Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1046210 | XP_013447780.1 | 97.222 | 252 | 7 | 0 | 1 | 252 | 17 | 268 | 2.68e-175 | 493 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1046210 | sp|P93332|NOD3_MEDTR | 96.032 | 252 | 10 | 0 | 1 | 252 | 17 | 268 | 1.96e-175 | 486 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1046210 | A0A072TX72 | 97.222 | 252 | 7 | 0 | 1 | 252 | 17 | 268 | 1.28e-175 | 493 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024280 | Msa1046210 | 0.837463 | 5.120930e-57 | -8.615850e-47 |
| Msa0059880 | Msa1046210 | 0.805207 | 1.492201e-49 | -8.615850e-47 |
| Msa0120050 | Msa1046210 | 0.821025 | 5.028205e-53 | -8.615850e-47 |
| Msa0604200 | Msa1046210 | 0.800822 | 1.203278e-48 | -8.615850e-47 |
| Msa0605470 | Msa1046210 | 0.822552 | 2.228382e-53 | -8.615850e-47 |
| Msa0631700 | Msa1046210 | 0.806147 | 9.474387e-50 | -8.615850e-47 |
| Msa0643840 | Msa1046210 | 0.823016 | 1.738050e-53 | -8.615850e-47 |
| Msa0670360 | Msa1046210 | 0.831166 | 1.947532e-55 | -8.615850e-47 |
| Msa0727480 | Msa1046210 | 0.832360 | 9.883200e-56 | -8.615850e-47 |
| Msa0768670 | Msa1046210 | 0.857298 | 1.795089e-62 | -8.615850e-47 |
| Msa0768720 | Msa1046210 | 0.843480 | 1.365722e-58 | -8.615850e-47 |
| Msa0841170 | Msa1046210 | 0.804028 | 2.628857e-49 | -8.615850e-47 |
| Msa0143680 | Msa1046210 | 0.827929 | 1.192178e-54 | -8.615850e-47 |
| Msa0143710 | Msa1046210 | 0.818631 | 1.772094e-52 | -8.615850e-47 |
| Msa0143740 | Msa1046210 | 0.807765 | 4.308552e-50 | -8.615850e-47 |
| Msa0143770 | Msa1046210 | 0.802053 | 6.733901e-49 | -8.615850e-47 |
| Msa0147670 | Msa1046210 | 0.801049 | 1.081667e-48 | -8.615850e-47 |
| Msa0150910 | Msa1046210 | 0.805772 | 1.135838e-49 | -8.615850e-47 |
| Msa0163340 | Msa1046210 | 0.873264 | 1.682453e-67 | -8.615850e-47 |
| Msa0414480 | Msa1046210 | 0.807521 | 4.854877e-50 | -8.615850e-47 |
| Msa0985700 | Msa1046210 | 0.819210 | 1.309124e-52 | -8.615850e-47 |
| Msa0985710 | Msa1046210 | 0.820780 | 5.724534e-53 | -8.615850e-47 |
| Msa0987640 | Msa1046210 | 0.813897 | 2.028071e-51 | -8.615850e-47 |
| Msa0993450 | Msa1046210 | 0.814404 | 1.567817e-51 | -8.615850e-47 |
| Msa1003110 | Msa1046210 | 0.914122 | 2.776165e-84 | -8.615850e-47 |
| Msa1021620 | Msa1046210 | 0.872307 | 3.517850e-67 | -8.615850e-47 |
| Msa1022580 | Msa1046210 | 0.804773 | 1.839300e-49 | -8.615850e-47 |
| Msa1046210 | Msa1061670 | 0.812905 | 3.350105e-51 | -8.615850e-47 |
| Msa1046210 | Msa1076830 | 0.812007 | 5.265261e-51 | -8.615850e-47 |
| Msa1046210 | Msa1091000 | 0.940128 | 3.956036e-100 | -8.615850e-47 |
| Msa1046210 | Msa1106960 | 0.804271 | 2.340045e-49 | -8.615850e-47 |
| Msa1046210 | Msa1109880 | 0.819864 | 9.284787e-53 | -8.615850e-47 |
| Msa1046210 | Msa1109890 | 0.815100 | 1.099139e-51 | -8.615850e-47 |
| Msa1046210 | Msa1133860 | 0.907273 | 6.054782e-81 | -8.615850e-47 |
| Msa1046210 | Msa1149020 | 0.857751 | 1.318785e-62 | -8.615850e-47 |
| Msa1046210 | Msa1286420 | 0.805282 | 1.439158e-49 | -8.615850e-47 |
| Msa1046210 | Msa1300610 | 0.816912 | 4.329494e-52 | -8.615850e-47 |
| Msa1046210 | Msa1323120 | 0.842932 | 1.911414e-58 | -8.615850e-47 |
| Msa1046210 | Msa1376070 | 0.815683 | 8.152201e-52 | -8.615850e-47 |
| Msa1046210 | Msa1377520 | 0.832277 | 1.036358e-55 | -8.615850e-47 |
| Msa1046210 | Msa1459610 | 0.819306 | 1.244668e-52 | -8.615850e-47 |
| Msa0343720 | Msa1046210 | 0.800870 | 1.176786e-48 | -8.615850e-47 |
| Msa0535570 | Msa1046210 | 0.819046 | 1.426671e-52 | -8.615850e-47 |
| Msa0549170 | Msa1046210 | 0.807163 | 5.780733e-50 | -8.615850e-47 |
| Msa0549920 | Msa1046210 | 0.831085 | 2.038951e-55 | -8.615850e-47 |
| Msa0579530 | Msa1046210 | 0.833759 | 4.435228e-56 | -8.615850e-47 |
| Msa0591490 | Msa1046210 | 0.809147 | 2.184343e-50 | -8.615850e-47 |
| Msa0883640 | Msa1046210 | 0.822234 | 2.642187e-53 | -8.615850e-47 |
| Msa0893840 | Msa1046210 | 0.806784 | 6.951297e-50 | -8.615850e-47 |
| Msa0910830 | Msa1046210 | 0.829730 | 4.371836e-55 | -8.615850e-47 |
| Msa0913550 | Msa1046210 | 0.814117 | 1.814126e-51 | -8.615850e-47 |
| Msa0951150 | Msa1046210 | 0.812213 | 4.746757e-51 | -8.615850e-47 |
| Msa0960090 | Msa1046210 | 0.823648 | 1.237171e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1046210 | MtrunA17_Chr7g0214191 | 97.222 | 252 | 7 | 0 | 1 | 252 | 17 | 268 | 2.46e-179 | 493 |
| Msa1046210 | MtrunA17_Chr7g0214181 | 79.412 | 238 | 41 | 3 | 1 | 235 | 17 | 249 | 9.54e-125 | 355 |
| Msa1046210 | MtrunA17_Chr5g0428281 | 68.636 | 220 | 63 | 2 | 1 | 220 | 18 | 231 | 4.18e-104 | 303 |
| Msa1046210 | MtrunA17_Chr8g0386011 | 50.840 | 238 | 113 | 2 | 1 | 234 | 17 | 254 | 3.13e-79 | 239 |
| Msa1046210 | MtrunA17_Chr3g0131951 | 49.362 | 235 | 114 | 3 | 1 | 230 | 79 | 313 | 6.00e-76 | 234 |
| Msa1046210 | MtrunA17_Chr8g0386001 | 47.131 | 244 | 105 | 3 | 1 | 243 | 17 | 237 | 1.63e-75 | 230 |
| Msa1046210 | MtrunA17_Chr7g0215601 | 48.770 | 244 | 106 | 2 | 1 | 244 | 18 | 242 | 8.25e-74 | 225 |
| Msa1046210 | MtrunA17_Chr5g0444031 | 46.444 | 239 | 111 | 1 | 1 | 239 | 37 | 258 | 6.57e-73 | 223 |
| Msa1046210 | MtrunA17_Chr3g0131961 | 45.817 | 251 | 130 | 4 | 1 | 247 | 18 | 266 | 1.78e-70 | 217 |
| Msa1046210 | MtrunA17_Chr2g0278491 | 48.035 | 229 | 90 | 5 | 40 | 243 | 1 | 225 | 4.47e-68 | 209 |
| Msa1046210 | MtrunA17_Chr2g0295681 | 42.788 | 208 | 119 | 0 | 1 | 208 | 13 | 220 | 5.33e-51 | 166 |
| Msa1046210 | MtrunA17_Chr3g0125861 | 35.983 | 239 | 144 | 4 | 1 | 237 | 13 | 244 | 5.58e-43 | 146 |
| Msa1046210 | MtrunA17_Chr1g0159431 | 37.500 | 240 | 140 | 4 | 1 | 238 | 13 | 244 | 2.29e-42 | 144 |
| Msa1046210 | MtrunA17_Chr6g0450941 | 37.156 | 218 | 127 | 6 | 1 | 211 | 89 | 303 | 5.95e-39 | 137 |
| Msa1046210 | MtrunA17_Chr8g0359261 | 37.788 | 217 | 125 | 3 | 1 | 215 | 22 | 230 | 7.57e-39 | 135 |
| Msa1046210 | MtrunA17_Chr3g0119951 | 34.553 | 246 | 153 | 5 | 1 | 240 | 16 | 259 | 3.81e-38 | 134 |
| Msa1046210 | MtrunA17_Chr3g0119991 | 34.167 | 240 | 150 | 5 | 7 | 240 | 1 | 238 | 1.40e-36 | 129 |
| Msa1046210 | MtrunA17_Chr2g0314571 | 37.788 | 217 | 123 | 6 | 1 | 212 | 22 | 231 | 2.12e-35 | 126 |
| Msa1046210 | MtrunA17_Chr1g0158931 | 32.520 | 246 | 153 | 5 | 1 | 241 | 14 | 251 | 3.40e-35 | 126 |
| Msa1046210 | MtrunA17_Chr8g0388621 | 33.188 | 229 | 149 | 3 | 1 | 226 | 18 | 245 | 1.00e-34 | 124 |
| Msa1046210 | MtrunA17_Chr6g0450951 | 38.095 | 189 | 108 | 5 | 14 | 196 | 6 | 191 | 9.55e-33 | 119 |
| Msa1046210 | MtrunA17_Chr3g0126411 | 30.672 | 238 | 154 | 5 | 1 | 229 | 14 | 249 | 3.47e-32 | 118 |
| Msa1046210 | MtrunA17_Chr3g0126421 | 30.126 | 239 | 154 | 5 | 1 | 229 | 14 | 249 | 3.82e-32 | 118 |
| Msa1046210 | MtrunA17_Chr6g0450931 | 33.990 | 203 | 127 | 5 | 14 | 211 | 6 | 206 | 9.35e-31 | 113 |
| Msa1046210 | MtrunA17_Chr4g0059191 | 31.707 | 205 | 134 | 2 | 9 | 211 | 1 | 201 | 9.90e-29 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1046210 | AT5G13170.1 | 63.052 | 249 | 87 | 3 | 1 | 246 | 19 | 265 | 1.99e-105 | 307 |
| Msa1046210 | AT3G48740.1 | 50.382 | 262 | 119 | 3 | 1 | 251 | 19 | 280 | 8.83e-87 | 259 |
| Msa1046210 | AT5G23660.1 | 57.466 | 221 | 94 | 0 | 1 | 221 | 19 | 239 | 3.03e-86 | 258 |
| Msa1046210 | AT5G50790.1 | 48.120 | 266 | 117 | 2 | 1 | 245 | 17 | 282 | 8.96e-85 | 254 |
| Msa1046210 | AT5G50800.1 | 58.294 | 211 | 87 | 1 | 1 | 210 | 17 | 227 | 1.32e-77 | 236 |
| Msa1046210 | AT4G25010.1 | 48.864 | 264 | 118 | 4 | 1 | 247 | 17 | 280 | 1.72e-75 | 231 |
| Msa1046210 | AT2G39060.1 | 46.667 | 240 | 123 | 1 | 1 | 240 | 17 | 251 | 5.09e-69 | 213 |
| Msa1046210 | AT3G16690.1 | 39.171 | 217 | 129 | 2 | 1 | 215 | 13 | 228 | 4.02e-51 | 167 |
| Msa1046210 | AT3G16690.3 | 39.171 | 217 | 129 | 2 | 1 | 215 | 48 | 263 | 8.63e-51 | 167 |
| Msa1046210 | AT4G15920.1 | 42.000 | 200 | 115 | 1 | 1 | 199 | 13 | 212 | 1.43e-50 | 166 |
| Msa1046210 | AT1G21460.1 | 38.211 | 246 | 137 | 4 | 1 | 243 | 13 | 246 | 2.22e-46 | 155 |
| Msa1046210 | AT4G10850.1 | 34.583 | 240 | 150 | 4 | 1 | 233 | 18 | 257 | 1.19e-39 | 138 |
| Msa1046210 | AT5G53190.1 | 32.296 | 257 | 143 | 8 | 1 | 241 | 14 | 255 | 1.11e-34 | 125 |
| Msa1046210 | AT5G40260.1 | 37.089 | 213 | 125 | 6 | 1 | 205 | 16 | 227 | 2.68e-34 | 124 |
| Msa1046210 | AT5G62850.1 | 34.101 | 217 | 132 | 5 | 1 | 209 | 16 | 229 | 5.61e-34 | 123 |
| Msa1046210 | AT1G21460.2 | 38.947 | 190 | 113 | 2 | 1 | 188 | 13 | 201 | 2.01e-33 | 120 |
| Msa1046210 | AT3G14770.1 | 36.486 | 222 | 119 | 8 | 1 | 212 | 22 | 231 | 3.50e-32 | 118 |
| Msa1046210 | AT1G66770.1 | 32.243 | 214 | 138 | 3 | 1 | 209 | 18 | 229 | 1.23e-31 | 117 |
| Msa1046210 | AT5G40260.2 | 38.068 | 176 | 103 | 4 | 1 | 171 | 16 | 190 | 2.82e-30 | 112 |
| Msa1046210 | AT5G62850.2 | 34.884 | 172 | 104 | 4 | 1 | 167 | 16 | 184 | 1.09e-26 | 103 |
| Msa1046210 | AT3G28007.1 | 35.176 | 199 | 125 | 3 | 1 | 196 | 16 | 213 | 7.40e-26 | 102 |
| Msa1046210 | AT3G16690.2 | 34.752 | 141 | 89 | 2 | 1 | 139 | 13 | 152 | 8.05e-25 | 97.8 |
Find 59 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTCGTTCTTGGTGTTCT+TGG | 0.169280 | 7_2:+6719029 | Msa1046210:CDS |
| CACACATCCAAATGAGTTTA+TGG | 0.188728 | 7_2:-6719281 | None:intergenic |
| CCACTTCGTGTCCAAGTTCT+TGG | 0.244317 | 7_2:+6719557 | Msa1046210:CDS |
| TCGATTTCTTCTTGTATATA+CGG | 0.244759 | 7_2:-6719159 | None:intergenic |
| CTCATTACCATAAACTCATT+TGG | 0.319248 | 7_2:+6719274 | Msa1046210:CDS |
| AGGTAACGTCATTTCGTTCT+TGG | 0.323739 | 7_2:+6719020 | None:intergenic |
| CTTAACTTTCAAGTTACTTT+CGG | 0.328483 | 7_2:+6719475 | Msa1046210:CDS |
| AATGTGTTGGGTTTCGTATT+GGG | 0.328786 | 7_2:+6720111 | Msa1046210:CDS |
| CTTTGTTCAGCTCCATGCTT+TGG | 0.359151 | 7_2:+6719215 | Msa1046210:CDS |
| AATACGAAACCCAACACATT+TGG | 0.368529 | 7_2:-6720108 | None:intergenic |
| AAATGTGTTGGGTTTCGTAT+TGG | 0.380441 | 7_2:+6720110 | Msa1046210:CDS |
| CACAAACCCATCCAAGAACT+TGG | 0.408159 | 7_2:-6719568 | None:intergenic |
| ATTTAAACTCCAGAGCCAAT+AGG | 0.432197 | 7_2:-6720315 | None:intergenic |
| TTCGTGTCCAAGTTCTTGGA+TGG | 0.434485 | 7_2:+6719561 | Msa1046210:CDS |
| ATACGAAACCCAACACATTT+GGG | 0.439248 | 7_2:-6720107 | None:intergenic |
| TGCTGCTGTATGCAATCTAT+AGG | 0.452278 | 7_2:+6720145 | Msa1046210:CDS |
| AATAATACCCTTGCATCTCT+TGG | 0.455895 | 7_2:-6719343 | None:intergenic |
| GTTCAAAGTGAGGAACCTAT+TGG | 0.474459 | 7_2:+6720300 | Msa1046210:CDS |
| AGTGAGGAACCTATTGGCTC+TGG | 0.490260 | 7_2:+6720306 | Msa1046210:CDS |
| GTACATACCACAATGCTTAG+TGG | 0.491986 | 7_2:-6719620 | None:intergenic |
| GCCACAATGTGGTTTGGCTA+CGG | 0.514248 | 7_2:+6719808 | Msa1046210:CDS |
| TTGAGTGCCACAATGTGGTT+TGG | 0.514750 | 7_2:+6719802 | Msa1046210:CDS |
| TCGTGTCCAAGTTCTTGGAT+GGG | 0.519498 | 7_2:+6719562 | Msa1046210:CDS |
| CTGAACAAAGCTACTAGGTA+AGG | 0.520832 | 7_2:-6719202 | None:intergenic |
| TGGAGCTGAACAAAGCTACT+AGG | 0.521833 | 7_2:-6719207 | None:intergenic |
| CTGCAAAGACACTAACACTA+AGG | 0.526938 | 7_2:-6719595 | None:intergenic |
| GTGCAGCTCCCAAATGTGTT+GGG | 0.530668 | 7_2:+6720099 | Msa1046210:intron |
| GAACAAGGGTGATGATAATG+AGG | 0.540496 | 7_2:+6720272 | Msa1046210:CDS |
| ATGCAATCTATAGGAATGGT+GGG | 0.547366 | 7_2:+6720154 | Msa1046210:CDS |
| CAAATGAGTTTATGGTAATG+AGG | 0.551806 | 7_2:-6719273 | None:intergenic |
| CATAAACTCATTTGGATGTG+TGG | 0.553344 | 7_2:+6719282 | Msa1046210:CDS |
| GTTACTTTCGGCAATGAACG+TGG | 0.564481 | 7_2:+6719487 | Msa1046210:CDS |
| TACAAGAAGAAATCGACAGA+GGG | 0.564739 | 7_2:+6719166 | Msa1046210:CDS |
| GACACGAAGTGGACCATGCA+CGG | 0.579340 | 7_2:-6719546 | None:intergenic |
| TGGCTACGGTCTCTTCCTCA+AGG | 0.581206 | 7_2:+6719822 | Msa1046210:CDS |
| TGTGCAGCTCCCAAATGTGT+TGG | 0.581637 | 7_2:+6720098 | Msa1046210:intron |
| TATTGTTATAGAGACCCAAT+CGG | 0.581864 | 7_2:+6720227 | Msa1046210:CDS |
| GATGTACAATATGATGTAGA+TGG | 0.583280 | 7_2:-6719311 | None:intergenic |
| GTCACTAACTATGCCGTGCA+TGG | 0.586420 | 7_2:+6719533 | Msa1046210:CDS |
| CCAAGAACTTGGACACGAAG+TGG | 0.588617 | 7_2:-6719557 | None:intergenic |
| CGGCATAGTTAGTGACTATG+AGG | 0.591246 | 7_2:-6719526 | None:intergenic |
| GACTATGAGGATCAAAGCAA+AGG | 0.596059 | 7_2:-6719513 | None:intergenic |
| CTGTATGCAATCTATAGGAA+TGG | 0.607405 | 7_2:+6720150 | Msa1046210:CDS |
| CTATGCACCAAGAGATGCAA+GGG | 0.607841 | 7_2:+6719336 | Msa1046210:CDS |
| TGCATAGTACAACCAAAGCA+TGG | 0.611574 | 7_2:-6719227 | None:intergenic |
| TATGCAATCTATAGGAATGG+TGG | 0.615800 | 7_2:+6720153 | Msa1046210:CDS |
| CAGCAATGCATATGTCCTTG+AGG | 0.616655 | 7_2:-6719837 | None:intergenic |
| AGAGTGAATGACAAATTGAA+AGG | 0.622293 | 7_2:-6719775 | None:intergenic |
| TACTTTCGGCAATGAACGTG+GGG | 0.627256 | 7_2:+6719489 | Msa1046210:CDS |
| TTACTTTCGGCAATGAACGT+GGG | 0.632501 | 7_2:+6719488 | Msa1046210:CDS |
| TGCAAAGACACTAACACTAA+GGG | 0.634955 | 7_2:-6719594 | None:intergenic |
| TGCAATCTATAGGAATGGTG+GGG | 0.637303 | 7_2:+6720155 | Msa1046210:CDS |
| TGCAGCACCACTAAGCATTG+TGG | 0.637500 | 7_2:+6719613 | Msa1046210:CDS |
| TGAACAAGAAAAGAAGAACA+AGG | 0.638374 | 7_2:+6720257 | Msa1046210:CDS |
| GAACAAGAAAAGAAGAACAA+GGG | 0.658330 | 7_2:+6720258 | Msa1046210:CDS |
| TCTATGCACCAAGAGATGCA+AGG | 0.675820 | 7_2:+6719335 | Msa1046210:CDS |
| TCACATTGAGTGCCACAATG+TGG | 0.691357 | 7_2:+6719797 | Msa1046210:CDS |
| ATACAAGAAGAAATCGACAG+AGG | 0.715649 | 7_2:+6719165 | Msa1046210:CDS |
| ACCGTAGCCAAACCACATTG+TGG | 0.726020 | 7_2:-6719809 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAATAAATACTTACAT+TGG | - | chr7_2:6719057-6719076 | None:intergenic | 10.0% |
| !! | CATTCAATAATAAATATTTA+AGG | - | chr7_2:6719450-6719469 | None:intergenic | 10.0% |
| !! | TTATATATATTAATTGAGTA+AGG | - | chr7_2:6719657-6719676 | None:intergenic | 10.0% |
| !! | AAAAGAAAAAATAAAATTAG+TGG | + | chr7_2:6719881-6719900 | Msa1046210:intron | 10.0% |
| !! | ATTTAAATAAATACTTACAT+TGG | - | chr7_2:6719057-6719076 | None:intergenic | 10.0% |
| !! | CATTCAATAATAAATATTTA+AGG | - | chr7_2:6719450-6719469 | None:intergenic | 10.0% |
| !! | TTATATATATTAATTGAGTA+AGG | - | chr7_2:6719657-6719676 | None:intergenic | 10.0% |
| !! | AAAAGAAAAAATAAAATTAG+TGG | + | chr7_2:6719881-6719900 | Msa1046210:intron | 10.0% |
| !! | AGATATTAATGTTCAATTAT+TGG | - | chr7_2:6719398-6719417 | None:intergenic | 15.0% |
| !!! | TTTTCTTGAAATTTATATGT+AGG | + | chr7_2:6719717-6719736 | Msa1046210:intron | 15.0% |
| !! | GATTTCATCAAAAAATAATT+AGG | - | chr7_2:6720006-6720025 | None:intergenic | 15.0% |
| !! | AGATATTAATGTTCAATTAT+TGG | - | chr7_2:6719398-6719417 | None:intergenic | 15.0% |
| !!! | TTTTCTTGAAATTTATATGT+AGG | + | chr7_2:6719717-6719736 | Msa1046210:intron | 15.0% |
| !! | GATTTCATCAAAAAATAATT+AGG | - | chr7_2:6720006-6720025 | None:intergenic | 15.0% |
| !! | TTAATGTTCAATTATTGGAT+TGG | - | chr7_2:6719393-6719412 | None:intergenic | 20.0% |
| !!! | AGTTTGATTTATGAACTTAA+TGG | + | chr7_2:6719685-6719704 | Msa1046210:intron | 20.0% |
| !! | AAAACAATCAAATTATGACA+AGG | - | chr7_2:6719930-6719949 | None:intergenic | 20.0% |
| !! | TTAATGTTCAATTATTGGAT+TGG | - | chr7_2:6719393-6719412 | None:intergenic | 20.0% |
| !!! | AGTTTGATTTATGAACTTAA+TGG | + | chr7_2:6719685-6719704 | Msa1046210:intron | 20.0% |
| !! | AAAACAATCAAATTATGACA+AGG | - | chr7_2:6719930-6719949 | None:intergenic | 20.0% |
| ! | TCGATTTCTTCTTGTATATA+CGG | - | chr7_2:6719162-6719181 | None:intergenic | 25.0% |
| !!! | CTTAACTTTCAAGTTACTTT+CGG | + | chr7_2:6719475-6719494 | Msa1046210:CDS | 25.0% |
| !! | TCTATAACAATACTTTTGAG+TGG | - | chr7_2:6720219-6720238 | None:intergenic | 25.0% |
| !!! | TTGTTCAATTTTTTCCGATT+GGG | - | chr7_2:6720244-6720263 | None:intergenic | 25.0% |
| ! | TCGATTTCTTCTTGTATATA+CGG | - | chr7_2:6719162-6719181 | None:intergenic | 25.0% |
| !!! | CTTAACTTTCAAGTTACTTT+CGG | + | chr7_2:6719475-6719494 | Msa1046210:CDS | 25.0% |
| !! | TCTATAACAATACTTTTGAG+TGG | - | chr7_2:6720219-6720238 | None:intergenic | 25.0% |
| !!! | TTGTTCAATTTTTTCCGATT+GGG | - | chr7_2:6720244-6720263 | None:intergenic | 25.0% |
| ! | CAAATGAGTTTATGGTAATG+AGG | - | chr7_2:6719276-6719295 | None:intergenic | 30.0% |
| CTCATTACCATAAACTCATT+TGG | + | chr7_2:6719274-6719293 | Msa1046210:CDS | 30.0% | |
| GATGTACAATATGATGTAGA+TGG | - | chr7_2:6719314-6719333 | None:intergenic | 30.0% | |
| AGAGTGAATGACAAATTGAA+AGG | - | chr7_2:6719778-6719797 | None:intergenic | 30.0% | |
| TGGGGAAAAAACTATGAAAA+AGG | + | chr7_2:6720173-6720192 | Msa1046210:CDS | 30.0% | |
| TATTGTTATAGAGACCCAAT+CGG | + | chr7_2:6720227-6720246 | Msa1046210:CDS | 30.0% | |
| !!! | CTTGTTCAATTTTTTCCGAT+TGG | - | chr7_2:6720245-6720264 | None:intergenic | 30.0% |
| TGAACAAGAAAAGAAGAACA+AGG | + | chr7_2:6720257-6720276 | Msa1046210:CDS | 30.0% | |
| GAACAAGAAAAGAAGAACAA+GGG | + | chr7_2:6720258-6720277 | Msa1046210:CDS | 30.0% | |
| ! | CAAATGAGTTTATGGTAATG+AGG | - | chr7_2:6719276-6719295 | None:intergenic | 30.0% |
| CTCATTACCATAAACTCATT+TGG | + | chr7_2:6719274-6719293 | Msa1046210:CDS | 30.0% | |
| GATGTACAATATGATGTAGA+TGG | - | chr7_2:6719314-6719333 | None:intergenic | 30.0% | |
| AGAGTGAATGACAAATTGAA+AGG | - | chr7_2:6719778-6719797 | None:intergenic | 30.0% | |
| TGGGGAAAAAACTATGAAAA+AGG | + | chr7_2:6720173-6720192 | Msa1046210:CDS | 30.0% | |
| TATTGTTATAGAGACCCAAT+CGG | + | chr7_2:6720227-6720246 | Msa1046210:CDS | 30.0% | |
| !!! | CTTGTTCAATTTTTTCCGAT+TGG | - | chr7_2:6720245-6720264 | None:intergenic | 30.0% |
| TGAACAAGAAAAGAAGAACA+AGG | + | chr7_2:6720257-6720276 | Msa1046210:CDS | 30.0% | |
| GAACAAGAAAAGAAGAACAA+GGG | + | chr7_2:6720258-6720277 | Msa1046210:CDS | 30.0% | |
| ATACAAGAAGAAATCGACAG+AGG | + | chr7_2:6719165-6719184 | Msa1046210:CDS | 35.0% | |
| TACAAGAAGAAATCGACAGA+GGG | + | chr7_2:6719166-6719185 | Msa1046210:CDS | 35.0% | |
| CACACATCCAAATGAGTTTA+TGG | - | chr7_2:6719284-6719303 | None:intergenic | 35.0% | |
| CATAAACTCATTTGGATGTG+TGG | + | chr7_2:6719282-6719301 | Msa1046210:CDS | 35.0% | |
| AATAATACCCTTGCATCTCT+TGG | - | chr7_2:6719346-6719365 | None:intergenic | 35.0% | |
| TGCAAAGACACTAACACTAA+GGG | - | chr7_2:6719597-6719616 | None:intergenic | 35.0% | |
| ATACGAAACCCAACACATTT+GGG | - | chr7_2:6720110-6720129 | None:intergenic | 35.0% | |
| AATACGAAACCCAACACATT+TGG | - | chr7_2:6720111-6720130 | None:intergenic | 35.0% | |
| AAATGTGTTGGGTTTCGTAT+TGG | + | chr7_2:6720110-6720129 | Msa1046210:CDS | 35.0% | |
| AATGTGTTGGGTTTCGTATT+GGG | + | chr7_2:6720111-6720130 | Msa1046210:CDS | 35.0% | |
| CTGTATGCAATCTATAGGAA+TGG | + | chr7_2:6720150-6720169 | Msa1046210:CDS | 35.0% | |
| TATGCAATCTATAGGAATGG+TGG | + | chr7_2:6720153-6720172 | Msa1046210:CDS | 35.0% | |
| ATGCAATCTATAGGAATGGT+GGG | + | chr7_2:6720154-6720173 | Msa1046210:CDS | 35.0% | |
| !! | ATACTTTTGAGTGGCTCAAT+TGG | - | chr7_2:6720210-6720229 | None:intergenic | 35.0% |
| TGAGGAAAAAGTTCAAAGTG+AGG | + | chr7_2:6720290-6720309 | Msa1046210:CDS | 35.0% | |
| ATACAAGAAGAAATCGACAG+AGG | + | chr7_2:6719165-6719184 | Msa1046210:CDS | 35.0% | |
| TACAAGAAGAAATCGACAGA+GGG | + | chr7_2:6719166-6719185 | Msa1046210:CDS | 35.0% | |
| CACACATCCAAATGAGTTTA+TGG | - | chr7_2:6719284-6719303 | None:intergenic | 35.0% | |
| CATAAACTCATTTGGATGTG+TGG | + | chr7_2:6719282-6719301 | Msa1046210:CDS | 35.0% | |
| AATAATACCCTTGCATCTCT+TGG | - | chr7_2:6719346-6719365 | None:intergenic | 35.0% | |
| TGCAAAGACACTAACACTAA+GGG | - | chr7_2:6719597-6719616 | None:intergenic | 35.0% | |
| ATACGAAACCCAACACATTT+GGG | - | chr7_2:6720110-6720129 | None:intergenic | 35.0% | |
| AATACGAAACCCAACACATT+TGG | - | chr7_2:6720111-6720130 | None:intergenic | 35.0% | |
| AAATGTGTTGGGTTTCGTAT+TGG | + | chr7_2:6720110-6720129 | Msa1046210:CDS | 35.0% | |
| AATGTGTTGGGTTTCGTATT+GGG | + | chr7_2:6720111-6720130 | Msa1046210:CDS | 35.0% | |
| CTGTATGCAATCTATAGGAA+TGG | + | chr7_2:6720150-6720169 | Msa1046210:CDS | 35.0% | |
| TATGCAATCTATAGGAATGG+TGG | + | chr7_2:6720153-6720172 | Msa1046210:CDS | 35.0% | |
| ATGCAATCTATAGGAATGGT+GGG | + | chr7_2:6720154-6720173 | Msa1046210:CDS | 35.0% | |
| !! | ATACTTTTGAGTGGCTCAAT+TGG | - | chr7_2:6720210-6720229 | None:intergenic | 35.0% |
| TGAGGAAAAAGTTCAAAGTG+AGG | + | chr7_2:6720290-6720309 | Msa1046210:CDS | 35.0% | |
| !! | CATTTCGTTCTTGGTGTTCT+TGG | + | chr7_2:6719029-6719048 | Msa1046210:CDS | 40.0% |
| CTGAACAAAGCTACTAGGTA+AGG | - | chr7_2:6719205-6719224 | None:intergenic | 40.0% | |
| TGCATAGTACAACCAAAGCA+TGG | - | chr7_2:6719230-6719249 | None:intergenic | 40.0% | |
| TTACTTTCGGCAATGAACGT+GGG | + | chr7_2:6719488-6719507 | Msa1046210:CDS | 40.0% | |
| GACTATGAGGATCAAAGCAA+AGG | - | chr7_2:6719516-6719535 | None:intergenic | 40.0% | |
| CTGCAAAGACACTAACACTA+AGG | - | chr7_2:6719598-6719617 | None:intergenic | 40.0% | |
| GTACATACCACAATGCTTAG+TGG | - | chr7_2:6719623-6719642 | None:intergenic | 40.0% | |
| TGCTGCTGTATGCAATCTAT+AGG | + | chr7_2:6720145-6720164 | Msa1046210:CDS | 40.0% | |
| TGCAATCTATAGGAATGGTG+GGG | + | chr7_2:6720155-6720174 | Msa1046210:CDS | 40.0% | |
| ! | GAACAAGGGTGATGATAATG+AGG | + | chr7_2:6720272-6720291 | Msa1046210:CDS | 40.0% |
| GTTCAAAGTGAGGAACCTAT+TGG | + | chr7_2:6720300-6720319 | Msa1046210:CDS | 40.0% | |
| !! | CATTTCGTTCTTGGTGTTCT+TGG | + | chr7_2:6719029-6719048 | Msa1046210:CDS | 40.0% |
| CTGAACAAAGCTACTAGGTA+AGG | - | chr7_2:6719205-6719224 | None:intergenic | 40.0% | |
| TGCATAGTACAACCAAAGCA+TGG | - | chr7_2:6719230-6719249 | None:intergenic | 40.0% | |
| TTACTTTCGGCAATGAACGT+GGG | + | chr7_2:6719488-6719507 | Msa1046210:CDS | 40.0% | |
| GACTATGAGGATCAAAGCAA+AGG | - | chr7_2:6719516-6719535 | None:intergenic | 40.0% | |
| CTGCAAAGACACTAACACTA+AGG | - | chr7_2:6719598-6719617 | None:intergenic | 40.0% | |
| GTACATACCACAATGCTTAG+TGG | - | chr7_2:6719623-6719642 | None:intergenic | 40.0% | |
| TGCTGCTGTATGCAATCTAT+AGG | + | chr7_2:6720145-6720164 | Msa1046210:CDS | 40.0% | |
| TGCAATCTATAGGAATGGTG+GGG | + | chr7_2:6720155-6720174 | Msa1046210:CDS | 40.0% | |
| ! | GAACAAGGGTGATGATAATG+AGG | + | chr7_2:6720272-6720291 | Msa1046210:CDS | 40.0% |
| GTTCAAAGTGAGGAACCTAT+TGG | + | chr7_2:6720300-6720319 | Msa1046210:CDS | 40.0% | |
| TGGAGCTGAACAAAGCTACT+AGG | - | chr7_2:6719210-6719229 | None:intergenic | 45.0% | |
| CTTTGTTCAGCTCCATGCTT+TGG | + | chr7_2:6719215-6719234 | Msa1046210:CDS | 45.0% | |
| TCTATGCACCAAGAGATGCA+AGG | + | chr7_2:6719335-6719354 | Msa1046210:CDS | 45.0% | |
| CTATGCACCAAGAGATGCAA+GGG | + | chr7_2:6719336-6719355 | Msa1046210:CDS | 45.0% | |
| ! | GTTACTTTCGGCAATGAACG+TGG | + | chr7_2:6719487-6719506 | Msa1046210:CDS | 45.0% |
| TACTTTCGGCAATGAACGTG+GGG | + | chr7_2:6719489-6719508 | Msa1046210:CDS | 45.0% | |
| CGGCATAGTTAGTGACTATG+AGG | - | chr7_2:6719529-6719548 | None:intergenic | 45.0% | |
| TTCGTGTCCAAGTTCTTGGA+TGG | + | chr7_2:6719561-6719580 | Msa1046210:CDS | 45.0% | |
| TCGTGTCCAAGTTCTTGGAT+GGG | + | chr7_2:6719562-6719581 | Msa1046210:CDS | 45.0% | |
| CACAAACCCATCCAAGAACT+TGG | - | chr7_2:6719571-6719590 | None:intergenic | 45.0% | |
| TCACATTGAGTGCCACAATG+TGG | + | chr7_2:6719797-6719816 | Msa1046210:CDS | 45.0% | |
| TTGAGTGCCACAATGTGGTT+TGG | + | chr7_2:6719802-6719821 | Msa1046210:CDS | 45.0% | |
| CAGCAATGCATATGTCCTTG+AGG | - | chr7_2:6719840-6719859 | None:intergenic | 45.0% | |
| TGGAGCTGAACAAAGCTACT+AGG | - | chr7_2:6719210-6719229 | None:intergenic | 45.0% | |
| CTTTGTTCAGCTCCATGCTT+TGG | + | chr7_2:6719215-6719234 | Msa1046210:CDS | 45.0% | |
| TCTATGCACCAAGAGATGCA+AGG | + | chr7_2:6719335-6719354 | Msa1046210:CDS | 45.0% | |
| CTATGCACCAAGAGATGCAA+GGG | + | chr7_2:6719336-6719355 | Msa1046210:CDS | 45.0% | |
| ! | GTTACTTTCGGCAATGAACG+TGG | + | chr7_2:6719487-6719506 | Msa1046210:CDS | 45.0% |
| TACTTTCGGCAATGAACGTG+GGG | + | chr7_2:6719489-6719508 | Msa1046210:CDS | 45.0% | |
| CGGCATAGTTAGTGACTATG+AGG | - | chr7_2:6719529-6719548 | None:intergenic | 45.0% | |
| TTCGTGTCCAAGTTCTTGGA+TGG | + | chr7_2:6719561-6719580 | Msa1046210:CDS | 45.0% | |
| TCGTGTCCAAGTTCTTGGAT+GGG | + | chr7_2:6719562-6719581 | Msa1046210:CDS | 45.0% | |
| CACAAACCCATCCAAGAACT+TGG | - | chr7_2:6719571-6719590 | None:intergenic | 45.0% | |
| TCACATTGAGTGCCACAATG+TGG | + | chr7_2:6719797-6719816 | Msa1046210:CDS | 45.0% | |
| TTGAGTGCCACAATGTGGTT+TGG | + | chr7_2:6719802-6719821 | Msa1046210:CDS | 45.0% | |
| CAGCAATGCATATGTCCTTG+AGG | - | chr7_2:6719840-6719859 | None:intergenic | 45.0% | |
| GTCACTAACTATGCCGTGCA+TGG | + | chr7_2:6719533-6719552 | Msa1046210:CDS | 50.0% | |
| CCAAGAACTTGGACACGAAG+TGG | - | chr7_2:6719560-6719579 | None:intergenic | 50.0% | |
| CCACTTCGTGTCCAAGTTCT+TGG | + | chr7_2:6719557-6719576 | Msa1046210:CDS | 50.0% | |
| ! | TGCAGCACCACTAAGCATTG+TGG | + | chr7_2:6719613-6719632 | Msa1046210:CDS | 50.0% |
| ! | GCCACAATGTGGTTTGGCTA+CGG | + | chr7_2:6719808-6719827 | Msa1046210:CDS | 50.0% |
| ACCGTAGCCAAACCACATTG+TGG | - | chr7_2:6719812-6719831 | None:intergenic | 50.0% | |
| TGTGCAGCTCCCAAATGTGT+TGG | + | chr7_2:6720098-6720117 | Msa1046210:intron | 50.0% | |
| GTGCAGCTCCCAAATGTGTT+GGG | + | chr7_2:6720099-6720118 | Msa1046210:intron | 50.0% | |
| !! | AGTGAGGAACCTATTGGCTC+TGG | + | chr7_2:6720306-6720325 | Msa1046210:CDS | 50.0% |
| GTCACTAACTATGCCGTGCA+TGG | + | chr7_2:6719533-6719552 | Msa1046210:CDS | 50.0% | |
| CCAAGAACTTGGACACGAAG+TGG | - | chr7_2:6719560-6719579 | None:intergenic | 50.0% | |
| CCACTTCGTGTCCAAGTTCT+TGG | + | chr7_2:6719557-6719576 | Msa1046210:CDS | 50.0% | |
| ! | TGCAGCACCACTAAGCATTG+TGG | + | chr7_2:6719613-6719632 | Msa1046210:CDS | 50.0% |
| ! | GCCACAATGTGGTTTGGCTA+CGG | + | chr7_2:6719808-6719827 | Msa1046210:CDS | 50.0% |
| ACCGTAGCCAAACCACATTG+TGG | - | chr7_2:6719812-6719831 | None:intergenic | 50.0% | |
| TGTGCAGCTCCCAAATGTGT+TGG | + | chr7_2:6720098-6720117 | Msa1046210:intron | 50.0% | |
| GTGCAGCTCCCAAATGTGTT+GGG | + | chr7_2:6720099-6720118 | Msa1046210:intron | 50.0% | |
| !! | AGTGAGGAACCTATTGGCTC+TGG | + | chr7_2:6720306-6720325 | Msa1046210:CDS | 50.0% |
| GACACGAAGTGGACCATGCA+CGG | - | chr7_2:6719549-6719568 | None:intergenic | 55.0% | |
| TGGCTACGGTCTCTTCCTCA+AGG | + | chr7_2:6719822-6719841 | Msa1046210:CDS | 55.0% | |
| GACACGAAGTGGACCATGCA+CGG | - | chr7_2:6719549-6719568 | None:intergenic | 55.0% | |
| TGGCTACGGTCTCTTCCTCA+AGG | + | chr7_2:6719822-6719841 | Msa1046210:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 6719024 | 6720332 | 6719024 | ID=Msa1046210;Name=Msa1046210 |
| chr7_2 | mRNA | 6719024 | 6720332 | 6719024 | ID=Msa1046210-mRNA-1;Parent=Msa1046210;Name=Msa1046210-mRNA-1;_AED=0.04;_eAED=0.05;_QI=0|0|0|1|1|0.6|5|0|252 |
| chr7_2 | exon | 6719024 | 6719058 | 6719024 | ID=Msa1046210-mRNA-1:exon:1550;Parent=Msa1046210-mRNA-1 |
| chr7_2 | exon | 6719147 | 6719357 | 6719147 | ID=Msa1046210-mRNA-1:exon:1551;Parent=Msa1046210-mRNA-1 |
| chr7_2 | exon | 6719473 | 6719634 | 6719473 | ID=Msa1046210-mRNA-1:exon:1552;Parent=Msa1046210-mRNA-1 |
| chr7_2 | exon | 6719739 | 6719858 | 6719739 | ID=Msa1046210-mRNA-1:exon:1553;Parent=Msa1046210-mRNA-1 |
| chr7_2 | exon | 6720105 | 6720332 | 6720105 | ID=Msa1046210-mRNA-1:exon:1554;Parent=Msa1046210-mRNA-1 |
| chr7_2 | CDS | 6719024 | 6719058 | 6719024 | ID=Msa1046210-mRNA-1:cds;Parent=Msa1046210-mRNA-1 |
| chr7_2 | CDS | 6719147 | 6719357 | 6719147 | ID=Msa1046210-mRNA-1:cds;Parent=Msa1046210-mRNA-1 |
| chr7_2 | CDS | 6719473 | 6719634 | 6719473 | ID=Msa1046210-mRNA-1:cds;Parent=Msa1046210-mRNA-1 |
| chr7_2 | CDS | 6719739 | 6719858 | 6719739 | ID=Msa1046210-mRNA-1:cds;Parent=Msa1046210-mRNA-1 |
| chr7_2 | CDS | 6720105 | 6720332 | 6720105 | ID=Msa1046210-mRNA-1:cds;Parent=Msa1046210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
