Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295560 | XP_003629431.2 | 71.186 | 59 | 16 | 1 | 26 | 83 | 1 | 59 | 3.23e-16 | 76.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295560 | I3T8Y0 | 71.186 | 59 | 16 | 1 | 26 | 83 | 1 | 59 | 1.54e-16 | 76.6 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054760 | Msa1295560 | 0.813205 | 2.879976e-51 | -8.615850e-47 |
| Msa0072710 | Msa1295560 | 0.835446 | 1.669843e-56 | -8.615850e-47 |
| Msa0072910 | Msa1295560 | 0.810062 | 1.389129e-50 | -8.615850e-47 |
| Msa0101150 | Msa1295560 | 0.820482 | 6.702970e-53 | -8.615850e-47 |
| Msa0101210 | Msa1295560 | 0.819722 | 1.000532e-52 | -8.615850e-47 |
| Msa0115950 | Msa1295560 | 0.803845 | 2.869915e-49 | -8.615850e-47 |
| Msa0607440 | Msa1295560 | 0.829680 | 4.494963e-55 | -8.615850e-47 |
| Msa0621380 | Msa1295560 | 0.841869 | 3.657498e-58 | -8.615850e-47 |
| Msa0621390 | Msa1295560 | 0.801778 | 7.667849e-49 | -8.615850e-47 |
| Msa0660880 | Msa1295560 | -0.816418 | 5.588452e-52 | -8.615850e-47 |
| Msa0712100 | Msa1295560 | 0.805078 | 1.587574e-49 | -8.615850e-47 |
| Msa0716740 | Msa1295560 | -0.809274 | 2.051838e-50 | -8.615850e-47 |
| Msa0744070 | Msa1295560 | 0.812059 | 5.129639e-51 | -8.615850e-47 |
| Msa0752580 | Msa1295560 | 0.809861 | 1.535174e-50 | -8.615850e-47 |
| Msa0753530 | Msa1295560 | 0.811666 | 6.245486e-51 | -8.615850e-47 |
| Msa0754500 | Msa1295560 | 0.809706 | 1.657581e-50 | -8.615850e-47 |
| Msa0761930 | Msa1295560 | 0.803937 | 2.745748e-49 | -8.615850e-47 |
| Msa0766040 | Msa1295560 | 0.808557 | 2.921683e-50 | -8.615850e-47 |
| Msa0799290 | Msa1295560 | -0.821091 | 4.855721e-53 | -8.615850e-47 |
| Msa0825300 | Msa1295560 | 0.807556 | 4.772554e-50 | -8.615850e-47 |
| Msa0836200 | Msa1295560 | 0.820727 | 5.886869e-53 | -8.615850e-47 |
| Msa0837510 | Msa1295560 | -0.821484 | 3.939265e-53 | -8.615850e-47 |
| Msa0121080 | Msa1295560 | 0.803357 | 3.622909e-49 | -8.615850e-47 |
| Msa0206600 | Msa1295560 | 0.819362 | 1.208535e-52 | -8.615850e-47 |
| Msa1233770 | Msa1295560 | 0.809408 | 1.920877e-50 | -8.615850e-47 |
| Msa1254990 | Msa1295560 | 0.800257 | 1.568536e-48 | -8.615850e-47 |
| Msa1255110 | Msa1295560 | 0.993720 | 9.781388e-202 | -8.615850e-47 |
| Msa1255120 | Msa1295560 | 0.843108 | 1.715549e-58 | -8.615850e-47 |
| Msa1263930 | Msa1295560 | 0.801525 | 8.639992e-49 | -8.615850e-47 |
| Msa1279240 | Msa1295560 | 0.801329 | 9.477320e-49 | -8.615850e-47 |
| Msa1295560 | Msa1295570 | 0.842883 | 1.969223e-58 | -8.615850e-47 |
| Msa1295560 | Msa1330280 | 0.800294 | 1.541640e-48 | -8.615850e-47 |
| Msa1295560 | Msa1353270 | 0.804778 | 1.834240e-49 | -8.615850e-47 |
| Msa1295560 | Msa1357380 | 0.806763 | 7.023240e-50 | -8.615850e-47 |
| Msa1295560 | Msa1369900 | 0.811870 | 5.637846e-51 | -8.615850e-47 |
| Msa1295560 | Msa1408190 | 0.812199 | 4.779973e-51 | -8.615850e-47 |
| Msa1295560 | Msa1448990 | 0.813119 | 3.008014e-51 | -8.615850e-47 |
| Msa1295560 | Msa1450420 | 0.827772 | 1.300965e-54 | -8.615850e-47 |
| Msa0365360 | Msa1295560 | 0.808508 | 2.992869e-50 | -8.615850e-47 |
| Msa0372250 | Msa1295560 | 0.825086 | 5.677218e-54 | -8.615850e-47 |
| Msa0416000 | Msa1295560 | 0.832605 | 8.592101e-56 | -8.615850e-47 |
| Msa0421100 | Msa1295560 | 0.821393 | 4.134902e-53 | -8.615850e-47 |
| Msa0423590 | Msa1295560 | 0.810493 | 1.121332e-50 | -8.615850e-47 |
| Msa0423600 | Msa1295560 | 0.808741 | 2.668524e-50 | -8.615850e-47 |
| Msa0438440 | Msa1295560 | 0.814253 | 1.692398e-51 | -8.615850e-47 |
| Msa0457370 | Msa1295560 | 0.803054 | 4.185907e-49 | -8.615850e-47 |
| Msa0471080 | Msa1295560 | 0.809472 | 1.861057e-50 | -8.615850e-47 |
| Msa0475740 | Msa1295560 | 0.823724 | 1.187025e-53 | -8.615850e-47 |
| Msa1030380 | Msa1295560 | -0.809160 | 2.170292e-50 | -8.615850e-47 |
| Msa1033670 | Msa1295560 | 0.800406 | 1.462781e-48 | -8.615850e-47 |
| Msa1069390 | Msa1295560 | -0.805807 | 1.117041e-49 | -8.615850e-47 |
| Msa1081600 | Msa1295560 | 0.810773 | 9.754719e-51 | -8.615850e-47 |
| Msa1081700 | Msa1295560 | 0.818283 | 2.125474e-52 | -8.615850e-47 |
| Msa1092430 | Msa1295560 | 0.806465 | 8.118987e-50 | -8.615850e-47 |
| Msa0241580 | Msa1295560 | 0.817477 | 3.232328e-52 | -8.615850e-47 |
| Msa0258380 | Msa1295560 | 0.802021 | 6.834295e-49 | -8.615850e-47 |
| Msa0279460 | Msa1295560 | 0.805152 | 1.532341e-49 | -8.615850e-47 |
| Msa0279490 | Msa1295560 | 0.819085 | 1.397713e-52 | -8.615850e-47 |
| Msa0312780 | Msa1295560 | 0.806855 | 6.715634e-50 | -8.615850e-47 |
| Msa0315010 | Msa1295560 | 0.801328 | 9.483559e-49 | -8.615850e-47 |
| Msa0319060 | Msa1295560 | 0.807833 | 4.166755e-50 | -8.615850e-47 |
| Msa0319090 | Msa1295560 | 0.818148 | 2.279464e-52 | -8.615850e-47 |
| Msa0352200 | Msa1295560 | 0.819793 | 9.638933e-53 | -8.615850e-47 |
| Msa1161520 | Msa1295560 | 0.803749 | 3.005450e-49 | -8.615850e-47 |
| Msa1166370 | Msa1295560 | 0.805769 | 1.137756e-49 | -8.615850e-47 |
| Msa1184640 | Msa1295560 | 0.805109 | 1.564147e-49 | -8.615850e-47 |
| Msa1208250 | Msa1295560 | 0.807324 | 5.342820e-50 | -8.615850e-47 |
| Msa0515680 | Msa1295560 | 0.800049 | 1.729496e-48 | -8.615850e-47 |
| Msa0568810 | Msa1295560 | 0.812529 | 4.048729e-51 | -8.615850e-47 |
| Msa0583930 | Msa1295560 | 0.810761 | 9.816543e-51 | -8.615850e-47 |
| Msa0846180 | Msa1295560 | 0.800005 | 1.765732e-48 | -8.615850e-47 |
| Msa0854560 | Msa1295560 | 0.808272 | 3.359623e-50 | -8.615850e-47 |
| Msa0875130 | Msa1295560 | 0.848918 | 4.511609e-60 | -8.615850e-47 |
| Msa0931730 | Msa1295560 | 0.801547 | 8.551671e-49 | -8.615850e-47 |
| Msa0968450 | Msa1295560 | 0.807225 | 5.609355e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAATATAGGTCCTATTTAT+AGG | 0.244589 | 8_3:-53698879 | None:intergenic |
| CCTATATGTGTCCTATAAAT+AGG | 0.265061 | 8_3:+53698868 | Msa1295560:three_prime_UTR |
| GCAACATTCTGCCACTTATC+TGG | 0.266066 | 8_3:-53698120 | None:intergenic |
| TGTAAATACATGGACATAAT+TGG | 0.271100 | 8_3:-53698680 | None:intergenic |
| AATCAGTTGAAGATGTTAAA+AGG | 0.300561 | 8_3:+53698157 | Msa1295560:CDS |
| AGCTCATCTTGTTCTTGAAA+TGG | 0.307339 | 8_3:+53698029 | None:intergenic |
| AACAATAGATAAATTAATAC+TGG | 0.349088 | 8_3:-53698752 | None:intergenic |
| ATAGGACACATATAGGTAAA+TGG | 0.360529 | 8_3:-53698861 | None:intergenic |
| TACAATCATATGGAAGGTTA+AGG | 0.385469 | 8_3:-53698804 | None:intergenic |
| GTGTCATTACATTGCAATAT+AGG | 0.394320 | 8_3:-53698892 | None:intergenic |
| CAAACAATTTGAAAGAGCTT+TGG | 0.396764 | 8_3:+53698077 | Msa1295560:CDS |
| TTTGTAAGTAAATTGCTTCA+AGG | 0.401631 | 8_3:-53698712 | None:intergenic |
| TGCGCCTAACATCTTCTTTG+AGG | 0.404699 | 8_3:-53698191 | None:intergenic |
| GCTCATCTTGTTCTTGAAAT+GGG | 0.405032 | 8_3:+53698030 | None:intergenic |
| GTTATGAATATACCTATTAG+TGG | 0.422166 | 8_3:+53698772 | Msa1295560:three_prime_UTR |
| AGGGATGGACATCCACTAAT+AGG | 0.424190 | 8_3:-53698784 | None:intergenic |
| CCTATTTATAGGACACATAT+AGG | 0.451071 | 8_3:-53698868 | None:intergenic |
| TAGTGGGAGTTACAATCATA+TGG | 0.457289 | 8_3:-53698814 | None:intergenic |
| TGGGATCAACTTGGACTCCA+AGG | 0.513093 | 8_3:+53698049 | Msa1295560:CDS |
| ACAATCATATGGAAGGTTAA+GGG | 0.515996 | 8_3:-53698803 | None:intergenic |
| TTGGTAGCTTGCAATGCAGT+TGG | 0.521852 | 8_3:-53698661 | None:intergenic |
| AGATCCTCAAAGAAGATGTT+AGG | 0.522074 | 8_3:+53698187 | Msa1295560:CDS |
| TTCTTGAAATGGGATCAACT+TGG | 0.536988 | 8_3:+53698040 | Msa1295560:CDS |
| ATAGAGATTCTCCAGATAAG+TGG | 0.553229 | 8_3:+53698109 | Msa1295560:CDS |
| CATTACAATCCACTCACTAG+TGG | 0.573179 | 8_3:-53698831 | None:intergenic |
| AACTGATTTCCCCACCATGT+TGG | 0.577684 | 8_3:-53698142 | None:intergenic |
| GATGTTAGGCGCATTGAGCA+TGG | 0.583089 | 8_3:+53698201 | Msa1295560:CDS |
| GGGAGTTACAATCATATGGA+AGG | 0.611155 | 8_3:-53698810 | None:intergenic |
| TCATATGGAAGGTTAAGGGA+TGG | 0.617562 | 8_3:-53698799 | None:intergenic |
| GTGGCAGAATGTTGCCAACA+TGG | 0.629175 | 8_3:+53698128 | Msa1295560:CDS |
| ATTACAATCCACTCACTAGT+GGG | 0.631431 | 8_3:-53698830 | None:intergenic |
| CAGAATGTTGCCAACATGGT+GGG | 0.631728 | 8_3:+53698132 | Msa1295560:CDS |
| TTGTAACTCCCACTAGTGAG+TGG | 0.632254 | 8_3:+53698822 | Msa1295560:three_prime_UTR |
| AGTAGTACTATCAACAGCAG+TGG | 0.647471 | 8_3:+53698605 | Msa1295560:three_prime_UTR |
| AGAATGTTGCCAACATGGTG+GGG | 0.648486 | 8_3:+53698133 | Msa1295560:CDS |
| GCAGAATGTTGCCAACATGG+TGG | 0.688195 | 8_3:+53698131 | Msa1295560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTACTTATTAATTAACTA+TGG | - | chr8_3:53698576-53698595 | None:intergenic | 10.0% |
| !!! | TTTTACTTATTAATTAACTA+TGG | - | chr8_3:53698576-53698595 | None:intergenic | 10.0% |
| !! | GAAAAAAAAATGTAAATACA+TGG | - | chr8_3:53698693-53698712 | None:intergenic | 15.0% |
| !! | AACAATAGATAAATTAATAC+TGG | - | chr8_3:53698755-53698774 | None:intergenic | 15.0% |
| !! | GAAAAAAAAATGTAAATACA+TGG | - | chr8_3:53698693-53698712 | None:intergenic | 15.0% |
| !! | AACAATAGATAAATTAATAC+TGG | - | chr8_3:53698755-53698774 | None:intergenic | 15.0% |
| !! | TGATGTGAATAAAAAAATGT+GGG | - | chr8_3:53698390-53698409 | None:intergenic | 20.0% |
| !! | ATGATGTGAATAAAAAAATG+TGG | - | chr8_3:53698391-53698410 | None:intergenic | 20.0% |
| !! | TGATGTGAATAAAAAAATGT+GGG | - | chr8_3:53698390-53698409 | None:intergenic | 20.0% |
| !! | ATGATGTGAATAAAAAAATG+TGG | - | chr8_3:53698391-53698410 | None:intergenic | 20.0% |
| ! | AATCAGTTGAAGATGTTAAA+AGG | + | chr8_3:53698157-53698176 | Msa1295560:CDS | 25.0% |
| ! | TAGCATTATTTGTTCTGTAA+GGG | - | chr8_3:53698239-53698258 | None:intergenic | 25.0% |
| ! | TTAGCATTATTTGTTCTGTA+AGG | - | chr8_3:53698240-53698259 | None:intergenic | 25.0% |
| ! | GGATGTGTATAAAAAAATGT+GGG | - | chr8_3:53698312-53698331 | None:intergenic | 25.0% |
| ! | TGTAAATACATGGACATAAT+TGG | - | chr8_3:53698683-53698702 | None:intergenic | 25.0% |
| ! | TTTGTAAGTAAATTGCTTCA+AGG | - | chr8_3:53698715-53698734 | None:intergenic | 25.0% |
| ! | GTTATGAATATACCTATTAG+TGG | + | chr8_3:53698772-53698791 | Msa1295560:three_prime_UTR | 25.0% |
| ! | AATCAGTTGAAGATGTTAAA+AGG | + | chr8_3:53698157-53698176 | Msa1295560:CDS | 25.0% |
| ! | TAGCATTATTTGTTCTGTAA+GGG | - | chr8_3:53698239-53698258 | None:intergenic | 25.0% |
| ! | TTAGCATTATTTGTTCTGTA+AGG | - | chr8_3:53698240-53698259 | None:intergenic | 25.0% |
| ! | GGATGTGTATAAAAAAATGT+GGG | - | chr8_3:53698312-53698331 | None:intergenic | 25.0% |
| ! | TGTAAATACATGGACATAAT+TGG | - | chr8_3:53698683-53698702 | None:intergenic | 25.0% |
| ! | TTTGTAAGTAAATTGCTTCA+AGG | - | chr8_3:53698715-53698734 | None:intergenic | 25.0% |
| ! | GTTATGAATATACCTATTAG+TGG | + | chr8_3:53698772-53698791 | Msa1295560:three_prime_UTR | 25.0% |
| !!! | TCAAATTGTTTGTTTTGCCT+TGG | - | chr8_3:53698069-53698088 | None:intergenic | 30.0% |
| CAAACAATTTGAAAGAGCTT+TGG | + | chr8_3:53698077-53698096 | Msa1295560:CDS | 30.0% | |
| !!! | CCTTTTGTTATTAAAGACCA+AGG | - | chr8_3:53698272-53698291 | None:intergenic | 30.0% |
| ! | CCTTGGTCTTTAATAACAAA+AGG | + | chr8_3:53698269-53698288 | Msa1295560:intron | 30.0% |
| CGGATGTGTATAAAAAAATG+TGG | - | chr8_3:53698313-53698332 | None:intergenic | 30.0% | |
| ! | TCTTCAATTTTGTTGGATTC+TGG | - | chr8_3:53698544-53698563 | None:intergenic | 30.0% |
| ! | ACTTGAGTCTTCAATTTTGT+TGG | - | chr8_3:53698551-53698570 | None:intergenic | 30.0% |
| ACAATCATATGGAAGGTTAA+GGG | - | chr8_3:53698806-53698825 | None:intergenic | 30.0% | |
| TACAATCATATGGAAGGTTA+AGG | - | chr8_3:53698807-53698826 | None:intergenic | 30.0% | |
| ATAGGACACATATAGGTAAA+TGG | - | chr8_3:53698864-53698883 | None:intergenic | 30.0% | |
| CCTATTTATAGGACACATAT+AGG | - | chr8_3:53698871-53698890 | None:intergenic | 30.0% | |
| CCTATATGTGTCCTATAAAT+AGG | + | chr8_3:53698868-53698887 | Msa1295560:three_prime_UTR | 30.0% | |
| GCAATATAGGTCCTATTTAT+AGG | - | chr8_3:53698882-53698901 | None:intergenic | 30.0% | |
| ! | GTGTCATTACATTGCAATAT+AGG | - | chr8_3:53698895-53698914 | None:intergenic | 30.0% |
| !!! | TCAAATTGTTTGTTTTGCCT+TGG | - | chr8_3:53698069-53698088 | None:intergenic | 30.0% |
| CAAACAATTTGAAAGAGCTT+TGG | + | chr8_3:53698077-53698096 | Msa1295560:CDS | 30.0% | |
| !!! | CCTTTTGTTATTAAAGACCA+AGG | - | chr8_3:53698272-53698291 | None:intergenic | 30.0% |
| ! | CCTTGGTCTTTAATAACAAA+AGG | + | chr8_3:53698269-53698288 | Msa1295560:intron | 30.0% |
| CGGATGTGTATAAAAAAATG+TGG | - | chr8_3:53698313-53698332 | None:intergenic | 30.0% | |
| ! | TCTTCAATTTTGTTGGATTC+TGG | - | chr8_3:53698544-53698563 | None:intergenic | 30.0% |
| ! | ACTTGAGTCTTCAATTTTGT+TGG | - | chr8_3:53698551-53698570 | None:intergenic | 30.0% |
| ACAATCATATGGAAGGTTAA+GGG | - | chr8_3:53698806-53698825 | None:intergenic | 30.0% | |
| TACAATCATATGGAAGGTTA+AGG | - | chr8_3:53698807-53698826 | None:intergenic | 30.0% | |
| ATAGGACACATATAGGTAAA+TGG | - | chr8_3:53698864-53698883 | None:intergenic | 30.0% | |
| CCTATTTATAGGACACATAT+AGG | - | chr8_3:53698871-53698890 | None:intergenic | 30.0% | |
| CCTATATGTGTCCTATAAAT+AGG | + | chr8_3:53698868-53698887 | Msa1295560:three_prime_UTR | 30.0% | |
| GCAATATAGGTCCTATTTAT+AGG | - | chr8_3:53698882-53698901 | None:intergenic | 30.0% | |
| ! | GTGTCATTACATTGCAATAT+AGG | - | chr8_3:53698895-53698914 | None:intergenic | 30.0% |
| TTCTTGAAATGGGATCAACT+TGG | + | chr8_3:53698040-53698059 | Msa1295560:CDS | 35.0% | |
| ATAGAGATTCTCCAGATAAG+TGG | + | chr8_3:53698109-53698128 | Msa1295560:CDS | 35.0% | |
| AGATCCTCAAAGAAGATGTT+AGG | + | chr8_3:53698187-53698206 | Msa1295560:CDS | 35.0% | |
| AATGCTAATAACTGAGACCT+TGG | + | chr8_3:53698252-53698271 | Msa1295560:intron | 35.0% | |
| AGATTCTGTACAAGATTGCA+CGG | - | chr8_3:53698333-53698352 | None:intergenic | 35.0% | |
| TTTAGTATAGCTACAGCCTT+TGG | + | chr8_3:53698441-53698460 | Msa1295560:intron | 35.0% | |
| AACATATATACAGCAGCCAA+AGG | - | chr8_3:53698460-53698479 | None:intergenic | 35.0% | |
| TAATTCCTTCTTTCACTTGC+AGG | + | chr8_3:53698510-53698529 | Msa1295560:intron | 35.0% | |
| !!! | TTCTGTTCACTGCTGTTTTT+TGG | - | chr8_3:53698634-53698653 | None:intergenic | 35.0% |
| TAGTGGGAGTTACAATCATA+TGG | - | chr8_3:53698817-53698836 | None:intergenic | 35.0% | |
| ATTACAATCCACTCACTAGT+GGG | - | chr8_3:53698833-53698852 | None:intergenic | 35.0% | |
| TTCTTGAAATGGGATCAACT+TGG | + | chr8_3:53698040-53698059 | Msa1295560:CDS | 35.0% | |
| ATAGAGATTCTCCAGATAAG+TGG | + | chr8_3:53698109-53698128 | Msa1295560:CDS | 35.0% | |
| AGATCCTCAAAGAAGATGTT+AGG | + | chr8_3:53698187-53698206 | Msa1295560:CDS | 35.0% | |
| AATGCTAATAACTGAGACCT+TGG | + | chr8_3:53698252-53698271 | Msa1295560:intron | 35.0% | |
| AGATTCTGTACAAGATTGCA+CGG | - | chr8_3:53698333-53698352 | None:intergenic | 35.0% | |
| TTTAGTATAGCTACAGCCTT+TGG | + | chr8_3:53698441-53698460 | Msa1295560:intron | 35.0% | |
| AACATATATACAGCAGCCAA+AGG | - | chr8_3:53698460-53698479 | None:intergenic | 35.0% | |
| TAATTCCTTCTTTCACTTGC+AGG | + | chr8_3:53698510-53698529 | Msa1295560:intron | 35.0% | |
| !!! | TTCTGTTCACTGCTGTTTTT+TGG | - | chr8_3:53698634-53698653 | None:intergenic | 35.0% |
| TAGTGGGAGTTACAATCATA+TGG | - | chr8_3:53698817-53698836 | None:intergenic | 35.0% | |
| ATTACAATCCACTCACTAGT+GGG | - | chr8_3:53698833-53698852 | None:intergenic | 35.0% | |
| AGTAGTACTATCAACAGCAG+TGG | + | chr8_3:53698605-53698624 | Msa1295560:three_prime_UTR | 40.0% | |
| TCATATGGAAGGTTAAGGGA+TGG | - | chr8_3:53698802-53698821 | None:intergenic | 40.0% | |
| GGGAGTTACAATCATATGGA+AGG | - | chr8_3:53698813-53698832 | None:intergenic | 40.0% | |
| CATTACAATCCACTCACTAG+TGG | - | chr8_3:53698834-53698853 | None:intergenic | 40.0% | |
| CCCATTTCAAGAACAAGATG+AGG | - | chr8_3:53698033-53698052 | None:intergenic | 40.0% | |
| AGTAGTACTATCAACAGCAG+TGG | + | chr8_3:53698605-53698624 | Msa1295560:three_prime_UTR | 40.0% | |
| TCATATGGAAGGTTAAGGGA+TGG | - | chr8_3:53698802-53698821 | None:intergenic | 40.0% | |
| GGGAGTTACAATCATATGGA+AGG | - | chr8_3:53698813-53698832 | None:intergenic | 40.0% | |
| CATTACAATCCACTCACTAG+TGG | - | chr8_3:53698834-53698853 | None:intergenic | 40.0% | |
| ! | GCAACATTCTGCCACTTATC+TGG | - | chr8_3:53698123-53698142 | None:intergenic | 45.0% |
| CAGAATGTTGCCAACATGGT+GGG | + | chr8_3:53698132-53698151 | Msa1295560:CDS | 45.0% | |
| AGAATGTTGCCAACATGGTG+GGG | + | chr8_3:53698133-53698152 | Msa1295560:CDS | 45.0% | |
| ! | AACTGATTTCCCCACCATGT+TGG | - | chr8_3:53698145-53698164 | None:intergenic | 45.0% |
| TGCGCCTAACATCTTCTTTG+AGG | - | chr8_3:53698194-53698213 | None:intergenic | 45.0% | |
| GAGAACCTGCAAGTGAAAGA+AGG | - | chr8_3:53698518-53698537 | None:intergenic | 45.0% | |
| ! | TTGGTAGCTTGCAATGCAGT+TGG | - | chr8_3:53698664-53698683 | None:intergenic | 45.0% |
| AGGGATGGACATCCACTAAT+AGG | - | chr8_3:53698787-53698806 | None:intergenic | 45.0% | |
| TTGTAACTCCCACTAGTGAG+TGG | + | chr8_3:53698822-53698841 | Msa1295560:three_prime_UTR | 45.0% | |
| ! | GCAACATTCTGCCACTTATC+TGG | - | chr8_3:53698123-53698142 | None:intergenic | 45.0% |
| CAGAATGTTGCCAACATGGT+GGG | + | chr8_3:53698132-53698151 | Msa1295560:CDS | 45.0% | |
| AGAATGTTGCCAACATGGTG+GGG | + | chr8_3:53698133-53698152 | Msa1295560:CDS | 45.0% | |
| ! | AACTGATTTCCCCACCATGT+TGG | - | chr8_3:53698145-53698164 | None:intergenic | 45.0% |
| TGCGCCTAACATCTTCTTTG+AGG | - | chr8_3:53698194-53698213 | None:intergenic | 45.0% | |
| GAGAACCTGCAAGTGAAAGA+AGG | - | chr8_3:53698518-53698537 | None:intergenic | 45.0% | |
| ! | TTGGTAGCTTGCAATGCAGT+TGG | - | chr8_3:53698664-53698683 | None:intergenic | 45.0% |
| AGGGATGGACATCCACTAAT+AGG | - | chr8_3:53698787-53698806 | None:intergenic | 45.0% | |
| TTGTAACTCCCACTAGTGAG+TGG | + | chr8_3:53698822-53698841 | Msa1295560:three_prime_UTR | 45.0% | |
| TGGGATCAACTTGGACTCCA+AGG | + | chr8_3:53698049-53698068 | Msa1295560:CDS | 50.0% | |
| GTGGCAGAATGTTGCCAACA+TGG | + | chr8_3:53698128-53698147 | Msa1295560:CDS | 50.0% | |
| GCAGAATGTTGCCAACATGG+TGG | + | chr8_3:53698131-53698150 | Msa1295560:CDS | 50.0% | |
| GATGTTAGGCGCATTGAGCA+TGG | + | chr8_3:53698201-53698220 | Msa1295560:CDS | 50.0% | |
| TGGGATCAACTTGGACTCCA+AGG | + | chr8_3:53698049-53698068 | Msa1295560:CDS | 50.0% | |
| GTGGCAGAATGTTGCCAACA+TGG | + | chr8_3:53698128-53698147 | Msa1295560:CDS | 50.0% | |
| GCAGAATGTTGCCAACATGG+TGG | + | chr8_3:53698131-53698150 | Msa1295560:CDS | 50.0% | |
| GATGTTAGGCGCATTGAGCA+TGG | + | chr8_3:53698201-53698220 | Msa1295560:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 53698031 | 53698957 | 53698031 | ID=Msa1295560;Name=Msa1295560 |
| chr8_3 | mRNA | 53698031 | 53698957 | 53698031 | ID=Msa1295560-mRNA-1;Parent=Msa1295560;Name=Msa1295560-mRNA-1;_AED=0.11;_eAED=0.39;_QI=0|0|0.5|1|0|0|2|371|83 |
| chr8_3 | exon | 53698031 | 53698227 | 53698031 | ID=Msa1295560-mRNA-1:exon:15453;Parent=Msa1295560-mRNA-1 |
| chr8_3 | exon | 53698532 | 53698957 | 53698532 | ID=Msa1295560-mRNA-1:exon:15454;Parent=Msa1295560-mRNA-1 |
| chr8_3 | CDS | 53698031 | 53698227 | 53698031 | ID=Msa1295560-mRNA-1:cds;Parent=Msa1295560-mRNA-1 |
| chr8_3 | CDS | 53698532 | 53698586 | 53698532 | ID=Msa1295560-mRNA-1:cds;Parent=Msa1295560-mRNA-1 |
| chr8_3 | three_prime_UTR | 53698587 | 53698957 | 53698587 | ID=Msa1295560-mRNA-1:three_prime_utr;Parent=Msa1295560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
