AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0089820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0089820 MtrunA17_Chr1g0208631 81.368 424 14 5 1 363 1 420 0.0 674
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 67 sgRNAs with CRISPR-Local

Find 600 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTTGTTCTTTCAATTTA+TGG 0.041976 1_2:-71485469 Msa0089820:CDS
TATGAGCAAGTGCTTGTTAA+TGG 0.171126 1_2:-71484371 Msa0089820:CDS
AGAAGAAGAAGAAGCGTTAT+TGG 0.205836 1_2:-71492399 Msa0089820:CDS
TATGTTTAGGAAACTGTATT+TGG 0.250546 1_2:-71492097 Msa0089820:CDS
GTTAATGTCATCCAGATTAA+AGG 0.264479 1_2:-71484648 Msa0089820:intron
ATCGGAGTGTTGTTGCAATT+TGG 0.294706 1_2:+71492298 None:intergenic
TTGAAAGAACAAAGCAAGTT+TGG 0.297122 1_2:+71485476 None:intergenic
GCAGATGCTTGGTTATGTTT+AGG 0.314045 1_2:-71492110 Msa0089820:CDS
AATTTGGAGGTTCTGTCGTC+AGG 0.349437 1_2:+71492314 None:intergenic
GGAAGGTGTTATTCTTAATC+AGG 0.352024 1_2:-71486341 Msa0089820:CDS
ATCCAAAGCAATTGCTTCCT+TGG 0.352141 1_2:+71489687 None:intergenic
AATATCTAGAGAACTATGAT+AGG 0.352347 1_2:-71488676 Msa0089820:CDS
ACCCTCTGACAGAAGGTCTA+TGG 0.391113 1_2:+71486389 None:intergenic
ATCTTCTTGACAGATAATCT+TGG 0.396486 1_2:-71489226 Msa0089820:intron
AGGAGTGAGATGGAGAATTC+AGG 0.412289 1_2:-71492437 None:intergenic
TGCCAAGGAAGCAATTGCTT+TGG 0.414023 1_2:-71489689 Msa0089820:CDS
TTCAATTTATGGTGTACGTC+AGG 0.425085 1_2:-71485458 Msa0089820:CDS
ATCCATCTCTTGCAGATGCT+TGG 0.454455 1_2:-71492121 Msa0089820:CDS
CCAGTTCAAATCTATACGCC+TGG 0.459498 1_2:-71484399 Msa0089820:intron
AACTATGATAGGGCCCTTAG+TGG 0.461017 1_2:-71488665 Msa0089820:CDS
TAGGGCCCTTAGTGGATTTG+AGG 0.467829 1_2:-71488657 Msa0089820:CDS
TCCTCTGCAGCGTTGAGACC+TGG 0.471479 1_2:+71488617 None:intergenic
ATTTGAGGCTGCTGCTTCAA+AGG 0.480860 1_2:-71488642 Msa0089820:CDS
TTCGTGACGTTGATGTGTCC+TGG 0.490545 1_2:-71484593 Msa0089820:CDS
GCACTATTAAAGTAAAAGTC+AGG 0.491009 1_2:+71488962 None:intergenic
GGAGTGTTGTTGCAATTTGG+AGG 0.491155 1_2:+71492301 None:intergenic
ATTAAAGTAAAAGTCAGGAT+TGG 0.509600 1_2:+71488967 None:intergenic
GCAGTATTTGAATATCTTCG+AGG 0.513125 1_2:-71492215 Msa0089820:CDS
GCTGCTGCTTCAAAGGATCC+AGG 0.513394 1_2:-71488635 Msa0089820:CDS
ATGTACCAGGAGAAAGATGA+AGG 0.513743 1_2:-71488998 Msa0089820:intron
TGATGTGTCCTGGAAGGAAA+AGG 0.513904 1_2:-71484583 Msa0089820:intron
CAGCAGCCTCAAATCCACTA+AGG 0.514190 1_2:+71488651 None:intergenic
ATTTGGAGGTTCTGTCGTCA+GGG 0.526347 1_2:+71492315 None:intergenic
AGCAATTGCTTTGGATGTCA+AGG 0.535720 1_2:-71489680 Msa0089820:CDS
GCACTTGCTCATAGAAATCC+AGG 0.536136 1_2:+71484381 None:intergenic
ATTGCTTTGGATGTCAAGGA+TGG 0.539541 1_2:-71489676 Msa0089820:CDS
ATAGAGCTCTAGCAGTAGAC+GGG 0.546155 1_2:-71486362 Msa0089820:CDS
TCAAATACTGCTCGTTGCGT+AGG 0.549837 1_2:+71492227 None:intergenic
TCTATGGTAACTGTTCTGTA+TGG 0.559486 1_2:+71486405 None:intergenic
AATAGAGCTCTAGCAGTAGA+CGG 0.559874 1_2:-71486363 Msa0089820:CDS
TGTCAATTTACTTGACAATG+TGG 0.565680 1_2:-71488582 Msa0089820:CDS
TTATGGTGTACGTCAGGATG+TGG 0.566091 1_2:-71485452 Msa0089820:intron
AACCAAGCATCTGCAAGAGA+TGG 0.566217 1_2:+71492119 None:intergenic
GTTATTCTTAATCAGGAGTG+AGG 0.569424 1_2:-71486334 Msa0089820:CDS
AGGTCTCAACGCTGCAGAGG+AGG 0.569792 1_2:-71488615 Msa0089820:CDS
GAGGAGAGTGAGAATGAGAT+CGG 0.572059 1_2:+71492280 None:intergenic
AGCTCTAGCAGTAGACGGGA+AGG 0.584112 1_2:-71486358 Msa0089820:CDS
CTTCTGGAGGAACGGAATCG+AGG 0.587041 1_2:+71492261 None:intergenic
ACATCAACGTCACGAAAACA+AGG 0.587953 1_2:+71484600 None:intergenic
TTGCTTTGGATGTCAAGGAT+GGG 0.590474 1_2:-71489675 Msa0089820:CDS
ATATCTAGAGAACTATGATA+GGG 0.601068 1_2:-71488675 Msa0089820:CDS
ATGTCAAGGATGGGAACTCT+TGG 0.601935 1_2:-71489666 Msa0089820:CDS
CAATGTGGACAATCTGTTGA+GGG 0.603379 1_2:-71488567 Msa0089820:intron
AGCAGCCTCAAATCCACTAA+GGG 0.606061 1_2:+71488652 None:intergenic
TACCATAGACCTTCTGTCAG+AGG 0.606220 1_2:-71486391 Msa0089820:CDS
TGAAAGCATTCAACATGCCA+AGG 0.607329 1_2:-71489704 Msa0089820:CDS
TATTAAGACCCTCTGACAGA+AGG 0.607470 1_2:+71486382 None:intergenic
ACCATAGACCTTCTGTCAGA+GGG 0.609970 1_2:-71486390 Msa0089820:CDS
TCCAGGTCTCAACGCTGCAG+AGG 0.614379 1_2:-71488618 Msa0089820:CDS
TTATTCTTAATCAGGAGTGA+GGG 0.616578 1_2:-71486333 Msa0089820:CDS
GAGATGGAGAATTCAGGCAG+CGG 0.643588 1_2:-71492431 Msa0089820:CDS
AAGAAGGTAAAGTTCGTCAG+TGG 0.644341 1_2:+71492361 None:intergenic
AATGTCATCCAGATTAAAGG+AGG 0.656874 1_2:-71484645 Msa0089820:intron
TGACGTTGATGTGTCCTGGA+AGG 0.663851 1_2:-71484589 Msa0089820:CDS
TGTACCAGGAGAAAGATGAA+GGG 0.665997 1_2:-71488997 Msa0089820:intron
ACAATGTGGACAATCTGTTG+AGG 0.676219 1_2:-71488568 Msa0089820:CDS
GATGTACGAATAGCTTGCTG+AGG 0.687153 1_2:+71484335 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTAAATGTAAATTTTAAA+AGG + chr1_2:71487229-71487248 None:intergenic 10.0%
!!! ATCTTTTTTTAATAAATAAC+CGG - chr1_2:71487451-71487470 Msa0089820:intron 10.0%
!!! TTTCTTTTAAAAGAAAAAAT+TGG + chr1_2:71488340-71488359 None:intergenic 10.0%
!!! ATTTTTTCTTTTAAAAGAAA+TGG - chr1_2:71488340-71488359 Msa0089820:intron 10.0%
!!! TTTTTTTTTTAAGTTCTTTT+GGG + chr1_2:71488863-71488882 None:intergenic 10.0%
!!! TTAATGAATGATTTTAATAA+TGG - chr1_2:71489338-71489357 Msa0089820:intron 10.0%
!!! AAATCAAGAATAATTTTTTA+AGG + chr1_2:71490999-71491018 None:intergenic 10.0%
!! TACTTATTGTAAAAAAATAA+TGG - chr1_2:71491446-71491465 Msa0089820:intron 10.0%
!!! TATTTTCTAAAATAAAAGTT+TGG - chr1_2:71491993-71492012 Msa0089820:intron 10.0%
!!! ATTTTCTAAAATAAAAGTTT+GGG - chr1_2:71491994-71492013 Msa0089820:intron 10.0%
!!! TAGAATCTATGAATTTTTTA+TGG - chr1_2:71485124-71485143 Msa0089820:intron 15.0%
!! AATATGAATATTGAAAATCT+AGG - chr1_2:71485536-71485555 Msa0089820:intron 15.0%
!! AAAAAAAATAAAGGTTAAAG+CGG + chr1_2:71485736-71485755 None:intergenic 15.0%
!! GTAGATCTTAAAAAAAATAA+AGG + chr1_2:71485745-71485764 None:intergenic 15.0%
!!! TTAGCATACATTTTATATAA+AGG - chr1_2:71487881-71487900 Msa0089820:intron 15.0%
!! TATTCCTTTATATAAAACAT+GGG + chr1_2:71487951-71487970 None:intergenic 15.0%
!! TTATTCCTTTATATAAAACA+TGG + chr1_2:71487952-71487971 None:intergenic 15.0%
!!! CTTTTTTTTTTAAGTTCTTT+TGG + chr1_2:71488864-71488883 None:intergenic 15.0%
!! TAATTGAGTAAAAATAGTTA+AGG - chr1_2:71489256-71489275 Msa0089820:intron 15.0%
!! TCAAATGATTAATATTTACA+GGG - chr1_2:71490059-71490078 Msa0089820:intron 15.0%
!!! TTTTGAATTTAACAAATACA+GGG - chr1_2:71490801-71490820 Msa0089820:intron 15.0%
!!! AATTATTCTTTTGTTATTGT+TGG + chr1_2:71490858-71490877 None:intergenic 15.0%
!! ATTTAAATTAATCATCAAAC+AGG + chr1_2:71490881-71490900 None:intergenic 15.0%
!!! ACAAATGAAAGTTATTATTT+TGG + chr1_2:71491060-71491079 None:intergenic 15.0%
!!! TTTTCTAAAATAAAAGTTTG+GGG - chr1_2:71491995-71492014 Msa0089820:intron 15.0%
!! TGATAACTATAACATTAATA+AGG + chr1_2:71492038-71492057 None:intergenic 15.0%
!! GAAATAGAAATAATAGCATT+TGG + chr1_2:71484878-71484897 None:intergenic 20.0%
!!! ATTAAGGATTAAACTTGTTT+TGG + chr1_2:71484971-71484990 None:intergenic 20.0%
!! TTAATCTTAGTAAAGCTTAT+GGG - chr1_2:71484986-71485005 Msa0089820:intron 20.0%
!! CTTAAACTAATTGTATTTAG+TGG - chr1_2:71485047-71485066 Msa0089820:intron 20.0%
!!! AGTTATTTTTTTACATAAGC+TGG - chr1_2:71485088-71485107 Msa0089820:intron 20.0%
!!! GCCATTTTTTTTTTAAAACT+CGG - chr1_2:71485287-71485306 Msa0089820:intron 20.0%
!!! ACCGAGTTTTAAAAAAAAAA+TGG + chr1_2:71485291-71485310 None:intergenic 20.0%
!!! TTTTTTTAAAACTCGGTATT+TGG - chr1_2:71485294-71485313 Msa0089820:intron 20.0%
!! TTAGGAATATTTATACTAAC+CGG - chr1_2:71485836-71485855 Msa0089820:intron 20.0%
!! CTTTCTACAATTATAAAATC+TGG + chr1_2:71486009-71486028 None:intergenic 20.0%
!! AGATTGATTAATTGTTGAAA+AGG - chr1_2:71486110-71486129 Msa0089820:intron 20.0%
!! ATTAAATAAGGATATGTTAG+TGG + chr1_2:71486313-71486332 None:intergenic 20.0%
!! GAAAGGAAATTCATTAAATA+AGG + chr1_2:71486325-71486344 None:intergenic 20.0%
!! TTCCATCAACTATAATTATT+AGG - chr1_2:71486354-71486373 Msa0089820:CDS 20.0%
!! TCCATCAACTATAATTATTA+GGG - chr1_2:71486355-71486374 Msa0089820:CDS 20.0%
!! TTATGTTGTAATTGAATACA+AGG + chr1_2:71486527-71486546 None:intergenic 20.0%
!! CTATTAATAAGGTTTATGTA+AGG + chr1_2:71486587-71486606 None:intergenic 20.0%
!!! AGTCAACTTTTATTATAGTA+AGG + chr1_2:71486650-71486669 None:intergenic 20.0%
!! TTACTATAATAAAAGTTGAC+TGG - chr1_2:71486649-71486668 Msa0089820:intron 20.0%
!! TAAATCTAATAGTAGTGAAT+AGG - chr1_2:71487671-71487690 Msa0089820:intron 20.0%
!! AGGCTTATTATTTAAAAATG+TGG - chr1_2:71487691-71487710 Msa0089820:intron 20.0%
!! ACATAATGAAGTAGAATAAA+AGG + chr1_2:71487822-71487841 None:intergenic 20.0%
!! AAGGAATAATATTGAATCTT+TGG - chr1_2:71487900-71487919 Msa0089820:intron 20.0%
!! TCAAATGGTTAATATTTACA+GGG + chr1_2:71488496-71488515 None:intergenic 20.0%
!! GTTTCAAGATTTAAGAAAAA+TGG + chr1_2:71488834-71488853 None:intergenic 20.0%
!!! TTTTTACTCAATTAGATATC+AGG + chr1_2:71489250-71489269 None:intergenic 20.0%
!! AAAATAGTTAAGGACTTAAT+TGG - chr1_2:71489266-71489285 Msa0089820:intron 20.0%
!! AAATAGTTAAGGACTTAATT+GGG - chr1_2:71489267-71489286 Msa0089820:intron 20.0%
!!! ATGATTTTAATAATGGTTGT+TGG - chr1_2:71489345-71489364 Msa0089820:intron 20.0%
!! CTCAAATGATTAATATTTAC+AGG - chr1_2:71490058-71490077 Msa0089820:intron 20.0%
!! AATTGAAAAAGACATAGTAT+AGG + chr1_2:71490648-71490667 None:intergenic 20.0%
!!! CTTTTGAATTTAACAAATAC+AGG - chr1_2:71490800-71490819 Msa0089820:intron 20.0%
!! ATATGCAAGCATATATTTAT+TGG - chr1_2:71490907-71490926 Msa0089820:intron 20.0%
!! TAAGGAACATAATTATACAA+AGG + chr1_2:71490981-71491000 None:intergenic 20.0%
!!! GGTATGTATAATTTTTGAAA+AGG + chr1_2:71491025-71491044 None:intergenic 20.0%
!! AAAATATCAATCATGTATGT+TGG - chr1_2:71491088-71491107 Msa0089820:intron 20.0%
!! TCTCAAGAAATTAACATAAA+GGG + chr1_2:71491150-71491169 None:intergenic 20.0%
!! TTCTCAAGAAATTAACATAA+AGG + chr1_2:71491151-71491170 None:intergenic 20.0%
!! TGTAAAAAAATAATGGTAGT+AGG - chr1_2:71491453-71491472 Msa0089820:intron 20.0%
!! TTGAAAAGCTATAAAATAAG+TGG + chr1_2:71491841-71491860 None:intergenic 20.0%
!! AAAATAATATTCAACATGCT+TGG + chr1_2:71491979-71491998 None:intergenic 20.0%
!! TATAACATTAATAAGGAAAG+GGG + chr1_2:71492031-71492050 None:intergenic 20.0%
!! CTATAACATTAATAAGGAAA+GGG + chr1_2:71492032-71492051 None:intergenic 20.0%
!! ACTATAACATTAATAAGGAA+AGG + chr1_2:71492033-71492052 None:intergenic 20.0%
!!! TGATTTGTTTTATTACAACA+GGG + chr1_2:71492264-71492283 None:intergenic 20.0%
!!! ATGATTTGTTTTATTACAAC+AGG + chr1_2:71492265-71492284 None:intergenic 20.0%
!! AACAAATCATATTCTGATTA+AGG - chr1_2:71492275-71492294 Msa0089820:CDS 20.0%
!!! TTTTTAAATGTACATGAATG+AGG + chr1_2:71492311-71492330 None:intergenic 20.0%
! TATGTTTAGGAAACTGTATT+TGG - chr1_2:71484641-71484660 Msa0089820:intron 25.0%
! TTGTAATAGTGTGCTTATTT+AGG - chr1_2:71484802-71484821 Msa0089820:intron 25.0%
! TTATGATTGAAGAAACATGA+TGG - chr1_2:71484834-71484853 Msa0089820:intron 25.0%
! ATAGAAATAATAGCATTTGG+AGG + chr1_2:71484875-71484894 None:intergenic 25.0%
! CATAAGCTTTACTAAGATTA+AGG + chr1_2:71484987-71485006 None:intergenic 25.0%
! CTTAATCTTAGTAAAGCTTA+TGG - chr1_2:71484985-71485004 Msa0089820:intron 25.0%
!! AGTGGTTTGTATTTATTTGT+CGG - chr1_2:71485065-71485084 Msa0089820:intron 25.0%
!! TTTTGTGGTAATTTACTTTG+AGG - chr1_2:71485260-71485279 Msa0089820:intron 25.0%
! TAAATGGTATTAACCCATTT+GGG + chr1_2:71485487-71485506 None:intergenic 25.0%
! ATAAATGGTATTAACCCATT+TGG + chr1_2:71485488-71485507 None:intergenic 25.0%
! GTTACAGAAGTTACTTATAT+AGG - chr1_2:71486140-71486159 Msa0089820:intron 25.0%
! ACCCTAATAATTATAGTTGA+TGG + chr1_2:71486359-71486378 None:intergenic 25.0%
!!! ATTAGTTGTGTTGATTTCAA+TGG + chr1_2:71486408-71486427 None:intergenic 25.0%
!!! AAGTGACATTTATTTTGAGA+AGG - chr1_2:71486457-71486476 Msa0089820:intron 25.0%
! TGTAATTGAATACAAGGAAT+AGG + chr1_2:71486521-71486540 None:intergenic 25.0%
! TTACAACATAATTCTAGACT+AGG - chr1_2:71486536-71486555 Msa0089820:intron 25.0%
! ATAAAAGAGATAAAGAAACC+TGG - chr1_2:71486680-71486699 Msa0089820:intron 25.0%
! ATGTAAGAATGAAGTTGAAT+GGG - chr1_2:71486849-71486868 Msa0089820:intron 25.0%
! TTGGTAAAGCTATACTAAAT+AGG + chr1_2:71486906-71486925 None:intergenic 25.0%
! CAACACATAAAAGAATAGTA+GGG + chr1_2:71486942-71486961 None:intergenic 25.0%
! ACAACACATAAAAGAATAGT+AGG + chr1_2:71486943-71486962 None:intergenic 25.0%
! TGATGATTGAAATTGAATCT+AGG - chr1_2:71487295-71487314 Msa0089820:intron 25.0%
! AGATCTAGCACAATATTAAA+AGG + chr1_2:71487435-71487454 None:intergenic 25.0%
!!! AAATAACCGGCAATATTTTT+TGG - chr1_2:71487464-71487483 Msa0089820:intron 25.0%
!!! TTTTAAAGAATGTGAAAGTC+TGG + chr1_2:71487585-71487604 None:intergenic 25.0%
! ATTAAAGTAAAAGTCAGGAT+TGG + chr1_2:71487774-71487793 None:intergenic 25.0%
!!! CTGTCTAAATAATTTGTTAC+AGG - chr1_2:71488033-71488052 Msa0089820:intron 25.0%
! AATATCTAGAGAACTATGAT+AGG - chr1_2:71488062-71488081 Msa0089820:intron 25.0%
! ATATCTAGAGAACTATGATA+GGG - chr1_2:71488063-71488082 Msa0089820:intron 25.0%
!! TTTTCAATAACTTGATATCC+TGG - chr1_2:71488274-71488293 Msa0089820:intron 25.0%
!!! CAGCTTGTTTATACATTTTA+GGG - chr1_2:71488393-71488412 Msa0089820:intron 25.0%
! AATATTTACAGGGACAAAAT+GGG + chr1_2:71490069-71490088 None:intergenic 25.0%
! TAATATTTACAGGGACAAAA+TGG + chr1_2:71490068-71490087 None:intergenic 25.0%
! CTCAAATGGTTAATATTTAC+AGG + chr1_2:71488497-71488516 None:intergenic 25.0%
! AATTAGGATGAAATCTCAAA+TGG + chr1_2:71490044-71490063 None:intergenic 25.0%
!! CTCAGCAAAATTTTGTAATT+AGG + chr1_2:71490028-71490047 None:intergenic 25.0%
!! CTAATTACAAAATTTTGCTG+AGG - chr1_2:71488525-71488544 Msa0089820:intron 25.0%
! TACGAAATTGGAAGATTATT+AGG + chr1_2:71489165-71489184 None:intergenic 25.0%
! TCAGAAAATACAGATAATTC+TGG - chr1_2:71489737-71489756 Msa0089820:intron 25.0%
!! CATTAAAATGTCAGTTGATA+AGG - chr1_2:71489769-71489788 Msa0089820:intron 25.0%
!! CTAATTACAAAATTTTGCTG+AGG + chr1_2:71488525-71488544 None:intergenic 25.0%
!! CTCAGCAAAATTTTGTAATT+AGG - chr1_2:71490028-71490047 Msa0089820:intron 25.0%
! TAATATTTACAGGGACAAAA+TGG - chr1_2:71490068-71490087 Msa0089820:intron 25.0%
! AATATTTACAGGGACAAAAT+GGG - chr1_2:71490069-71490088 Msa0089820:intron 25.0%
! CCTGTACATAATAAAATGTA+GGG + chr1_2:71490162-71490181 None:intergenic 25.0%
! ACCTGTACATAATAAAATGT+AGG + chr1_2:71490163-71490182 None:intergenic 25.0%
! AATAGCGAAAAATATGTTTC+TGG + chr1_2:71490457-71490476 None:intergenic 25.0%
! AAATAAGGTTGAAAAGGATA+AGG + chr1_2:71490726-71490745 None:intergenic 25.0%
!! CAAGCATATATTTATTGGTT+AGG - chr1_2:71490912-71490931 Msa0089820:intron 25.0%
! GAACATAATTATACAAAGGA+GGG + chr1_2:71490977-71490996 None:intergenic 25.0%
! AAGAAATTAACATAAAGGGA+AGG + chr1_2:71491146-71491165 None:intergenic 25.0%
!! TGCTTTGTTCTTTCAATTTA+TGG - chr1_2:71491269-71491288 Msa0089820:intron 25.0%
! AAGAGTAAAATTCACTATCT+TGG - chr1_2:71491375-71491394 Msa0089820:intron 25.0%
! ACTATCTTGGATAAATTTCT+AGG - chr1_2:71491388-71491407 Msa0089820:intron 25.0%
! CTATCTTGGATAAATTTCTA+GGG - chr1_2:71491389-71491408 Msa0089820:intron 25.0%
! TTTGTCTACTATAACTTGAT+GGG + chr1_2:71491694-71491713 None:intergenic 25.0%
! ATTTGTCTACTATAACTTGA+TGG + chr1_2:71491695-71491714 None:intergenic 25.0%
!!! GTTCATTTTTCTCTCTTTAT+TGG - chr1_2:71491724-71491743 Msa0089820:intron 25.0%
!!! ATCCTTATTTTCTCTTTGAT+TGG - chr1_2:71491881-71491900 Msa0089820:intron 25.0%
! TTCCAATCAAAGAGAAAATA+AGG + chr1_2:71491886-71491905 None:intergenic 25.0%
! ATAACATTAATAAGGAAAGG+GGG + chr1_2:71492030-71492049 None:intergenic 25.0%
! GTTATCAATTGAAGAATCAA+TGG - chr1_2:71492051-71492070 Msa0089820:intron 25.0%
TCAGCTTCTTTCTTATATTC+AGG + chr1_2:71484568-71484587 None:intergenic 30.0%
GGAAACTGTATTTGGAAAAA+AGG - chr1_2:71484649-71484668 Msa0089820:intron 30.0%
! CCTTATTTAATGCAAGATTG+AGG + chr1_2:71484699-71484718 None:intergenic 30.0%
CCTCAATCTTGCATTAAATA+AGG - chr1_2:71484696-71484715 Msa0089820:intron 30.0%
GCATTATTGTAATACGTATG+AGG - chr1_2:71484741-71484760 Msa0089820:intron 30.0%
ATGAATATGATCTTAACTCC+AGG - chr1_2:71484908-71484927 Msa0089820:intron 30.0%
ATGTTACGTAATTTCTGTCA+TGG - chr1_2:71485147-71485166 Msa0089820:intron 30.0%
!! TAGTGTTGACAACAATAGTT+TGG - chr1_2:71485230-71485249 Msa0089820:intron 30.0%
!! ATAGCATACTGGCTTAAAAT+GGG + chr1_2:71485368-71485387 None:intergenic 30.0%
!!! TAGGAAATTACTTTTTCCTC+CGG - chr1_2:71485555-71485574 Msa0089820:intron 30.0%
CAATATCTATCATCACTTGT+AGG + chr1_2:71485632-71485651 None:intergenic 30.0%
CTACAAGTGATGATAGATAT+TGG - chr1_2:71485630-71485649 Msa0089820:intron 30.0%
! TAGATATTGGTTGTTTATGC+AGG - chr1_2:71485643-71485662 Msa0089820:intron 30.0%
! AGATATTGGTTGTTTATGCA+GGG - chr1_2:71485644-71485663 Msa0089820:intron 30.0%
TGACAAAGAATCTTCTTGTT+AGG + chr1_2:71485671-71485690 None:intergenic 30.0%
! AAGAAGTATGTCTCAAAGTA+AGG - chr1_2:71485706-71485725 Msa0089820:intron 30.0%
!! GTTTTTCAGTTGTCCTAATA+TGG - chr1_2:71485766-71485785 Msa0089820:intron 30.0%
ATATAACCAAATCATCTGAC+CGG + chr1_2:71485858-71485877 None:intergenic 30.0%
TGTTATGATTGTGTTAGAAC+TGG - chr1_2:71486058-71486077 Msa0089820:intron 30.0%
TGATGGAATAGTTAAGTGAA+AGG + chr1_2:71486342-71486361 None:intergenic 30.0%
!!! TGACATTTATTTTGAGAAGG+AGG - chr1_2:71486460-71486479 Msa0089820:intron 30.0%
!!! GACATTTATTTTGAGAAGGA+GGG - chr1_2:71486461-71486480 Msa0089820:intron 30.0%
ATAGGAGAAGATGATTAGAA+GGG + chr1_2:71486503-71486522 None:intergenic 30.0%
AATAGGAGAAGATGATTAGA+AGG + chr1_2:71486504-71486523 None:intergenic 30.0%
AACATAATTCTAGACTAGGT+TGG - chr1_2:71486540-71486559 Msa0089820:intron 30.0%
TATGCGGAAAAATGAAAAAC+TGG - chr1_2:71486790-71486809 Msa0089820:intron 30.0%
ATGCGGAAAAATGAAAAACT+GGG - chr1_2:71486791-71486810 Msa0089820:intron 30.0%
CATGTAAGAATGAAGTTGAA+TGG - chr1_2:71486848-71486867 Msa0089820:intron 30.0%
TGTAAGAATGAAGTTGAATG+GGG - chr1_2:71486850-71486869 Msa0089820:intron 30.0%
TAAAAGAATAGTAGGGTCAT+AGG + chr1_2:71486935-71486954 None:intergenic 30.0%
TTCAATCATCAGTACATTTC+AGG + chr1_2:71487286-71487305 None:intergenic 30.0%
!! GACAAGCATTAAAAGCATTA+AGG + chr1_2:71487362-71487381 None:intergenic 30.0%
TGAAAGCCAAAAAATATTGC+CGG + chr1_2:71487473-71487492 None:intergenic 30.0%
ATCTTCTTGACAGATAATCT+TGG - chr1_2:71487512-71487531 Msa0089820:intron 30.0%
AAAATGCTGTAAGTATGAAG+AGG - chr1_2:71487612-71487631 Msa0089820:intron 30.0%
TATTGACCAAACATTTGGTT+AGG + chr1_2:71487721-71487740 None:intergenic 30.0%
GTACATATTGACCAAACATT+TGG + chr1_2:71487726-71487745 None:intergenic 30.0%
GCACTATTAAAGTAAAAGTC+AGG + chr1_2:71487779-71487798 None:intergenic 30.0%
CCTTTATATAAAACATGGGA+AGG + chr1_2:71487947-71487966 None:intergenic 30.0%
! CCTTCCCATGTTTTATATAA+AGG - chr1_2:71487944-71487963 Msa0089820:intron 30.0%
ATAGTGCACATATTGTGTAT+TGG - chr1_2:71487994-71488013 Msa0089820:intron 30.0%
TGTCAATTTACTTGACAATG+TGG - chr1_2:71488156-71488175 Msa0089820:intron 30.0%
!!! TAGTCATCACCTTATTTTGA+GGG - chr1_2:71488367-71488386 Msa0089820:intron 30.0%
!! GCAGCTTGTTTATACATTTT+AGG - chr1_2:71488392-71488411 Msa0089820:intron 30.0%
TCAAATGGCCTATAATTACA+GGG + chr1_2:71490119-71490138 None:intergenic 30.0%
TTCAAATGGCCTATAATTAC+AGG + chr1_2:71490118-71490137 None:intergenic 30.0%
! ATTACAAAATTTTGCTGAGG+TGG - chr1_2:71488528-71488547 Msa0089820:intron 30.0%
!!! CTGTTTAATGGTTTTTTGTC+AGG - chr1_2:71488573-71488592 Msa0089820:CDS 30.0%
! ATTTTTGCCCTTAATGAATC+TGG - chr1_2:71488625-71488644 Msa0089820:CDS 30.0%
! TTTTTGCCCTTAATGAATCT+GGG - chr1_2:71488626-71488645 Msa0089820:CDS 30.0%
!!! TTTAAGTTCTTTTGGGACAA+AGG + chr1_2:71488856-71488875 None:intergenic 30.0%
! AAGAAAGTTGTTGTTGTTCA+TGG + chr1_2:71488894-71488913 None:intergenic 30.0%
CAACTTTCTTCTTTCCAAAT+AGG - chr1_2:71488904-71488923 Msa0089820:intron 30.0%
TTCCAAATAGGTTCAAAGAA+TGG - chr1_2:71488916-71488935 Msa0089820:intron 30.0%
! CAATTTTCCAAAGCTATGAA+AGG - chr1_2:71488991-71489010 Msa0089820:CDS 30.0%
! AACTGCGAATTGAATTTTTG+CGG - chr1_2:71489085-71489104 Msa0089820:intron 30.0%
ATTGGAAGATTATTAGGTGT+TGG + chr1_2:71489159-71489178 None:intergenic 30.0%
TTGTTTGGGAAATACGAAAT+TGG + chr1_2:71489177-71489196 None:intergenic 30.0%
! ATTACAAAATTTTGCTGAGG+TGG + chr1_2:71488528-71488547 None:intergenic 30.0%
TTCAAATGGCCTATAATTAC+AGG - chr1_2:71490118-71490137 Msa0089820:intron 30.0%
TCAAATGGCCTATAATTACA+GGG - chr1_2:71490119-71490138 Msa0089820:intron 30.0%
! CCCTACATTTTATTATGTAC+AGG - chr1_2:71490159-71490178 Msa0089820:intron 30.0%
TTATTCTTAATCAGGAGTGA+GGG - chr1_2:71490405-71490424 Msa0089820:intron 30.0%
ATTTCAAAACTCCAGAAAGA+GGG + chr1_2:71490525-71490544 None:intergenic 30.0%
!!! CCATTACTTTTAAAACTGGT+TGG + chr1_2:71490560-71490579 None:intergenic 30.0%
!!! CCAACCAGTTTTAAAAGTAA+TGG - chr1_2:71490557-71490576 Msa0089820:intron 30.0%
!!! CACTCCATTACTTTTAAAAC+TGG + chr1_2:71490564-71490583 None:intergenic 30.0%
CTGGAAAAATAAGGTTGAAA+AGG + chr1_2:71490732-71490751 None:intergenic 30.0%
!!! TTTCAACCTTATTTTTCCAG+TGG - chr1_2:71490732-71490751 Msa0089820:intron 30.0%
!!! TTCAACCTTATTTTTCCAGT+GGG - chr1_2:71490733-71490752 Msa0089820:intron 30.0%
!! TTATTTTTCCAGTGGGTATT+GGG - chr1_2:71490740-71490759 Msa0089820:intron 30.0%
GTATCTAATGCAACAAAGAA+AGG - chr1_2:71490937-71490956 Msa0089820:intron 30.0%
AATTATACAAAGGAGGGAAA+AGG + chr1_2:71490971-71490990 None:intergenic 30.0%
GGAACATAATTATACAAAGG+AGG + chr1_2:71490978-71490997 None:intergenic 30.0%
!!! TTATTTTGGAACAATCAGTC+AGG + chr1_2:71491046-71491065 None:intergenic 30.0%
ATCAATCATGTATGTTGGTA+TGG - chr1_2:71491093-71491112 Msa0089820:intron 30.0%
TCAATCATGTATGTTGGTAT+GGG - chr1_2:71491094-71491113 Msa0089820:intron 30.0%
TTGAAAGAACAAAGCAAGTT+TGG + chr1_2:71491265-71491284 None:intergenic 30.0%
! ACTCTTTGAAAAACGTTACT+GGG + chr1_2:71491361-71491380 None:intergenic 30.0%
! TACTCTTTGAAAAACGTTAC+TGG + chr1_2:71491362-71491381 None:intergenic 30.0%
CTTCAGAATTGCGAAATATA+GGG - chr1_2:71491647-71491666 Msa0089820:intron 30.0%
TTGTCTACTATAACTTGATG+GGG + chr1_2:71491693-71491712 None:intergenic 30.0%
!! ATATAATAGAAGCACTTGCT+TGG - chr1_2:71491772-71491791 Msa0089820:intron 30.0%
! TATAGCTTTTCAAAGTAGCT+TGG - chr1_2:71491848-71491867 Msa0089820:intron 30.0%
AATCTGGATGACATTAACAA+GGG + chr1_2:71492088-71492107 None:intergenic 30.0%
TAATCTGGATGACATTAACA+AGG + chr1_2:71492089-71492108 None:intergenic 30.0%
GTTAATGTCATCCAGATTAA+AGG - chr1_2:71492090-71492109 Msa0089820:CDS 30.0%
!! AGAAGAAGAAGAAGCGTTAT+TGG - chr1_2:71484339-71484358 Msa0089820:CDS 35.0%
GGAAAAATGTATCACGAAGA+AGG + chr1_2:71484396-71484415 None:intergenic 35.0%
!! TTTTCTTTCTTCTGGAGGAA+CGG + chr1_2:71484488-71484507 None:intergenic 35.0%
! GTAGGTGATTTTCTTTCTTC+TGG + chr1_2:71484496-71484515 None:intergenic 35.0%
GCAGTATTTGAATATCTTCG+AGG - chr1_2:71484523-71484542 Msa0089820:intron 35.0%
! TGTGCTTATTTAGGCTTTTG+AGG - chr1_2:71484811-71484830 Msa0089820:intron 35.0%
ATCTTAACTCCAGGAACATT+TGG - chr1_2:71484917-71484936 Msa0089820:intron 35.0%
ACTCTAATACCAAATGTTCC+TGG + chr1_2:71484929-71484948 None:intergenic 35.0%
TCTTAGTAAAGCTTATGGGA+CGG - chr1_2:71484990-71485009 Msa0089820:intron 35.0%
ATGTTTGACACACATGTTCA+CGG + chr1_2:71485025-71485044 None:intergenic 35.0%
!! GACAACAATAGTTTGGTTCT+TGG - chr1_2:71485237-71485256 Msa0089820:intron 35.0%
!!! TAGTTTGGTTCTTGGTTTTG+TGG - chr1_2:71485245-71485264 Msa0089820:intron 35.0%
!! TAGCATACTGGCTTAAAATG+GGG + chr1_2:71485367-71485386 None:intergenic 35.0%
!! CATAGCATACTGGCTTAAAA+TGG + chr1_2:71485369-71485388 None:intergenic 35.0%
TTAAGCCAGTATGCTATGTA+TGG - chr1_2:71485371-71485390 Msa0089820:intron 35.0%
ATAAAGTGAAACCAAGACTC+CGG + chr1_2:71485584-71485603 None:intergenic 35.0%
GTCTTGGTTTCACTTTATTC+TGG - chr1_2:71485586-71485605 Msa0089820:intron 35.0%
TTTCAGTTGTCCTAATATGG+CGG - chr1_2:71485769-71485788 Msa0089820:intron 35.0%
AAATCAGATTCCGCCATATT+AGG + chr1_2:71485782-71485801 None:intergenic 35.0%
TTCCTAAGATCAGTGAAGAA+AGG + chr1_2:71485823-71485842 None:intergenic 35.0%
! AGTGAGATTTTCTCTAGCTA+CGG + chr1_2:71485912-71485931 None:intergenic 35.0%
GAGTCGGCAATTATAAAATC+TGG + chr1_2:71485941-71485960 None:intergenic 35.0%
ATTAATTGTTGAAAAGGCCC+AGG - chr1_2:71486116-71486135 Msa0089820:intron 35.0%
AAGTAACTTCTGTAACTCCT+GGG + chr1_2:71486136-71486155 None:intergenic 35.0%
TAAGTAACTTCTGTAACTCC+TGG + chr1_2:71486137-71486156 None:intergenic 35.0%
CAGAAGTTACTTATATAGGC+AGG - chr1_2:71486144-71486163 Msa0089820:intron 35.0%
TACTTATATAGGCAGGAGTT+AGG - chr1_2:71486151-71486170 Msa0089820:intron 35.0%
ACGTGACAGTTATTATGAGA+CGG + chr1_2:71486222-71486241 None:intergenic 35.0%
!!! TGTCACTTTTGTATTGTGCA+CGG + chr1_2:71486445-71486464 None:intergenic 35.0%
TAGGAGAAGATGATTAGAAG+GGG + chr1_2:71486502-71486521 None:intergenic 35.0%
GGGTAGGCATTCTATTAATA+AGG + chr1_2:71486598-71486617 None:intergenic 35.0%
AAAGAGATAAAGAAACCTGG+TGG - chr1_2:71486683-71486702 Msa0089820:intron 35.0%
GTGTGCATGATCAAATTCTA+GGG + chr1_2:71486767-71486786 None:intergenic 35.0%
TGTGTGCATGATCAAATTCT+AGG + chr1_2:71486768-71486787 None:intergenic 35.0%
GGAAAAATGAAAAACTGGGA+AGG - chr1_2:71486795-71486814 Msa0089820:intron 35.0%
AGAAACAACTGAGTTGCATA+AGG + chr1_2:71487261-71487280 None:intergenic 35.0%
! GGAAACCAGTTATTCTTTTC+TGG - chr1_2:71487316-71487335 Msa0089820:intron 35.0%
ATTAAGGTAGCAAGTCTCTT+GGG + chr1_2:71487346-71487365 None:intergenic 35.0%
TCAGTCACAAACAATGTACA+AGG + chr1_2:71487384-71487403 None:intergenic 35.0%
AGAAGATCAGATAGTCAGAT+GGG + chr1_2:71487499-71487518 None:intergenic 35.0%
AAGAAGATCAGATAGTCAGA+TGG + chr1_2:71487500-71487519 None:intergenic 35.0%
!!! CTGACAAGTTTTTTTGTCAC+TGG - chr1_2:71487545-71487564 Msa0089820:intron 35.0%
!!! ACAAGTTTTTTTGTCACTGG+AGG - chr1_2:71487548-71487567 Msa0089820:intron 35.0%
!!! TTTTTTTGTCACTGGAGGTT+GGG - chr1_2:71487553-71487572 Msa0089820:intron 35.0%
ATGTTTGGTCAATATGTACC+AGG - chr1_2:71487727-71487746 Msa0089820:intron 35.0%
GGATCAAATGCAACTTACAA+TGG + chr1_2:71487801-71487820 None:intergenic 35.0%
!!! GTAGTCATCACCTTATTTTG+AGG - chr1_2:71488366-71488385 Msa0089820:intron 35.0%
! CTTTTCGTCCCTGTAATTAT+AGG - chr1_2:71488425-71488444 Msa0089820:intron 35.0%
TTCAGGGACGAAAATTCAAA+TGG + chr1_2:71488451-71488470 None:intergenic 35.0%
GATGAAAATGGTTGTTGAAG+TGG + chr1_2:71488789-71488808 None:intergenic 35.0%
CTCCATTCTTTGAACCTATT+TGG + chr1_2:71488921-71488940 None:intergenic 35.0%
TCAAAGAATGGAGTCGATAA+CGG - chr1_2:71488928-71488947 Msa0089820:intron 35.0%
AAATCAGCCTTTCATAGCTT+TGG + chr1_2:71489001-71489020 None:intergenic 35.0%
TTCTTCAAAACAGCAGCAAA+AGG - chr1_2:71489031-71489050 Msa0089820:intron 35.0%
TCTTCAAAACAGCAGCAAAA+GGG - chr1_2:71489032-71489051 Msa0089820:intron 35.0%
! AAAAGGGAATTGGGTTTTTG+CGG - chr1_2:71489048-71489067 Msa0089820:intron 35.0%
! TTGGAAGTGTATTTGAGAGA+AGG - chr1_2:71489364-71489383 Msa0089820:intron 35.0%
GTGTATTTGAGAGAAGGAAA+AGG - chr1_2:71489370-71489389 Msa0089820:intron 35.0%
AACCACTATCTAGATGCAAA+CGG + chr1_2:71489652-71489671 None:intergenic 35.0%
! TTTGCATCTAGATAGTGGTT+CGG - chr1_2:71489652-71489671 Msa0089820:intron 35.0%
TAAACACCAATCTCTCCTAA+AGG + chr1_2:71489692-71489711 None:intergenic 35.0%
CTTCTGATTCTTGTGTTCTA+TGG - chr1_2:71489810-71489829 Msa0089820:intron 35.0%
AGAAGATGAAGCGTAAAAGA+TGG - chr1_2:71489846-71489865 Msa0089820:intron 35.0%
! TTTTTGCCCTTAACGAATCT+GGG + chr1_2:71489929-71489948 None:intergenic 35.0%
! ATTTTTGCCCTTAACGAATC+TGG + chr1_2:71489930-71489949 None:intergenic 35.0%
! CTTTTCGTCCCTGTAATTAT+AGG + chr1_2:71488425-71488444 None:intergenic 35.0%
AAATGTACTACAGATGATGC+TGG + chr1_2:71490254-71490273 None:intergenic 35.0%
GATTCATCATGTCTACATTC+TGG - chr1_2:71490296-71490315 Msa0089820:intron 35.0%
TCTATGGTAACTGTTCTGTA+TGG + chr1_2:71490336-71490355 None:intergenic 35.0%
!! GGAAGGTGTTATTCTTAATC+AGG - chr1_2:71490397-71490416 Msa0089820:intron 35.0%
GTTATTCTTAATCAGGAGTG+AGG - chr1_2:71490404-71490423 Msa0089820:intron 35.0%
GGTTACAAATGCAAGGAAAT+TGG + chr1_2:71490504-71490523 None:intergenic 35.0%
CATTTCAAAACTCCAGAAAG+AGG + chr1_2:71490526-71490545 None:intergenic 35.0%
! AATGGAGTGACTTGATTTTG+TGG - chr1_2:71490575-71490594 Msa0089820:intron 35.0%
! GGGAGGTTTTTAAATGCATT+CGG + chr1_2:71490616-71490635 None:intergenic 35.0%
ACATAGTATAGGCGTATTCA+CGG + chr1_2:71490637-71490656 None:intergenic 35.0%
CAATACCCACTGGAAAAATA+AGG + chr1_2:71490741-71490760 None:intergenic 35.0%
!! CTTATTTTTCCAGTGGGTAT+TGG - chr1_2:71490739-71490758 Msa0089820:intron 35.0%
TGAAAAAAGTGGTTGGGAAA+GGG - chr1_2:71490775-71490794 Msa0089820:intron 35.0%
CAATCATGTATGTTGGTATG+GGG - chr1_2:71491095-71491114 Msa0089820:intron 35.0%
AATCATGTATGTTGGTATGG+GGG - chr1_2:71491096-71491115 Msa0089820:intron 35.0%
TTCAATTTATGGTGTACGTC+AGG - chr1_2:71491280-71491299 Msa0089820:intron 35.0%
ACTTCTAAGCACATGATCTT+TGG - chr1_2:71491517-71491536 Msa0089820:intron 35.0%
! CATGATCTTTGGTGCAATTA+AGG - chr1_2:71491528-71491547 Msa0089820:intron 35.0%
TCCATAAAATCATGTGCTGT+GGG - chr1_2:71491555-71491574 Msa0089820:intron 35.0%
TGTCAAGGTAGACATAAACA+AGG - chr1_2:71491588-71491607 Msa0089820:intron 35.0%
GCGCACTATCATTACATATT+TGG + chr1_2:71491625-71491644 None:intergenic 35.0%
GCTTCAGAATTGCGAAATAT+AGG - chr1_2:71491646-71491665 Msa0089820:intron 35.0%
AGAATTGCGAAATATAGGGT+TGG - chr1_2:71491651-71491670 Msa0089820:intron 35.0%
AATGTCATCCAGATTAAAGG+AGG - chr1_2:71492093-71492112 Msa0089820:CDS 35.0%
! TATGAGCAAGTGCTTGTTAA+TGG - chr1_2:71492367-71492386 Msa0089820:CDS 35.0%
AAGAAGGTAAAGTTCGTCAG+TGG + chr1_2:71484380-71484399 None:intergenic 40.0%
!! ATCGGAGTGTTGTTGCAATT+TGG + chr1_2:71484443-71484462 None:intergenic 40.0%
! GGTGATTTTCTTTCTTCTGG+AGG + chr1_2:71484493-71484512 None:intergenic 40.0%
GCAGATGCTTGGTTATGTTT+AGG - chr1_2:71484628-71484647 Msa0089820:CDS 40.0%
GTGAACATGTGTGTCAAACA+TGG - chr1_2:71485024-71485043 Msa0089820:intron 40.0%
AAAACTCGGTATTTGGCCTA+AGG - chr1_2:71485301-71485320 Msa0089820:intron 40.0%
!! AGCATACTGGCTTAAAATGG+GGG + chr1_2:71485366-71485385 None:intergenic 40.0%
CAAGTCCATACATAGCATAC+TGG + chr1_2:71485379-71485398 None:intergenic 40.0%
CAGTATGCTATGTATGGACT+TGG - chr1_2:71485377-71485396 Msa0089820:intron 40.0%
ATCAAACCTAAGACCTTGAG+AGG - chr1_2:71485422-71485441 Msa0089820:intron 40.0%
TGGTATTAACCCATTTGGGT+TGG + chr1_2:71485483-71485502 None:intergenic 40.0%
GTCCTTTCTTCACTGATCTT+AGG - chr1_2:71485818-71485837 Msa0089820:intron 40.0%
TACTAACCGGTCAGATGATT+TGG - chr1_2:71485849-71485868 Msa0089820:intron 40.0%
TCTAGCTACGGCATAAAGAT+TGG + chr1_2:71485900-71485919 None:intergenic 40.0%
GACAGTTATTATGAGACGGA+GGG + chr1_2:71486218-71486237 None:intergenic 40.0%
TGACAGTTATTATGAGACGG+AGG + chr1_2:71486219-71486238 None:intergenic 40.0%
TGTATTGTGCACGGTTCTTA+AGG + chr1_2:71486436-71486455 None:intergenic 40.0%
! TAATTCTAGACTAGGTTGGC+TGG - chr1_2:71486544-71486563 Msa0089820:intron 40.0%
TGATCATGCACACATGTATG+CGG - chr1_2:71486774-71486793 Msa0089820:intron 40.0%
ATGAAGTTGAATGGGGAAAG+TGG - chr1_2:71486857-71486876 Msa0089820:intron 40.0%
GTAGGGTCATAGGAATAGTT+TGG + chr1_2:71486925-71486944 None:intergenic 40.0%
!! TGAAAGCATTCAACATGCCA+AGG - chr1_2:71487034-71487053 Msa0089820:intron 40.0%
ATCCAAAGCAATTGCTTCCT+TGG + chr1_2:71487054-71487073 None:intergenic 40.0%
! AGCAATTGCTTTGGATGTCA+AGG - chr1_2:71487058-71487077 Msa0089820:intron 40.0%
! ATTGCTTTGGATGTCAAGGA+TGG - chr1_2:71487062-71487081 Msa0089820:intron 40.0%
! TTGCTTTGGATGTCAAGGAT+GGG - chr1_2:71487063-71487082 Msa0089820:intron 40.0%
GGCAACCAGAAAAGAATAAC+TGG + chr1_2:71487324-71487343 None:intergenic 40.0%
TTAAGGTAGCAAGTCTCTTG+GGG + chr1_2:71487345-71487364 None:intergenic 40.0%
CATTAAGGTAGCAAGTCTCT+TGG + chr1_2:71487347-71487366 None:intergenic 40.0%
!!! GTTTTTTTGTCACTGGAGGT+TGG - chr1_2:71487552-71487571 Msa0089820:intron 40.0%
GCTGTAAGTATGAAGAGGAA+TGG - chr1_2:71487617-71487636 Msa0089820:intron 40.0%
GGAAGACCTAACCAAATGTT+TGG - chr1_2:71487712-71487731 Msa0089820:intron 40.0%
ATGTACCAGGAGAAAGATGA+AGG - chr1_2:71487740-71487759 Msa0089820:intron 40.0%
TGTACCAGGAGAAAGATGAA+GGG - chr1_2:71487741-71487760 Msa0089820:intron 40.0%
GTCTTTGTCAGAGAAGAGTT+TGG - chr1_2:71487846-71487865 Msa0089820:intron 40.0%
! TGCACATATTGTGTATTGGC+TGG - chr1_2:71487998-71488017 Msa0089820:intron 40.0%
ACAATGTGGACAATCTGTTG+AGG - chr1_2:71488170-71488189 Msa0089820:intron 40.0%
CAATGTGGACAATCTGTTGA+GGG - chr1_2:71488171-71488190 Msa0089820:intron 40.0%
AATAACTTGATATCCTGGCG+TGG - chr1_2:71488279-71488298 Msa0089820:intron 40.0%
ATAACTTGATATCCTGGCGT+GGG - chr1_2:71488280-71488299 Msa0089820:intron 40.0%
!!! TCATCACCTTATTTTGAGGG+TGG - chr1_2:71488370-71488389 Msa0089820:intron 40.0%
! TGGGAGGATTAGTAAGTTCA+GGG + chr1_2:71488467-71488486 None:intergenic 40.0%
! ATGGGAGGATTAGTAAGTTC+AGG + chr1_2:71488468-71488487 None:intergenic 40.0%
ATTTACAGGGACAAAATGGG+AGG + chr1_2:71490072-71490091 None:intergenic 40.0%
! ACAAAATTTTGCTGAGGTGG+AGG - chr1_2:71488531-71488550 Msa0089820:intron 40.0%
! CAAAATTTTGCTGAGGTGGA+GGG - chr1_2:71488532-71488551 Msa0089820:intron 40.0%
AAAGGAAGAAGATGAAGCCA+GGG + chr1_2:71489880-71489899 None:intergenic 40.0%
AAAAGGAAGAAGATGAAGCC+AGG + chr1_2:71489879-71489898 None:intergenic 40.0%
AATCTGCAAGGAAACTGAGA+GGG + chr1_2:71488699-71488718 None:intergenic 40.0%
AAGTGAAGGAGGGATGAAAA+TGG + chr1_2:71488801-71488820 None:intergenic 40.0%
AAACAGCAGCAAAAGGGAAT+TGG - chr1_2:71489038-71489057 Msa0089820:intron 40.0%
AACAGCAGCAAAAGGGAATT+GGG - chr1_2:71489039-71489058 Msa0089820:intron 40.0%
TGACTCTTCATTCGCCATAA+CGG - chr1_2:71489212-71489231 Msa0089820:CDS 40.0%
AAAGCAACCCAAAATTCAGC+AGG - chr1_2:71489424-71489443 Msa0089820:intron 40.0%
TCGGATCTCAAACTGAAATC+AGG + chr1_2:71489455-71489474 None:intergenic 40.0%
! GATTTCAGTTTGAGATCCGA+CGG - chr1_2:71489455-71489474 Msa0089820:intron 40.0%
CGGGTTGTTGAATTCATCAT+GGG + chr1_2:71489632-71489651 None:intergenic 40.0%
! ACGGGTTGTTGAATTCATCA+TGG + chr1_2:71489633-71489652 None:intergenic 40.0%
ACCACTATCTAGATGCAAAC+GGG + chr1_2:71489651-71489670 None:intergenic 40.0%
TCCTATAACTGAGAGAGTTG+TGG - chr1_2:71489712-71489731 Msa0089820:CDS 40.0%
TCCACAACTCTCTCAGTTAT+AGG + chr1_2:71489716-71489735 None:intergenic 40.0%
AGATGAAGCGTAAAAGATGG+AGG - chr1_2:71489849-71489868 Msa0089820:intron 40.0%
AAAAGGAAGAAGATGAAGCC+AGG - chr1_2:71489879-71489898 Msa0089820:intron 40.0%
AAAGGAAGAAGATGAAGCCA+GGG - chr1_2:71489880-71489899 Msa0089820:intron 40.0%
! CAAAATTTTGCTGAGGTGGA+GGG + chr1_2:71488532-71488551 None:intergenic 40.0%
! ACAAAATTTTGCTGAGGTGG+AGG + chr1_2:71488531-71488550 None:intergenic 40.0%
ATTTACAGGGACAAAATGGG+AGG - chr1_2:71490072-71490091 Msa0089820:intron 40.0%
CTCAGGGACGAAAATTCAAA+TGG - chr1_2:71490104-71490123 Msa0089820:intron 40.0%
TATTAAGACCCTCTGACAGA+AGG + chr1_2:71490359-71490378 None:intergenic 40.0%
! AATAGAGCTCTAGCAGTAGA+CGG - chr1_2:71490375-71490394 Msa0089820:intron 40.0%
GAAAGAGGGTTACAAATGCA+AGG + chr1_2:71490511-71490530 None:intergenic 40.0%
TGCATTTGTAACCCTCTTTC+TGG - chr1_2:71490511-71490530 Msa0089820:intron 40.0%
CATAGTATAGGCGTATTCAC+GGG + chr1_2:71490636-71490655 None:intergenic 40.0%
TGGAGGTGAAAAAAGTGGTT+GGG - chr1_2:71490769-71490788 Msa0089820:intron 40.0%
GTGAAAAAAGTGGTTGGGAA+AGG - chr1_2:71490774-71490793 Msa0089820:intron 40.0%
GAAAAAAGTGGTTGGGAAAG+GGG - chr1_2:71490776-71490795 Msa0089820:intron 40.0%
TATACAAAGGAGGGAAAAGG+TGG + chr1_2:71490968-71490987 None:intergenic 40.0%
AGACAAGAACAAGATCATCC+AGG + chr1_2:71491206-71491225 None:intergenic 40.0%
GAGAGAATGAATCATGCAAC+TGG + chr1_2:71491422-71491441 None:intergenic 40.0%
GTCCATAAAATCATGTGCTG+TGG - chr1_2:71491554-71491573 Msa0089820:intron 40.0%
! TCCCACAGCACATGATTTTA+TGG + chr1_2:71491559-71491578 None:intergenic 40.0%
! GTGGGAATTGATAACTGTCA+AGG - chr1_2:71491573-71491592 Msa0089820:intron 40.0%
ACATCAACGTCACGAAAACA+AGG + chr1_2:71492141-71492160 None:intergenic 40.0%
! AAAGTGTACCTTTTCCTTCC+AGG + chr1_2:71492166-71492185 None:intergenic 40.0%
!! TTCTGTCGTCAGGGTTTTGT+GGG + chr1_2:71484417-71484436 None:intergenic 45.0%
ATTTGGAGGTTCTGTCGTCA+GGG + chr1_2:71484426-71484445 None:intergenic 45.0%
AATTTGGAGGTTCTGTCGTC+AGG + chr1_2:71484427-71484446 None:intergenic 45.0%
!! GGAGTGTTGTTGCAATTTGG+AGG + chr1_2:71484440-71484459 None:intergenic 45.0%
GAGGAGAGTGAGAATGAGAT+CGG + chr1_2:71484461-71484480 None:intergenic 45.0%
TCAAATACTGCTCGTTGCGT+AGG + chr1_2:71484514-71484533 None:intergenic 45.0%
ATCCATCTCTTGCAGATGCT+TGG - chr1_2:71484617-71484636 Msa0089820:CDS 45.0%
AACCAAGCATCTGCAAGAGA+TGG + chr1_2:71484622-71484641 None:intergenic 45.0%
TAGTAAAGCTTATGGGACGG+AGG - chr1_2:71484993-71485012 Msa0089820:intron 45.0%
!!! TTACTTTTTCCTCCGGACTC+CGG - chr1_2:71485562-71485581 Msa0089820:intron 45.0%
!! TAATTGCCGACTCCACTTAG+TGG - chr1_2:71485948-71485967 Msa0089820:intron 45.0%
!! AATTGCCGACTCCACTTAGT+GGG - chr1_2:71485949-71485968 Msa0089820:intron 45.0%
CTTATCCCACTAAGTGGAGT+CGG + chr1_2:71485957-71485976 None:intergenic 45.0%
!!! GAGTACGTATTGGTTTTGGC+GGG + chr1_2:71486196-71486215 None:intergenic 45.0%
!!! GGAGTACGTATTGGTTTTGG+CGG + chr1_2:71486197-71486216 None:intergenic 45.0%
!!! GAGGGAGTACGTATTGGTTT+TGG + chr1_2:71486200-71486219 None:intergenic 45.0%
!! AGATGATTAGAAGGGGCACT+CGG + chr1_2:71486495-71486514 None:intergenic 45.0%
AGGTTTATGTAAGGCGCAGA+GGG + chr1_2:71486578-71486597 None:intergenic 45.0%
AAGGTTTATGTAAGGCGCAG+AGG + chr1_2:71486579-71486598 None:intergenic 45.0%
GATAAAGAAACCTGGTGGTC+TGG - chr1_2:71486688-71486707 Msa0089820:intron 45.0%
GTACAGAAACTGCTTGCAAG+CGG - chr1_2:71486718-71486737 Msa0089820:intron 45.0%
GAGCAACGACTAAGGGAAAT+TGG - chr1_2:71486823-71486842 Msa0089820:intron 45.0%
TGCCAAGGAAGCAATTGCTT+TGG - chr1_2:71487049-71487068 Msa0089820:intron 45.0%
ATGTCAAGGATGGGAACTCT+TGG - chr1_2:71487072-71487091 Msa0089820:intron 45.0%
TGATCCCTTCATCTTTCTCC+TGG + chr1_2:71487748-71487767 None:intergenic 45.0%
AACTATGATAGGGCCCTTAG+TGG - chr1_2:71488073-71488092 Msa0089820:intron 45.0%
AGCAGCCTCAAATCCACTAA+GGG + chr1_2:71488089-71488108 None:intergenic 45.0%
! ATTTGAGGCTGCTGCTTCAA+AGG - chr1_2:71488096-71488115 Msa0089820:intron 45.0%
TAACTTGATATCCTGGCGTG+GGG - chr1_2:71488281-71488300 Msa0089820:intron 45.0%
AAGCTGCCACCCTCAAAATA+AGG + chr1_2:71488379-71488398 None:intergenic 45.0%
GTGACGTGGCATCTGTTTAA+TGG - chr1_2:71488561-71488580 Msa0089820:intron 45.0%
CGCGAACCCAGATTCATTAA+GGG + chr1_2:71488635-71488654 None:intergenic 45.0%
AAGGAAGAAGATGAAGCCAG+GGG + chr1_2:71489881-71489900 None:intergenic 45.0%
CAAGGAAACTGAGAGGGAAA+AGG + chr1_2:71488693-71488712 None:intergenic 45.0%
GAATCTGCAAGGAAACTGAG+AGG + chr1_2:71488700-71488719 None:intergenic 45.0%
GAGTTGCAGTTGAATCTGCA+AGG + chr1_2:71488711-71488730 None:intergenic 45.0%
! TGTTGTTCGTGTGTGTTGCT+GGG + chr1_2:71488733-71488752 None:intergenic 45.0%
! TTGTTGTTCGTGTGTGTTGC+TGG + chr1_2:71488734-71488753 None:intergenic 45.0%
GCAACACACACGAACAACAA+TGG - chr1_2:71488734-71488753 Msa0089820:intron 45.0%
CACACACGAACAACAATGGA+AGG - chr1_2:71488738-71488757 Msa0089820:intron 45.0%
ACACGAACAACAATGGAAGG+AGG - chr1_2:71488741-71488760 Msa0089820:intron 45.0%
TGTTGCAGAGAAGTGAAGGA+GGG + chr1_2:71488811-71488830 None:intergenic 45.0%
!! ATGGTGTTGCAGAGAAGTGA+AGG + chr1_2:71488815-71488834 None:intergenic 45.0%
! AAGAATGGAGTCGATAACGG+TGG - chr1_2:71488931-71488950 Msa0089820:intron 45.0%
TGAGATTGTGTTGTCGGATC+TGG - chr1_2:71488958-71488977 Msa0089820:CDS 45.0%
!!! CCAAAGGCGTCGTTTTGTTT+GGG + chr1_2:71489191-71489210 None:intergenic 45.0%
!!! ACCAAAGGCGTCGTTTTGTT+TGG + chr1_2:71489192-71489211 None:intergenic 45.0%
GCGAATGAAGAGTCAACCAA+AGG + chr1_2:71489207-71489226 None:intergenic 45.0%
! AGGAAGAAGTGTAAGCGATG+TGG - chr1_2:71489390-71489409 Msa0089820:intron 45.0%
! AAGAAGTGTAAGCGATGTGG+TGG - chr1_2:71489393-71489412 Msa0089820:intron 45.0%
! GGCTCAACCTGCTGAATTTT+GGG + chr1_2:71489434-71489453 None:intergenic 45.0%
! AGGCTCAACCTGCTGAATTT+TGG + chr1_2:71489435-71489454 None:intergenic 45.0%
AGAACAACTCATTCCTCCGT+CGG + chr1_2:71489474-71489493 None:intergenic 45.0%
TGAGTTGTTCTATGTTGCCG+AGG - chr1_2:71489483-71489502 Msa0089820:intron 45.0%
TGAATGAACCGAGGTAGTTG+TGG + chr1_2:71489600-71489619 None:intergenic 45.0%
AGCTGAAGTTGAATGAACCG+AGG + chr1_2:71489609-71489628 None:intergenic 45.0%
ACCCGTTTGCATCTAGATAG+TGG - chr1_2:71489647-71489666 Msa0089820:intron 45.0%
! GCTGAACCTTTAGGAGAGAT+TGG - chr1_2:71489683-71489702 Msa0089820:CDS 45.0%
AAGGAAGAAGATGAAGCCAG+GGG - chr1_2:71489881-71489900 Msa0089820:intron 45.0%
CGCAAACCCAGATTCGTTAA+GGG - chr1_2:71489920-71489939 Msa0089820:intron 45.0%
GTGACGTGGCATCTGTTTAA+TGG + chr1_2:71488561-71488580 None:intergenic 45.0%
! ATGGGAGGATTAGTAAGCTC+AGG - chr1_2:71490087-71490106 Msa0089820:intron 45.0%
! TGGGAGGATTAGTAAGCTCA+GGG - chr1_2:71490088-71490107 Msa0089820:intron 45.0%
TACCATAGACCTTCTGTCAG+AGG - chr1_2:71490347-71490366 Msa0089820:intron 45.0%
ACCATAGACCTTCTGTCAGA+GGG - chr1_2:71490348-71490367 Msa0089820:intron 45.0%
! ATAGAGCTCTAGCAGTAGAC+GGG - chr1_2:71490376-71490395 Msa0089820:intron 45.0%
! TCTGGAGCAGAAGACTTACA+GGG + chr1_2:71490439-71490458 None:intergenic 45.0%
!! TTCTGGAGCAGAAGACTTAC+AGG + chr1_2:71490440-71490459 None:intergenic 45.0%
!!! TTTTCCAGTGGGTATTGGGT+CGG - chr1_2:71490744-71490763 Msa0089820:intron 45.0%
GTGGAGGTGAAAAAAGTGGT+TGG - chr1_2:71490768-71490787 Msa0089820:intron 45.0%
! AGCCATAAACGCTGCTTTAG+AGG - chr1_2:71490830-71490849 Msa0089820:intron 45.0%
! GCCATAAACGCTGCTTTAGA+GGG - chr1_2:71490831-71490850 Msa0089820:intron 45.0%
!! TCCCTCTAAAGCAGCGTTTA+TGG + chr1_2:71490835-71490854 None:intergenic 45.0%
CTTGCAGTCTTCGCAGAAAT+TGG - chr1_2:71491179-71491198 Msa0089820:intron 45.0%
TTATGGTGTACGTCAGGATG+TGG - chr1_2:71491286-71491305 Msa0089820:intron 45.0%
! TGATGGGGTCTTATATCAGC+TGG + chr1_2:71491678-71491697 None:intergenic 45.0%
GCTGATCTCCTCCTTTAATC+TGG + chr1_2:71492104-71492123 None:intergenic 45.0%
TGATGTGTCCTGGAAGGAAA+AGG - chr1_2:71492155-71492174 Msa0089820:CDS 45.0%
CCAGGCGTATAGATTTGAAC+TGG + chr1_2:71492342-71492361 None:intergenic 45.0%
CCAGTTCAAATCTATACGCC+TGG - chr1_2:71492339-71492358 Msa0089820:CDS 45.0%
GCACTTGCTCATAGAAATCC+AGG + chr1_2:71492360-71492379 None:intergenic 45.0%
!! GATGTACGAATAGCTTGCTG+AGG + chr1_2:71492406-71492425 None:intergenic 45.0%
!! AATTTAAAGATAATAATAAA+TGG + chr1_2:71485503-71485522 None:intergenic 5.0%
! GTTCTGTCGTCAGGGTTTTG+TGG + chr1_2:71484418-71484437 None:intergenic 50.0%
ATTTGGCCTAAGGACATCCG+AGG - chr1_2:71485311-71485330 Msa0089820:intron 50.0%
TTTGGCCTAAGGACATCCGA+GGG - chr1_2:71485312-71485331 Msa0089820:intron 50.0%
TATGGACTTGGCCACCGAAT+TGG - chr1_2:71485389-71485408 Msa0089820:intron 50.0%
GGTCTTAGGTTTGATTCCCC+CGG + chr1_2:71485417-71485436 None:intergenic 50.0%
TGTGCTCCTCTCAAGGTCTT+AGG + chr1_2:71485431-71485450 None:intergenic 50.0%
CAGTGAAGAAAGGACAGACG+AGG + chr1_2:71485813-71485832 None:intergenic 50.0%
CGACTCCACTTAGTGGGATA+AGG - chr1_2:71485955-71485974 Msa0089820:intron 50.0%
TCCACTTAGTGGGATAAGGC+TGG - chr1_2:71485959-71485978 Msa0089820:intron 50.0%
! ACCAGCCTTATCCCACTAAG+TGG + chr1_2:71485963-71485982 None:intergenic 50.0%
!!! CGTATTGGTTTTGGCGGGTT+GGG + chr1_2:71486191-71486210 None:intergenic 50.0%
!!! ACGTATTGGTTTTGGCGGGT+TGG + chr1_2:71486192-71486211 None:intergenic 50.0%
ACTGCAAGCAATCTGTGGGT+AGG + chr1_2:71486614-71486633 None:intergenic 50.0%
GTCGACTGCAAGCAATCTGT+GGG + chr1_2:71486618-71486637 None:intergenic 50.0%
AGTCGACTGCAAGCAATCTG+TGG + chr1_2:71486619-71486638 None:intergenic 50.0%
ACAGATTGCTTGCAGTCGAC+TGG - chr1_2:71486618-71486637 Msa0089820:intron 50.0%
!! AACCTGGTGGTCTGGTCTTA+AGG - chr1_2:71486696-71486715 Msa0089820:intron 50.0%
TACCTTAAGACCAGACCACC+AGG + chr1_2:71486701-71486720 None:intergenic 50.0%
AGGAGAGTGAGCAACGACTA+AGG - chr1_2:71486815-71486834 Msa0089820:intron 50.0%
GGAGAGTGAGCAACGACTAA+GGG - chr1_2:71486816-71486835 Msa0089820:intron 50.0%
ACCTGATTTCGCAGCAAGCA+CGG + chr1_2:71486988-71487007 None:intergenic 50.0%
!! TAGGGCCCTTAGTGGATTTG+AGG - chr1_2:71488081-71488100 Msa0089820:intron 50.0%
CAGCAGCCTCAAATCCACTA+AGG + chr1_2:71488090-71488109 None:intergenic 50.0%
AACTTGATATCCTGGCGTGG+GGG - chr1_2:71488282-71488301 Msa0089820:intron 50.0%
GTGGAGGGTAATTAGTGACG+TGG - chr1_2:71488547-71488566 Msa0089820:intron 50.0%
GCGCGAACCCAGATTCATTA+AGG + chr1_2:71488636-71488655 None:intergenic 50.0%
CGCAATGACTGAAATACCCC+TGG - chr1_2:71488655-71488674 Msa0089820:CDS 50.0%
GTGTTGCAGAGAAGTGAAGG+AGG + chr1_2:71488812-71488831 None:intergenic 50.0%
! AATGGAGTCGATAACGGTGG+TGG - chr1_2:71488934-71488953 Msa0089820:intron 50.0%
GGTGGCTGAGATTGTGTTGT+CGG - chr1_2:71488952-71488971 Msa0089820:intron 50.0%
!! AGGTGTTGGTGCATCAACGA+AGG + chr1_2:71489145-71489164 None:intergenic 50.0%
CCCAAACAAAACGACGCCTT+TGG - chr1_2:71489188-71489207 Msa0089820:CDS 50.0%
GGTACAGAACGACACCGTTA+TGG + chr1_2:71489229-71489248 None:intergenic 50.0%
! TTCAGTTTGAGATCCGACGG+AGG - chr1_2:71489458-71489477 Msa0089820:intron 50.0%
TATGTTGCCGAGGAGAGCTA+CGG - chr1_2:71489493-71489512 Msa0089820:intron 50.0%
TCAACCAGCGACACAGTCTT+CGG - chr1_2:71489556-71489575 Msa0089820:intron 50.0%
TTCGTGTGCCACAACTACCT+CGG - chr1_2:71489589-71489608 Msa0089820:intron 50.0%
! TCTAGATAGTGGTTCGGACG+TGG - chr1_2:71489658-71489677 Msa0089820:intron 50.0%
GACGTGGTTGCTGAACCTTT+AGG - chr1_2:71489674-71489693 Msa0089820:CDS 50.0%
AGCGTAAAAGATGGAGGCAG+AGG - chr1_2:71489855-71489874 Msa0089820:intron 50.0%
GCGTAAAAGATGGAGGCAGA+GGG - chr1_2:71489856-71489875 Msa0089820:intron 50.0%
AAGATGGAGGCAGAGGGAAA+AGG - chr1_2:71489862-71489881 Msa0089820:intron 50.0%
CGCAATGACTGAAATACCCC+TGG + chr1_2:71488655-71488674 None:intergenic 50.0%
GCGCAAACCCAGATTCGTTA+AGG - chr1_2:71489919-71489938 Msa0089820:intron 50.0%
TGTCAGAACACGTCAGCAGA+TGG + chr1_2:71489966-71489985 None:intergenic 50.0%
GTGGAGGGTAATTAGTGACG+TGG + chr1_2:71488547-71488566 None:intergenic 50.0%
AGCTAAGCGAATCGCCTCTT+TGG - chr1_2:71490192-71490211 Msa0089820:intron 50.0%
AGCCAATGATGCTGCCAAAG+AGG + chr1_2:71490209-71490228 None:intergenic 50.0%
ACCCTCTGACAGAAGGTCTA+TGG + chr1_2:71490352-71490371 None:intergenic 50.0%
CTGGAGCAGAAGACTTACAG+GGG + chr1_2:71490438-71490457 None:intergenic 50.0%
AGTATAGGCGTATTCACGGG+AGG + chr1_2:71490633-71490652 None:intergenic 50.0%
!! TTTCCAGTGGGTATTGGGTC+GGG - chr1_2:71490745-71490764 Msa0089820:intron 50.0%
GTCTTCGCAGAAATTGGACC+TGG - chr1_2:71491185-71491204 Msa0089820:intron 50.0%
TTCGTGACGTTGATGTGTCC+TGG - chr1_2:71492145-71492164 Msa0089820:CDS 50.0%
TGACGTTGATGTGTCCTGGA+AGG - chr1_2:71492149-71492168 Msa0089820:CDS 50.0%
! CTTCTGGAGGAACGGAATCG+AGG + chr1_2:71484480-71484499 None:intergenic 55.0%
TTGGCCTAAGGACATCCGAG+GGG - chr1_2:71485313-71485332 Msa0089820:intron 55.0%
AATCCCAACCGTCCACTTGC+CGG - chr1_2:71485339-71485358 Msa0089820:intron 55.0%
! ACTGGCTTAAAATGGGGGCC+CGG + chr1_2:71485361-71485380 None:intergenic 55.0%
! TGATTCCCCCGGTGCCAATT+CGG + chr1_2:71485406-71485425 None:intergenic 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG + chr1_2:71485438-71485457 None:intergenic 55.0%
! CTTGAGAGGAGCACACTCCA+AGG - chr1_2:71485436-71485455 Msa0089820:intron 55.0%
ACCACTCGGCCAACCCAAAT+GGG - chr1_2:71485471-71485490 Msa0089820:CDS 55.0%
GAAACCAAGACTCCGGAGTC+CGG + chr1_2:71485577-71485596 None:intergenic 55.0%
! GAGACGGAGGGAGTACGTAT+TGG + chr1_2:71486206-71486225 None:intergenic 55.0%
GTAAGGCGCAGAGGGTCAAT+GGG + chr1_2:71486570-71486589 None:intergenic 55.0%
TGTAAGGCGCAGAGGGTCAA+TGG + chr1_2:71486571-71486590 None:intergenic 55.0%
! ACCGTGCTTGCTGCGAAATC+AGG - chr1_2:71486984-71487003 Msa0089820:intron 55.0%
! GCTTGCTGCGAAATCAGGTG+CGG - chr1_2:71486989-71487008 Msa0089820:intron 55.0%
! GCTGCTGCTTCAAAGGATCC+AGG - chr1_2:71488103-71488122 Msa0089820:intron 55.0%
GAAAAAGAATCCCCCACGCC+AGG + chr1_2:71488295-71488314 None:intergenic 55.0%
TGTCAGGACACGTCAGCAGA+TGG - chr1_2:71488589-71488608 Msa0089820:CDS 55.0%
CGTGTAACCGTAGCTCTCCT+CGG + chr1_2:71489503-71489522 None:intergenic 55.0%
CGAGGAGAGCTACGGTTACA+CGG - chr1_2:71489501-71489520 Msa0089820:intron 55.0%
GAGGAGAGCTACGGTTACAC+GGG - chr1_2:71489502-71489521 Msa0089820:intron 55.0%
ACAACCGAAGACTGTGTCGC+TGG + chr1_2:71489563-71489582 None:intergenic 55.0%
AGCGACACAGTCTTCGGTTG+TGG - chr1_2:71489562-71489581 Msa0089820:intron 55.0%
GCGACACAGTCTTCGGTTGT+GGG - chr1_2:71489563-71489582 Msa0089820:intron 55.0%
GAGGTAGTTGTGGCACACGA+AGG + chr1_2:71489590-71489609 None:intergenic 55.0%
AACACGTCAGCAGATGGCGA+GGG + chr1_2:71489960-71489979 None:intergenic 55.0%
CGCCTCTTTGGCAGCATCAT+TGG - chr1_2:71490204-71490223 Msa0089820:intron 55.0%
! AGCTCTAGCAGTAGACGGGA+AGG - chr1_2:71490380-71490399 Msa0089820:intron 55.0%
!! TTCCAGTGGGTATTGGGTCG+GGG - chr1_2:71490746-71490765 Msa0089820:intron 55.0%
CGGGGTGGAGGTGAAAAAAG+TGG - chr1_2:71490764-71490783 Msa0089820:intron 55.0%
TGGACCCCTCGGATGTCCTT+AGG + chr1_2:71485320-71485339 None:intergenic 60.0%
ACGGTTGGGATTGGACCCCT+CGG + chr1_2:71485331-71485350 None:intergenic 60.0%
GGCAAGTGGACGGTTGGGAT+TGG + chr1_2:71485340-71485359 None:intergenic 60.0%
ATCCCAACCGTCCACTTGCC+GGG - chr1_2:71485340-71485359 Msa0089820:intron 60.0%
TAAAATGGGGGCCCGGCAAG+TGG + chr1_2:71485354-71485373 None:intergenic 60.0%
CTTGGCCACCGAATTGGCAC+CGG - chr1_2:71485395-71485414 Msa0089820:intron 60.0%
TTGGCCACCGAATTGGCACC+GGG - chr1_2:71485396-71485415 Msa0089820:intron 60.0%
!! TTTGGGTTGGCCGAGTGGTG+CGG + chr1_2:71485470-71485489 None:intergenic 60.0%
CACCACTCGGCCAACCCAAA+TGG - chr1_2:71485470-71485489 Msa0089820:CDS 60.0%
!! ACCCATTTGGGTTGGCCGAG+TGG + chr1_2:71485475-71485494 None:intergenic 60.0%
!!! TTTTGGCGGGTTGGGAGAGG+AGG + chr1_2:71486183-71486202 None:intergenic 60.0%
!!! TGGTTTTGGCGGGTTGGGAG+AGG + chr1_2:71486186-71486205 None:intergenic 60.0%
TCCAGGTCTCAACGCTGCAG+AGG - chr1_2:71488120-71488139 Msa0089820:intron 60.0%
! TCCTCTGCAGCGTTGAGACC+TGG + chr1_2:71488124-71488143 None:intergenic 60.0%
AGGTCTCAACGCTGCAGAGG+AGG - chr1_2:71488123-71488142 Msa0089820:intron 60.0%
GACACGTCAGCAGATGGCGA+GGG - chr1_2:71488595-71488614 Msa0089820:CDS 60.0%
TGGGTCCCTTAGAGTTGCCG+TGG - chr1_2:71489286-71489305 Msa0089820:intron 60.0%
GAACACGTCAGCAGATGGCG+AGG + chr1_2:71489961-71489980 None:intergenic 60.0%
TGGCCACCGAATTGGCACCG+GGG - chr1_2:71485397-71485416 Msa0089820:intron 65.0%
! TTCCCCCGGTGCCAATTCGG+TGG + chr1_2:71485403-71485422 None:intergenic 65.0%
!! TTGGGTTGGCCGAGTGGTGC+GGG + chr1_2:71485469-71485488 None:intergenic 65.0%
TCCTCCGGACTCCGGAGTCT+TGG - chr1_2:71485570-71485589 Msa0089820:intron 65.0%
ACCAAGACTCCGGAGTCCGG+AGG + chr1_2:71485574-71485593 None:intergenic 65.0%
GGACACGTCAGCAGATGGCG+AGG - chr1_2:71488594-71488613 Msa0089820:CDS 65.0%
CACCCCGACCCAATACCCAC+TGG + chr1_2:71490751-71490770 None:intergenic 65.0%
!! CAGTGGGTATTGGGTCGGGG+TGG - chr1_2:71490749-71490768 Msa0089820:intron 65.0%
!! TGGGTATTGGGTCGGGGTGG+AGG - chr1_2:71490752-71490771 Msa0089820:intron 65.0%
GGCCCGGCAAGTGGACGGTT+GGG + chr1_2:71485345-71485364 None:intergenic 70.0%
ATGGGGGCCCGGCAAGTGGA+CGG + chr1_2:71485350-71485369 None:intergenic 70.0%
! GGCCACCGAATTGGCACCGG+GGG - chr1_2:71485398-71485417 Msa0089820:intron 70.0%
GTGGTGCGGGCTTCGGACCT+TGG + chr1_2:71485456-71485475 None:intergenic 70.0%
GGTCCGAAGCCCGCACCACT+CGG - chr1_2:71485457-71485476 Msa0089820:CDS 70.0%
TGGCCGAGTGGTGCGGGCTT+CGG + chr1_2:71485463-71485482 None:intergenic 70.0%
!! GGCGGGTTGGGAGAGGAGGA+AGG + chr1_2:71486179-71486198 None:intergenic 70.0%
GGGCCCGGCAAGTGGACGGT+TGG + chr1_2:71485346-71485365 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 71484310 71492450 71484310 ID=Msa0089820;Name=Msa0089820
chr1_2 mRNA 71484310 71492450 71484310 ID=Msa0089820-mRNA-1;Parent=Msa0089820;Name=Msa0089820-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0.5|0.63|1|0.6|0.63|11|0|363
chr1_2 exon 71492202 71492450 71492202 ID=Msa0089820-mRNA-1:exon:24679;Parent=Msa0089820-mRNA-1
chr1_2 exon 71492090 71492183 71492090 ID=Msa0089820-mRNA-1:exon:24678;Parent=Msa0089820-mRNA-1
chr1_2 exon 71489665 71489754 71489665 ID=Msa0089820-mRNA-1:exon:24677;Parent=Msa0089820-mRNA-1
chr1_2 exon 71489141 71489235 71489141 ID=Msa0089820-mRNA-1:exon:24676;Parent=Msa0089820-mRNA-1
chr1_2 exon 71488958 71489011 71488958 ID=Msa0089820-mRNA-1:exon:24675;Parent=Msa0089820-mRNA-1
chr1_2 exon 71488568 71488705 71488568 ID=Msa0089820-mRNA-1:exon:24674;Parent=Msa0089820-mRNA-1
chr1_2 exon 71488542 71488548 71488542 ID=Msa0089820-mRNA-1:exon:24673;Parent=Msa0089820-mRNA-1
chr1_2 exon 71486321 71486435 71486321 ID=Msa0089820-mRNA-1:exon:24672;Parent=Msa0089820-mRNA-1
chr1_2 exon 71485453 71485522 71485453 ID=Msa0089820-mRNA-1:exon:24671;Parent=Msa0089820-mRNA-1
chr1_2 exon 71484584 71484655 71484584 ID=Msa0089820-mRNA-1:exon:24670;Parent=Msa0089820-mRNA-1
chr1_2 exon 71484310 71484417 71484310 ID=Msa0089820-mRNA-1:exon:24669;Parent=Msa0089820-mRNA-1
chr1_2 CDS 71492202 71492450 71492202 ID=Msa0089820-mRNA-1:cds;Parent=Msa0089820-mRNA-1
chr1_2 CDS 71492090 71492183 71492090 ID=Msa0089820-mRNA-1:cds;Parent=Msa0089820-mRNA-1
chr1_2 CDS 71489665 71489754 71489665 ID=Msa0089820-mRNA-1:cds;Parent=Msa0089820-mRNA-1
chr1_2 CDS 71489141 71489235 71489141 ID=Msa0089820-mRNA-1:cds;Parent=Msa0089820-mRNA-1
chr1_2 CDS 71488958 71489011 71488958 ID=Msa0089820-mRNA-1:cds;Parent=Msa0089820-mRNA-1
chr1_2 CDS 71488568 71488705 71488568 ID=Msa0089820-mRNA-1:cds;Parent=Msa0089820-mRNA-1
chr1_2 CDS 71488542 71488548 71488542 ID=Msa0089820-mRNA-1:cds;Parent=Msa0089820-mRNA-1
chr1_2 CDS 71486321 71486435 71486321 ID=Msa0089820-mRNA-1:cds;Parent=Msa0089820-mRNA-1
chr1_2 CDS 71485453 71485522 71485453 ID=Msa0089820-mRNA-1:cds;Parent=Msa0089820-mRNA-1
chr1_2 CDS 71484584 71484655 71484584 ID=Msa0089820-mRNA-1:cds;Parent=Msa0089820-mRNA-1
chr1_2 CDS 71484310 71484417 71484310 ID=Msa0089820-mRNA-1:cds;Parent=Msa0089820-mRNA-1
Gene Sequence

>Msa0089820

ATGGAGAATTCAGGCAGCGGCGAAGTAGAAGAAGAAGAAGAAGCGTTATTGGTGAAAGCTGCAAAATCCACTGACGAACTTTACCTTCTTCGTGATACATTTTTCCCACAAAACCCTGACGACAGAACCTCCAAATTGCAACAACACTCCGATCTCATTCTCACTCTCCTCGATTCCGTTCCTCCAGAAGAAAGAAAATCACCTACGCAACGAGCAGTATTTGAATATCTTCGAGGAAAAGTGTTAGATAAAGAAGCTGAAGATCATCTATCAAAAGCTGTTAAGTTGAATCCATCTCTTGCAGATGCTTGGTTATGTTTAGGAAACTGTATTTGGAAAAAAGGTGCGGATAATCAAGCTGAACTCGTTGATGAAAGCATTCAACATGCCAAGGAAGCAATTGCTTTGGATGTCAAGGATGGGAACTCTTGGTATAATCTTGGAAATGCATATCTGACAAGTTTTTTTGTCACTGGAGGTTGGGATCATACCAGACTTTCACATTCTTTAAAAGCATATCAAAATGCTGAGAAAGATGAAGGGATCAAGTCCAATCCTGACTTTTACTTTAATAGTGCCATTGCTAACAAATATCTAGAGAACTATGATAGGGCCCTTAGTGGATTTGAGGCTGCTGCTTCAAAGGATCCAGGTCTCAACGCTGCAGAGGAGGTTCAGAAAATTGTCAATTTACTTGACAATGTGGACAATCTGTTGAGGCTATGTATGAAATCGCCATACAGAACAGTTACCATAGACCTTCTGTCAGAGGGTCTTAATAGAGCTCTAGCAGTAGACGGGAAGGTGTTATTCTTAATCAGGAGTGAGGGTGTTGCTCCCCTATACTATTTGCTGTGTGATTCAAACCAAACTTGCTTTGTTCTTTCAATTTATGGTGTACGTCAGGATGTGATTAAAGGAGGAGATCAGCTCACATTGCTTGATCCTTGTTTTCGTGACGTTGATGTGTCCTGGAAGGAAAAGTTCAAATCTATACGCCTGGATTTCTATGAGCAAGTGCTTGTTAATGGAAAAGCTCTGACTCCTCAGCAAGCTATTCGTACATCGATATACGCACAACATAAACCATGA

Protein sequence

>Msa0089820

MENSGSGEVEEEEEALLVKAAKSTDELYLLRDTFFPQNPDDRTSKLQQHSDLILTLLDSVPPEERKSPTQRAVFEYLRGKVLDKEAEDHLSKAVKLNPSLADAWLCLGNCIWKKGADNQAELVDESIQHAKEAIALDVKDGNSWYNLGNAYLTSFFVTGGWDHTRLSHSLKAYQNAEKDEGIKSNPDFYFNSAIANKYLENYDRALSGFEAAASKDPGLNAAEEVQKIVNLLDNVDNLLRLCMKSPYRTVTIDLLSEGLNRALAVDGKVLFLIRSEGVAPLYYLLCDSNQTCFVLSIYGVRQDVIKGGDQLTLLDPCFRDVDVSWKEKFKSIRLDFYEQVLVNGKALTPQQAIRTSIYAQHKP*