Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618310 | XP_003629922.1 | 98.374 | 123 | 2 | 0 | 3 | 125 | 5 | 127 | 3.36e-82 | 246 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618310 | sp|Q5M853|KXDL1_RAT | 33.663 | 101 | 64 | 1 | 14 | 111 | 7 | 107 | 4.57e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618310 | G7L841 | 98.374 | 123 | 2 | 0 | 3 | 125 | 5 | 127 | 1.60e-82 | 246 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0074320 | Msa0618310 | 0.819518 | 1.113904e-52 | -8.615850e-47 |
| Msa0076040 | Msa0618310 | 0.814052 | 1.875225e-51 | -8.615850e-47 |
| Msa0082280 | Msa0618310 | 0.803753 | 2.999318e-49 | -8.615850e-47 |
| Msa0100800 | Msa0618310 | 0.816168 | 6.355409e-52 | -8.615850e-47 |
| Msa0618310 | Msa0619860 | 0.804865 | 1.759464e-49 | -8.615850e-47 |
| Msa0618310 | Msa0620990 | 0.811810 | 5.811428e-51 | -8.615850e-47 |
| Msa0618310 | Msa0631250 | 0.802777 | 4.776517e-49 | -8.615850e-47 |
| Msa0618310 | Msa0657790 | 0.949669 | 7.959216e-108 | -8.615850e-47 |
| Msa0618310 | Msa0659030 | 0.837898 | 3.960837e-57 | -8.615850e-47 |
| Msa0618310 | Msa0687630 | 0.806593 | 7.629194e-50 | -8.615850e-47 |
| Msa0618310 | Msa0702100 | 0.949181 | 2.138406e-107 | -8.615850e-47 |
| Msa0618310 | Msa0703230 | 0.800779 | 1.227826e-48 | -8.615850e-47 |
| Msa0618310 | Msa0705000 | 0.847212 | 1.333956e-59 | -8.615850e-47 |
| Msa0618310 | Msa0705040 | 0.843214 | 1.607574e-58 | -8.615850e-47 |
| Msa0618310 | Msa0707390 | 0.812582 | 3.943221e-51 | -8.615850e-47 |
| Msa0618310 | Msa0709780 | 0.807180 | 5.733040e-50 | -8.615850e-47 |
| Msa0618310 | Msa0750920 | 0.822302 | 2.548097e-53 | -8.615850e-47 |
| Msa0618310 | Msa0785130 | 0.802783 | 4.762238e-49 | -8.615850e-47 |
| Msa0618310 | Msa0819540 | 0.847097 | 1.434052e-59 | -8.615850e-47 |
| Msa0618310 | Msa0864010 | 0.800338 | 1.510209e-48 | -8.615850e-47 |
| Msa0618310 | Msa0943170 | 0.816002 | 6.923105e-52 | -8.615850e-47 |
| Msa0618310 | Msa0960830 | 0.832898 | 7.269036e-56 | -8.615850e-47 |
| Msa0618310 | Msa0963020 | 0.808325 | 3.273683e-50 | -8.615850e-47 |
| Msa0618310 | Msa0966270 | 0.812322 | 4.493092e-51 | -8.615850e-47 |
| Msa0618310 | Msa0994290 | 0.801235 | 9.909725e-49 | -8.615850e-47 |
| Msa0618310 | Msa1019240 | 0.813731 | 2.206944e-51 | -8.615850e-47 |
| Msa0618310 | Msa1019260 | 0.805315 | 1.416780e-49 | -8.615850e-47 |
| Msa0618310 | Msa1025940 | 0.808964 | 2.390784e-50 | -8.615850e-47 |
| Msa0618310 | Msa1030930 | 0.819736 | 9.932919e-53 | -8.615850e-47 |
| Msa0618310 | Msa1036550 | 0.804880 | 1.746715e-49 | -8.615850e-47 |
| Msa0618310 | Msa1070050 | 0.807093 | 5.982362e-50 | -8.615850e-47 |
| Msa0618310 | Msa1082700 | 0.812425 | 4.268383e-51 | -8.615850e-47 |
| Msa0618310 | Msa1083750 | 0.801886 | 7.285892e-49 | -8.615850e-47 |
| Msa0618310 | Msa1126510 | 0.802216 | 6.232132e-49 | -8.615850e-47 |
| Msa0618310 | Msa1126770 | 0.818479 | 1.918439e-52 | -8.615850e-47 |
| Msa0618310 | Msa1128660 | 0.802507 | 5.428931e-49 | -8.615850e-47 |
| Msa0618310 | Msa1131170 | 0.836378 | 9.693740e-57 | -8.615850e-47 |
| Msa0618310 | Msa1166870 | 0.827604 | 1.427469e-54 | -8.615850e-47 |
| Msa0618310 | Msa1184370 | 0.832557 | 8.830570e-56 | -8.615850e-47 |
| Msa0618310 | Msa1201830 | 0.803095 | 4.104373e-49 | -8.615850e-47 |
| Msa0618310 | Msa1227690 | 0.834465 | 2.951514e-56 | -8.615850e-47 |
| Msa0618310 | Msa1254710 | 0.806074 | 9.815249e-50 | -8.615850e-47 |
| Msa0618310 | Msa1256770 | 0.801998 | 6.910922e-49 | -8.615850e-47 |
| Msa0618310 | Msa1276930 | 0.829842 | 4.105605e-55 | -8.615850e-47 |
| Msa0618310 | Msa1286510 | 0.812370 | 4.386168e-51 | -8.615850e-47 |
| Msa0618310 | Msa1294840 | 0.800389 | 1.474928e-48 | -8.615850e-47 |
| Msa0618310 | Msa1307950 | 0.808637 | 2.808206e-50 | -8.615850e-47 |
| Msa0618310 | Msa1310690 | 0.826510 | 2.608317e-54 | -8.615850e-47 |
| Msa0618310 | Msa1315100 | 0.800779 | 1.227808e-48 | -8.615850e-47 |
| Msa0618310 | Msa1329540 | 0.805617 | 1.224387e-49 | -8.615850e-47 |
| Msa0618310 | Msa1335940 | 0.806224 | 9.125936e-50 | -8.615850e-47 |
| Msa0618310 | Msa1345450 | 0.810566 | 1.081298e-50 | -8.615850e-47 |
| Msa0618310 | Msa1349570 | 0.814593 | 1.423376e-51 | -8.615850e-47 |
| Msa0618310 | Msa1363330 | 0.822052 | 2.911095e-53 | -8.615850e-47 |
| Msa0618310 | Msa1363860 | 0.845893 | 3.055856e-59 | -8.615850e-47 |
| Msa0618310 | Msa1365150 | 0.802753 | 4.830923e-49 | -8.615850e-47 |
| Msa0618310 | Msa1369190 | 0.818650 | 1.754528e-52 | -8.615850e-47 |
| Msa0618310 | Msa1370860 | 0.817241 | 3.652327e-52 | -8.615850e-47 |
| Msa0618310 | Msa1386600 | 0.821517 | 3.871721e-53 | -8.615850e-47 |
| Msa0618310 | Msa1438640 | 0.824240 | 8.985493e-54 | -8.615850e-47 |
| Msa0618310 | Msa1442850 | 0.863401 | 2.556514e-64 | -8.615850e-47 |
| Msa0618310 | Msa1462860 | 0.830920 | 2.237317e-55 | -8.615850e-47 |
| Msa0618310 | Msa1465080 | 0.833004 | 6.841854e-56 | -8.615850e-47 |
| Msa0167480 | Msa0618310 | 0.800458 | 1.427778e-48 | -8.615850e-47 |
| Msa0171850 | Msa0618310 | 0.803341 | 3.651148e-49 | -8.615850e-47 |
| Msa0174770 | Msa0618310 | 0.823799 | 1.140161e-53 | -8.615850e-47 |
| Msa0181610 | Msa0618310 | 0.824937 | 6.155476e-54 | -8.615850e-47 |
| Msa0185350 | Msa0618310 | 0.806124 | 9.577137e-50 | -8.615850e-47 |
| Msa0186890 | Msa0618310 | 0.802603 | 5.186801e-49 | -8.615850e-47 |
| Msa0187690 | Msa0618310 | 0.820660 | 6.098782e-53 | -8.615850e-47 |
| Msa0194540 | Msa0618310 | 0.802663 | 5.040746e-49 | -8.615850e-47 |
| Msa0221480 | Msa0618310 | 0.803029 | 4.237092e-49 | -8.615850e-47 |
| Msa0226460 | Msa0618310 | 0.807976 | 3.885571e-50 | -8.615850e-47 |
| Msa0394400 | Msa0618310 | 0.812773 | 3.581119e-51 | -8.615850e-47 |
| Msa0402330 | Msa0618310 | 0.812675 | 3.762389e-51 | -8.615850e-47 |
| Msa0416400 | Msa0618310 | 0.807584 | 4.706043e-50 | -8.615850e-47 |
| Msa0443390 | Msa0618310 | 0.803262 | 3.791933e-49 | -8.615850e-47 |
| Msa0481480 | Msa0618310 | 0.804403 | 2.197042e-49 | -8.615850e-47 |
| Msa0291520 | Msa0618310 | 0.841656 | 4.162078e-58 | -8.615850e-47 |
| Msa0321190 | Msa0618310 | 0.800345 | 1.505110e-48 | -8.615850e-47 |
| Msa0355270 | Msa0618310 | 0.804657 | 1.944371e-49 | -8.615850e-47 |
| Msa0505150 | Msa0618310 | 0.814143 | 1.789670e-51 | -8.615850e-47 |
| Msa0508630 | Msa0618310 | 0.811026 | 8.598595e-51 | -8.615850e-47 |
| Msa0526540 | Msa0618310 | 0.827769 | 1.302811e-54 | -8.615850e-47 |
| Msa0576940 | Msa0618310 | 0.828996 | 6.589874e-55 | -8.615850e-47 |
| Msa0581070 | Msa0618310 | 0.833907 | 4.072300e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618310 | MtrunA17_Chr8g0380411 | 98.374 | 123 | 2 | 0 | 3 | 125 | 5 | 127 | 2.98e-84 | 244 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618310 | AT3G29130.1 | 64.103 | 117 | 42 | 0 | 9 | 125 | 3 | 119 | 4.01e-55 | 168 |
| Msa0618310 | AT3G29130.6 | 64.103 | 117 | 42 | 0 | 9 | 125 | 3 | 119 | 4.01e-55 | 168 |
| Msa0618310 | AT3G29130.5 | 64.103 | 117 | 42 | 0 | 9 | 125 | 3 | 119 | 4.01e-55 | 168 |
| Msa0618310 | AT3G29130.2 | 64.103 | 117 | 42 | 0 | 9 | 125 | 52 | 168 | 1.05e-54 | 169 |
| Msa0618310 | AT3G29130.4 | 65.000 | 80 | 28 | 0 | 46 | 125 | 12 | 91 | 9.97e-37 | 120 |
| Msa0618310 | AT3G29130.3 | 65.000 | 80 | 28 | 0 | 46 | 125 | 12 | 91 | 9.97e-37 | 120 |
Find 33 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACATAGTGTGTTGTAAA+TGG | 0.303412 | 4_2:+69222221 | None:intergenic |
| TGGATAAGTTGTTGAAAGTT+TGG | 0.311208 | 4_2:+69220311 | None:intergenic |
| AATAGAAGACATGTTATTTC+AGG | 0.314826 | 4_2:-69219972 | Msa0618310:three_prime_UTR |
| GAATCAGAATCGATGAAATT+AGG | 0.315765 | 4_2:-69222307 | Msa0618310:CDS |
| CTTGAAATGCCTAAGTTATA+TGG | 0.324858 | 4_2:-69220166 | Msa0618310:three_prime_UTR |
| GAAGTTCAGGGGCAAGAAAT+TGG | 0.328764 | 4_2:+69220022 | None:intergenic |
| ACTTGTTAGCAATGAAGTTC+AGG | 0.339437 | 4_2:+69220009 | None:intergenic |
| TAGTGTGTTGTAAATGGTTA+AGG | 0.342554 | 4_2:+69222227 | None:intergenic |
| TTTCAGATTGGGAAGGTTGC+AGG | 0.354404 | 4_2:-69222104 | Msa0618310:intron |
| TACTTAGGCATTTCAAGATC+CGG | 0.393355 | 4_2:+69220243 | None:intergenic |
| TAGCCATGTCAGGAGAAATC+TGG | 0.395052 | 4_2:+69222029 | None:intergenic |
| TTCTTCATTTCTTGTCCAAA+AGG | 0.409409 | 4_2:-69220076 | Msa0618310:three_prime_UTR |
| TCAATAATTCATTATAACTA+AGG | 0.414895 | 4_2:+69220119 | None:intergenic |
| AACTTAGGCATTTCAAGATC+CGG | 0.422372 | 4_2:+69220172 | None:intergenic |
| ACGTTACTCATAGAATCTTC+AGG | 0.435689 | 4_2:+69220279 | None:intergenic |
| GAATCTTCAGGAAATGCATC+TGG | 0.446985 | 4_2:+69220291 | None:intergenic |
| GTTATTCGAACGTGTTTGAC+AGG | 0.458228 | 4_2:-69220198 | Msa0618310:three_prime_UTR |
| GATAACAGCAATAGTTACTT+AGG | 0.475331 | 4_2:+69220228 | None:intergenic |
| AGTGTGTTGTAAATGGTTAA+GGG | 0.496258 | 4_2:+69222228 | None:intergenic |
| CGTGTGTTTCTAGCCATGTC+AGG | 0.515825 | 4_2:+69222019 | None:intergenic |
| CTTGTTAGCAATGAAGTTCA+GGG | 0.517721 | 4_2:+69220010 | None:intergenic |
| GAACGTGTTTGACAGGAGAC+CGG | 0.536487 | 4_2:-69220191 | Msa0618310:three_prime_UTR |
| CTATGAGTAACGTTATTGAC+AGG | 0.539299 | 4_2:-69220269 | Msa0618310:CDS |
| TACCCAGATTTCTCCTGACA+TGG | 0.542515 | 4_2:-69222032 | Msa0618310:CDS |
| TAAACACGTCCATATAACTT+AGG | 0.553646 | 4_2:+69220157 | None:intergenic |
| AGCCATGTCAGGAGAAATCT+GGG | 0.559247 | 4_2:+69222030 | None:intergenic |
| AGAAATGAAGAAAACAATGC+AGG | 0.559601 | 4_2:+69220087 | None:intergenic |
| AAAACGGTTTCATTTGGTCA+CGG | 0.573588 | 4_2:-69222356 | Msa0618310:five_prime_UTR |
| AGAAGACATGTTATTTCAGG+AGG | 0.574015 | 4_2:-69219969 | Msa0618310:three_prime_UTR |
| TAACGTTATTGACAGGAGAC+CGG | 0.586364 | 4_2:-69220262 | Msa0618310:CDS |
| AATTGAATTTCAGATTGGGA+AGG | 0.586674 | 4_2:-69222111 | Msa0618310:intron |
| GTTAAGGGAACGAAGATCAT+CGG | 0.608518 | 4_2:+69222243 | None:intergenic |
| TTGTTAGCAATGAAGTTCAG+GGG | 0.652292 | 4_2:+69220011 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATATTTTTCTTAAACTT+AGG | - | chr4_2:69220354-69220373 | Msa0618310:intron | 10.0% |
| !! | ATATCATCAAATTATATAAT+TGG | - | chr4_2:69220418-69220437 | Msa0618310:intron | 10.0% |
| !!! | TTATTGAAAATTCTTAATTT+TGG | - | chr4_2:69220848-69220867 | Msa0618310:intron | 10.0% |
| !!! | TTATTGAAAATTCTTAATTT+TGG | - | chr4_2:69220848-69220867 | Msa0618310:intron | 10.0% |
| !!! | AGTTTGTATGTATATTTTTT+AGG | - | chr4_2:69220444-69220463 | Msa0618310:intron | 15.0% |
| !!! | AAAATTCTTAATTTTGGTAT+AGG | - | chr4_2:69220854-69220873 | Msa0618310:intron | 15.0% |
| !! | TTTACAATTAGATAATAACA+AGG | - | chr4_2:69221537-69221556 | Msa0618310:intron | 15.0% |
| !! | TCAATAATTCATTATAACTA+AGG | + | chr4_2:69222205-69222224 | None:intergenic | 15.0% |
| !! | AATTGAATTGAATTTCAGAT+TGG | - | chr4_2:69220205-69220224 | Msa0618310:three_prime_UTR | 20.0% |
| !! | ATTGAATTGAATTTCAGATT+GGG | - | chr4_2:69220206-69220225 | Msa0618310:three_prime_UTR | 20.0% |
| !!! | TGGAAATTGATAATAATCTT+GGG | - | chr4_2:69220514-69220533 | Msa0618310:intron | 20.0% |
| !! | AAAATAGTATGATTCAGTTA+TGG | - | chr4_2:69220739-69220758 | Msa0618310:intron | 20.0% |
| !!! | AATTTTCAATAAACAGAATC+AGG | + | chr4_2:69220840-69220859 | None:intergenic | 20.0% |
| !!! | AATTTTCAATAAACAGAATC+AGG | + | chr4_2:69220840-69220859 | None:intergenic | 20.0% |
| !!! | GTTTAGACTAAATATAGTTT+TGG | - | chr4_2:69221164-69221183 | Msa0618310:intron | 20.0% |
| !!! | CTAACAAAATTTTGAGAAAA+TGG | - | chr4_2:69221219-69221238 | Msa0618310:intron | 20.0% |
| !!! | TTAATCTTCAACATTTTACT+TGG | + | chr4_2:69221379-69221398 | None:intergenic | 20.0% |
| !!! | TTTTTTTAATGTAACCTAGA+CGG | - | chr4_2:69221739-69221758 | Msa0618310:intron | 20.0% |
| ! | AAAAAAAAGAGAGATGAAAG+AGG | + | chr4_2:69220137-69220156 | None:intergenic | 25.0% |
| ! | AAAATCAAAGAAGCAATACA+AGG | - | chr4_2:69220491-69220510 | Msa0618310:intron | 25.0% |
| !! | GTGGAAATTGATAATAATCT+TGG | - | chr4_2:69220513-69220532 | Msa0618310:intron | 25.0% |
| !! | GGAAATTGATAATAATCTTG+GGG | - | chr4_2:69220515-69220534 | Msa0618310:intron | 25.0% |
| !! | GAAATTGATAATAATCTTGG+GGG | - | chr4_2:69220516-69220535 | Msa0618310:intron | 25.0% |
| !! | AAATCCGAATTTTATTCTCT+CGG | - | chr4_2:69220676-69220695 | Msa0618310:intron | 25.0% |
| !! | TTTTCCGAGAGAATAAAATT+CGG | + | chr4_2:69220683-69220702 | None:intergenic | 25.0% |
| !! | TAAACAGAATCAGGTTATTT+TGG | + | chr4_2:69220831-69220850 | None:intergenic | 25.0% |
| !! | TAAACAGAATCAGGTTATTT+TGG | + | chr4_2:69220831-69220850 | None:intergenic | 25.0% |
| ! | CATCTATATCATCTAACATT+TGG | - | chr4_2:69220984-69221003 | Msa0618310:intron | 25.0% |
| ! | CTAACATAGATAGAAATAGA+AGG | + | chr4_2:69221907-69221926 | None:intergenic | 25.0% |
| !!! | AATAGAAGACATGTTATTTC+AGG | - | chr4_2:69222349-69222368 | Msa0618310:five_prime_UTR | 25.0% |
| GAATCAGAATCGATGAAATT+AGG | - | chr4_2:69220014-69220033 | Msa0618310:three_prime_UTR | 30.0% | |
| AGTGTGTTGTAAATGGTTAA+GGG | + | chr4_2:69220096-69220115 | None:intergenic | 30.0% | |
| TAGTGTGTTGTAAATGGTTA+AGG | + | chr4_2:69220097-69220116 | None:intergenic | 30.0% | |
| CATACATAGTGTGTTGTAAA+TGG | + | chr4_2:69220103-69220122 | None:intergenic | 30.0% | |
| AATTGAATTTCAGATTGGGA+AGG | - | chr4_2:69220210-69220229 | Msa0618310:three_prime_UTR | 30.0% | |
| AAACAATGTAGCTCATAATC+TGG | + | chr4_2:69220574-69220593 | None:intergenic | 30.0% | |
| TATTCTCTCGGAAAATTAAC+AGG | - | chr4_2:69220688-69220707 | Msa0618310:intron | 30.0% | |
| !! | TTCTTAATTTTGGTATAGGC+AGG | - | chr4_2:69220858-69220877 | Msa0618310:intron | 30.0% |
| !! | ATCATCTCACATTTAGTTTG+TGG | - | chr4_2:69221015-69221034 | Msa0618310:intron | 30.0% |
| ! | AGAAGTTGCTGAAATTTTTC+TGG | + | chr4_2:69221072-69221091 | None:intergenic | 30.0% |
| TTGCATGCACTACATTATTA+GGG | - | chr4_2:69221103-69221122 | Msa0618310:intron | 30.0% | |
| ! | GGTCTTTTATCTTACTGTTT+TGG | - | chr4_2:69221185-69221204 | Msa0618310:intron | 30.0% |
| GAAAATGGAGAAAAACACAA+AGG | - | chr4_2:69221234-69221253 | Msa0618310:intron | 30.0% | |
| GAGAAAAACACAAAGGATAT+AGG | - | chr4_2:69221241-69221260 | Msa0618310:intron | 30.0% | |
| ! | ATCATTGGTGATAACAGTTA+AGG | - | chr4_2:69221292-69221311 | Msa0618310:intron | 30.0% |
| AACAGTTAAGGATTGACATT+AGG | - | chr4_2:69221304-69221323 | Msa0618310:intron | 30.0% | |
| ACAGTTAAGGATTGACATTA+GGG | - | chr4_2:69221305-69221324 | Msa0618310:intron | 30.0% | |
| ! | GTTGAAGATTAAGTTGTCTT+TGG | - | chr4_2:69221387-69221406 | Msa0618310:intron | 30.0% |
| TGATTACAAATTGACAGTGA+AGG | - | chr4_2:69221410-69221429 | Msa0618310:intron | 30.0% | |
| TAGATAATAACAAGGCGATT+TGG | - | chr4_2:69221545-69221564 | Msa0618310:intron | 30.0% | |
| ATTGGAAGTGATGACAAATA+TGG | - | chr4_2:69221667-69221686 | Msa0618310:intron | 30.0% | |
| AAATCAGTTCAAGTCATCTA+AGG | + | chr4_2:69221715-69221734 | None:intergenic | 30.0% | |
| !! | GGTTGATAAACATATACTGA+TGG | - | chr4_2:69221805-69221824 | Msa0618310:intron | 30.0% |
| AGATGAACAGTAGAAGAAAA+AGG | - | chr4_2:69221839-69221858 | Msa0618310:intron | 30.0% | |
| GATGAACAGTAGAAGAAAAA+GGG | - | chr4_2:69221840-69221859 | Msa0618310:intron | 30.0% | |
| TGGATAAGTTGTTGAAAGTT+TGG | + | chr4_2:69222013-69222032 | None:intergenic | 30.0% | |
| GATAACAGCAATAGTTACTT+AGG | + | chr4_2:69222096-69222115 | None:intergenic | 30.0% | |
| CTTGAAATGCCTAAGTTATA+TGG | - | chr4_2:69222155-69222174 | Msa0618310:intron | 30.0% | |
| TAAACACGTCCATATAACTT+AGG | + | chr4_2:69222167-69222186 | None:intergenic | 30.0% | |
| AGAAATGAAGAAAACAATGC+AGG | + | chr4_2:69222237-69222256 | None:intergenic | 30.0% | |
| TTCTTCATTTCTTGTCCAAA+AGG | - | chr4_2:69222245-69222264 | Msa0618310:CDS | 30.0% | |
| ! | ATGCATGACTATTTTCCTTT+TGG | + | chr4_2:69222263-69222282 | None:intergenic | 30.0% |
| AAAACGGTTTCATTTGGTCA+CGG | - | chr4_2:69219965-69219984 | Msa0618310:three_prime_UTR | 35.0% | |
| ATCAAAGAAGCAATACAAGG+TGG | - | chr4_2:69220494-69220513 | Msa0618310:intron | 35.0% | |
| ! | ACTCAAGTGTTAGTTTCGTT+AGG | + | chr4_2:69220605-69220624 | None:intergenic | 35.0% |
| ACTAACACTTGAGTGAGTTT+CGG | - | chr4_2:69220611-69220630 | Msa0618310:intron | 35.0% | |
| AGTTTCGGAAAAGTGAAAGA+TGG | - | chr4_2:69220626-69220645 | Msa0618310:intron | 35.0% | |
| GTTTCGGAAAAGTGAAAGAT+GGG | - | chr4_2:69220627-69220646 | Msa0618310:intron | 35.0% | |
| GGATTTCAGAGCTATTATCA+AGG | + | chr4_2:69220662-69220681 | None:intergenic | 35.0% | |
| ! | ATGATTCAGTTATGGACTGT+TGG | - | chr4_2:69220747-69220766 | Msa0618310:intron | 35.0% |
| !! | CACATTTAGTTTGTGGCAAA+AGG | - | chr4_2:69221022-69221041 | Msa0618310:intron | 35.0% |
| !! | AAAAGGTGCTACAATTGTTG+AGG | - | chr4_2:69221039-69221058 | Msa0618310:intron | 35.0% |
| GTTGCATGCACTACATTATT+AGG | - | chr4_2:69221102-69221121 | Msa0618310:intron | 35.0% | |
| CATTATTAGGGATTCCTTTG+TGG | - | chr4_2:69221115-69221134 | Msa0618310:intron | 35.0% | |
| !! | GGTGTTTTTGAACATTATGC+TGG | - | chr4_2:69221262-69221281 | Msa0618310:intron | 35.0% |
| TATGCTGGTGAAGTTATCAT+TGG | - | chr4_2:69221277-69221296 | Msa0618310:intron | 35.0% | |
| CAGTTAAGGATTGACATTAG+GGG | - | chr4_2:69221306-69221325 | Msa0618310:intron | 35.0% | |
| ACAGTGAAGGAGTTTCAATA+CGG | - | chr4_2:69221423-69221442 | Msa0618310:intron | 35.0% | |
| GAGTTTCAATACGGTAACAA+GGG | - | chr4_2:69221432-69221451 | Msa0618310:intron | 35.0% | |
| CCAAAGACAACTTTACCATT+TGG | + | chr4_2:69221498-69221517 | None:intergenic | 35.0% | |
| CCAAATGGTAAAGTTGTCTT+TGG | - | chr4_2:69221495-69221514 | Msa0618310:intron | 35.0% | |
| AATGGTAAAGTTGTCTTTGG+TGG | - | chr4_2:69221498-69221517 | Msa0618310:intron | 35.0% | |
| CACTAGAAGTCAAGTCAAAA+AGG | - | chr4_2:69221587-69221606 | Msa0618310:intron | 35.0% | |
| CTTCTTCCTAAACCAAGAAT+TGG | - | chr4_2:69221649-69221668 | Msa0618310:intron | 35.0% | |
| TCACTTCCAATTCTTGGTTT+AGG | + | chr4_2:69221658-69221677 | None:intergenic | 35.0% | |
| TTGTCATCACTTCCAATTCT+TGG | + | chr4_2:69221664-69221683 | None:intergenic | 35.0% | |
| ! | ACCTAGACGGTTTGTTTATT+AGG | - | chr4_2:69221752-69221771 | Msa0618310:intron | 35.0% |
| ! | CCTAGACGGTTTGTTTATTA+GGG | - | chr4_2:69221753-69221772 | Msa0618310:intron | 35.0% |
| AAACATATACTGATGGAGTG+AGG | - | chr4_2:69221812-69221831 | Msa0618310:intron | 35.0% | |
| AACATATACTGATGGAGTGA+GGG | - | chr4_2:69221813-69221832 | Msa0618310:intron | 35.0% | |
| ACAGTAGAAGAAAAAGGGTT+AGG | - | chr4_2:69221845-69221864 | Msa0618310:intron | 35.0% | |
| ACGTTACTCATAGAATCTTC+AGG | + | chr4_2:69222045-69222064 | None:intergenic | 35.0% | |
| CTATGAGTAACGTTATTGAC+AGG | - | chr4_2:69222052-69222071 | Msa0618310:CDS | 35.0% | |
| TACTTAGGCATTTCAAGATC+CGG | + | chr4_2:69222081-69222100 | None:intergenic | 35.0% | |
| AACTTAGGCATTTCAAGATC+CGG | + | chr4_2:69222152-69222171 | None:intergenic | 35.0% | |
| TTGTTAGCAATGAAGTTCAG+GGG | + | chr4_2:69222313-69222332 | None:intergenic | 35.0% | |
| CTTGTTAGCAATGAAGTTCA+GGG | + | chr4_2:69222314-69222333 | None:intergenic | 35.0% | |
| ! | ACTTGTTAGCAATGAAGTTC+AGG | + | chr4_2:69222315-69222334 | None:intergenic | 35.0% |
| !! | AGAAGACATGTTATTTCAGG+AGG | - | chr4_2:69222352-69222371 | Msa0618310:five_prime_UTR | 35.0% |
| GTTAAGGGAACGAAGATCAT+CGG | + | chr4_2:69220081-69220100 | None:intergenic | 40.0% | |
| TGTAGCTCATAATCTGGCTA+AGG | + | chr4_2:69220568-69220587 | None:intergenic | 40.0% | |
| !!! | GTTATTTTGGATCGTGCAGA+GGG | + | chr4_2:69220818-69220837 | None:intergenic | 40.0% |
| !!! | GTTATTTTGGATCGTGCAGA+GGG | + | chr4_2:69220818-69220837 | None:intergenic | 40.0% |
| !!! | GCTGAAATTTTTCTGGAACC+TGG | + | chr4_2:69221065-69221084 | None:intergenic | 40.0% |
| GGAGTTTCAATACGGTAACA+AGG | - | chr4_2:69221431-69221450 | Msa0618310:intron | 40.0% | |
| !! | AATACGGTAACAAGGGCATT+TGG | - | chr4_2:69221439-69221458 | Msa0618310:intron | 40.0% |
| ACACTAGAAACCAAGCCAAA+TGG | - | chr4_2:69221480-69221499 | Msa0618310:intron | 40.0% | |
| GACAACTTTACCATTTGGCT+TGG | + | chr4_2:69221493-69221512 | None:intergenic | 40.0% | |
| CTAGTGTTTACATGCTTCTC+TGG | + | chr4_2:69221573-69221592 | None:intergenic | 40.0% | |
| CCCTAATAAACAAACCGTCT+AGG | + | chr4_2:69221756-69221775 | None:intergenic | 40.0% | |
| ACCATTGTACCTAACCAGAA+CGG | + | chr4_2:69221788-69221807 | None:intergenic | 40.0% | |
| ! | TCATGTTTCTGCAAAAGGCA+AGG | + | chr4_2:69221987-69222006 | None:intergenic | 40.0% |
| ! | GGTCTTCATGTTTCTGCAAA+AGG | + | chr4_2:69221992-69222011 | None:intergenic | 40.0% |
| GAATCTTCAGGAAATGCATC+TGG | + | chr4_2:69222033-69222052 | None:intergenic | 40.0% | |
| TAACGTTATTGACAGGAGAC+CGG | - | chr4_2:69222059-69222078 | Msa0618310:CDS | 40.0% | |
| GTTATTCGAACGTGTTTGAC+AGG | - | chr4_2:69222123-69222142 | Msa0618310:intron | 40.0% | |
| TTTCAGATTGGGAAGGTTGC+AGG | - | chr4_2:69220217-69220236 | Msa0618310:three_prime_UTR | 45.0% | |
| TACCCAGATTTCTCCTGACA+TGG | - | chr4_2:69220289-69220308 | Msa0618310:CDS | 45.0% | |
| AGCCATGTCAGGAGAAATCT+GGG | + | chr4_2:69220294-69220313 | None:intergenic | 45.0% | |
| TAGCCATGTCAGGAGAAATC+TGG | + | chr4_2:69220295-69220314 | None:intergenic | 45.0% | |
| !!! | GGTTATTTTGGATCGTGCAG+AGG | + | chr4_2:69220819-69220838 | None:intergenic | 45.0% |
| TTTGGTATAGGCAGGCAGTA+TGG | - | chr4_2:69220866-69220885 | Msa0618310:intron | 45.0% | |
| !!! | GGTTATTTTGGATCGTGCAG+AGG | + | chr4_2:69220819-69220838 | None:intergenic | 45.0% |
| TCAGCAACTTCTGCAAGTTG+AGG | - | chr4_2:69221080-69221099 | Msa0618310:intron | 45.0% | |
| GGATTCCTTTGTGGTTCATG+CGG | - | chr4_2:69221124-69221143 | Msa0618310:intron | 45.0% | |
| GATTCCTTTGTGGTTCATGC+GGG | - | chr4_2:69221125-69221144 | Msa0618310:intron | 45.0% | |
| ATTCCTTTGTGGTTCATGCG+GGG | - | chr4_2:69221126-69221145 | Msa0618310:intron | 45.0% | |
| TTGACATTAGGGGCAACAAC+AGG | - | chr4_2:69221316-69221335 | Msa0618310:intron | 45.0% | |
| TGACATTAGGGGCAACAACA+GGG | - | chr4_2:69221317-69221336 | Msa0618310:intron | 45.0% | |
| CTTGCAAACACAGCAGCAAA+AGG | - | chr4_2:69221615-69221634 | Msa0618310:intron | 45.0% | |
| ! | CTATCTTACCCGTTCTGGTT+AGG | - | chr4_2:69221776-69221795 | Msa0618310:intron | 45.0% |
| CCATTGTACCTAACCAGAAC+GGG | + | chr4_2:69221787-69221806 | None:intergenic | 45.0% | |
| GAAGTTCAGGGGCAAGAAAT+TGG | + | chr4_2:69222302-69222321 | None:intergenic | 45.0% | |
| !! | CGTGTGTTTCTAGCCATGTC+AGG | + | chr4_2:69220305-69220324 | None:intergenic | 50.0% |
| TACTGACCTCCCTCAAGAGT+TGG | - | chr4_2:69220772-69220791 | Msa0618310:intron | 50.0% | |
| ACTGACCTCCCTCAAGAGTT+GGG | - | chr4_2:69220773-69220792 | Msa0618310:intron | 50.0% | |
| GTGCTACAATTGTTGAGGCC+AGG | - | chr4_2:69221044-69221063 | Msa0618310:intron | 50.0% | |
| TTACCCCGCATGAACCACAA+AGG | + | chr4_2:69221132-69221151 | None:intergenic | 50.0% | |
| GACATTAGGGGCAACAACAG+GGG | - | chr4_2:69221318-69221337 | Msa0618310:intron | 50.0% | |
| TAGGGCTATCTTACCCGTTC+TGG | - | chr4_2:69221771-69221790 | Msa0618310:intron | 50.0% | |
| ! | CCCGTTCTGGTTAGGTACAA+TGG | - | chr4_2:69221784-69221803 | Msa0618310:intron | 50.0% |
| GAACGTGTTTGACAGGAGAC+CGG | - | chr4_2:69222130-69222149 | Msa0618310:intron | 50.0% | |
| GACCTCCCTCAAGAGTTGGG+AGG | - | chr4_2:69220776-69220795 | Msa0618310:intron | 60.0% | |
| TGCCTCCCAACTCTTGAGGG+AGG | + | chr4_2:69220781-69220800 | None:intergenic | 60.0% | |
| TCCCTCAAGAGTTGGGAGGC+AGG | - | chr4_2:69220780-69220799 | Msa0618310:intron | 60.0% | |
| GCCTGCCTCCCAACTCTTGA+GGG | + | chr4_2:69220784-69220803 | None:intergenic | 60.0% | |
| TGCCTGCCTCCCAACTCTTG+AGG | + | chr4_2:69220785-69220804 | None:intergenic | 60.0% | |
| GAGTTGGGAGGCAGGCAGTA+TGG | - | chr4_2:69220788-69220807 | Msa0618310:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 69219962 | 69222381 | 69219962 | ID=Msa0618310;Name=Msa0618310 |
| chr4_2 | mRNA | 69219962 | 69222381 | 69219962 | ID=Msa0618310-mRNA-1;Parent=Msa0618310;Name=Msa0618310-mRNA-1;_AED=0.08;_eAED=0.08;_QI=34|1|1|1|1|1|3|280|125 |
| chr4_2 | exon | 69219962 | 69220344 | 69219962 | ID=Msa0618310-mRNA-1:exon:20015;Parent=Msa0618310-mRNA-1 |
| chr4_2 | exon | 69221968 | 69222120 | 69221968 | ID=Msa0618310-mRNA-1:exon:20014;Parent=Msa0618310-mRNA-1 |
| chr4_2 | exon | 69222226 | 69222381 | 69222226 | ID=Msa0618310-mRNA-1:exon:20013;Parent=Msa0618310-mRNA-1 |
| chr4_2 | five_prime_UTR | 69222348 | 69222381 | 69222348 | ID=Msa0618310-mRNA-1:five_prime_utr;Parent=Msa0618310-mRNA-1 |
| chr4_2 | CDS | 69222226 | 69222347 | 69222226 | ID=Msa0618310-mRNA-1:cds;Parent=Msa0618310-mRNA-1 |
| chr4_2 | CDS | 69221968 | 69222120 | 69221968 | ID=Msa0618310-mRNA-1:cds;Parent=Msa0618310-mRNA-1 |
| chr4_2 | CDS | 69220242 | 69220344 | 69220242 | ID=Msa0618310-mRNA-1:cds;Parent=Msa0618310-mRNA-1 |
| chr4_2 | three_prime_UTR | 69219962 | 69220241 | 69219962 | ID=Msa0618310-mRNA-1:three_prime_utr;Parent=Msa0618310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
