AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0604200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0604200 MtrunA17_Chr4g0033291 79.878 328 35 6 1 315 1 310 7.78e-176 489
Msa0604200 MtrunA17_Chr4g0033281 80.308 325 36 4 1 315 1 307 1.38e-173 484
Msa0604200 MtrunA17_Chr4g0033391 76.453 327 40 6 1 315 1 302 4.74e-171 477
Msa0604200 MtrunA17_Chr2g0307131 59.831 356 83 7 1 315 1 337 3.37e-129 372
Msa0604200 MtrunA17_Chr2g0307141 58.146 356 93 7 1 315 1 341 2.00e-118 345
Msa0604200 MtrunA17_Chr6g0468491 61.661 313 82 10 23 315 1 295 5.20e-116 337
Msa0604200 MtrunA17_Chr6g0468461 55.132 341 95 10 1 311 1 313 2.45e-103 306
Msa0604200 MtrunA17_Chr7g0225901 56.000 300 63 7 23 311 1 242 2.26e-99 293
Msa0604200 MtrunA17_Chr4g0054581 50.273 366 125 8 1 315 1 360 2.50e-94 284
Msa0604200 MtrunA17_Chr4g0054621 45.402 348 132 12 1 315 1 323 1.58e-75 235
Msa0604200 MtrunA17_Chr5g0400621 42.173 313 150 8 17 315 20 315 2.82e-57 187
Msa0604200 MtrunA17_Chr5g0400641 52.795 161 58 5 170 316 1 157 2.69e-41 141
Msa0604200 MtrunA17_Chr5g0400661 35.866 329 158 10 13 309 7 314 2.93e-38 138
Msa0604200 MtrunA17_Chr4g0054551 36.475 244 123 6 93 309 67 305 3.60e-36 132
Msa0604200 MtrunA17_Chr8g0336681 37.838 222 113 4 105 309 102 315 5.72e-36 132
Msa0604200 MtrunA17_Chr2g0280161 45.679 162 75 2 159 309 171 330 1.06e-34 129
Msa0604200 MtrunA17_Chr4g0049331 37.238 239 125 5 90 309 55 287 1.08e-34 128
Msa0604200 MtrunA17_Chr4g0054561 35.246 244 126 6 93 309 67 305 2.67e-34 127
Msa0604200 MtrunA17_Chr4g0002801 40.761 184 88 6 148 310 128 311 3.75e-34 127
Msa0604200 MtrunA17_Chr4g0054571 35.987 314 150 14 13 309 30 309 2.08e-33 125
Msa0604200 MtrunA17_Chr4g0002781 35.897 234 114 7 98 310 112 330 1.74e-32 123
Msa0604200 MtrunA17_Chr2g0333641 36.066 244 132 8 78 310 58 288 2.28e-32 122
Msa0604200 MtrunA17_Chr5g0400671 36.898 187 90 4 142 309 126 303 3.04e-32 122
Msa0604200 MtrunA17_Chr2g0333621 36.239 218 120 4 105 310 82 292 4.02e-31 119
Msa0604200 MtrunA17_Chr2g0333541 41.714 175 86 5 156 315 81 254 6.56e-30 114
Msa0604200 MtrunA17_Chr7g0249811 39.037 187 106 4 126 309 127 308 4.61e-29 114
Msa0604200 MtrunA17_Chr2g0333611 37.870 169 93 5 153 310 29 196 1.19e-26 104
Msa0604200 MtrunA17_Chr4g0002831 33.766 154 87 5 169 315 45 190 1.32e-16 77.0
Msa0604200 MtrunA17_Chr7g0233441 34.848 132 74 2 190 315 57 182 2.84e-16 75.9
Msa0604200 MtrunA17_Chr8g0366751 29.940 167 86 2 158 293 443 609 1.44e-15 77.4
Msa0604200 MtrunA17_Chr4g0002851 36.508 126 72 2 190 315 65 182 2.02e-15 73.6
Msa0604200 MtrunA17_Chr1g0185621 31.944 144 76 3 167 290 475 616 4.50e-15 75.9
Msa0604200 MtrunA17_Chr7g0275821 30.818 159 93 3 163 315 244 391 1.64e-14 73.6
Msa0604200 MtrunA17_Chr8g0346151 28.108 185 97 6 112 266 214 392 2.06e-14 73.6
Msa0604200 MtrunA17_Chr5g0411341 29.609 179 77 5 152 293 474 640 4.31e-14 72.8
Msa0604200 MtrunA17_Chr8g0346161 29.814 161 100 3 139 286 263 423 3.67e-13 69.7
Msa0604200 MtrunA17_Chr8g0365711 26.012 173 105 4 157 310 234 402 9.05e-13 68.6
Msa0604200 MtrunA17_Chr3g0131691 27.811 169 102 2 155 303 286 454 1.14e-12 68.2
Msa0604200 MtrunA17_Chr7g0260841 36.082 97 52 1 134 220 312 408 2.48e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0604200 AT4G37850.2 43.889 180 80 7 147 308 128 304 2.16e-33 125
Msa0604200 AT4G37850.1 43.889 180 80 7 147 308 128 304 2.16e-33 125
Msa0604200 AT2G22750.3 33.631 336 158 14 8 308 4 309 4.26e-30 117
Msa0604200 AT2G22750.4 33.631 336 158 14 8 308 4 309 4.31e-30 117
Msa0604200 AT2G22760.2 40.476 168 85 4 156 309 108 274 5.62e-30 115
Msa0604200 AT2G22750.5 33.131 329 156 13 15 308 6 305 9.90e-30 115
Msa0604200 AT2G22760.1 39.881 168 86 4 156 309 108 274 2.94e-29 114
Msa0604200 AT2G22750.1 37.788 217 97 6 125 308 70 281 3.47e-29 114
Msa0604200 AT2G22750.2 37.788 217 97 6 125 308 70 281 3.92e-29 114
Msa0604200 AT2G22770.1 37.870 169 80 2 166 309 131 299 6.78e-25 102
Msa0604200 AT4G17880.1 33.175 211 109 8 110 291 350 557 2.76e-17 82.8
Msa0604200 AT5G46760.1 35.329 167 79 7 152 291 396 560 2.76e-17 82.8
Msa0604200 AT1G32640.1 32.468 154 77 3 159 288 434 584 1.25e-15 77.8
Msa0604200 AT2G46510.1 37.931 116 54 3 159 264 377 484 1.51e-14 74.7
Msa0604200 AT1G01260.1 29.114 158 87 3 157 306 420 560 3.34e-13 70.5
Msa0604200 AT1G01260.2 29.114 158 87 3 157 306 420 560 3.34e-13 70.5
Msa0604200 AT1G01260.3 29.114 158 87 3 157 306 420 560 3.34e-13 70.5
Msa0604200 AT4G09820.1 29.193 161 97 3 118 278 321 464 4.54e-13 70.1
Msa0604200 AT5G41315.3 27.322 183 95 4 158 305 437 616 9.45e-13 69.3
Msa0604200 AT5G41315.2 27.322 183 95 4 158 305 440 619 9.82e-13 69.3
Msa0604200 AT5G41315.1 27.322 183 95 4 158 305 432 611 1.00e-12 69.3
Msa0604200 AT4G16430.1 46.575 73 35 1 152 220 301 373 1.17e-12 68.6
Msa0604200 AT5G46830.1 54.839 62 24 1 163 220 335 396 4.30e-12 67.0
Msa0604200 AT3G26744.6 29.697 165 95 3 168 312 308 471 5.80e-11 63.5
Msa0604200 AT3G26744.1 29.487 156 90 2 168 303 308 463 9.71e-11 62.8
Msa0604200 AT3G26744.4 29.487 156 90 2 168 303 308 463 9.71e-11 62.8
Msa0604200 AT3G26744.2 29.487 156 90 2 168 303 308 463 9.71e-11 62.8

Find 50 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGTTCCTAACCTTAAAA+AGG 0.267726 4_2:+49538601 Msa0604200:CDS
CAGCAGCTGGTTATCTGATT+TGG 0.268145 4_2:+49537718 Msa0604200:CDS
TCAAGAACAAAACAAACAAT+TGG 0.334442 4_2:+49538199 Msa0604200:CDS
CAAGTGGAAGCAAGAGTGTT+AGG 0.334987 4_2:+49539753 Msa0604200:CDS
GGGGCTTCTAGTTAAAATTA+TGG 0.343764 4_2:+49539815 Msa0604200:CDS
GATGGTGATGGAGAAATATT+TGG 0.350142 4_2:-49538305 None:intergenic
CTGCAAGAGCAATGAAGCTT+TGG 0.357341 4_2:-49538577 None:intergenic
ATCAGTGTCTCCAACCGAAT+TGG 0.364748 4_2:+49538412 Msa0604200:CDS
CAAGAACAAAACAAACAATT+GGG 0.390107 4_2:+49538200 Msa0604200:CDS
TTGATGATACTTTCATTGCT+TGG 0.395476 4_2:-49537694 None:intergenic
TGCATATGCATGGTTTGGTC+GGG 0.398563 4_2:-49539671 None:intergenic
ATCGCTGCATATGCATGGTT+TGG 0.407010 4_2:-49539676 None:intergenic
ACTCTTGCTTCCACTTGAAA+TGG 0.409697 4_2:-49539747 None:intergenic
AGAAACCTCAAAAGGGTCAT+TGG 0.411401 4_2:+49538454 Msa0604200:CDS
AATAACAGTGTCTTACCCTT+TGG 0.416567 4_2:+49539870 Msa0604200:CDS
GCCCCTTGTGCTCCTTGCAT+TGG 0.417499 4_2:-49539797 None:intergenic
CATCTGCATCGAGAAAATTA+AGG 0.430085 4_2:-49538139 None:intergenic
CACTCAACAGAAACCTCAAA+AGG 0.444007 4_2:+49538446 Msa0604200:CDS
TAGGAAAACAAGTGTTGATT+CGG 0.449123 4_2:+49539772 Msa0604200:CDS
TGCAAGAGCAATGAAGCTTT+GGG 0.460124 4_2:-49538576 None:intergenic
AAAGAGGAGTTAGATGGTGA+TGG 0.464747 4_2:-49538317 None:intergenic
TGACTTGCTGAGATCATTTG+TGG 0.473303 4_2:-49538231 None:intergenic
GATAACATTGAAGGTGTTGT+TGG 0.475426 4_2:+49539720 Msa0604200:CDS
CTGCATATGCATGGTTTGGT+CGG 0.481187 4_2:-49539672 None:intergenic
AACTGAAAAGAGGAGTTAGA+TGG 0.496291 4_2:-49538323 None:intergenic
GCTGAGATCATTTGTGGAAG+TGG 0.497595 4_2:-49538225 None:intergenic
AGCAAAAGGCCTCGTGCTCA+TGG 0.502148 4_2:+49538509 Msa0604200:CDS
GGTAGCTACCTGAGCAATGA+TGG 0.511294 4_2:-49539913 None:intergenic
TTCTCGATGCAGATGTGGGA+GGG 0.534542 4_2:+49538147 Msa0604200:CDS
AAGGCCTCGTGCTCATGGTA+AGG 0.535577 4_2:+49538514 Msa0604200:CDS
TCATGTGAGGATAACATTGA+AGG 0.542969 4_2:+49539711 Msa0604200:CDS
CGACATTACCATCATTGCTC+AGG 0.544333 4_2:+49539905 Msa0604200:CDS
GTTGATTCGGTTCCAATGCA+AGG 0.545125 4_2:+49539785 Msa0604200:CDS
GTTCCAATGCAAGGAGCACA+AGG 0.563766 4_2:+49539794 Msa0604200:CDS
TCTTCATCGCTGCATATGCA+TGG 0.570607 4_2:-49539681 None:intergenic
AAGTATCATCAATCAGCAGC+TGG 0.573007 4_2:+49537705 Msa0604200:CDS
GCATATGCATGGTTTGGTCG+GGG 0.578376 4_2:-49539670 None:intergenic
TGGTATTTGAAACTGAAAAG+AGG 0.585974 4_2:-49538333 None:intergenic
ACTCAACAGAAACCTCAAAA+GGG 0.587077 4_2:+49538447 Msa0604200:CDS
GTCGAGTGTAGAATCTCCAA+AGG 0.590011 4_2:-49539886 None:intergenic
TCCAATGCAAGGAGCACAAG+GGG 0.595381 4_2:+49539796 Msa0604200:CDS
TTTCTCGATGCAGATGTGGG+AGG 0.606897 4_2:+49538146 Msa0604200:CDS
TGTTGGTTCACCATTTCAAG+TGG 0.611743 4_2:+49539737 Msa0604200:CDS
TCATGGTAAGGATCACATCA+TGG 0.611981 4_2:+49538526 Msa0604200:CDS
TCGAGTGTAGAATCTCCAAA+GGG 0.615421 4_2:-49539885 None:intergenic
CGAATACAATATATTTGCTG+AGG 0.624364 4_2:+49538109 Msa0604200:CDS
TGAAGATTCGTCATCATGTG+AGG 0.642706 4_2:+49539698 Msa0604200:CDS
TTCCAATGCAAGGAGCACAA+GGG 0.644827 4_2:+49539795 Msa0604200:CDS
AAGAACAAAACAAACAATTG+GGG 0.650416 4_2:+49538201 Msa0604200:CDS
TGATCCTTACCATGAGCACG+AGG 0.705697 4_2:-49538518 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTGC+AGG + chr4_2:49538079-49538098 Msa0604200:intron 10.0%
!!! TTTATATTTTGAAATATCAA+GGG + chr4_2:49538772-49538791 Msa0604200:intron 10.0%
!!! TTTATTATTTTTCTTTTAGA+TGG + chr4_2:49539569-49539588 Msa0604200:intron 10.0%
!!! TTTTTTTTTTTTTTTTTTGC+AGG + chr4_2:49538079-49538098 Msa0604200:intron 10.0%
!!! TTTATATTTTGAAATATCAA+GGG + chr4_2:49538772-49538791 Msa0604200:intron 10.0%
!!! TTTATTATTTTTCTTTTAGA+TGG + chr4_2:49539569-49539588 Msa0604200:intron 10.0%
!!! CTTACATTTAACTTAATTAA+TGG - chr4_2:49537822-49537841 None:intergenic 15.0%
!!! GTTTATATTTTGAAATATCA+AGG + chr4_2:49538771-49538790 Msa0604200:intron 15.0%
!!! ATATTTGAACATCTATTTTT+TGG + chr4_2:49538869-49538888 Msa0604200:intron 15.0%
!! TATGTATATTGTTTATATAG+AGG - chr4_2:49539399-49539418 None:intergenic 15.0%
!!! AGACAAATCAATTTTATTTA+AGG + chr4_2:49539511-49539530 Msa0604200:intron 15.0%
!!! CTTACATTTAACTTAATTAA+TGG - chr4_2:49537822-49537841 None:intergenic 15.0%
!!! GTTTATATTTTGAAATATCA+AGG + chr4_2:49538771-49538790 Msa0604200:intron 15.0%
!!! ATATTTGAACATCTATTTTT+TGG + chr4_2:49538869-49538888 Msa0604200:intron 15.0%
!! TATGTATATTGTTTATATAG+AGG - chr4_2:49539399-49539418 None:intergenic 15.0%
!!! AGACAAATCAATTTTATTTA+AGG + chr4_2:49539511-49539530 Msa0604200:intron 15.0%
!!! GTTTATTCTTATTTAAGGTT+AGG - chr4_2:49537905-49537924 None:intergenic 20.0%
!!! CCTATGTTTATTCTTATTTA+AGG - chr4_2:49537910-49537929 None:intergenic 20.0%
!! CCTTAAATAAGAATAAACAT+AGG + chr4_2:49537907-49537926 Msa0604200:intron 20.0%
!! AAAAAAATATCTTGAAGACT+TGG - chr4_2:49537974-49537993 None:intergenic 20.0%
!!! TTTTTTTTTTTTGCAGGAAA+TGG + chr4_2:49538085-49538104 Msa0604200:intron 20.0%
!!! TTACATAACATACCTTTTTA+AGG - chr4_2:49538616-49538635 None:intergenic 20.0%
!! TACATATGACATATATGAAT+TGG - chr4_2:49538716-49538735 None:intergenic 20.0%
!!! TTGATTTTGATTATCAAATG+TGG + chr4_2:49539100-49539119 Msa0604200:intron 20.0%
!! AAGAAGAAACAAAAATAAGA+AGG - chr4_2:49539188-49539207 None:intergenic 20.0%
!!! GTTTATTCTTATTTAAGGTT+AGG - chr4_2:49537905-49537924 None:intergenic 20.0%
!!! CCTATGTTTATTCTTATTTA+AGG - chr4_2:49537910-49537929 None:intergenic 20.0%
!! CCTTAAATAAGAATAAACAT+AGG + chr4_2:49537907-49537926 Msa0604200:intron 20.0%
!! AAAAAAATATCTTGAAGACT+TGG - chr4_2:49537974-49537993 None:intergenic 20.0%
!!! TTTTTTTTTTTTGCAGGAAA+TGG + chr4_2:49538085-49538104 Msa0604200:intron 20.0%
!!! TTACATAACATACCTTTTTA+AGG - chr4_2:49538616-49538635 None:intergenic 20.0%
!! TACATATGACATATATGAAT+TGG - chr4_2:49538716-49538735 None:intergenic 20.0%
!!! TTGATTTTGATTATCAAATG+TGG + chr4_2:49539100-49539119 Msa0604200:intron 20.0%
!! AAGAAGAAACAAAAATAAGA+AGG - chr4_2:49539188-49539207 None:intergenic 20.0%
!! GATTTGGTAAGAAAATCAAA+AGG + chr4_2:49537734-49537753 Msa0604200:intron 25.0%
! TAATCAACCATCTTTGAATT+TGG - chr4_2:49537783-49537802 None:intergenic 25.0%
!!! ATGCTATTTTACTCAATCAT+AGG + chr4_2:49537863-49537882 Msa0604200:intron 25.0%
! TTTCTTCAGACAATAATTGA+TGG + chr4_2:49537994-49538013 Msa0604200:intron 25.0%
! ATATTATTTGTCTCAACGTT+TGG + chr4_2:49538022-49538041 Msa0604200:intron 25.0%
! TCAAGAACAAAACAAACAAT+TGG + chr4_2:49538199-49538218 Msa0604200:CDS 25.0%
! CAAGAACAAAACAAACAATT+GGG + chr4_2:49538200-49538219 Msa0604200:CDS 25.0%
! AAGAACAAAACAAACAATTG+GGG + chr4_2:49538201-49538220 Msa0604200:CDS 25.0%
!! GTGATTCATATTTTCCAATT+CGG - chr4_2:49538429-49538448 None:intergenic 25.0%
!!! TAACATACCTTTTTAAGGTT+AGG - chr4_2:49538611-49538630 None:intergenic 25.0%
!! ATTCTAAGAGTTAGCTAATA+GGG - chr4_2:49538649-49538668 None:intergenic 25.0%
!!! GTGTTATTTGTACAACTATT+TGG - chr4_2:49539020-49539039 None:intergenic 25.0%
!!! ATTTTGATTATCAAATGTGG+CGG + chr4_2:49539103-49539122 Msa0604200:intron 25.0%
! CTTTGACATATAACTATATG+CGG + chr4_2:49539425-49539444 Msa0604200:intron 25.0%
!! GATTTGGTAAGAAAATCAAA+AGG + chr4_2:49537734-49537753 Msa0604200:intron 25.0%
! TAATCAACCATCTTTGAATT+TGG - chr4_2:49537783-49537802 None:intergenic 25.0%
!!! ATGCTATTTTACTCAATCAT+AGG + chr4_2:49537863-49537882 Msa0604200:intron 25.0%
! TTTCTTCAGACAATAATTGA+TGG + chr4_2:49537994-49538013 Msa0604200:intron 25.0%
! ATATTATTTGTCTCAACGTT+TGG + chr4_2:49538022-49538041 Msa0604200:intron 25.0%
! TCAAGAACAAAACAAACAAT+TGG + chr4_2:49538199-49538218 Msa0604200:CDS 25.0%
! CAAGAACAAAACAAACAATT+GGG + chr4_2:49538200-49538219 Msa0604200:CDS 25.0%
! AAGAACAAAACAAACAATTG+GGG + chr4_2:49538201-49538220 Msa0604200:CDS 25.0%
!! GTGATTCATATTTTCCAATT+CGG - chr4_2:49538429-49538448 None:intergenic 25.0%
!!! TAACATACCTTTTTAAGGTT+AGG - chr4_2:49538611-49538630 None:intergenic 25.0%
!! ATTCTAAGAGTTAGCTAATA+GGG - chr4_2:49538649-49538668 None:intergenic 25.0%
!!! GTGTTATTTGTACAACTATT+TGG - chr4_2:49539020-49539039 None:intergenic 25.0%
!!! ATTTTGATTATCAAATGTGG+CGG + chr4_2:49539103-49539122 Msa0604200:intron 25.0%
! CTTTGACATATAACTATATG+CGG + chr4_2:49539425-49539444 Msa0604200:intron 25.0%
! TTGATGATACTTTCATTGCT+TGG - chr4_2:49537697-49537716 None:intergenic 30.0%
ACCTTCTCAAATAGATTTGT+AGG + chr4_2:49537948-49537967 Msa0604200:intron 30.0%
! CGAATACAATATATTTGCTG+AGG + chr4_2:49538109-49538128 Msa0604200:CDS 30.0%
! TGGTATTTGAAACTGAAAAG+AGG - chr4_2:49538336-49538355 None:intergenic 30.0%
!!! ATTCTCTTTTGAGTTACTAG+GGG - chr4_2:49538384-49538403 None:intergenic 30.0%
!!! CATTCTCTTTTGAGTTACTA+GGG - chr4_2:49538385-49538404 None:intergenic 30.0%
!!! TCATTCTCTTTTGAGTTACT+AGG - chr4_2:49538386-49538405 None:intergenic 30.0%
! TTCATATTTTCCAATTCGGT+TGG - chr4_2:49538425-49538444 None:intergenic 30.0%
TCTTGTTCCTAACCTTAAAA+AGG + chr4_2:49538601-49538620 Msa0604200:CDS 30.0%
! GATTCTAAGAGTTAGCTAAT+AGG - chr4_2:49538650-49538669 None:intergenic 30.0%
ACTTTATCTCTTTATTGCAG+TGG + chr4_2:49538937-49538956 Msa0604200:intron 30.0%
!!! TTTTTTCCACAACTTCCAAA+CGG - chr4_2:49539647-49539666 None:intergenic 30.0%
!! TAGGAAAACAAGTGTTGATT+CGG + chr4_2:49539772-49539791 Msa0604200:CDS 30.0%
! TTGATGATACTTTCATTGCT+TGG - chr4_2:49537697-49537716 None:intergenic 30.0%
ACCTTCTCAAATAGATTTGT+AGG + chr4_2:49537948-49537967 Msa0604200:intron 30.0%
! CGAATACAATATATTTGCTG+AGG + chr4_2:49538109-49538128 Msa0604200:CDS 30.0%
! TGGTATTTGAAACTGAAAAG+AGG - chr4_2:49538336-49538355 None:intergenic 30.0%
!!! ATTCTCTTTTGAGTTACTAG+GGG - chr4_2:49538384-49538403 None:intergenic 30.0%
!!! CATTCTCTTTTGAGTTACTA+GGG - chr4_2:49538385-49538404 None:intergenic 30.0%
!!! TCATTCTCTTTTGAGTTACT+AGG - chr4_2:49538386-49538405 None:intergenic 30.0%
! TTCATATTTTCCAATTCGGT+TGG - chr4_2:49538425-49538444 None:intergenic 30.0%
TCTTGTTCCTAACCTTAAAA+AGG + chr4_2:49538601-49538620 Msa0604200:CDS 30.0%
! GATTCTAAGAGTTAGCTAAT+AGG - chr4_2:49538650-49538669 None:intergenic 30.0%
ACTTTATCTCTTTATTGCAG+TGG + chr4_2:49538937-49538956 Msa0604200:intron 30.0%
!!! TTTTTTCCACAACTTCCAAA+CGG - chr4_2:49539647-49539666 None:intergenic 30.0%
!! TAGGAAAACAAGTGTTGATT+CGG + chr4_2:49539772-49539791 Msa0604200:CDS 30.0%
CATCTTTGAATTTGGAAAGC+AGG - chr4_2:49537775-49537794 None:intergenic 35.0%
CTGCTTTCCAAATTCAAAGA+TGG + chr4_2:49537773-49537792 Msa0604200:intron 35.0%
TTACTCAATCATAGGTCTCA+AGG + chr4_2:49537871-49537890 Msa0604200:intron 35.0%
TACTCAATCATAGGTCTCAA+GGG + chr4_2:49537872-49537891 Msa0604200:intron 35.0%
GCCTACAAATCTATTTGAGA+AGG - chr4_2:49537952-49537971 None:intergenic 35.0%
CATCTGCATCGAGAAAATTA+AGG - chr4_2:49538142-49538161 None:intergenic 35.0%
! TAATTTTCTCGATGCAGATG+TGG + chr4_2:49538142-49538161 Msa0604200:CDS 35.0%
! AATTTTCTCGATGCAGATGT+GGG + chr4_2:49538143-49538162 Msa0604200:CDS 35.0%
!! GATGGTGATGGAGAAATATT+TGG - chr4_2:49538308-49538327 None:intergenic 35.0%
AACTGAAAAGAGGAGTTAGA+TGG - chr4_2:49538326-49538345 None:intergenic 35.0%
!!! TTCTCTTTTGAGTTACTAGG+GGG - chr4_2:49538383-49538402 None:intergenic 35.0%
ACTCAACAGAAACCTCAAAA+GGG + chr4_2:49538447-49538466 Msa0604200:CDS 35.0%
! ATTTTCCAATGACCCTTTTG+AGG - chr4_2:49538462-49538481 None:intergenic 35.0%
!!! CCTTTTGCTTTTTGAGGTTT+TGG - chr4_2:49538498-49538517 None:intergenic 35.0%
CCAAAACCTCAAAAAGCAAA+AGG + chr4_2:49538495-49538514 Msa0604200:CDS 35.0%
! GTGTAAAGCTTCAGTCATTT+TGG + chr4_2:49539052-49539071 Msa0604200:intron 35.0%
!! TAAAGCTTCAGTCATTTTGG+TGG + chr4_2:49539055-49539074 Msa0604200:intron 35.0%
CTAAAAAACTGAGTTCAAGC+AGG - chr4_2:49539142-49539161 None:intergenic 35.0%
GTTTCTTCTTTGTGCCTTAA+TGG + chr4_2:49539198-49539217 Msa0604200:intron 35.0%
!! TCTGAATTTTGTTTGTGCCT+AGG + chr4_2:49539236-49539255 Msa0604200:intron 35.0%
GAAAGAGCTTAAAAACCGTT+TGG + chr4_2:49539629-49539648 Msa0604200:CDS 35.0%
TAAAAACCGTTTGGAAGTTG+TGG + chr4_2:49539638-49539657 Msa0604200:CDS 35.0%
TCATGTGAGGATAACATTGA+AGG + chr4_2:49539711-49539730 Msa0604200:CDS 35.0%
!! GATAACATTGAAGGTGTTGT+TGG + chr4_2:49539720-49539739 Msa0604200:CDS 35.0%
! GGGGCTTCTAGTTAAAATTA+TGG + chr4_2:49539815-49539834 Msa0604200:CDS 35.0%
AATAACAGTGTCTTACCCTT+TGG + chr4_2:49539870-49539889 Msa0604200:CDS 35.0%
CATCTTTGAATTTGGAAAGC+AGG - chr4_2:49537775-49537794 None:intergenic 35.0%
CTGCTTTCCAAATTCAAAGA+TGG + chr4_2:49537773-49537792 Msa0604200:intron 35.0%
TTACTCAATCATAGGTCTCA+AGG + chr4_2:49537871-49537890 Msa0604200:intron 35.0%
TACTCAATCATAGGTCTCAA+GGG + chr4_2:49537872-49537891 Msa0604200:intron 35.0%
GCCTACAAATCTATTTGAGA+AGG - chr4_2:49537952-49537971 None:intergenic 35.0%
CATCTGCATCGAGAAAATTA+AGG - chr4_2:49538142-49538161 None:intergenic 35.0%
! TAATTTTCTCGATGCAGATG+TGG + chr4_2:49538142-49538161 Msa0604200:CDS 35.0%
! AATTTTCTCGATGCAGATGT+GGG + chr4_2:49538143-49538162 Msa0604200:CDS 35.0%
!! GATGGTGATGGAGAAATATT+TGG - chr4_2:49538308-49538327 None:intergenic 35.0%
AACTGAAAAGAGGAGTTAGA+TGG - chr4_2:49538326-49538345 None:intergenic 35.0%
!!! TTCTCTTTTGAGTTACTAGG+GGG - chr4_2:49538383-49538402 None:intergenic 35.0%
ACTCAACAGAAACCTCAAAA+GGG + chr4_2:49538447-49538466 Msa0604200:CDS 35.0%
! ATTTTCCAATGACCCTTTTG+AGG - chr4_2:49538462-49538481 None:intergenic 35.0%
!!! CCTTTTGCTTTTTGAGGTTT+TGG - chr4_2:49538498-49538517 None:intergenic 35.0%
CCAAAACCTCAAAAAGCAAA+AGG + chr4_2:49538495-49538514 Msa0604200:CDS 35.0%
! GTGTAAAGCTTCAGTCATTT+TGG + chr4_2:49539052-49539071 Msa0604200:intron 35.0%
!! TAAAGCTTCAGTCATTTTGG+TGG + chr4_2:49539055-49539074 Msa0604200:intron 35.0%
CTAAAAAACTGAGTTCAAGC+AGG - chr4_2:49539142-49539161 None:intergenic 35.0%
GTTTCTTCTTTGTGCCTTAA+TGG + chr4_2:49539198-49539217 Msa0604200:intron 35.0%
!! TCTGAATTTTGTTTGTGCCT+AGG + chr4_2:49539236-49539255 Msa0604200:intron 35.0%
GAAAGAGCTTAAAAACCGTT+TGG + chr4_2:49539629-49539648 Msa0604200:CDS 35.0%
TAAAAACCGTTTGGAAGTTG+TGG + chr4_2:49539638-49539657 Msa0604200:CDS 35.0%
TCATGTGAGGATAACATTGA+AGG + chr4_2:49539711-49539730 Msa0604200:CDS 35.0%
!! GATAACATTGAAGGTGTTGT+TGG + chr4_2:49539720-49539739 Msa0604200:CDS 35.0%
! GGGGCTTCTAGTTAAAATTA+TGG + chr4_2:49539815-49539834 Msa0604200:CDS 35.0%
AATAACAGTGTCTTACCCTT+TGG + chr4_2:49539870-49539889 Msa0604200:CDS 35.0%
AAGTATCATCAATCAGCAGC+TGG + chr4_2:49537705-49537724 Msa0604200:CDS 40.0%
!! TGACTTGCTGAGATCATTTG+TGG - chr4_2:49538234-49538253 None:intergenic 40.0%
AAAGAGGAGTTAGATGGTGA+TGG - chr4_2:49538320-49538339 None:intergenic 40.0%
AGTTACTAGGGGGTGAATTT+GGG - chr4_2:49538373-49538392 None:intergenic 40.0%
CACTCAACAGAAACCTCAAA+AGG + chr4_2:49538446-49538465 Msa0604200:CDS 40.0%
AGAAACCTCAAAAGGGTCAT+TGG + chr4_2:49538454-49538473 Msa0604200:CDS 40.0%
TCATGGTAAGGATCACATCA+TGG + chr4_2:49538526-49538545 Msa0604200:CDS 40.0%
TGCAAGAGCAATGAAGCTTT+GGG - chr4_2:49538579-49538598 None:intergenic 40.0%
TTGATTATCAAATGTGGCGG+CGG + chr4_2:49539106-49539125 Msa0604200:intron 40.0%
ACTGAGTTCAAGCAGGTTAA+AGG - chr4_2:49539135-49539154 None:intergenic 40.0%
AATCCTGTACAACGCCATTA+AGG - chr4_2:49539215-49539234 None:intergenic 40.0%
TGAAGATTCGTCATCATGTG+AGG + chr4_2:49539698-49539717 Msa0604200:CDS 40.0%
!! TGTTGGTTCACCATTTCAAG+TGG + chr4_2:49539737-49539756 Msa0604200:CDS 40.0%
ACTCTTGCTTCCACTTGAAA+TGG - chr4_2:49539750-49539769 None:intergenic 40.0%
TCGAGTGTAGAATCTCCAAA+GGG - chr4_2:49539888-49539907 None:intergenic 40.0%
AAGTATCATCAATCAGCAGC+TGG + chr4_2:49537705-49537724 Msa0604200:CDS 40.0%
!! TGACTTGCTGAGATCATTTG+TGG - chr4_2:49538234-49538253 None:intergenic 40.0%
AAAGAGGAGTTAGATGGTGA+TGG - chr4_2:49538320-49538339 None:intergenic 40.0%
AGTTACTAGGGGGTGAATTT+GGG - chr4_2:49538373-49538392 None:intergenic 40.0%
CACTCAACAGAAACCTCAAA+AGG + chr4_2:49538446-49538465 Msa0604200:CDS 40.0%
AGAAACCTCAAAAGGGTCAT+TGG + chr4_2:49538454-49538473 Msa0604200:CDS 40.0%
TCATGGTAAGGATCACATCA+TGG + chr4_2:49538526-49538545 Msa0604200:CDS 40.0%
TGCAAGAGCAATGAAGCTTT+GGG - chr4_2:49538579-49538598 None:intergenic 40.0%
TTGATTATCAAATGTGGCGG+CGG + chr4_2:49539106-49539125 Msa0604200:intron 40.0%
ACTGAGTTCAAGCAGGTTAA+AGG - chr4_2:49539135-49539154 None:intergenic 40.0%
AATCCTGTACAACGCCATTA+AGG - chr4_2:49539215-49539234 None:intergenic 40.0%
TGAAGATTCGTCATCATGTG+AGG + chr4_2:49539698-49539717 Msa0604200:CDS 40.0%
!! TGTTGGTTCACCATTTCAAG+TGG + chr4_2:49539737-49539756 Msa0604200:CDS 40.0%
ACTCTTGCTTCCACTTGAAA+TGG - chr4_2:49539750-49539769 None:intergenic 40.0%
TCGAGTGTAGAATCTCCAAA+GGG - chr4_2:49539888-49539907 None:intergenic 40.0%
CAGCAGCTGGTTATCTGATT+TGG + chr4_2:49537718-49537737 Msa0604200:CDS 45.0%
GCTGAGATCATTTGTGGAAG+TGG - chr4_2:49538228-49538247 None:intergenic 45.0%
TTTGGGGGGTTGTCAAAAGA+TGG - chr4_2:49538356-49538375 None:intergenic 45.0%
TTACTAGGGGGTGAATTTGG+GGG - chr4_2:49538371-49538390 None:intergenic 45.0%
GTTACTAGGGGGTGAATTTG+GGG - chr4_2:49538372-49538391 None:intergenic 45.0%
GAGTTACTAGGGGGTGAATT+TGG - chr4_2:49538374-49538393 None:intergenic 45.0%
ATCAGTGTCTCCAACCGAAT+TGG + chr4_2:49538412-49538431 Msa0604200:CDS 45.0%
!!! ACGAGGCCTTTTGCTTTTTG+AGG - chr4_2:49538504-49538523 None:intergenic 45.0%
CTGCAAGAGCAATGAAGCTT+TGG - chr4_2:49538580-49538599 None:intergenic 45.0%
! TTGTTTGTGCCTAGGCGTTT+TGG + chr4_2:49539244-49539263 Msa0604200:intron 45.0%
CCTCTAAACGCTTTAGCACA+AGG - chr4_2:49539274-49539293 None:intergenic 45.0%
! CCTTGTGCTAAAGCGTTTAG+AGG + chr4_2:49539271-49539290 Msa0604200:intron 45.0%
!! TGCATATGCATGGTTTGGTC+GGG - chr4_2:49539674-49539693 None:intergenic 45.0%
!! CTGCATATGCATGGTTTGGT+CGG - chr4_2:49539675-49539694 None:intergenic 45.0%
ATCGCTGCATATGCATGGTT+TGG - chr4_2:49539679-49539698 None:intergenic 45.0%
TCTTCATCGCTGCATATGCA+TGG - chr4_2:49539684-49539703 None:intergenic 45.0%
!! CAAGTGGAAGCAAGAGTGTT+AGG + chr4_2:49539753-49539772 Msa0604200:CDS 45.0%
!! GTTGATTCGGTTCCAATGCA+AGG + chr4_2:49539785-49539804 Msa0604200:CDS 45.0%
! TTCCAATGCAAGGAGCACAA+GGG + chr4_2:49539795-49539814 Msa0604200:CDS 45.0%
GTCGAGTGTAGAATCTCCAA+AGG - chr4_2:49539889-49539908 None:intergenic 45.0%
CGACATTACCATCATTGCTC+AGG + chr4_2:49539905-49539924 Msa0604200:CDS 45.0%
CAGCAGCTGGTTATCTGATT+TGG + chr4_2:49537718-49537737 Msa0604200:CDS 45.0%
GCTGAGATCATTTGTGGAAG+TGG - chr4_2:49538228-49538247 None:intergenic 45.0%
TTTGGGGGGTTGTCAAAAGA+TGG - chr4_2:49538356-49538375 None:intergenic 45.0%
TTACTAGGGGGTGAATTTGG+GGG - chr4_2:49538371-49538390 None:intergenic 45.0%
GTTACTAGGGGGTGAATTTG+GGG - chr4_2:49538372-49538391 None:intergenic 45.0%
GAGTTACTAGGGGGTGAATT+TGG - chr4_2:49538374-49538393 None:intergenic 45.0%
ATCAGTGTCTCCAACCGAAT+TGG + chr4_2:49538412-49538431 Msa0604200:CDS 45.0%
!!! ACGAGGCCTTTTGCTTTTTG+AGG - chr4_2:49538504-49538523 None:intergenic 45.0%
CTGCAAGAGCAATGAAGCTT+TGG - chr4_2:49538580-49538599 None:intergenic 45.0%
! TTGTTTGTGCCTAGGCGTTT+TGG + chr4_2:49539244-49539263 Msa0604200:intron 45.0%
CCTCTAAACGCTTTAGCACA+AGG - chr4_2:49539274-49539293 None:intergenic 45.0%
! CCTTGTGCTAAAGCGTTTAG+AGG + chr4_2:49539271-49539290 Msa0604200:intron 45.0%
!! TGCATATGCATGGTTTGGTC+GGG - chr4_2:49539674-49539693 None:intergenic 45.0%
!! CTGCATATGCATGGTTTGGT+CGG - chr4_2:49539675-49539694 None:intergenic 45.0%
ATCGCTGCATATGCATGGTT+TGG - chr4_2:49539679-49539698 None:intergenic 45.0%
TCTTCATCGCTGCATATGCA+TGG - chr4_2:49539684-49539703 None:intergenic 45.0%
!! CAAGTGGAAGCAAGAGTGTT+AGG + chr4_2:49539753-49539772 Msa0604200:CDS 45.0%
!! GTTGATTCGGTTCCAATGCA+AGG + chr4_2:49539785-49539804 Msa0604200:CDS 45.0%
! TTCCAATGCAAGGAGCACAA+GGG + chr4_2:49539795-49539814 Msa0604200:CDS 45.0%
GTCGAGTGTAGAATCTCCAA+AGG - chr4_2:49539889-49539908 None:intergenic 45.0%
CGACATTACCATCATTGCTC+AGG + chr4_2:49539905-49539924 Msa0604200:CDS 45.0%
!!! TTATTTTTTTTTGTAAATTA+TGG + chr4_2:49538975-49538994 Msa0604200:intron 5.0%
!!! TATATATATATATATCATTT+TGG + chr4_2:49539348-49539367 Msa0604200:intron 5.0%
!!! TTATTTTTTTTTGTAAATTA+TGG + chr4_2:49538975-49538994 Msa0604200:intron 5.0%
!!! TATATATATATATATCATTT+TGG + chr4_2:49539348-49539367 Msa0604200:intron 5.0%
TTTCTCGATGCAGATGTGGG+AGG + chr4_2:49538146-49538165 Msa0604200:CDS 50.0%
TTCTCGATGCAGATGTGGGA+GGG + chr4_2:49538147-49538166 Msa0604200:CDS 50.0%
TACTAGGGGGTGAATTTGGG+GGG - chr4_2:49538370-49538389 None:intergenic 50.0%
TGATCCTTACCATGAGCACG+AGG - chr4_2:49538521-49538540 None:intergenic 50.0%
GTGCCTTAATGGCGTTGTAC+AGG + chr4_2:49539209-49539228 Msa0604200:intron 50.0%
!! GCATATGCATGGTTTGGTCG+GGG - chr4_2:49539673-49539692 None:intergenic 50.0%
! GTTCCAATGCAAGGAGCACA+AGG + chr4_2:49539794-49539813 Msa0604200:CDS 50.0%
! TCCAATGCAAGGAGCACAAG+GGG + chr4_2:49539796-49539815 Msa0604200:CDS 50.0%
GGTAGCTACCTGAGCAATGA+TGG - chr4_2:49539916-49539935 None:intergenic 50.0%
TTTCTCGATGCAGATGTGGG+AGG + chr4_2:49538146-49538165 Msa0604200:CDS 50.0%
TTCTCGATGCAGATGTGGGA+GGG + chr4_2:49538147-49538166 Msa0604200:CDS 50.0%
TACTAGGGGGTGAATTTGGG+GGG - chr4_2:49538370-49538389 None:intergenic 50.0%
TGATCCTTACCATGAGCACG+AGG - chr4_2:49538521-49538540 None:intergenic 50.0%
GTGCCTTAATGGCGTTGTAC+AGG + chr4_2:49539209-49539228 Msa0604200:intron 50.0%
!! GCATATGCATGGTTTGGTCG+GGG - chr4_2:49539673-49539692 None:intergenic 50.0%
! GTTCCAATGCAAGGAGCACA+AGG + chr4_2:49539794-49539813 Msa0604200:CDS 50.0%
! TCCAATGCAAGGAGCACAAG+GGG + chr4_2:49539796-49539815 Msa0604200:CDS 50.0%
GGTAGCTACCTGAGCAATGA+TGG - chr4_2:49539916-49539935 None:intergenic 50.0%
AGCAAAAGGCCTCGTGCTCA+TGG + chr4_2:49538509-49538528 Msa0604200:CDS 55.0%
AAGGCCTCGTGCTCATGGTA+AGG + chr4_2:49538514-49538533 Msa0604200:CDS 55.0%
!! CAAGGAGTGCCAAAACGCCT+AGG - chr4_2:49539256-49539275 None:intergenic 55.0%
AGCAAAAGGCCTCGTGCTCA+TGG + chr4_2:49538509-49538528 Msa0604200:CDS 55.0%
AAGGCCTCGTGCTCATGGTA+AGG + chr4_2:49538514-49538533 Msa0604200:CDS 55.0%
!! CAAGGAGTGCCAAAACGCCT+AGG - chr4_2:49539256-49539275 None:intergenic 55.0%
GCCCCTTGTGCTCCTTGCAT+TGG - chr4_2:49539800-49539819 None:intergenic 60.0%
GCCCCTTGTGCTCCTTGCAT+TGG - chr4_2:49539800-49539819 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 49537677 49539953 49537677 ID=Msa0604200;Name=Msa0604200
chr4_2 mRNA 49537677 49539953 49537677 ID=Msa0604200-mRNA-1;Parent=Msa0604200;Name=Msa0604200-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|3|0|316
chr4_2 exon 49537677 49537739 49537677 ID=Msa0604200-mRNA-1:exon:11460;Parent=Msa0604200-mRNA-1
chr4_2 exon 49538101 49538622 49538101 ID=Msa0604200-mRNA-1:exon:11461;Parent=Msa0604200-mRNA-1
chr4_2 exon 49539588 49539953 49539588 ID=Msa0604200-mRNA-1:exon:11462;Parent=Msa0604200-mRNA-1
chr4_2 CDS 49537677 49537739 49537677 ID=Msa0604200-mRNA-1:cds;Parent=Msa0604200-mRNA-1
chr4_2 CDS 49538101 49538622 49538101 ID=Msa0604200-mRNA-1:cds;Parent=Msa0604200-mRNA-1
chr4_2 CDS 49539588 49539953 49539588 ID=Msa0604200-mRNA-1:cds;Parent=Msa0604200-mRNA-1
Gene Sequence

>Msa0604200

ATGGAGGAAATCAACAACCAAGCAATGAAAGTATCATCAATCAGCAGCTGGTTATCTGATTTGGAAATGGACGAATACAATATATTTGCTGAGGAATGCAACCTTAATTTTCTCGATGCAGATGTGGGAGGGTTTCTTTCAGATGACATAGCTAATGTATTTCAAGAACAAAACAAACAATTGGGGTCCACTTCCACAAATGATCTCAGCAAGTCATTCATTCACGAAACAATTGATAATAGTGACAAAATCAATGAATCACTTTCACCAAATATTTCTCCATCACCATCTAACTCCTCTTTTCAGTTTCAAATACCATCTTTTGACAACCCCCCAAATTCACCCCCTAGTAACTCAAAAGAGAATGAAACAATATCAGTGTCTCCAACCGAATTGGAAAATATGAATCACTCAACAGAAACCTCAAAAGGGTCATTGGAAAATGAAAAGTTTGAAGCCAAAACCTCAAAAAGCAAAAGGCCTCGTGCTCATGGTAAGGATCACATCATGGCTGAGAGAAATCGTAGAGAGAAACTCACCCAAAGCTTCATTGCTCTTGCAGCTCTTGTTCCTAACCTTAAAAAGATGGACAAGTTATCTGTACTAATTGACACTATCAAATACTTGAAAGAGCTTAAAAACCGTTTGGAAGTTGTGGAAAAAAAGTCCCCGACCAAACCATGCATATGCAGCGATGAAGATTCGTCATCATGTGAGGATAACATTGAAGGTGTTGTTGGTTCACCATTTCAAGTGGAAGCAAGAGTGTTAGGAAAACAAGTGTTGATTCGGTTCCAATGCAAGGAGCACAAGGGGCTTCTAGTTAAAATTATGGTCGAAATTCAAAAATTTCAACTATTTGTTGTCAATAACAGTGTCTTACCCTTTGGAGATTCTACACTCGACATTACCATCATTGCTCAGGTAGCTACCTATCACAATTTTTTTTAA

Protein sequence

>Msa0604200

MEEINNQAMKVSSISSWLSDLEMDEYNIFAEECNLNFLDADVGGFLSDDIANVFQEQNKQLGSTSTNDLSKSFIHETIDNSDKINESLSPNISPSPSNSSFQFQIPSFDNPPNSPPSNSKENETISVSPTELENMNHSTETSKGSLENEKFEAKTSKSKRPRAHGKDHIMAERNRREKLTQSFIALAALVPNLKKMDKLSVLIDTIKYLKELKNRLEVVEKKSPTKPCICSDEDSSSCEDNIEGVVGSPFQVEARVLGKQVLIRFQCKEHKGLLVKIMVEIQKFQLFVVNNSVLPFGDSTLDITIIAQVATYHNFF*