Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009430 | sp|Q9SHL7|RP44A_ARATH | 75.758 | 66 | 16 | 0 | 7 | 72 | 868 | 933 | 6.46e-31 | 116 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009430 | A0A2K3LN28 | 92.424 | 66 | 5 | 0 | 7 | 72 | 175 | 240 | 2.81e-36 | 131 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004860 | Msa0009430 | 0.804648 | 1.953038e-49 | -8.615850e-47 |
| Msa0004920 | Msa0009430 | 0.810045 | 1.401333e-50 | -8.615850e-47 |
| Msa0009430 | Msa0033110 | 0.804463 | 2.133978e-49 | -8.615850e-47 |
| Msa0009430 | Msa0033260 | 0.807413 | 5.117623e-50 | -8.615850e-47 |
| Msa0009430 | Msa0037250 | 0.815005 | 1.153606e-51 | -8.615850e-47 |
| Msa0009430 | Msa0043980 | 0.802483 | 5.491658e-49 | -8.615850e-47 |
| Msa0009430 | Msa0051770 | 0.801305 | 9.587679e-49 | -8.615850e-47 |
| Msa0009430 | Msa0056470 | 0.813267 | 2.790957e-51 | -8.615850e-47 |
| Msa0009430 | Msa0072420 | 0.807942 | 3.949419e-50 | -8.615850e-47 |
| Msa0009430 | Msa0074700 | 0.806381 | 8.457542e-50 | -8.615850e-47 |
| Msa0009430 | Msa0083280 | 0.826890 | 2.115772e-54 | -8.615850e-47 |
| Msa0009430 | Msa0090360 | 0.838286 | 3.147088e-57 | -8.615850e-47 |
| Msa0009430 | Msa0091410 | 0.806863 | 6.691468e-50 | -8.615850e-47 |
| Msa0009430 | Msa0114060 | 0.800400 | 1.466884e-48 | -8.615850e-47 |
| Msa0009430 | Msa0115990 | 0.819487 | 1.131883e-52 | -8.615850e-47 |
| Msa0009430 | Msa0137840 | 0.836036 | 1.184143e-56 | -8.615850e-47 |
| Msa0009430 | Msa0140650 | 0.819129 | 1.365405e-52 | -8.615850e-47 |
| Msa0009430 | Msa0140820 | 0.823184 | 1.587921e-53 | -8.615850e-47 |
| Msa0009430 | Msa0150300 | 0.864235 | 1.407021e-64 | -8.615850e-47 |
| Msa0009430 | Msa0159930 | 0.821490 | 3.926553e-53 | -8.615850e-47 |
| Msa0009430 | Msa0168720 | 0.806264 | 8.951464e-50 | -8.615850e-47 |
| Msa0009430 | Msa0184040 | 0.838670 | 2.505890e-57 | -8.615850e-47 |
| Msa0009430 | Msa0184780 | 0.811078 | 8.381294e-51 | -8.615850e-47 |
| Msa0009430 | Msa0189320 | 0.862111 | 6.387560e-64 | -8.615850e-47 |
| Msa0009430 | Msa0191050 | 0.835297 | 1.821966e-56 | -8.615850e-47 |
| Msa0009430 | Msa0194950 | -0.826657 | 2.405450e-54 | -8.615850e-47 |
| Msa0009430 | Msa0205130 | 0.808559 | 2.918195e-50 | -8.615850e-47 |
| Msa0009430 | Msa0209350 | 0.815160 | 1.065644e-51 | -8.615850e-47 |
| Msa0009430 | Msa0211150 | 0.810984 | 8.783552e-51 | -8.615850e-47 |
| Msa0009430 | Msa0216240 | 0.819722 | 1.000402e-52 | -8.615850e-47 |
| Msa0009430 | Msa0220580 | 0.803768 | 2.977116e-49 | -8.615850e-47 |
| Msa0009430 | Msa0233350 | 0.826813 | 2.207258e-54 | -8.615850e-47 |
| Msa0009430 | Msa0241390 | 0.833501 | 5.142799e-56 | -8.615850e-47 |
| Msa0009430 | Msa0260680 | 0.850177 | 2.010310e-60 | -8.615850e-47 |
| Msa0009430 | Msa0271510 | 0.806974 | 6.339388e-50 | -8.615850e-47 |
| Msa0009430 | Msa0273900 | 0.804895 | 1.734370e-49 | -8.615850e-47 |
| Msa0009430 | Msa0280090 | 0.844425 | 7.618808e-59 | -8.615850e-47 |
| Msa0009430 | Msa0309770 | 0.844890 | 5.712998e-59 | -8.615850e-47 |
| Msa0009430 | Msa0312650 | 0.802794 | 4.736486e-49 | -8.615850e-47 |
| Msa0009430 | Msa0315440 | -0.828760 | 7.516422e-55 | -8.615850e-47 |
| Msa0009430 | Msa0318980 | 0.814927 | 1.200469e-51 | -8.615850e-47 |
| Msa0009430 | Msa0334550 | 0.826247 | 3.012273e-54 | -8.615850e-47 |
| Msa0009430 | Msa0345970 | 0.807478 | 4.956263e-50 | -8.615850e-47 |
| Msa0009430 | Msa0366890 | 0.817827 | 2.694551e-52 | -8.615850e-47 |
| Msa0009430 | Msa0376300 | 0.822765 | 1.987801e-53 | -8.615850e-47 |
| Msa0009430 | Msa0376310 | 0.831696 | 1.441675e-55 | -8.615850e-47 |
| Msa0009430 | Msa0380300 | 0.807290 | 5.432615e-50 | -8.615850e-47 |
| Msa0009430 | Msa0383800 | 0.806990 | 6.288896e-50 | -8.615850e-47 |
| Msa0009430 | Msa0385580 | 0.810409 | 1.169650e-50 | -8.615850e-47 |
| Msa0009430 | Msa0388700 | 0.806256 | 8.986408e-50 | -8.615850e-47 |
| Msa0009430 | Msa0398670 | 0.820587 | 6.339644e-53 | -8.615850e-47 |
| Msa0009430 | Msa0469990 | 0.818987 | 1.470810e-52 | -8.615850e-47 |
| Msa0009430 | Msa0477080 | 0.836760 | 7.748100e-57 | -8.615850e-47 |
| Msa0009430 | Msa0479970 | 0.833499 | 5.149444e-56 | -8.615850e-47 |
| Msa0009430 | Msa0481530 | 0.820390 | 7.034395e-53 | -8.615850e-47 |
| Msa0009430 | Msa0484720 | 0.803223 | 3.861590e-49 | -8.615850e-47 |
| Msa0009430 | Msa0493480 | 0.818282 | 2.125882e-52 | -8.615850e-47 |
| Msa0009430 | Msa0497490 | 0.804218 | 2.400058e-49 | -8.615850e-47 |
| Msa0009430 | Msa0518390 | 0.809986 | 1.442669e-50 | -8.615850e-47 |
| Msa0009430 | Msa0521430 | 0.816414 | 5.598289e-52 | -8.615850e-47 |
| Msa0009430 | Msa0524920 | 0.812265 | 4.624027e-51 | -8.615850e-47 |
| Msa0009430 | Msa0548240 | 0.849863 | 2.459870e-60 | -8.615850e-47 |
| Msa0009430 | Msa0553050 | 0.844758 | 6.201211e-59 | -8.615850e-47 |
| Msa0009430 | Msa0563840 | 0.803806 | 2.924573e-49 | -8.615850e-47 |
| Msa0009430 | Msa0577500 | 0.819169 | 1.337128e-52 | -8.615850e-47 |
| Msa0009430 | Msa0585560 | 0.800971 | 1.122232e-48 | -8.615850e-47 |
| Msa0009430 | Msa0607050 | 0.854395 | 1.266699e-61 | -8.615850e-47 |
| Msa0009430 | Msa0610430 | 0.811492 | 6.812763e-51 | -8.615850e-47 |
| Msa0009430 | Msa0612960 | 0.807363 | 5.242039e-50 | -8.615850e-47 |
| Msa0009430 | Msa0617640 | 0.808629 | 2.819271e-50 | -8.615850e-47 |
| Msa0009430 | Msa0623790 | 0.841304 | 5.155126e-58 | -8.615850e-47 |
| Msa0009430 | Msa0643560 | 0.827914 | 1.202475e-54 | -8.615850e-47 |
| Msa0009430 | Msa0647500 | 0.852157 | 5.548950e-61 | -8.615850e-47 |
| Msa0009430 | Msa0649490 | 0.838685 | 2.483250e-57 | -8.615850e-47 |
| Msa0009430 | Msa0661300 | 0.801317 | 9.532548e-49 | -8.615850e-47 |
| Msa0009430 | Msa0662500 | 0.803545 | 3.312338e-49 | -8.615850e-47 |
| Msa0009430 | Msa0663390 | 0.817247 | 3.641239e-52 | -8.615850e-47 |
| Msa0009430 | Msa0665860 | 0.800331 | 1.515294e-48 | -8.615850e-47 |
| Msa0009430 | Msa0666270 | 0.811503 | 6.775467e-51 | -8.615850e-47 |
| Msa0009430 | Msa0673460 | 0.805709 | 1.171321e-49 | -8.615850e-47 |
| Msa0009430 | Msa0688960 | 0.801963 | 7.026942e-49 | -8.615850e-47 |
| Msa0009430 | Msa0690150 | 0.861229 | 1.187721e-63 | -8.615850e-47 |
| Msa0009430 | Msa0692830 | 0.807456 | 5.010798e-50 | -8.615850e-47 |
| Msa0009430 | Msa0692950 | 0.809008 | 2.339374e-50 | -8.615850e-47 |
| Msa0009430 | Msa0695100 | 0.801587 | 8.393486e-49 | -8.615850e-47 |
| Msa0009430 | Msa0697940 | 0.824849 | 6.457309e-54 | -8.615850e-47 |
| Msa0009430 | Msa0709400 | 0.853553 | 2.214386e-61 | -8.615850e-47 |
| Msa0009430 | Msa0709500 | 0.803998 | 2.667434e-49 | -8.615850e-47 |
| Msa0009430 | Msa0711780 | 0.828926 | 6.850376e-55 | -8.615850e-47 |
| Msa0009430 | Msa0740510 | 0.816104 | 6.567951e-52 | -8.615850e-47 |
| Msa0009430 | Msa0741440 | 0.812677 | 3.759701e-51 | -8.615850e-47 |
| Msa0009430 | Msa0746420 | 0.800202 | 1.609570e-48 | -8.615850e-47 |
| Msa0009430 | Msa0788850 | 0.826629 | 2.442690e-54 | -8.615850e-47 |
| Msa0009430 | Msa0794670 | 0.842064 | 3.248812e-58 | -8.615850e-47 |
| Msa0009430 | Msa0796700 | 0.819911 | 9.055284e-53 | -8.615850e-47 |
| Msa0009430 | Msa0808270 | 0.817005 | 4.127134e-52 | -8.615850e-47 |
| Msa0009430 | Msa0820650 | 0.813018 | 3.164309e-51 | -8.615850e-47 |
| Msa0009430 | Msa0820770 | 0.817133 | 3.861603e-52 | -8.615850e-47 |
| Msa0009430 | Msa0830540 | 0.804876 | 1.750233e-49 | -8.615850e-47 |
| Msa0009430 | Msa0861090 | 0.811891 | 5.580761e-51 | -8.615850e-47 |
| Msa0009430 | Msa0880020 | 0.827049 | 1.938502e-54 | -8.615850e-47 |
| Msa0009430 | Msa0945970 | 0.830465 | 2.892527e-55 | -8.615850e-47 |
| Msa0009430 | Msa0963270 | 0.817423 | 3.322601e-52 | -8.615850e-47 |
| Msa0009430 | Msa0968590 | 0.839308 | 1.712740e-57 | -8.615850e-47 |
| Msa0009430 | Msa1013400 | 0.803199 | 3.905938e-49 | -8.615850e-47 |
| Msa0009430 | Msa1014420 | 0.801854 | 7.398165e-49 | -8.615850e-47 |
| Msa0009430 | Msa1017630 | 0.834829 | 2.390407e-56 | -8.615850e-47 |
| Msa0009430 | Msa1033400 | 0.808093 | 3.669234e-50 | -8.615850e-47 |
| Msa0009430 | Msa1034150 | 0.817857 | 2.652474e-52 | -8.615850e-47 |
| Msa0009430 | Msa1046020 | 0.803292 | 3.738215e-49 | -8.615850e-47 |
| Msa0009430 | Msa1048280 | -0.819297 | 1.250891e-52 | -8.615850e-47 |
| Msa0009430 | Msa1051880 | 0.805700 | 1.176397e-49 | -8.615850e-47 |
| Msa0009430 | Msa1055680 | 0.809677 | 1.681322e-50 | -8.615850e-47 |
| Msa0009430 | Msa1081980 | 0.818876 | 1.558791e-52 | -8.615850e-47 |
| Msa0009430 | Msa1121440 | 0.821519 | 3.868306e-53 | -8.615850e-47 |
| Msa0009430 | Msa1124960 | 0.845996 | 2.865765e-59 | -8.615850e-47 |
| Msa0009430 | Msa1128060 | 0.802869 | 4.571506e-49 | -8.615850e-47 |
| Msa0009430 | Msa1130980 | 0.815412 | 9.370400e-52 | -8.615850e-47 |
| Msa0009430 | Msa1147280 | 0.820685 | 6.018218e-53 | -8.615850e-47 |
| Msa0009430 | Msa1147970 | 0.812581 | 3.945548e-51 | -8.615850e-47 |
| Msa0009430 | Msa1151720 | 0.803829 | 2.892155e-49 | -8.615850e-47 |
| Msa0009430 | Msa1159840 | 0.806773 | 6.989558e-50 | -8.615850e-47 |
| Msa0009430 | Msa1160590 | 0.817643 | 2.965460e-52 | -8.615850e-47 |
| Msa0009430 | Msa1165920 | 0.847333 | 1.235751e-59 | -8.615850e-47 |
| Msa0009430 | Msa1165940 | 0.845740 | 3.363598e-59 | -8.615850e-47 |
| Msa0009430 | Msa1167340 | 0.812514 | 4.080756e-51 | -8.615850e-47 |
| Msa0009430 | Msa1170410 | 0.833001 | 6.853024e-56 | -8.615850e-47 |
| Msa0009430 | Msa1171360 | 0.803731 | 3.031453e-49 | -8.615850e-47 |
| Msa0009430 | Msa1189070 | 0.804502 | 2.094439e-49 | -8.615850e-47 |
| Msa0009430 | Msa1204530 | 0.808204 | 3.474886e-50 | -8.615850e-47 |
| Msa0009430 | Msa1208880 | 0.800320 | 1.523474e-48 | -8.615850e-47 |
| Msa0009430 | Msa1211890 | 0.806856 | 6.712043e-50 | -8.615850e-47 |
| Msa0009430 | Msa1244600 | 0.848611 | 5.490066e-60 | -8.615850e-47 |
| Msa0009430 | Msa1253020 | 0.803637 | 3.170222e-49 | -8.615850e-47 |
| Msa0009430 | Msa1267430 | 0.833697 | 4.595277e-56 | -8.615850e-47 |
| Msa0009430 | Msa1279400 | 0.807236 | 5.579670e-50 | -8.615850e-47 |
| Msa0009430 | Msa1284550 | 0.803682 | 3.102105e-49 | -8.615850e-47 |
| Msa0009430 | Msa1294120 | 0.970328 | 1.890783e-131 | -8.615850e-47 |
| Msa0009430 | Msa1294820 | 0.812739 | 3.642524e-51 | -8.615850e-47 |
| Msa0009430 | Msa1305340 | 0.805102 | 1.569841e-49 | -8.615850e-47 |
| Msa0009430 | Msa1305660 | 0.853316 | 2.590132e-61 | -8.615850e-47 |
| Msa0009430 | Msa1306840 | 0.820116 | 8.129354e-53 | -8.615850e-47 |
| Msa0009430 | Msa1331000 | 0.806372 | 8.493868e-50 | -8.615850e-47 |
| Msa0009430 | Msa1331320 | 0.806000 | 1.017329e-49 | -8.615850e-47 |
| Msa0009430 | Msa1351890 | 0.818369 | 2.031558e-52 | -8.615850e-47 |
| Msa0009430 | Msa1353980 | 0.849194 | 3.782046e-60 | -8.615850e-47 |
| Msa0009430 | Msa1360440 | 0.801196 | 1.009057e-48 | -8.615850e-47 |
| Msa0009430 | Msa1361100 | 0.821670 | 3.569515e-53 | -8.615850e-47 |
| Msa0009430 | Msa1370070 | -0.802202 | 6.275291e-49 | -8.615850e-47 |
| Msa0009430 | Msa1374120 | 0.811561 | 6.581571e-51 | -8.615850e-47 |
| Msa0009430 | Msa1375560 | 0.814211 | 1.729500e-51 | -8.615850e-47 |
| Msa0009430 | Msa1377500 | 0.804316 | 2.290296e-49 | -8.615850e-47 |
| Msa0009430 | Msa1382620 | 0.800441 | 1.439374e-48 | -8.615850e-47 |
| Msa0009430 | Msa1385770 | 0.803994 | 2.672282e-49 | -8.615850e-47 |
| Msa0009430 | Msa1386780 | 0.830344 | 3.096052e-55 | -8.615850e-47 |
| Msa0009430 | Msa1389510 | 0.811994 | 5.298678e-51 | -8.615850e-47 |
| Msa0009430 | Msa1391410 | 0.855429 | 6.347313e-62 | -8.615850e-47 |
| Msa0009430 | Msa1407460 | 0.820656 | 6.113394e-53 | -8.615850e-47 |
| Msa0009430 | Msa1409240 | 0.803618 | 3.198530e-49 | -8.615850e-47 |
| Msa0009430 | Msa1418340 | 0.812350 | 4.431684e-51 | -8.615850e-47 |
| Msa0009430 | Msa1419870 | 0.807662 | 4.530139e-50 | -8.615850e-47 |
| Msa0009430 | Msa1424450 | 0.800837 | 1.195110e-48 | -8.615850e-47 |
| Msa0009430 | Msa1426030 | 0.811752 | 5.982825e-51 | -8.615850e-47 |
| Msa0009430 | Msa1432420 | 0.863872 | 1.825445e-64 | -8.615850e-47 |
| Msa0009430 | Msa1433390 | 0.839633 | 1.409758e-57 | -8.615850e-47 |
| Msa0009430 | Msa1451160 | 0.810551 | 1.089919e-50 | -8.615850e-47 |
| Msa0009430 | Msa1451560 | 0.828181 | 1.036776e-54 | -8.615850e-47 |
| Msa0009430 | Msa1452240 | 0.823314 | 1.480308e-53 | -8.615850e-47 |
| Msa0009430 | Msa1454480 | 0.816829 | 4.520130e-52 | -8.615850e-47 |
| Msa0009430 | Msa1457920 | 0.812247 | 4.667596e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009430 | MtrunA17_Chr8g0370231 | 96.970 | 66 | 2 | 0 | 7 | 72 | 869 | 934 | 1.73e-39 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009430 | AT2G17510.2 | 75.758 | 66 | 16 | 0 | 7 | 72 | 947 | 1012 | 5.74e-32 | 116 |
| Msa0009430 | AT2G17510.1 | 75.758 | 66 | 16 | 0 | 7 | 72 | 868 | 933 | 6.57e-32 | 116 |
Find 32 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAACCCTATATATCAAAA+TGG | 0.336251 | 1_1:-13805019 | None:intergenic |
| GATACACGTTGGCTTAAATA+TGG | 0.339259 | 1_1:+13805062 | Msa0009430:three_prime_UTR |
| ACCTCCGCACTTGAAGTTTC+TGG | 0.344839 | 1_1:+13804810 | Msa0009430:three_prime_UTR |
| TGTCACAGATTCGGCATAGA+AGG | 0.357548 | 1_1:+13804524 | Msa0009430:intron |
| GCTCTTGTTGTCAAATATAC+AGG | 0.379477 | 1_1:-13804548 | None:intergenic |
| TTTGACAACAAGAGCTGAAA+AGG | 0.403110 | 1_1:+13804556 | Msa0009430:CDS |
| AGCTGAAGCTTTGGCCGGTT+AGG | 0.424906 | 1_1:-13804695 | None:intergenic |
| CTCTCATCTAGAGGTATACT+AGG | 0.448622 | 1_1:+13804720 | Msa0009430:exon |
| ACAAATTCACTTGGAGGTTG+TGG | 0.454352 | 1_1:+13804664 | Msa0009430:CDS |
| TTGTGGAGCCTCAACCTAAC+CGG | 0.471178 | 1_1:+13804681 | Msa0009430:CDS |
| AGCTTTGGCCGGTTAGGTTG+AGG | 0.480175 | 1_1:-13804689 | None:intergenic |
| ATGAGAGTAAGCTGAAGCTT+TGG | 0.481186 | 1_1:-13804704 | None:intergenic |
| GAGCAATATAAATAAATAAG+AGG | 0.483680 | 1_1:-13804782 | None:intergenic |
| CTGAAAAGGGTAGCGGAGAA+TGG | 0.489319 | 1_1:+13804570 | Msa0009430:CDS |
| GCTTGAGTAGTAGTGTTGCT+TGG | 0.510618 | 1_1:+13804913 | Msa0009430:three_prime_UTR |
| CATTGAACAAGAAGCAAGCT+AGG | 0.535530 | 1_1:+13804752 | Msa0009430:three_prime_UTR |
| GACGGTACAAATTCACTTGG+AGG | 0.540234 | 1_1:+13804658 | Msa0009430:CDS |
| GGTATTAGAATTGACTGGCA+TGG | 0.541030 | 1_1:+13804831 | Msa0009430:three_prime_UTR |
| TAGTTTCGTAAGTGTGAATG+AGG | 0.546738 | 1_1:+13804990 | Msa0009430:three_prime_UTR |
| AAACTTCAAGTGCGGAGGTG+TGG | 0.547763 | 1_1:-13804806 | None:intergenic |
| CAACACTACTACTCAAGCTA+TGG | 0.553424 | 1_1:-13804908 | None:intergenic |
| TTTCTGGTATTAGAATTGAC+TGG | 0.567157 | 1_1:+13804826 | Msa0009430:three_prime_UTR |
| TTGACAACAAGAGCTGAAAA+GGG | 0.568719 | 1_1:+13804557 | Msa0009430:CDS |
| GCAGACGGTACAAATTCACT+TGG | 0.575230 | 1_1:+13804655 | Msa0009430:CDS |
| AATCTCTCTCAAGTGCAAGA+TGG | 0.577628 | 1_1:-13805088 | None:intergenic |
| GAGTAAGCTGAAGCTTTGGC+CGG | 0.579724 | 1_1:-13804700 | None:intergenic |
| TTTATCAAAATGATACACGT+TGG | 0.591318 | 1_1:+13805051 | Msa0009430:three_prime_UTR |
| AGATGGTTACTCATTTCAGA+AGG | 0.619023 | 1_1:+13804421 | None:intergenic |
| ACAAGAGCTGAAAAGGGTAG+CGG | 0.620766 | 1_1:+13804563 | Msa0009430:CDS |
| TTCAGCTTACTCTCATCTAG+AGG | 0.635613 | 1_1:+13804711 | Msa0009430:CDS |
| ACCAGAAACTTCAAGTGCGG+AGG | 0.640511 | 1_1:-13804811 | None:intergenic |
| AATACCAGAAACTTCAAGTG+CGG | 0.692524 | 1_1:-13804814 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAGCAATATAAATAAATAAG+AGG | - | chr1_1:13804785-13804804 | None:intergenic | 20.0% |
| !!! | AATTGTCCATTTTGATATAT+AGG | + | chr1_1:13805013-13805032 | Msa0009430:three_prime_UTR | 20.0% |
| !!! | ATTGTCCATTTTGATATATA+GGG | + | chr1_1:13805014-13805033 | Msa0009430:three_prime_UTR | 20.0% |
| !! | GAGCAATATAAATAAATAAG+AGG | - | chr1_1:13804785-13804804 | None:intergenic | 20.0% |
| !!! | AATTGTCCATTTTGATATAT+AGG | + | chr1_1:13805013-13805032 | Msa0009430:three_prime_UTR | 20.0% |
| !!! | ATTGTCCATTTTGATATATA+GGG | + | chr1_1:13805014-13805033 | Msa0009430:three_prime_UTR | 20.0% |
| ! | ACTAACCCTATATATCAAAA+TGG | - | chr1_1:13805022-13805041 | None:intergenic | 25.0% |
| ! | TTTATCAAAATGATACACGT+TGG | + | chr1_1:13805051-13805070 | Msa0009430:three_prime_UTR | 25.0% |
| !!! | GTATAACTGTTTTGATTAGT+TGG | + | chr1_1:13805112-13805131 | Msa0009430:three_prime_UTR | 25.0% |
| ! | ACTAACCCTATATATCAAAA+TGG | - | chr1_1:13805022-13805041 | None:intergenic | 25.0% |
| ! | TTTATCAAAATGATACACGT+TGG | + | chr1_1:13805051-13805070 | Msa0009430:three_prime_UTR | 25.0% |
| !!! | GTATAACTGTTTTGATTAGT+TGG | + | chr1_1:13805112-13805131 | Msa0009430:three_prime_UTR | 25.0% |
| !!! | CTTTTTTCTTGTCACAGATT+CGG | + | chr1_1:13804515-13804534 | Msa0009430:intron | 30.0% |
| AGAGCAGAAGATTAAAAAGA+CGG | + | chr1_1:13804607-13804626 | Msa0009430:CDS | 30.0% | |
| ! | TTTCTGGTATTAGAATTGAC+TGG | + | chr1_1:13804826-13804845 | Msa0009430:three_prime_UTR | 30.0% |
| ! | ATTTTGTTGGAAGAATTGAC+TGG | + | chr1_1:13804856-13804875 | Msa0009430:three_prime_UTR | 30.0% |
| !!! | CTTTTTTCTTGTCACAGATT+CGG | + | chr1_1:13804515-13804534 | Msa0009430:intron | 30.0% |
| AGAGCAGAAGATTAAAAAGA+CGG | + | chr1_1:13804607-13804626 | Msa0009430:CDS | 30.0% | |
| ! | TTTCTGGTATTAGAATTGAC+TGG | + | chr1_1:13804826-13804845 | Msa0009430:three_prime_UTR | 30.0% |
| ! | ATTTTGTTGGAAGAATTGAC+TGG | + | chr1_1:13804856-13804875 | Msa0009430:three_prime_UTR | 30.0% |
| ! | GCTCTTGTTGTCAAATATAC+AGG | - | chr1_1:13804551-13804570 | None:intergenic | 35.0% |
| TTTGACAACAAGAGCTGAAA+AGG | + | chr1_1:13804556-13804575 | Msa0009430:CDS | 35.0% | |
| TTGACAACAAGAGCTGAAAA+GGG | + | chr1_1:13804557-13804576 | Msa0009430:CDS | 35.0% | |
| CAGAAGATTAAAAAGACGGA+TGG | + | chr1_1:13804611-13804630 | Msa0009430:CDS | 35.0% | |
| ! | TTCATACAGCATTTTGCAGA+CGG | + | chr1_1:13804640-13804659 | Msa0009430:CDS | 35.0% |
| AATACCAGAAACTTCAAGTG+CGG | - | chr1_1:13804817-13804836 | None:intergenic | 35.0% | |
| ! | GACTGGCATAGATATTTTGT+TGG | + | chr1_1:13804873-13804892 | Msa0009430:three_prime_UTR | 35.0% |
| TAGTTTCGTAAGTGTGAATG+AGG | + | chr1_1:13804990-13805009 | Msa0009430:three_prime_UTR | 35.0% | |
| !! | GATACACGTTGGCTTAAATA+TGG | + | chr1_1:13805062-13805081 | Msa0009430:three_prime_UTR | 35.0% |
| ! | GCTCTTGTTGTCAAATATAC+AGG | - | chr1_1:13804551-13804570 | None:intergenic | 35.0% |
| TTTGACAACAAGAGCTGAAA+AGG | + | chr1_1:13804556-13804575 | Msa0009430:CDS | 35.0% | |
| TTGACAACAAGAGCTGAAAA+GGG | + | chr1_1:13804557-13804576 | Msa0009430:CDS | 35.0% | |
| CAGAAGATTAAAAAGACGGA+TGG | + | chr1_1:13804611-13804630 | Msa0009430:CDS | 35.0% | |
| ! | TTCATACAGCATTTTGCAGA+CGG | + | chr1_1:13804640-13804659 | Msa0009430:CDS | 35.0% |
| AATACCAGAAACTTCAAGTG+CGG | - | chr1_1:13804817-13804836 | None:intergenic | 35.0% | |
| ! | GACTGGCATAGATATTTTGT+TGG | + | chr1_1:13804873-13804892 | Msa0009430:three_prime_UTR | 35.0% |
| TAGTTTCGTAAGTGTGAATG+AGG | + | chr1_1:13804990-13805009 | Msa0009430:three_prime_UTR | 35.0% | |
| !! | GATACACGTTGGCTTAAATA+TGG | + | chr1_1:13805062-13805081 | Msa0009430:three_prime_UTR | 35.0% |
| ACAAATTCACTTGGAGGTTG+TGG | + | chr1_1:13804664-13804683 | Msa0009430:CDS | 40.0% | |
| ATGAGAGTAAGCTGAAGCTT+TGG | - | chr1_1:13804707-13804726 | None:intergenic | 40.0% | |
| TTCAGCTTACTCTCATCTAG+AGG | + | chr1_1:13804711-13804730 | Msa0009430:CDS | 40.0% | |
| ! | CTCTCATCTAGAGGTATACT+AGG | + | chr1_1:13804720-13804739 | Msa0009430:exon | 40.0% |
| CATTGAACAAGAAGCAAGCT+AGG | + | chr1_1:13804752-13804771 | Msa0009430:three_prime_UTR | 40.0% | |
| GGTATTAGAATTGACTGGCA+TGG | + | chr1_1:13804831-13804850 | Msa0009430:three_prime_UTR | 40.0% | |
| ! | GACTGGCATGGATATTTTGT+TGG | + | chr1_1:13804843-13804862 | Msa0009430:three_prime_UTR | 40.0% |
| CAACACTACTACTCAAGCTA+TGG | - | chr1_1:13804911-13804930 | None:intergenic | 40.0% | |
| AATCTCTCTCAAGTGCAAGA+TGG | - | chr1_1:13805091-13805110 | None:intergenic | 40.0% | |
| ACAAATTCACTTGGAGGTTG+TGG | + | chr1_1:13804664-13804683 | Msa0009430:CDS | 40.0% | |
| ATGAGAGTAAGCTGAAGCTT+TGG | - | chr1_1:13804707-13804726 | None:intergenic | 40.0% | |
| TTCAGCTTACTCTCATCTAG+AGG | + | chr1_1:13804711-13804730 | Msa0009430:CDS | 40.0% | |
| ! | CTCTCATCTAGAGGTATACT+AGG | + | chr1_1:13804720-13804739 | Msa0009430:exon | 40.0% |
| CATTGAACAAGAAGCAAGCT+AGG | + | chr1_1:13804752-13804771 | Msa0009430:three_prime_UTR | 40.0% | |
| GGTATTAGAATTGACTGGCA+TGG | + | chr1_1:13804831-13804850 | Msa0009430:three_prime_UTR | 40.0% | |
| ! | GACTGGCATGGATATTTTGT+TGG | + | chr1_1:13804843-13804862 | Msa0009430:three_prime_UTR | 40.0% |
| CAACACTACTACTCAAGCTA+TGG | - | chr1_1:13804911-13804930 | None:intergenic | 40.0% | |
| AATCTCTCTCAAGTGCAAGA+TGG | - | chr1_1:13805091-13805110 | None:intergenic | 40.0% | |
| TGTCACAGATTCGGCATAGA+AGG | + | chr1_1:13804524-13804543 | Msa0009430:intron | 45.0% | |
| ACAAGAGCTGAAAAGGGTAG+CGG | + | chr1_1:13804563-13804582 | Msa0009430:CDS | 45.0% | |
| GCAGACGGTACAAATTCACT+TGG | + | chr1_1:13804655-13804674 | Msa0009430:CDS | 45.0% | |
| GACGGTACAAATTCACTTGG+AGG | + | chr1_1:13804658-13804677 | Msa0009430:CDS | 45.0% | |
| ! | GCTTGAGTAGTAGTGTTGCT+TGG | + | chr1_1:13804913-13804932 | Msa0009430:three_prime_UTR | 45.0% |
| TGTCACAGATTCGGCATAGA+AGG | + | chr1_1:13804524-13804543 | Msa0009430:intron | 45.0% | |
| ACAAGAGCTGAAAAGGGTAG+CGG | + | chr1_1:13804563-13804582 | Msa0009430:CDS | 45.0% | |
| GCAGACGGTACAAATTCACT+TGG | + | chr1_1:13804655-13804674 | Msa0009430:CDS | 45.0% | |
| GACGGTACAAATTCACTTGG+AGG | + | chr1_1:13804658-13804677 | Msa0009430:CDS | 45.0% | |
| ! | GCTTGAGTAGTAGTGTTGCT+TGG | + | chr1_1:13804913-13804932 | Msa0009430:three_prime_UTR | 45.0% |
| !! | CTGAAAAGGGTAGCGGAGAA+TGG | + | chr1_1:13804570-13804589 | Msa0009430:CDS | 50.0% |
| TTGTGGAGCCTCAACCTAAC+CGG | + | chr1_1:13804681-13804700 | Msa0009430:CDS | 50.0% | |
| ! | GAGTAAGCTGAAGCTTTGGC+CGG | - | chr1_1:13804703-13804722 | None:intergenic | 50.0% |
| AAACTTCAAGTGCGGAGGTG+TGG | - | chr1_1:13804809-13804828 | None:intergenic | 50.0% | |
| ACCTCCGCACTTGAAGTTTC+TGG | + | chr1_1:13804810-13804829 | Msa0009430:three_prime_UTR | 50.0% | |
| ACCAGAAACTTCAAGTGCGG+AGG | - | chr1_1:13804814-13804833 | None:intergenic | 50.0% | |
| !! | CTGAAAAGGGTAGCGGAGAA+TGG | + | chr1_1:13804570-13804589 | Msa0009430:CDS | 50.0% |
| TTGTGGAGCCTCAACCTAAC+CGG | + | chr1_1:13804681-13804700 | Msa0009430:CDS | 50.0% | |
| ! | GAGTAAGCTGAAGCTTTGGC+CGG | - | chr1_1:13804703-13804722 | None:intergenic | 50.0% |
| AAACTTCAAGTGCGGAGGTG+TGG | - | chr1_1:13804809-13804828 | None:intergenic | 50.0% | |
| ACCTCCGCACTTGAAGTTTC+TGG | + | chr1_1:13804810-13804829 | Msa0009430:three_prime_UTR | 50.0% | |
| ACCAGAAACTTCAAGTGCGG+AGG | - | chr1_1:13804814-13804833 | None:intergenic | 50.0% | |
| ! | AGCTTTGGCCGGTTAGGTTG+AGG | - | chr1_1:13804692-13804711 | None:intergenic | 55.0% |
| ! | AGCTGAAGCTTTGGCCGGTT+AGG | - | chr1_1:13804698-13804717 | None:intergenic | 55.0% |
| ! | AGCTTTGGCCGGTTAGGTTG+AGG | - | chr1_1:13804692-13804711 | None:intergenic | 55.0% |
| ! | AGCTGAAGCTTTGGCCGGTT+AGG | - | chr1_1:13804698-13804717 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 13804423 | 13805179 | 13804423 | ID=Msa0009430;Name=Msa0009430 |
| chr1_1 | mRNA | 13804423 | 13805179 | 13804423 | ID=Msa0009430-mRNA-1;Parent=Msa0009430;Name=Msa0009430-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0.5|0.5|1|1|2|449|72 |
| chr1_1 | exon | 13804423 | 13804442 | 13804423 | ID=Msa0009430-mRNA-1:exon:5236;Parent=Msa0009430-mRNA-1 |
| chr1_1 | exon | 13804532 | 13805179 | 13804532 | ID=Msa0009430-mRNA-1:exon:5237;Parent=Msa0009430-mRNA-1 |
| chr1_1 | CDS | 13804423 | 13804442 | 13804423 | ID=Msa0009430-mRNA-1:cds;Parent=Msa0009430-mRNA-1 |
| chr1_1 | CDS | 13804532 | 13804730 | 13804532 | ID=Msa0009430-mRNA-1:cds;Parent=Msa0009430-mRNA-1 |
| chr1_1 | three_prime_UTR | 13804731 | 13805179 | 13804731 | ID=Msa0009430-mRNA-1:three_prime_utr;Parent=Msa0009430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
