Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1255110 | XP_003629431.2 | 71.186 | 59 | 16 | 1 | 26 | 83 | 1 | 59 | 3.23e-16 | 76.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1255110 | I3T8Y0 | 71.186 | 59 | 16 | 1 | 26 | 83 | 1 | 59 | 1.54e-16 | 76.6 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054760 | Msa1255110 | 0.806510 | 7.941767e-50 | -8.615850e-47 |
| Msa0072710 | Msa1255110 | 0.831282 | 1.823427e-55 | -8.615850e-47 |
| Msa0072910 | Msa1255110 | 0.801079 | 1.066336e-48 | -8.615850e-47 |
| Msa0093440 | Msa1255110 | 0.801146 | 1.033382e-48 | -8.615850e-47 |
| Msa0101150 | Msa1255110 | 0.813987 | 1.937569e-51 | -8.615850e-47 |
| Msa0101210 | Msa1255110 | 0.812054 | 5.141263e-51 | -8.615850e-47 |
| Msa0607440 | Msa1255110 | 0.826189 | 3.109256e-54 | -8.615850e-47 |
| Msa0621380 | Msa1255110 | 0.840180 | 1.015819e-57 | -8.615850e-47 |
| Msa0660880 | Msa1255110 | -0.814445 | 1.535191e-51 | -8.615850e-47 |
| Msa0716740 | Msa1255110 | -0.809767 | 1.607663e-50 | -8.615850e-47 |
| Msa0744070 | Msa1255110 | 0.809505 | 1.830664e-50 | -8.615850e-47 |
| Msa0752580 | Msa1255110 | 0.808624 | 2.825818e-50 | -8.615850e-47 |
| Msa0753530 | Msa1255110 | 0.800766 | 1.235411e-48 | -8.615850e-47 |
| Msa0754500 | Msa1255110 | 0.808347 | 3.239107e-50 | -8.615850e-47 |
| Msa0766040 | Msa1255110 | 0.808751 | 2.655598e-50 | -8.615850e-47 |
| Msa0799290 | Msa1255110 | -0.820391 | 7.032240e-53 | -8.615850e-47 |
| Msa0825300 | Msa1255110 | 0.805318 | 1.414362e-49 | -8.615850e-47 |
| Msa0836200 | Msa1255110 | 0.809249 | 2.077664e-50 | -8.615850e-47 |
| Msa0837510 | Msa1255110 | -0.820424 | 6.910818e-53 | -8.615850e-47 |
| Msa0206600 | Msa1255110 | 0.812851 | 3.443179e-51 | -8.615850e-47 |
| Msa1233770 | Msa1255110 | 0.806492 | 8.011479e-50 | -8.615850e-47 |
| Msa1255110 | Msa1255120 | 0.843726 | 1.173540e-58 | -8.615850e-47 |
| Msa1255110 | Msa1295560 | 0.993720 | 9.781388e-202 | -8.615850e-47 |
| Msa1255110 | Msa1295570 | 0.842722 | 2.173962e-58 | -8.615850e-47 |
| Msa1255110 | Msa1357380 | 0.804485 | 2.112301e-49 | -8.615850e-47 |
| Msa1255110 | Msa1369900 | 0.805079 | 1.587433e-49 | -8.615850e-47 |
| Msa1255110 | Msa1408190 | 0.808741 | 2.667922e-50 | -8.615850e-47 |
| Msa1255110 | Msa1448990 | 0.809415 | 1.913972e-50 | -8.615850e-47 |
| Msa1255110 | Msa1450420 | 0.823733 | 1.181794e-53 | -8.615850e-47 |
| Msa0365360 | Msa1255110 | 0.810226 | 1.280796e-50 | -8.615850e-47 |
| Msa0372250 | Msa1255110 | 0.816580 | 5.138960e-52 | -8.615850e-47 |
| Msa0416000 | Msa1255110 | 0.823571 | 1.289565e-53 | -8.615850e-47 |
| Msa0421100 | Msa1255110 | 0.815935 | 7.163080e-52 | -8.615850e-47 |
| Msa0423590 | Msa1255110 | 0.806489 | 8.026324e-50 | -8.615850e-47 |
| Msa0423600 | Msa1255110 | 0.802705 | 4.943117e-49 | -8.615850e-47 |
| Msa0438440 | Msa1255110 | 0.809578 | 1.765268e-50 | -8.615850e-47 |
| Msa0457370 | Msa1255110 | 0.811910 | 5.525991e-51 | -8.615850e-47 |
| Msa0471080 | Msa1255110 | 0.800318 | 1.524300e-48 | -8.615850e-47 |
| Msa0475740 | Msa1255110 | 0.818959 | 1.492814e-52 | -8.615850e-47 |
| Msa1030380 | Msa1255110 | -0.806750 | 7.069545e-50 | -8.615850e-47 |
| Msa1033670 | Msa1255110 | 0.800182 | 1.625051e-48 | -8.615850e-47 |
| Msa1069390 | Msa1255110 | -0.802996 | 4.303643e-49 | -8.615850e-47 |
| Msa1081600 | Msa1255110 | 0.809526 | 1.811241e-50 | -8.615850e-47 |
| Msa1081700 | Msa1255110 | 0.815061 | 1.121104e-51 | -8.615850e-47 |
| Msa1092430 | Msa1255110 | 0.800451 | 1.432197e-48 | -8.615850e-47 |
| Msa0241580 | Msa1255110 | 0.823432 | 1.389235e-53 | -8.615850e-47 |
| Msa0279460 | Msa1255110 | 0.805366 | 1.381861e-49 | -8.615850e-47 |
| Msa0279490 | Msa1255110 | 0.825208 | 5.312919e-54 | -8.615850e-47 |
| Msa0312780 | Msa1255110 | 0.805237 | 1.470897e-49 | -8.615850e-47 |
| Msa0319090 | Msa1255110 | 0.815429 | 9.287739e-52 | -8.615850e-47 |
| Msa0352200 | Msa1255110 | 0.816127 | 6.490991e-52 | -8.615850e-47 |
| Msa1166370 | Msa1255110 | 0.806436 | 8.235685e-50 | -8.615850e-47 |
| Msa1208250 | Msa1255110 | 0.804659 | 1.942572e-49 | -8.615850e-47 |
| Msa0513170 | Msa1255110 | 0.801500 | 8.743235e-49 | -8.615850e-47 |
| Msa0568810 | Msa1255110 | 0.807690 | 4.467849e-50 | -8.615850e-47 |
| Msa0583930 | Msa1255110 | 0.801884 | 7.295132e-49 | -8.615850e-47 |
| Msa0854560 | Msa1255110 | 0.805813 | 1.113733e-49 | -8.615850e-47 |
| Msa0875130 | Msa1255110 | 0.841406 | 4.845731e-58 | -8.615850e-47 |
| Msa0968450 | Msa1255110 | 0.801636 | 8.201324e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAATATAGGTCCTATTTAT+AGG | 0.244589 | 8_2:-53496227 | None:intergenic |
| CCTATATGTGTCCTATAAAT+AGG | 0.265061 | 8_2:+53496216 | Msa1255110:three_prime_UTR |
| GCAACATTCTGCCACTTATC+TGG | 0.266066 | 8_2:-53495468 | None:intergenic |
| TGTAAATACATGGACATAAT+TGG | 0.271100 | 8_2:-53496028 | None:intergenic |
| AATCAGTTGAAGATGTTAAA+AGG | 0.300561 | 8_2:+53495505 | Msa1255110:CDS |
| AGCTCATCTTGTTCTTGAAA+TGG | 0.307339 | 8_2:+53495377 | None:intergenic |
| AACAATAGATAAATTAATAC+TGG | 0.349088 | 8_2:-53496100 | None:intergenic |
| ATAGGACACATATAGGTAAA+TGG | 0.360529 | 8_2:-53496209 | None:intergenic |
| TACAATCATATGGAAGGTTA+AGG | 0.385469 | 8_2:-53496152 | None:intergenic |
| GTGTCATTACATTGCAATAT+AGG | 0.394320 | 8_2:-53496240 | None:intergenic |
| CAAACAATTTGAAAGAGCTT+TGG | 0.396764 | 8_2:+53495425 | Msa1255110:CDS |
| TTTGTAAGTAAATTGCTTCA+AGG | 0.401631 | 8_2:-53496060 | None:intergenic |
| TGCGCCTAACATCTTCTTTG+AGG | 0.404699 | 8_2:-53495539 | None:intergenic |
| GCTCATCTTGTTCTTGAAAT+GGG | 0.405032 | 8_2:+53495378 | None:intergenic |
| GTTATGAATATACCTATTAG+TGG | 0.422166 | 8_2:+53496120 | Msa1255110:three_prime_UTR |
| AGGGATGGACATCCACTAAT+AGG | 0.424190 | 8_2:-53496132 | None:intergenic |
| CCTATTTATAGGACACATAT+AGG | 0.451071 | 8_2:-53496216 | None:intergenic |
| TAGTGGGAGTTACAATCATA+TGG | 0.457289 | 8_2:-53496162 | None:intergenic |
| TGGGATCAACTTGGACTCCA+AGG | 0.513093 | 8_2:+53495397 | Msa1255110:CDS |
| ACAATCATATGGAAGGTTAA+GGG | 0.515996 | 8_2:-53496151 | None:intergenic |
| TTGGTAGCTTGCAATGCAGT+TGG | 0.521852 | 8_2:-53496009 | None:intergenic |
| AGATCCTCAAAGAAGATGTT+AGG | 0.522074 | 8_2:+53495535 | Msa1255110:CDS |
| TTCTTGAAATGGGATCAACT+TGG | 0.536988 | 8_2:+53495388 | Msa1255110:CDS |
| ATAGAGATTCTCCAGATAAG+TGG | 0.553229 | 8_2:+53495457 | Msa1255110:CDS |
| CATTACAATCCACTCACTAG+TGG | 0.573179 | 8_2:-53496179 | None:intergenic |
| AACTGATTTCCCCACCATGT+TGG | 0.577684 | 8_2:-53495490 | None:intergenic |
| GATGTTAGGCGCATTGAGCA+TGG | 0.583089 | 8_2:+53495549 | Msa1255110:CDS |
| GGGAGTTACAATCATATGGA+AGG | 0.611155 | 8_2:-53496158 | None:intergenic |
| TCATATGGAAGGTTAAGGGA+TGG | 0.617562 | 8_2:-53496147 | None:intergenic |
| GTGGCAGAATGTTGCCAACA+TGG | 0.629175 | 8_2:+53495476 | Msa1255110:CDS |
| ATTACAATCCACTCACTAGT+GGG | 0.631431 | 8_2:-53496178 | None:intergenic |
| CAGAATGTTGCCAACATGGT+GGG | 0.631728 | 8_2:+53495480 | Msa1255110:CDS |
| TTGTAACTCCCACTAGTGAG+TGG | 0.632254 | 8_2:+53496170 | Msa1255110:three_prime_UTR |
| AGTAGTACTATCAACAGCAG+TGG | 0.647471 | 8_2:+53495953 | Msa1255110:three_prime_UTR |
| AGAATGTTGCCAACATGGTG+GGG | 0.648486 | 8_2:+53495481 | Msa1255110:CDS |
| GCAGAATGTTGCCAACATGG+TGG | 0.688195 | 8_2:+53495479 | Msa1255110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTACTTATTAATTAACTA+TGG | - | chr8_2:53495924-53495943 | None:intergenic | 10.0% |
| !!! | TTTTACTTATTAATTAACTA+TGG | - | chr8_2:53495924-53495943 | None:intergenic | 10.0% |
| !! | GAAAAAAAAATGTAAATACA+TGG | - | chr8_2:53496041-53496060 | None:intergenic | 15.0% |
| !! | AACAATAGATAAATTAATAC+TGG | - | chr8_2:53496103-53496122 | None:intergenic | 15.0% |
| !! | GAAAAAAAAATGTAAATACA+TGG | - | chr8_2:53496041-53496060 | None:intergenic | 15.0% |
| !! | AACAATAGATAAATTAATAC+TGG | - | chr8_2:53496103-53496122 | None:intergenic | 15.0% |
| !! | TGATGTGAATAAAAAAATGT+GGG | - | chr8_2:53495738-53495757 | None:intergenic | 20.0% |
| !! | ATGATGTGAATAAAAAAATG+TGG | - | chr8_2:53495739-53495758 | None:intergenic | 20.0% |
| !! | TGATGTGAATAAAAAAATGT+GGG | - | chr8_2:53495738-53495757 | None:intergenic | 20.0% |
| !! | ATGATGTGAATAAAAAAATG+TGG | - | chr8_2:53495739-53495758 | None:intergenic | 20.0% |
| ! | AATCAGTTGAAGATGTTAAA+AGG | + | chr8_2:53495505-53495524 | Msa1255110:CDS | 25.0% |
| ! | TAGCATTATTTGTTCTGTAA+GGG | - | chr8_2:53495587-53495606 | None:intergenic | 25.0% |
| ! | TTAGCATTATTTGTTCTGTA+AGG | - | chr8_2:53495588-53495607 | None:intergenic | 25.0% |
| ! | GGATGTGTATAAAAAAATGT+GGG | - | chr8_2:53495660-53495679 | None:intergenic | 25.0% |
| ! | TGTAAATACATGGACATAAT+TGG | - | chr8_2:53496031-53496050 | None:intergenic | 25.0% |
| ! | TTTGTAAGTAAATTGCTTCA+AGG | - | chr8_2:53496063-53496082 | None:intergenic | 25.0% |
| ! | GTTATGAATATACCTATTAG+TGG | + | chr8_2:53496120-53496139 | Msa1255110:three_prime_UTR | 25.0% |
| ! | AATCAGTTGAAGATGTTAAA+AGG | + | chr8_2:53495505-53495524 | Msa1255110:CDS | 25.0% |
| ! | TAGCATTATTTGTTCTGTAA+GGG | - | chr8_2:53495587-53495606 | None:intergenic | 25.0% |
| ! | TTAGCATTATTTGTTCTGTA+AGG | - | chr8_2:53495588-53495607 | None:intergenic | 25.0% |
| ! | GGATGTGTATAAAAAAATGT+GGG | - | chr8_2:53495660-53495679 | None:intergenic | 25.0% |
| ! | TGTAAATACATGGACATAAT+TGG | - | chr8_2:53496031-53496050 | None:intergenic | 25.0% |
| ! | TTTGTAAGTAAATTGCTTCA+AGG | - | chr8_2:53496063-53496082 | None:intergenic | 25.0% |
| ! | GTTATGAATATACCTATTAG+TGG | + | chr8_2:53496120-53496139 | Msa1255110:three_prime_UTR | 25.0% |
| !!! | TCAAATTGTTTGTTTTGCCT+TGG | - | chr8_2:53495417-53495436 | None:intergenic | 30.0% |
| CAAACAATTTGAAAGAGCTT+TGG | + | chr8_2:53495425-53495444 | Msa1255110:CDS | 30.0% | |
| !!! | CCTTTTGTTATTAAAGACCA+AGG | - | chr8_2:53495620-53495639 | None:intergenic | 30.0% |
| ! | CCTTGGTCTTTAATAACAAA+AGG | + | chr8_2:53495617-53495636 | Msa1255110:intron | 30.0% |
| CGGATGTGTATAAAAAAATG+TGG | - | chr8_2:53495661-53495680 | None:intergenic | 30.0% | |
| ! | TCTTCAATTTTGTTGGATTC+TGG | - | chr8_2:53495892-53495911 | None:intergenic | 30.0% |
| ! | ACTTGAGTCTTCAATTTTGT+TGG | - | chr8_2:53495899-53495918 | None:intergenic | 30.0% |
| ACAATCATATGGAAGGTTAA+GGG | - | chr8_2:53496154-53496173 | None:intergenic | 30.0% | |
| TACAATCATATGGAAGGTTA+AGG | - | chr8_2:53496155-53496174 | None:intergenic | 30.0% | |
| ATAGGACACATATAGGTAAA+TGG | - | chr8_2:53496212-53496231 | None:intergenic | 30.0% | |
| CCTATTTATAGGACACATAT+AGG | - | chr8_2:53496219-53496238 | None:intergenic | 30.0% | |
| CCTATATGTGTCCTATAAAT+AGG | + | chr8_2:53496216-53496235 | Msa1255110:three_prime_UTR | 30.0% | |
| GCAATATAGGTCCTATTTAT+AGG | - | chr8_2:53496230-53496249 | None:intergenic | 30.0% | |
| ! | GTGTCATTACATTGCAATAT+AGG | - | chr8_2:53496243-53496262 | None:intergenic | 30.0% |
| !!! | TCAAATTGTTTGTTTTGCCT+TGG | - | chr8_2:53495417-53495436 | None:intergenic | 30.0% |
| CAAACAATTTGAAAGAGCTT+TGG | + | chr8_2:53495425-53495444 | Msa1255110:CDS | 30.0% | |
| !!! | CCTTTTGTTATTAAAGACCA+AGG | - | chr8_2:53495620-53495639 | None:intergenic | 30.0% |
| ! | CCTTGGTCTTTAATAACAAA+AGG | + | chr8_2:53495617-53495636 | Msa1255110:intron | 30.0% |
| CGGATGTGTATAAAAAAATG+TGG | - | chr8_2:53495661-53495680 | None:intergenic | 30.0% | |
| ! | TCTTCAATTTTGTTGGATTC+TGG | - | chr8_2:53495892-53495911 | None:intergenic | 30.0% |
| ! | ACTTGAGTCTTCAATTTTGT+TGG | - | chr8_2:53495899-53495918 | None:intergenic | 30.0% |
| ACAATCATATGGAAGGTTAA+GGG | - | chr8_2:53496154-53496173 | None:intergenic | 30.0% | |
| TACAATCATATGGAAGGTTA+AGG | - | chr8_2:53496155-53496174 | None:intergenic | 30.0% | |
| ATAGGACACATATAGGTAAA+TGG | - | chr8_2:53496212-53496231 | None:intergenic | 30.0% | |
| CCTATTTATAGGACACATAT+AGG | - | chr8_2:53496219-53496238 | None:intergenic | 30.0% | |
| CCTATATGTGTCCTATAAAT+AGG | + | chr8_2:53496216-53496235 | Msa1255110:three_prime_UTR | 30.0% | |
| GCAATATAGGTCCTATTTAT+AGG | - | chr8_2:53496230-53496249 | None:intergenic | 30.0% | |
| ! | GTGTCATTACATTGCAATAT+AGG | - | chr8_2:53496243-53496262 | None:intergenic | 30.0% |
| TTCTTGAAATGGGATCAACT+TGG | + | chr8_2:53495388-53495407 | Msa1255110:CDS | 35.0% | |
| ATAGAGATTCTCCAGATAAG+TGG | + | chr8_2:53495457-53495476 | Msa1255110:CDS | 35.0% | |
| AGATCCTCAAAGAAGATGTT+AGG | + | chr8_2:53495535-53495554 | Msa1255110:CDS | 35.0% | |
| AATGCTAATAACTGAGACCT+TGG | + | chr8_2:53495600-53495619 | Msa1255110:intron | 35.0% | |
| AGATTCTGTACAAGATTGCA+CGG | - | chr8_2:53495681-53495700 | None:intergenic | 35.0% | |
| TTTAGTATAGCTACAGCCTT+TGG | + | chr8_2:53495789-53495808 | Msa1255110:intron | 35.0% | |
| AACATATATACAGCAGCCAA+AGG | - | chr8_2:53495808-53495827 | None:intergenic | 35.0% | |
| TAATTCCTTCTTTCACTTGC+AGG | + | chr8_2:53495858-53495877 | Msa1255110:intron | 35.0% | |
| !!! | TTCTGTTCACTGCTGTTTTT+TGG | - | chr8_2:53495982-53496001 | None:intergenic | 35.0% |
| TAGTGGGAGTTACAATCATA+TGG | - | chr8_2:53496165-53496184 | None:intergenic | 35.0% | |
| ATTACAATCCACTCACTAGT+GGG | - | chr8_2:53496181-53496200 | None:intergenic | 35.0% | |
| TTCTTGAAATGGGATCAACT+TGG | + | chr8_2:53495388-53495407 | Msa1255110:CDS | 35.0% | |
| ATAGAGATTCTCCAGATAAG+TGG | + | chr8_2:53495457-53495476 | Msa1255110:CDS | 35.0% | |
| AGATCCTCAAAGAAGATGTT+AGG | + | chr8_2:53495535-53495554 | Msa1255110:CDS | 35.0% | |
| AATGCTAATAACTGAGACCT+TGG | + | chr8_2:53495600-53495619 | Msa1255110:intron | 35.0% | |
| AGATTCTGTACAAGATTGCA+CGG | - | chr8_2:53495681-53495700 | None:intergenic | 35.0% | |
| TTTAGTATAGCTACAGCCTT+TGG | + | chr8_2:53495789-53495808 | Msa1255110:intron | 35.0% | |
| AACATATATACAGCAGCCAA+AGG | - | chr8_2:53495808-53495827 | None:intergenic | 35.0% | |
| TAATTCCTTCTTTCACTTGC+AGG | + | chr8_2:53495858-53495877 | Msa1255110:intron | 35.0% | |
| !!! | TTCTGTTCACTGCTGTTTTT+TGG | - | chr8_2:53495982-53496001 | None:intergenic | 35.0% |
| TAGTGGGAGTTACAATCATA+TGG | - | chr8_2:53496165-53496184 | None:intergenic | 35.0% | |
| ATTACAATCCACTCACTAGT+GGG | - | chr8_2:53496181-53496200 | None:intergenic | 35.0% | |
| AGTAGTACTATCAACAGCAG+TGG | + | chr8_2:53495953-53495972 | Msa1255110:three_prime_UTR | 40.0% | |
| TCATATGGAAGGTTAAGGGA+TGG | - | chr8_2:53496150-53496169 | None:intergenic | 40.0% | |
| GGGAGTTACAATCATATGGA+AGG | - | chr8_2:53496161-53496180 | None:intergenic | 40.0% | |
| CATTACAATCCACTCACTAG+TGG | - | chr8_2:53496182-53496201 | None:intergenic | 40.0% | |
| CCCATTTCAAGAACAAGATG+AGG | - | chr8_2:53495381-53495400 | None:intergenic | 40.0% | |
| AGTAGTACTATCAACAGCAG+TGG | + | chr8_2:53495953-53495972 | Msa1255110:three_prime_UTR | 40.0% | |
| TCATATGGAAGGTTAAGGGA+TGG | - | chr8_2:53496150-53496169 | None:intergenic | 40.0% | |
| GGGAGTTACAATCATATGGA+AGG | - | chr8_2:53496161-53496180 | None:intergenic | 40.0% | |
| CATTACAATCCACTCACTAG+TGG | - | chr8_2:53496182-53496201 | None:intergenic | 40.0% | |
| ! | GCAACATTCTGCCACTTATC+TGG | - | chr8_2:53495471-53495490 | None:intergenic | 45.0% |
| CAGAATGTTGCCAACATGGT+GGG | + | chr8_2:53495480-53495499 | Msa1255110:CDS | 45.0% | |
| AGAATGTTGCCAACATGGTG+GGG | + | chr8_2:53495481-53495500 | Msa1255110:CDS | 45.0% | |
| ! | AACTGATTTCCCCACCATGT+TGG | - | chr8_2:53495493-53495512 | None:intergenic | 45.0% |
| TGCGCCTAACATCTTCTTTG+AGG | - | chr8_2:53495542-53495561 | None:intergenic | 45.0% | |
| GAGAACCTGCAAGTGAAAGA+AGG | - | chr8_2:53495866-53495885 | None:intergenic | 45.0% | |
| ! | TTGGTAGCTTGCAATGCAGT+TGG | - | chr8_2:53496012-53496031 | None:intergenic | 45.0% |
| AGGGATGGACATCCACTAAT+AGG | - | chr8_2:53496135-53496154 | None:intergenic | 45.0% | |
| TTGTAACTCCCACTAGTGAG+TGG | + | chr8_2:53496170-53496189 | Msa1255110:three_prime_UTR | 45.0% | |
| ! | GCAACATTCTGCCACTTATC+TGG | - | chr8_2:53495471-53495490 | None:intergenic | 45.0% |
| CAGAATGTTGCCAACATGGT+GGG | + | chr8_2:53495480-53495499 | Msa1255110:CDS | 45.0% | |
| AGAATGTTGCCAACATGGTG+GGG | + | chr8_2:53495481-53495500 | Msa1255110:CDS | 45.0% | |
| ! | AACTGATTTCCCCACCATGT+TGG | - | chr8_2:53495493-53495512 | None:intergenic | 45.0% |
| TGCGCCTAACATCTTCTTTG+AGG | - | chr8_2:53495542-53495561 | None:intergenic | 45.0% | |
| GAGAACCTGCAAGTGAAAGA+AGG | - | chr8_2:53495866-53495885 | None:intergenic | 45.0% | |
| ! | TTGGTAGCTTGCAATGCAGT+TGG | - | chr8_2:53496012-53496031 | None:intergenic | 45.0% |
| AGGGATGGACATCCACTAAT+AGG | - | chr8_2:53496135-53496154 | None:intergenic | 45.0% | |
| TTGTAACTCCCACTAGTGAG+TGG | + | chr8_2:53496170-53496189 | Msa1255110:three_prime_UTR | 45.0% | |
| TGGGATCAACTTGGACTCCA+AGG | + | chr8_2:53495397-53495416 | Msa1255110:CDS | 50.0% | |
| GTGGCAGAATGTTGCCAACA+TGG | + | chr8_2:53495476-53495495 | Msa1255110:CDS | 50.0% | |
| GCAGAATGTTGCCAACATGG+TGG | + | chr8_2:53495479-53495498 | Msa1255110:CDS | 50.0% | |
| GATGTTAGGCGCATTGAGCA+TGG | + | chr8_2:53495549-53495568 | Msa1255110:CDS | 50.0% | |
| TGGGATCAACTTGGACTCCA+AGG | + | chr8_2:53495397-53495416 | Msa1255110:CDS | 50.0% | |
| GTGGCAGAATGTTGCCAACA+TGG | + | chr8_2:53495476-53495495 | Msa1255110:CDS | 50.0% | |
| GCAGAATGTTGCCAACATGG+TGG | + | chr8_2:53495479-53495498 | Msa1255110:CDS | 50.0% | |
| GATGTTAGGCGCATTGAGCA+TGG | + | chr8_2:53495549-53495568 | Msa1255110:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 53495379 | 53496305 | 53495379 | ID=Msa1255110;Name=Msa1255110 |
| chr8_2 | mRNA | 53495379 | 53496305 | 53495379 | ID=Msa1255110-mRNA-1;Parent=Msa1255110;Name=Msa1255110-mRNA-1;_AED=0.11;_eAED=0.39;_QI=0|0|0.5|1|0|0|2|371|83 |
| chr8_2 | exon | 53495379 | 53495575 | 53495379 | ID=Msa1255110-mRNA-1:exon:16579;Parent=Msa1255110-mRNA-1 |
| chr8_2 | exon | 53495880 | 53496305 | 53495880 | ID=Msa1255110-mRNA-1:exon:16580;Parent=Msa1255110-mRNA-1 |
| chr8_2 | CDS | 53495379 | 53495575 | 53495379 | ID=Msa1255110-mRNA-1:cds;Parent=Msa1255110-mRNA-1 |
| chr8_2 | CDS | 53495880 | 53495934 | 53495880 | ID=Msa1255110-mRNA-1:cds;Parent=Msa1255110-mRNA-1 |
| chr8_2 | three_prime_UTR | 53495935 | 53496305 | 53495935 | ID=Msa1255110-mRNA-1:three_prime_utr;Parent=Msa1255110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
