tig0017062:2480-2499 Msa1360440:CDS 45.0%
!! AAAAAAAAAATAAAGAAAAA+GGG - tig0017062:155-174 None:intergenic 5.0%
!! TAAAAAAAAAATAAAGAAAA+AGG - tig0017062:156-175 None:intergenic 5.0%
!!! TATTTTGATTTAAAAAATAT+CGG - tig0017062:2790-2809 None:intergenic 5.0%
TGAGCAACTAGAGATTCCCG+TGG + tig0017062:731-750 Msa1360440:CDS 50.0%
TTTGCCCTACTGGATACGCT+TGG + tig0017062:983-1002 Msa1360440:intron 50.0%
GAAACTACGACGGCACATTG+TGG + tig0017062:1068-1087 Msa1360440:CDS 50.0%
TGTGGGTTCTACAGTGCGAA+TGG + tig0017062:1086-1105 Msa1360440:CDS 50.0%
GGTTCTACAGTGCGAATGGT+GGG + tig0017062:1090-1109 Msa1360440:CDS 50.0%
!! ACAGTGCGAATGGTGGGTTT+AGG + tig0017062:1096-1115 Msa1360440:CDS 50.0%
! GAATTAGTGGGTCGCAGAGT+TGG + tig0017062:1369-1388 Msa1360440:CDS 50.0%
! ATTAGTGGGTCGCAGAGTTG+GGG + tig0017062:1371-1390 Msa1360440:CDS 50.0%
! GTGGCGTGTTATTGTCGTTC+AGG + tig0017062:1413-1432 Msa1360440:CDS 50.0%
!! AAGAGGAAAGTACCCCCATG+GGG - tig0017062:1669-1688 None:intergenic 50.0%
!! CTAAGAGGAAAGTACCCCCA+TGG - tig0017062:1671-1690 None:intergenic 50.0%
AGCCCACACGTGGTTGAAAA+AGG - tig0017062:1717-1736 None:intergenic 50.0%
! TTTTCAACCACGTGTGGGCT+TGG + tig0017062:1717-1736 Msa1360440:intron 50.0%
AAGATATCCAAGCCCACACG+TGG - tig0017062:1727-1746 None:intergenic 50.0%
TTGCTTGAGGGAAAAGGCGA+TGG - tig0017062:1762-1781 None:intergenic 50.0%
GTCCCTCCTAAATTGGGACT+TGG - tig0017062:1806-1825 None:intergenic 50.0%
! CTAGTGGGTCCCTCCTAAAT+TGG - tig0017062:1813-1832 None:intergenic 50.0%
CAATTTAGGAGGGACCCACT+AGG + tig0017062:1811-1830 Msa1360440:CDS 50.0%
GTACAGAACTTGTGCGCCAA+AGG - tig0017062:1852-1871 None:intergenic 50.0%
GTGAAGCCTCTGTTATCGTC+AGG + tig0017062:2311-2330 Msa1360440:CDS 50.0%
! GTGCGTCTGGTTTAATGAGG+TGG + tig0017062:2363-2382 Msa1360440:CDS 50.0%
GCTTCCCATATGTTCTGTGG+CGG + tig0017062:2413-2432 Msa1360440:CDS 50.0%
ATGAGAGGAGAGGAAGAGAG+AGG - tig0017062:2650-2669 None:intergenic 50.0%
GGGTTCTACAGTGCGAATGG+TGG + tig0017062:1089-1108 Msa1360440:CDS 55.0%
GGTCGCAGAGTTGGGGATAA+TGG + tig0017062:1378-1397 Msa1360440:CDS 55.0%
GCGCTTCCAACACACCTAGT+GGG - tig0017062:1828-1847 None:intergenic 55.0%
AGCGCTTCCAACACACCTAG+TGG - tig0017062:1829-1848 None:intergenic 55.0%
!! GTGTGTTGGAAGCGCTCCTT+TGG + tig0017062:1833-1852 Msa1360440:CDS 55.0%
ATGAGGCTAAGGCCGTTGTC+AGG + tig0017062:1911-1930 Msa1360440:CDS 55.0%
AGGTGGTTCGCTTCACGTCT+AGG + tig0017062:2380-2399 Msa1360440:CDS 55.0%
GGTGGTTCGCTTCACGTCTA+GGG + tig0017062:2381-2400 Msa1360440:CDS 55.0%
GATCCTTGCGAGTGCAGACA+GGG - tig0017062:2468-2487 None:intergenic 55.0%
AGATCCTTGCGAGTGCAGAC+AGG - tig0017062:2469-2488 None:intergenic 55.0%
TGTCTGCACTCGCAAGGATC+TGG + tig0017062:2468-2487 Msa1360440:CDS 55.0%
GAGGGACCCACTAGGTGTGT+TGG + tig0017062:1819-1838 Msa1360440:CDS 60.0%
GTTCCCTGTCTGCACTCGCA+AGG + tig0017062:2462-2481 Msa1360440:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0017062 gene 2 2827 2 ID=Msa1360440;Name=Msa1360440
tig0017062 mRNA 2 2827 2 ID=Msa1360440-mRNA-1;Parent=Msa1360440;Name=Msa1360440-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|1|0.83|1|1|1|6|290|396
tig0017062 exon 2 131 2 ID=Msa1360440-mRNA-1:exon:11933;Parent=Msa1360440-mRNA-1
tig0017062 exon 700 917 700 ID=Msa1360440-mRNA-1:exon:11934;Parent=Msa1360440-mRNA-1
tig0017062 exon 1062 1238 1062 ID=Msa1360440-mRNA-1:exon:11935;Parent=Msa1360440-mRNA-1
tig0017062 exon 1324 1479 1324 ID=Msa1360440-mRNA-1:exon:11936;Parent=Msa1360440-mRNA-1
tig0017062 exon 1751 2027 1751 ID=Msa1360440-mRNA-1:exon:11937;Parent=Msa1360440-mRNA-1
tig0017062 exon 2305 2827 2305 ID=Msa1360440-mRNA-1:exon:11938;Parent=Msa1360440-mRNA-1
tig0017062 CDS 2 131 2 ID=Msa1360440-mRNA-1:cds;Parent=Msa1360440-mRNA-1
tig0017062 CDS 700 917 700 ID=Msa1360440-mRNA-1:cds;Parent=Msa1360440-mRNA-1
tig0017062 CDS 1062 1238 1062 ID=Msa1360440-mRNA-1:cds;Parent=Msa1360440-mRNA-1
tig0017062 CDS 1324 1479 1324 ID=Msa1360440-mRNA-1:cds;Parent=Msa1360440-mRNA-1
tig0017062 CDS 1751 2027 1751 ID=Msa1360440-mRNA-1:cds;Parent=Msa1360440-mRNA-1
tig0017062 CDS 2305 2537 2305 ID=Msa1360440-mRNA-1:cds;Parent=Msa1360440-mRNA-1
tig0017062 three_prime_UTR 2538 2827 2538 ID=Msa1360440-mRNA-1:three_prime_utr;Parent=Msa1360440-mRNA-1
Gene Sequence

>Msa1360440

TCTTCTTCCAACATTGCTTCAACAACGACAAATCAAGATAATCATGATCATCGATCTAAAGAGACCATTGTTAAAACTAACTTGAATCGTCTTGATCCTACTACTCATGTTGTTGCTGGTGTTAGAGAACGTTGCTTGAAGCTTCTACCACCTGAAAAACTTGAGCAACTAGAGATTCCCGTGGAAGAAGAATCTAGTTTACCTATTGGTAAAGTCTTGTATATGTCAGCGACTGATGCGTCTTTAATAGGAGGGAATGCTACATTGTCTCAATTGCGTGCAGAGGATACAAGTTTTAATTTATTTACTGGAAACCAAACATTTGAGGAAAGAGATAGAAGTTTTGAGGTGAAAGAAACTACGACGGCACATTGTGGGTTCTACAGTGCGAATGGTGGGTTTAGGATATCAGATGAAGATAAAAGTTTCATGCAAGGTTGCAAAGTGGTTGTATCTACTTGTGCATTTGGTGGCGGAGATGATCTCTATCAACCGATTGGAATGTCAGAGGCTTCACTTAAGAAGGTTTGCTATGTAGCATTCTGGGATGAAATCACACTAAAAGCGCAGGAATTAGTGGGTCGCAGAGTTGGGGATAATGGATTTGTTGGAAAGTGGCGTGTTATTGTCGTTCAGGATCTTCCTTTTTCTGATCAAAGGTTGAATGGTAAAATTCCCAAGATGTTAAGCCATCGCCTTTTCCCTCAAGCAAAATACTCTATTTGGGTAGACTCCAAGTCCCAATTTAGGAGGGACCCACTAGGTGTGTTGGAAGCGCTCCTTTGGCGCACAAGTTCTGTACTTGCCATATCAGAACATGGAGCTCGTAGTAGTGTCTATGATGAGGCTAAGGCCGTTGTCAGGAAAAACAAAGCGAAGCCAGAGGAAGTTGAAGTGCAACTGAATCAATACAGAAAAGATGGCATGCCTGTAGACAAGAGATTTAATGGAAAGAAAGCTCTATGTGAAGCCTCTGTTATCGTCAGGAAGCATACGCCACTAACTAATCTATTGATGTGCGTCTGGTTTAATGAGGTGGTTCGCTTCACGTCTAGGGATCAGCTCAGCTTCCCATATGTTCTGTGGCGGTTGAAAGCATTCAAAAACATTAACATGTTCCCTGTCTGCACTCGCAAGGATCTGGTCAATAGCATGGGACACATCCGCAAAGCAAAACCATTGCAAAGCTGA

Protein sequence

>Msa1360440

SSSNIASTTTNQDNHDHRSKETIVKTNLNRLDPTTHVVAGVRERCLKLLPPEKLEQLEIPVEEESSLPIGKVLYMSATDASLIGGNATLSQLRAEDTSFNLFTGNQTFEERDRSFEVKETTTAHCGFYSANGGFRISDEDKSFMQGCKVVVSTCAFGGGDDLYQPIGMSEASLKKVCYVAFWDEITLKAQELVGRRVGDNGFVGKWRVIVVQDLPFSDQRLNGKIPKMLSHRLFPQAKYSIWVDSKSQFRRDPLGVLEALLWRTSSVLAISEHGARSSVYDEAKAVVRKNKAKPEEVEVQLNQYRKDGMPVDKRFNGKKALCEASVIVRKHTPLTNLLMCVWFNEVVRFTSRDQLSFPYVLWRLKAFKNINMFPVCTRKDLVNSMGHIRKAKPLQS*