Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1236710 | XP_024627594.1 | 95.918 | 98 | 3 | 1 | 1 | 98 | 1 | 97 | 7.50e-57 | 185 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1236710 | sp|O81223|CNBL4_ARATH | 47.959 | 98 | 31 | 1 | 1 | 98 | 1 | 78 | 4.01e-20 | 83.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1236710 | A0A396GEZ0 | 95.918 | 98 | 3 | 1 | 1 | 98 | 1 | 97 | 3.58e-57 | 185 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015480 | Msa1236710 | 0.800647 | 1.306263e-48 | -8.615850e-47 |
| Msa0071250 | Msa1236710 | 0.802582 | 5.240261e-49 | -8.615850e-47 |
| Msa0089820 | Msa1236710 | 0.802612 | 5.166195e-49 | -8.615850e-47 |
| Msa0109590 | Msa1236710 | 0.809133 | 2.199453e-50 | -8.615850e-47 |
| Msa0667740 | Msa1236710 | 0.817556 | 3.101551e-52 | -8.615850e-47 |
| Msa0689780 | Msa1236710 | 0.801426 | 9.057091e-49 | -8.615850e-47 |
| Msa0711150 | Msa1236710 | 0.817955 | 2.520582e-52 | -8.615850e-47 |
| Msa0763920 | Msa1236710 | 0.800530 | 1.380585e-48 | -8.615850e-47 |
| Msa0790820 | Msa1236710 | -0.805592 | 1.238906e-49 | -8.615850e-47 |
| Msa0817460 | Msa1236710 | 0.820921 | 5.312666e-53 | -8.615850e-47 |
| Msa0830230 | Msa1236710 | 0.807040 | 6.138082e-50 | -8.615850e-47 |
| Msa0140500 | Msa1236710 | -0.812685 | 3.744515e-51 | -8.615850e-47 |
| Msa0233370 | Msa1236710 | 0.811748 | 5.994374e-51 | -8.615850e-47 |
| Msa1231840 | Msa1236710 | 0.811408 | 7.105820e-51 | -8.615850e-47 |
| Msa1236710 | Msa1270660 | 0.822619 | 2.150226e-53 | -8.615850e-47 |
| Msa1236710 | Msa1270730 | 0.803612 | 3.207447e-49 | -8.615850e-47 |
| Msa1236710 | Msa1271130 | 0.804895 | 1.734618e-49 | -8.615850e-47 |
| Msa1236710 | Msa1312520 | 0.810791 | 9.667972e-51 | -8.615850e-47 |
| Msa1236710 | Msa1316360 | 0.803289 | 3.743111e-49 | -8.615850e-47 |
| Msa1236710 | Msa1355890 | 0.808788 | 2.607383e-50 | -8.615850e-47 |
| Msa1236710 | Msa1420270 | 0.801809 | 7.556447e-49 | -8.615850e-47 |
| Msa1236710 | Msa1445390 | -0.811861 | 5.664146e-51 | -8.615850e-47 |
| Msa1236710 | Msa1449340 | -0.807791 | 4.253446e-50 | -8.615850e-47 |
| Msa1236710 | Msa1460320 | -0.800767 | 1.234653e-48 | -8.615850e-47 |
| Msa0381610 | Msa1236710 | -0.815024 | 1.142798e-51 | -8.615850e-47 |
| Msa0389210 | Msa1236710 | 0.802286 | 6.030495e-49 | -8.615850e-47 |
| Msa0422180 | Msa1236710 | 0.801269 | 9.749025e-49 | -8.615850e-47 |
| Msa0433410 | Msa1236710 | -0.803038 | 4.218504e-49 | -8.615850e-47 |
| Msa0457510 | Msa1236710 | 0.800461 | 1.425761e-48 | -8.615850e-47 |
| Msa0994370 | Msa1236710 | 0.808915 | 2.449078e-50 | -8.615850e-47 |
| Msa1001390 | Msa1236710 | 0.800021 | 1.752318e-48 | -8.615850e-47 |
| Msa1011090 | Msa1236710 | 0.807852 | 4.128764e-50 | -8.615850e-47 |
| Msa1063420 | Msa1236710 | 0.804760 | 1.850991e-49 | -8.615850e-47 |
| Msa1081790 | Msa1236710 | -0.805149 | 1.534254e-49 | -8.615850e-47 |
| Msa1089460 | Msa1236710 | 0.809050 | 2.291679e-50 | -8.615850e-47 |
| Msa0241140 | Msa1236710 | 0.809556 | 1.784810e-50 | -8.615850e-47 |
| Msa0248770 | Msa1236710 | 0.807903 | 4.026273e-50 | -8.615850e-47 |
| Msa0262370 | Msa1236710 | 0.800314 | 1.527540e-48 | -8.615850e-47 |
| Msa0278580 | Msa1236710 | 0.814460 | 1.523729e-51 | -8.615850e-47 |
| Msa0296980 | Msa1236710 | -0.810955 | 8.911888e-51 | -8.615850e-47 |
| Msa0317970 | Msa1236710 | 0.802438 | 5.610358e-49 | -8.615850e-47 |
| Msa0337590 | Msa1236710 | 0.806549 | 7.793102e-50 | -8.615850e-47 |
| Msa1111870 | Msa1236710 | 0.818413 | 1.985693e-52 | -8.615850e-47 |
| Msa1142670 | Msa1236710 | 0.801188 | 1.012978e-48 | -8.615850e-47 |
| Msa1143020 | Msa1236710 | 0.803924 | 2.763500e-49 | -8.615850e-47 |
| Msa1144040 | Msa1236710 | 0.802020 | 6.840227e-49 | -8.615850e-47 |
| Msa1180500 | Msa1236710 | 0.807889 | 4.054138e-50 | -8.615850e-47 |
| Msa0518170 | Msa1236710 | 0.804391 | 2.209117e-49 | -8.615850e-47 |
| Msa0844110 | Msa1236710 | 0.821825 | 3.286192e-53 | -8.615850e-47 |
| Msa0890550 | Msa1236710 | 0.822031 | 2.944173e-53 | -8.615850e-47 |
| Msa0894710 | Msa1236710 | 0.809618 | 1.731421e-50 | -8.615850e-47 |
| Msa0902830 | Msa1236710 | 0.806242 | 9.046211e-50 | -8.615850e-47 |
| Msa0918390 | Msa1236710 | 0.803993 | 2.673325e-49 | -8.615850e-47 |
| Msa0921420 | Msa1236710 | 0.811160 | 8.043890e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1236710 | MtrunA17_Chr8g0346911 | 95.918 | 98 | 3 | 1 | 1 | 98 | 1 | 97 | 6.90e-61 | 185 |
| Msa1236710 | MtrunA17_Chr3g0126811 | 64.407 | 59 | 21 | 0 | 40 | 98 | 17 | 75 | 1.79e-19 | 76.6 |
| Msa1236710 | MtrunA17_Chr1g0151621 | 52.459 | 61 | 29 | 0 | 38 | 98 | 53 | 113 | 4.56e-14 | 65.1 |
| Msa1236710 | MtrunA17_Chr8g0388331 | 57.143 | 56 | 24 | 0 | 43 | 98 | 19 | 74 | 6.10e-14 | 64.3 |
| Msa1236710 | MtrunA17_Chr4g0055421 | 52.542 | 59 | 28 | 0 | 40 | 98 | 16 | 74 | 7.06e-14 | 64.3 |
| Msa1236710 | MtrunA17_Chr5g0446931 | 50.847 | 59 | 29 | 0 | 40 | 98 | 31 | 89 | 2.75e-13 | 62.8 |
| Msa1236710 | MtrunA17_Chr3g0102821 | 49.153 | 59 | 30 | 0 | 40 | 98 | 31 | 89 | 5.93e-13 | 62.0 |
| Msa1236710 | MtrunA17_Chr5g0399921 | 49.153 | 59 | 30 | 0 | 40 | 98 | 15 | 73 | 1.90e-12 | 58.5 |
| Msa1236710 | MtrunA17_Chr4g0076551 | 49.091 | 55 | 28 | 0 | 44 | 98 | 36 | 90 | 2.45e-12 | 60.1 |
| Msa1236710 | MtrunA17_Chr8g0341941 | 53.704 | 54 | 25 | 0 | 45 | 98 | 66 | 119 | 3.58e-12 | 60.1 |
| Msa1236710 | MtrunA17_Chr2g0290771 | 55.319 | 47 | 21 | 0 | 52 | 98 | 8 | 54 | 1.83e-11 | 57.4 |
| Msa1236710 | MtrunA17_Chr2g0290751 | 54.000 | 50 | 23 | 0 | 49 | 98 | 43 | 92 | 2.24e-11 | 57.4 |
| Msa1236710 | MtrunA17_Chr2g0290761 | 54.000 | 50 | 23 | 0 | 49 | 98 | 43 | 92 | 2.93e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1236710 | AT5G24270.4 | 47.959 | 98 | 31 | 1 | 1 | 98 | 1 | 78 | 4.07e-21 | 83.6 |
| Msa1236710 | AT5G24270.1 | 47.959 | 98 | 31 | 1 | 1 | 98 | 1 | 78 | 4.07e-21 | 83.6 |
| Msa1236710 | AT5G24270.2 | 47.959 | 98 | 31 | 1 | 1 | 98 | 1 | 78 | 4.07e-21 | 83.6 |
| Msa1236710 | AT1G64480.4 | 61.017 | 59 | 23 | 0 | 40 | 98 | 20 | 78 | 6.98e-18 | 74.7 |
| Msa1236710 | AT1G64480.2 | 61.017 | 59 | 23 | 0 | 40 | 98 | 20 | 78 | 9.06e-18 | 74.7 |
| Msa1236710 | AT1G64480.3 | 61.017 | 59 | 23 | 0 | 40 | 98 | 20 | 78 | 9.06e-18 | 74.7 |
| Msa1236710 | AT1G64480.1 | 61.017 | 59 | 23 | 0 | 40 | 98 | 20 | 78 | 9.06e-18 | 74.7 |
| Msa1236710 | AT5G24270.5 | 64.000 | 50 | 18 | 0 | 49 | 98 | 4 | 53 | 8.10e-15 | 66.6 |
| Msa1236710 | AT5G47100.2 | 57.407 | 54 | 23 | 0 | 45 | 98 | 21 | 74 | 5.27e-14 | 64.3 |
| Msa1236710 | AT5G47100.1 | 57.407 | 54 | 23 | 0 | 45 | 98 | 21 | 74 | 6.83e-14 | 64.7 |
| Msa1236710 | AT4G17615.4 | 51.852 | 54 | 26 | 0 | 45 | 98 | 21 | 74 | 3.34e-12 | 60.1 |
| Msa1236710 | AT4G17615.1 | 51.852 | 54 | 26 | 0 | 45 | 98 | 21 | 74 | 3.34e-12 | 60.1 |
| Msa1236710 | AT4G17615.5 | 51.852 | 54 | 26 | 0 | 45 | 98 | 21 | 74 | 3.34e-12 | 60.1 |
| Msa1236710 | AT4G26570.2 | 48.276 | 58 | 30 | 0 | 41 | 98 | 32 | 89 | 3.70e-12 | 60.1 |
| Msa1236710 | AT4G26570.1 | 48.276 | 58 | 30 | 0 | 41 | 98 | 32 | 89 | 3.86e-12 | 60.1 |
| Msa1236710 | AT4G33000.3 | 53.448 | 58 | 27 | 0 | 41 | 98 | 53 | 110 | 4.32e-12 | 58.9 |
| Msa1236710 | AT4G33000.4 | 53.448 | 58 | 27 | 0 | 41 | 98 | 53 | 110 | 6.99e-12 | 58.9 |
| Msa1236710 | AT4G33000.6 | 53.448 | 58 | 27 | 0 | 41 | 98 | 53 | 110 | 6.99e-12 | 58.9 |
| Msa1236710 | AT4G17615.3 | 50.847 | 59 | 29 | 0 | 40 | 98 | 16 | 74 | 7.29e-12 | 59.7 |
| Msa1236710 | AT5G55990.1 | 46.552 | 58 | 31 | 0 | 41 | 98 | 32 | 89 | 8.99e-12 | 58.9 |
| Msa1236710 | AT5G55990.2 | 46.552 | 58 | 31 | 0 | 41 | 98 | 32 | 89 | 8.99e-12 | 58.9 |
| Msa1236710 | AT4G33000.5 | 53.448 | 58 | 27 | 0 | 41 | 98 | 53 | 110 | 1.17e-11 | 58.5 |
| Msa1236710 | AT4G33000.2 | 53.448 | 58 | 27 | 0 | 41 | 98 | 53 | 110 | 1.18e-11 | 58.9 |
| Msa1236710 | AT4G33000.1 | 53.448 | 58 | 27 | 0 | 41 | 98 | 63 | 120 | 1.42e-11 | 58.9 |
Find 18 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCATATATATTAAATTAA+TGG | 0.254151 | 8_2:-15873023 | None:intergenic |
| AAAAGTAGCAGAAAATATTA+TGG | 0.327214 | 8_2:+15873259 | Msa1236710:CDS |
| CATAAAGTTTATGTAAAGAA+TGG | 0.346436 | 8_2:+15873223 | Msa1236710:exon |
| GAGAAATTTATATGCCTTCA+CGG | 0.403990 | 8_2:-15872984 | None:intergenic |
| AAACAAACGCAACCTCTTTG+TGG | 0.437485 | 8_2:+15874239 | Msa1236710:CDS |
| GACATAAGCTTAATAAGTGT+TGG | 0.437812 | 8_2:-15873135 | None:intergenic |
| ATAAAGTTTATGTAAAGAAT+GGG | 0.465377 | 8_2:+15873224 | Msa1236710:exon |
| GAGAGAGGTGGAAATCTTGA+AGG | 0.495718 | 8_2:+15873992 | Msa1236710:CDS |
| CTTATCTTTGCCAACTTCAG+AGG | 0.524395 | 8_2:-15873288 | None:intergenic |
| ACGCAACCTCTTTGTGGATA+GGG | 0.528181 | 8_2:+15874245 | Msa1236710:CDS |
| TACATGGTGTTTCAGAAGCA+AGG | 0.531935 | 8_2:-15873373 | None:intergenic |
| ATGGATGGATCCTCTGAAGT+TGG | 0.534150 | 8_2:+15873278 | Msa1236710:CDS |
| GTAGCAGAAAATATTATGGA+TGG | 0.537395 | 8_2:+15873263 | Msa1236710:CDS |
| AACGCAACCTCTTTGTGGAT+AGG | 0.564160 | 8_2:+15874244 | Msa1236710:CDS |
| CCTAGCAGTTACTGTGAGAG+AGG | 0.600150 | 8_2:+15873977 | Msa1236710:intron |
| TGCATACCCTATCCACAAAG+AGG | 0.624228 | 8_2:-15874251 | None:intergenic |
| TAATCTATTAGGAACCGTGA+AGG | 0.651647 | 8_2:+15872970 | Msa1236710:five_prime_UTR |
| AGCAGTTACTGTGAGAGAGG+TGG | 0.654761 | 8_2:+15873980 | Msa1236710:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGCATATATATTAAATTAA+TGG | - | chr8_2:15873026-15873045 | None:intergenic | 10.0% |
| !! | ATGCATATATATTAAATTAA+TGG | - | chr8_2:15873026-15873045 | None:intergenic | 10.0% |
| !! | ATAAAGTTTATGTAAAGAAT+GGG | + | chr8_2:15873224-15873243 | Msa1236710:exon | 15.0% |
| !! | GAAAAAAAAAAAACTTGAAA+AGG | - | chr8_2:15873412-15873431 | None:intergenic | 15.0% |
| !! | CTTATAATCTGTAAAATTAT+AGG | + | chr8_2:15873468-15873487 | Msa1236710:intron | 15.0% |
| !! | ATATATTAAGTGTAAAAAAG+AGG | - | chr8_2:15873565-15873584 | None:intergenic | 15.0% |
| !! | AATTAGTTATTGCTTAAAAA+AGG | + | chr8_2:15873586-15873605 | Msa1236710:intron | 15.0% |
| !! | ATTAGTTATTGCTTAAAAAA+GGG | + | chr8_2:15873587-15873606 | Msa1236710:intron | 15.0% |
| !! | ATAAAGTTTATGTAAAGAAT+GGG | + | chr8_2:15873224-15873243 | Msa1236710:exon | 15.0% |
| !! | GAAAAAAAAAAAACTTGAAA+AGG | - | chr8_2:15873412-15873431 | None:intergenic | 15.0% |
| !! | CTTATAATCTGTAAAATTAT+AGG | + | chr8_2:15873468-15873487 | Msa1236710:intron | 15.0% |
| !! | ATATATTAAGTGTAAAAAAG+AGG | - | chr8_2:15873565-15873584 | None:intergenic | 15.0% |
| !! | AATTAGTTATTGCTTAAAAA+AGG | + | chr8_2:15873586-15873605 | Msa1236710:intron | 15.0% |
| !! | ATTAGTTATTGCTTAAAAAA+GGG | + | chr8_2:15873587-15873606 | Msa1236710:intron | 15.0% |
| !!! | AAAATTGACTTTTCTTTCAT+TGG | + | chr8_2:15873109-15873128 | Msa1236710:five_prime_UTR | 20.0% |
| !! | CATAAAGTTTATGTAAAGAA+TGG | + | chr8_2:15873223-15873242 | Msa1236710:exon | 20.0% |
| !! | AAAAGTAGCAGAAAATATTA+TGG | + | chr8_2:15873259-15873278 | Msa1236710:CDS | 20.0% |
| !!! | TCAAGTTTTTTTTTTTTCCT+TGG | + | chr8_2:15873414-15873433 | Msa1236710:intron | 20.0% |
| !!! | AATATACTACTTTGATTTAG+TGG | + | chr8_2:15873532-15873551 | Msa1236710:intron | 20.0% |
| !! | TTAGTTATTGCTTAAAAAAG+GGG | + | chr8_2:15873588-15873607 | Msa1236710:intron | 20.0% |
| !!! | AAAATTGACTTTTCTTTCAT+TGG | + | chr8_2:15873109-15873128 | Msa1236710:five_prime_UTR | 20.0% |
| !! | CATAAAGTTTATGTAAAGAA+TGG | + | chr8_2:15873223-15873242 | Msa1236710:exon | 20.0% |
| !! | AAAAGTAGCAGAAAATATTA+TGG | + | chr8_2:15873259-15873278 | Msa1236710:CDS | 20.0% |
| !!! | TCAAGTTTTTTTTTTTTCCT+TGG | + | chr8_2:15873414-15873433 | Msa1236710:intron | 20.0% |
| !!! | AATATACTACTTTGATTTAG+TGG | + | chr8_2:15873532-15873551 | Msa1236710:intron | 20.0% |
| !! | TTAGTTATTGCTTAAAAAAG+GGG | + | chr8_2:15873588-15873607 | Msa1236710:intron | 20.0% |
| ! | AGTCAAAAACGTAATCTATT+AGG | + | chr8_2:15872959-15872978 | Msa1236710:five_prime_UTR | 25.0% |
| !! | TCATTTTCTTTTACTTGTGA+AGG | - | chr8_2:15873320-15873339 | None:intergenic | 25.0% |
| ! | ACGTGATTTAGATAATTTCA+TGG | + | chr8_2:15873496-15873515 | Msa1236710:intron | 25.0% |
| !! | AAATAAGTTTAAAATGCTCG+CGG | - | chr8_2:15873705-15873724 | None:intergenic | 25.0% |
| !!! | CTTATTTTCATAAGTTCTAC+AGG | + | chr8_2:15873718-15873737 | Msa1236710:intron | 25.0% |
| ! | TAGCTTATGAAAACAGATTA+TGG | + | chr8_2:15873742-15873761 | Msa1236710:intron | 25.0% |
| ! | CATAAATTAAAACACACAAG+TGG | - | chr8_2:15873906-15873925 | None:intergenic | 25.0% |
| !! | GAAAAATGGACTTATTCAAA+AGG | + | chr8_2:15874046-15874065 | Msa1236710:CDS | 25.0% |
| ! | TGTGTATTGTGTATATTAAC+AGG | + | chr8_2:15874185-15874204 | Msa1236710:intron | 25.0% |
| ! | AGTCAAAAACGTAATCTATT+AGG | + | chr8_2:15872959-15872978 | Msa1236710:five_prime_UTR | 25.0% |
| !! | TCATTTTCTTTTACTTGTGA+AGG | - | chr8_2:15873320-15873339 | None:intergenic | 25.0% |
| ! | ACGTGATTTAGATAATTTCA+TGG | + | chr8_2:15873496-15873515 | Msa1236710:intron | 25.0% |
| !! | AAATAAGTTTAAAATGCTCG+CGG | - | chr8_2:15873705-15873724 | None:intergenic | 25.0% |
| !!! | CTTATTTTCATAAGTTCTAC+AGG | + | chr8_2:15873718-15873737 | Msa1236710:intron | 25.0% |
| ! | TAGCTTATGAAAACAGATTA+TGG | + | chr8_2:15873742-15873761 | Msa1236710:intron | 25.0% |
| ! | CATAAATTAAAACACACAAG+TGG | - | chr8_2:15873906-15873925 | None:intergenic | 25.0% |
| !! | GAAAAATGGACTTATTCAAA+AGG | + | chr8_2:15874046-15874065 | Msa1236710:CDS | 25.0% |
| ! | TGTGTATTGTGTATATTAAC+AGG | + | chr8_2:15874185-15874204 | Msa1236710:intron | 25.0% |
| GAGAAATTTATATGCCTTCA+CGG | - | chr8_2:15872987-15873006 | None:intergenic | 30.0% | |
| GACATAAGCTTAATAAGTGT+TGG | - | chr8_2:15873138-15873157 | None:intergenic | 30.0% | |
| GTAGCAGAAAATATTATGGA+TGG | + | chr8_2:15873263-15873282 | Msa1236710:CDS | 30.0% | |
| ! | CAAGACAATTTAACTTTCCA+AGG | - | chr8_2:15873434-15873453 | None:intergenic | 30.0% |
| ATAATCACTTCTGCTACAAT+CGG | + | chr8_2:15873836-15873855 | Msa1236710:intron | 30.0% | |
| ATTAAAACACACAAGTGGAA+AGG | - | chr8_2:15873901-15873920 | None:intergenic | 30.0% | |
| GTACACTATTCATATGCAAT+TGG | - | chr8_2:15873932-15873951 | None:intergenic | 30.0% | |
| TGCACAGTTATTGTGAAAAA+TGG | + | chr8_2:15874032-15874051 | Msa1236710:CDS | 30.0% | |
| GAGAAATTTATATGCCTTCA+CGG | - | chr8_2:15872987-15873006 | None:intergenic | 30.0% | |
| GACATAAGCTTAATAAGTGT+TGG | - | chr8_2:15873138-15873157 | None:intergenic | 30.0% | |
| GTAGCAGAAAATATTATGGA+TGG | + | chr8_2:15873263-15873282 | Msa1236710:CDS | 30.0% | |
| ! | CAAGACAATTTAACTTTCCA+AGG | - | chr8_2:15873434-15873453 | None:intergenic | 30.0% |
| ATAATCACTTCTGCTACAAT+CGG | + | chr8_2:15873836-15873855 | Msa1236710:intron | 30.0% | |
| ATTAAAACACACAAGTGGAA+AGG | - | chr8_2:15873901-15873920 | None:intergenic | 30.0% | |
| GTACACTATTCATATGCAAT+TGG | - | chr8_2:15873932-15873951 | None:intergenic | 30.0% | |
| TGCACAGTTATTGTGAAAAA+TGG | + | chr8_2:15874032-15874051 | Msa1236710:CDS | 30.0% | |
| TAATCTATTAGGAACCGTGA+AGG | + | chr8_2:15872970-15872989 | Msa1236710:five_prime_UTR | 35.0% | |
| AGGAAGCTTTCTTACTTACA+TGG | - | chr8_2:15873392-15873411 | None:intergenic | 35.0% | |
| CATAGTGCATACCATCTTAA+GGG | + | chr8_2:15873614-15873633 | Msa1236710:intron | 35.0% | |
| ! | ATACCATCTTAAGGGCTTTT+TGG | + | chr8_2:15873622-15873641 | Msa1236710:intron | 35.0% |
| AATCCAAAAAGCCCTTAAGA+TGG | - | chr8_2:15873628-15873647 | None:intergenic | 35.0% | |
| ! | TTTGGATTGACTTCTACACT+TGG | + | chr8_2:15873640-15873659 | Msa1236710:intron | 35.0% |
| ATCCAAACAGAACCTGAAAT+TGG | + | chr8_2:15873873-15873892 | Msa1236710:intron | 35.0% | |
| !! | AACCAATTTCAGGTTCTGTT+TGG | - | chr8_2:15873878-15873897 | None:intergenic | 35.0% |
| ACTTGAATCTCTTGTTCGAT+TGG | + | chr8_2:15874100-15874119 | Msa1236710:intron | 35.0% | |
| TAATCTATTAGGAACCGTGA+AGG | + | chr8_2:15872970-15872989 | Msa1236710:five_prime_UTR | 35.0% | |
| AGGAAGCTTTCTTACTTACA+TGG | - | chr8_2:15873392-15873411 | None:intergenic | 35.0% | |
| CATAGTGCATACCATCTTAA+GGG | + | chr8_2:15873614-15873633 | Msa1236710:intron | 35.0% | |
| ! | ATACCATCTTAAGGGCTTTT+TGG | + | chr8_2:15873622-15873641 | Msa1236710:intron | 35.0% |
| AATCCAAAAAGCCCTTAAGA+TGG | - | chr8_2:15873628-15873647 | None:intergenic | 35.0% | |
| ! | TTTGGATTGACTTCTACACT+TGG | + | chr8_2:15873640-15873659 | Msa1236710:intron | 35.0% |
| ATCCAAACAGAACCTGAAAT+TGG | + | chr8_2:15873873-15873892 | Msa1236710:intron | 35.0% | |
| !! | AACCAATTTCAGGTTCTGTT+TGG | - | chr8_2:15873878-15873897 | None:intergenic | 35.0% |
| ACTTGAATCTCTTGTTCGAT+TGG | + | chr8_2:15874100-15874119 | Msa1236710:intron | 35.0% | |
| CTTATCTTTGCCAACTTCAG+AGG | - | chr8_2:15873291-15873310 | None:intergenic | 40.0% | |
| TACATGGTGTTTCAGAAGCA+AGG | - | chr8_2:15873376-15873395 | None:intergenic | 40.0% | |
| GCATAGTGCATACCATCTTA+AGG | + | chr8_2:15873613-15873632 | Msa1236710:intron | 40.0% | |
| AGTGGAAAGGAACCAATTTC+AGG | - | chr8_2:15873888-15873907 | None:intergenic | 40.0% | |
| AAACAAACGCAACCTCTTTG+TGG | + | chr8_2:15874239-15874258 | Msa1236710:CDS | 40.0% | |
| CTTATCTTTGCCAACTTCAG+AGG | - | chr8_2:15873291-15873310 | None:intergenic | 40.0% | |
| TACATGGTGTTTCAGAAGCA+AGG | - | chr8_2:15873376-15873395 | None:intergenic | 40.0% | |
| GCATAGTGCATACCATCTTA+AGG | + | chr8_2:15873613-15873632 | Msa1236710:intron | 40.0% | |
| AGTGGAAAGGAACCAATTTC+AGG | - | chr8_2:15873888-15873907 | None:intergenic | 40.0% | |
| AAACAAACGCAACCTCTTTG+TGG | + | chr8_2:15874239-15874258 | Msa1236710:CDS | 40.0% | |
| !! | ATGGATGGATCCTCTGAAGT+TGG | + | chr8_2:15873278-15873297 | Msa1236710:CDS | 45.0% |
| GAGAGAGGTGGAAATCTTGA+AGG | + | chr8_2:15873992-15874011 | Msa1236710:CDS | 45.0% | |
| AACGCAACCTCTTTGTGGAT+AGG | + | chr8_2:15874244-15874263 | Msa1236710:CDS | 45.0% | |
| !! | ATGGATGGATCCTCTGAAGT+TGG | + | chr8_2:15873278-15873297 | Msa1236710:CDS | 45.0% |
| GAGAGAGGTGGAAATCTTGA+AGG | + | chr8_2:15873992-15874011 | Msa1236710:CDS | 45.0% | |
| CCTCTCTCACAGTAACTGCT+AGG | - | chr8_2:15873980-15873999 | None:intergenic | 50.0% | |
| CCTAGCAGTTACTGTGAGAG+AGG | + | chr8_2:15873977-15873996 | Msa1236710:intron | 50.0% | |
| AGCAGTTACTGTGAGAGAGG+TGG | + | chr8_2:15873980-15873999 | Msa1236710:intron | 50.0% | |
| CCTCTCTCACAGTAACTGCT+AGG | - | chr8_2:15873980-15873999 | None:intergenic | 50.0% | |
| CCTAGCAGTTACTGTGAGAG+AGG | + | chr8_2:15873977-15873996 | Msa1236710:intron | 50.0% | |
| AGCAGTTACTGTGAGAGAGG+TGG | + | chr8_2:15873980-15873999 | Msa1236710:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 15872939 | 15874266 | 15872939 | ID=Msa1236710;Name=Msa1236710 |
| chr8_2 | mRNA | 15872939 | 15874266 | 15872939 | ID=Msa1236710-mRNA-1;Parent=Msa1236710;Name=Msa1236710-mRNA-1;_AED=0.07;_eAED=0.07;_QI=303|0.5|0.33|0.66|1|1|3|0|98 |
| chr8_2 | exon | 15872939 | 15873392 | 15872939 | ID=Msa1236710-mRNA-1:exon:5939;Parent=Msa1236710-mRNA-1 |
| chr8_2 | exon | 15873985 | 15874067 | 15873985 | ID=Msa1236710-mRNA-1:exon:5940;Parent=Msa1236710-mRNA-1 |
| chr8_2 | exon | 15874207 | 15874266 | 15874207 | ID=Msa1236710-mRNA-1:exon:5941;Parent=Msa1236710-mRNA-1 |
| chr8_2 | five_prime_UTR | 15872939 | 15873241 | 15872939 | ID=Msa1236710-mRNA-1:five_prime_utr;Parent=Msa1236710-mRNA-1 |
| chr8_2 | CDS | 15873242 | 15873392 | 15873242 | ID=Msa1236710-mRNA-1:cds;Parent=Msa1236710-mRNA-1 |
| chr8_2 | CDS | 15873985 | 15874067 | 15873985 | ID=Msa1236710-mRNA-1:cds;Parent=Msa1236710-mRNA-1 |
| chr8_2 | CDS | 15874207 | 15874266 | 15874207 | ID=Msa1236710-mRNA-1:cds;Parent=Msa1236710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
