AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0342620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0342620 MtrunA17_Chr2g0323531 97.569 288 6 1 1 288 1 287 0.0 575
Msa0342620 MtrunA17_Chr4g0022631 75.610 287 67 3 1 284 1 287 4.32e-154 432
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0342620 AT2G20890.1 67.260 281 84 4 3 282 5 278 6.55e-131 374

Find 96 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATTCGACATCAATTTA+TGG 0.149475 3_1:+535589 Msa0342620:three_prime_UTR
TGGCAATTCTGCTTCTAAAA+TGG 0.248095 3_1:+532624 Msa0342620:CDS
CCAACTCAAGAAGGCGAAAA+AGG 0.290072 3_1:-534325 None:intergenic
ATTACACGGCCTTATGTATC+AGG 0.295054 3_1:+535701 Msa0342620:three_prime_UTR
AATTTACTATCATCAGTTAT+TGG 0.300905 3_1:+535616 Msa0342620:three_prime_UTR
GTACTTTCAGTTTCTAGTTA+TGG 0.302790 3_1:+532456 Msa0342620:exon
GAGTAAATAACTTTATATTT+CGG 0.316353 3_1:+535558 Msa0342620:three_prime_UTR
CCCTTCAACTTCTCCTTCTC+TGG 0.328222 3_1:-534231 None:intergenic
GACTCAGAAAATATCCTTCA+TGG 0.330991 3_1:-532402 None:intergenic
GAGCCACAGAAGGCTAATAA+TGG 0.333096 3_1:+535235 Msa0342620:CDS
GTTCTGATATGTTTGGAATT+CGG 0.343615 3_1:+532566 Msa0342620:CDS
TCATGAAACCTGTATTGTTC+TGG 0.346032 3_1:-533700 None:intergenic
TACATAAGGCCGTGTAATAA+AGG 0.351531 3_1:-535696 None:intergenic
TACTCAGAATGTATGCCTTT+AGG 0.361473 3_1:-535540 None:intergenic
TATGATTCTGTATTTGCTCT+TGG 0.366606 3_1:+533580 Msa0342620:CDS
GCTTCAAGTTCTGATATGTT+TGG 0.372546 3_1:+532559 Msa0342620:CDS
GCTACCTTGTCTAAAATTGT+TGG 0.381994 3_1:-534362 None:intergenic
TGCAAAGAAGTTGGAAGATT+GGG 0.391763 3_1:+534169 Msa0342620:CDS
TTGGTCGTTTATATGCCTTT+AGG 0.392956 3_1:-533480 None:intergenic
CCTTCTATTATAAAGTTGTA+TGG 0.402693 3_1:+535664 Msa0342620:three_prime_UTR
CTCTTTAGCTTGAACCAGCT+TGG 0.406680 3_1:-534699 None:intergenic
AGCATATATTAATGCATTGA+AGG 0.411154 3_1:+533672 Msa0342620:CDS
GAAGAAGAAAAGAGAAGAAA+GGG 0.415256 3_1:+535210 Msa0342620:CDS
AGAAGAAGAAAAGAGAAGAA+AGG 0.421659 3_1:+535209 Msa0342620:CDS
TGCTTTCAAAACATTTGTGT+TGG 0.423270 3_1:-532345 None:intergenic
CAATGCATGTCTTCTGTCAC+AGG 0.424463 3_1:+532652 Msa0342620:CDS
CCATACAACTTTATAATAGA+AGG 0.425241 3_1:-535664 None:intergenic
AGCCACAGAAGGCTAATAAT+GGG 0.431472 3_1:+535236 Msa0342620:CDS
AGGAAGATCCAGAACAATAC+AGG 0.432189 3_1:+533692 Msa0342620:CDS
GAGCAAATACAGAATCATAT+TGG 0.436295 3_1:-533576 None:intergenic
ATGCAAAGAAGTTGGAAGAT+TGG 0.439138 3_1:+534168 Msa0342620:CDS
CGACAAAAGAAGCGTTGATC+GGG 0.440456 3_1:+534649 Msa0342620:CDS
TCGTATGCTGCTTTCCAAGC+TGG 0.444672 3_1:+534685 Msa0342620:CDS
ATGATTTCTCATACTGTACT+TGG 0.446409 3_1:+535392 Msa0342620:three_prime_UTR
CAGAGTAGATGCAAAGAAGT+TGG 0.448896 3_1:+534160 Msa0342620:intron
CAACTCAGTGGATTAAGAAA+AGG 0.464136 3_1:-535352 None:intergenic
AAGAAGCGTTGATCGGGACT+TGG 0.466265 3_1:+534655 Msa0342620:CDS
TTTCCCCGCTCAATTTGTAA+TGG 0.470303 3_1:-535260 None:intergenic
TTTGTCCTTCCTTTCCATGA+AGG 0.471047 3_1:+532388 Msa0342620:five_prime_UTR
TTGTAATTATTGTAAACCTA+TGG 0.471724 3_1:-535800 None:intergenic
TTTATGGCTTGTGAGTTCAA+TGG 0.472460 3_1:+535854 Msa0342620:three_prime_UTR
TTGTTATAGATACTAGGAAT+TGG 0.474724 3_1:-533499 None:intergenic
TATCTATAACAATGTGCTGC+AGG 0.485681 3_1:+533510 Msa0342620:CDS
GAAGAAAAGAGAAGAAAGGG+TGG 0.490264 3_1:+535213 Msa0342620:CDS
CTATGGCAATAACTCACACT+TGG 0.495906 3_1:-535783 None:intergenic
CAAGTGTGAGTTATTGCCAT+AGG 0.498366 3_1:+535784 Msa0342620:three_prime_UTR
GGCTCAAAACTCAACTTCAC+TGG 0.505541 3_1:+534196 Msa0342620:CDS
ATTAATATATGCTTTGAAGA+TGG 0.505650 3_1:-533662 None:intergenic
TAGGAAATTTAGCTTTGTCT+CGG 0.507415 3_1:-533461 None:intergenic
TAGCTTTGTCTCGGAAACGC+TGG 0.510906 3_1:-533452 None:intergenic
CACTGTCTATGATAAACTCA+TGG 0.515316 3_1:+533609 Msa0342620:CDS
TCGACAAAAGAAGCGTTGAT+CGG 0.519628 3_1:+534648 Msa0342620:CDS
AGAAAATATCCTTCATGGAA+AGG 0.520550 3_1:-532397 None:intergenic
AGCTTTGTCTCGGAAACGCT+GGG 0.521270 3_1:-533451 None:intergenic
TTGCATTTGCCAACTCAAGA+AGG 0.522030 3_1:-534334 None:intergenic
CATTGTGTTGGTGTTAGAGT+TGG 0.522081 3_1:+532604 Msa0342620:CDS
AATATCCTTCATGGAAAGGA+AGG 0.522272 3_1:-532393 None:intergenic
GACAAAGCTAAATTTCCTAA+AGG 0.527158 3_1:+533465 Msa0342620:CDS
TGCAAAGGGAATTTATTGAC+AGG 0.527306 3_1:+534723 Msa0342620:CDS
GGGGCCATTACAAATTGAGC+GGG 0.528047 3_1:+535256 Msa0342620:exon
GGAAGGACAAATTTCAGAGA+TGG 0.534270 3_1:-532376 None:intergenic
TCCAGAGAAGGAGAAGTTGA+AGG 0.535017 3_1:+534230 Msa0342620:CDS
GTCTATGATAAACTCATGGA+AGG 0.537912 3_1:+533613 Msa0342620:CDS
GAATGAAGACCTGATACATA+AGG 0.540387 3_1:-535710 None:intergenic
TTCAAGCTAAAGAGCTGCAA+AGG 0.544489 3_1:+534708 Msa0342620:CDS
TATGGCAATAACTCACACTT+GGG 0.551950 3_1:-535782 None:intergenic
GCCCCATTATTAGCCTTCTG+TGG 0.553177 3_1:-535238 None:intergenic
CCAGAGAAGGAGAAGTTGAA+GGG 0.554923 3_1:+534231 Msa0342620:CDS
AAAATAAATTTGTGACTGCA+AGG 0.563842 3_1:-535495 None:intergenic
TCATCTATTCCTTTATTACA+CGG 0.567946 3_1:+535687 Msa0342620:three_prime_UTR
AGAAAGGGTGGAGCCACAGA+AGG 0.570202 3_1:+535225 Msa0342620:CDS
TATAGTCGTTTCTTTGCAGT+AGG 0.573306 3_1:+534302 Msa0342620:CDS
TGAGAAGGGTGAACAAATTG+TGG 0.579520 3_1:-535444 None:intergenic
TCAAGCTAAAGAGCTGCAAA+GGG 0.583103 3_1:+534709 Msa0342620:CDS
TACATGCAAATTGTGTGAGA+AGG 0.585306 3_1:-535459 None:intergenic
GATTCCTCGTACCATTGTGT+TGG 0.585869 3_1:+532592 Msa0342620:CDS
GATTAAGAAAAGGCGTGTCA+AGG 0.595646 3_1:-535342 None:intergenic
ACTGTACTTGGTTTACATTG+TGG 0.597011 3_1:+535404 Msa0342620:three_prime_UTR
GAAGTTGGAAGATTGGGCTA+AGG 0.605561 3_1:+534175 Msa0342620:CDS
AGCACATTGTTATAGATACT+AGG 0.605595 3_1:-533505 None:intergenic
CAGAGAAGGAGAAGTTGAAG+GGG 0.608753 3_1:+534232 Msa0342620:CDS
ACATGCAAATTGTGTGAGAA+GGG 0.611893 3_1:-535458 None:intergenic
TGATCTTAATATGCACATTG+TGG 0.621344 3_1:-535740 None:intergenic
GGAAGGGTATTCTAGTGAAG+AGG 0.630073 3_1:+533630 Msa0342620:CDS
TTCTTGCTTATCCAACTCAG+TGG 0.633736 3_1:-535364 None:intergenic
ACATATCAGAACTTGAAGCA+AGG 0.636756 3_1:-532555 None:intergenic
AAGGATAAGAAATCTTCACT+TGG 0.639221 3_1:-535323 None:intergenic
GTCAACATAACAGCTTTGTG+CGG 0.651736 3_1:+534616 Msa0342620:intron
TTAATATGCACATTGTGGCA+TGG 0.655770 3_1:-535735 None:intergenic
TGGGGCCATTACAAATTGAG+CGG 0.656354 3_1:+535255 Msa0342620:exon
CAACTCTAACACCAACACAA+TGG 0.660091 3_1:-532603 None:intergenic
TCTATGATAAACTCATGGAA+GGG 0.662278 3_1:+533614 Msa0342620:CDS
GCCACAGAAGGCTAATAATG+GGG 0.663091 3_1:+535237 Msa0342620:CDS
AACACCAACACAATGGTACG+AGG 0.686845 3_1:-532596 None:intergenic
ATGGCAATAACTCACACTTG+GGG 0.708516 3_1:-535781 None:intergenic
GGGCCATTACAAATTGAGCG+GGG 0.720112 3_1:+535257 Msa0342620:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGTAATAATAATTAATGA+CGG + chr3_1:533812-533831 Msa0342620:intron 10.0%
!! GAGTAAATAACTTTATATTT+CGG + chr3_1:535558-535577 Msa0342620:three_prime_UTR 15.0%
!! AAAGTATAACGATGAAAAAA+AGG - chr3_1:532321-532340 None:intergenic 20.0%
!!! ATATGTTTTGGTTATTTTAG+TGG + chr3_1:532885-532904 Msa0342620:intron 20.0%
!!! ATTAATATATGCTTTGAAGA+TGG - chr3_1:533665-533684 None:intergenic 20.0%
!! AATAAAGAACAATAAAGCAA+AGG - chr3_1:533738-533757 None:intergenic 20.0%
!!! TTTTTCAATTATTGAGTCAA+AGG - chr3_1:533786-533805 None:intergenic 20.0%
!! GATTTATGATAGTTAATCTT+TGG + chr3_1:534592-534611 Msa0342620:intron 20.0%
!! AATTTACTATCATCAGTTAT+TGG + chr3_1:535616-535635 Msa0342620:three_prime_UTR 20.0%
!! TTGTAATTATTGTAAACCTA+TGG - chr3_1:535803-535822 None:intergenic 20.0%
!!! TATCTAAGAACACTATTTTA+TGG + chr3_1:535838-535857 Msa0342620:three_prime_UTR 20.0%
!!! CATAAAATTTTCAAATTCAG+TGG - chr3_1:535888-535907 None:intergenic 20.0%
!!! CACTGAATTTGAAAATTTTA+TGG + chr3_1:535886-535905 Msa0342620:three_prime_UTR 20.0%
! TTGACAAAAACATGGAAAAA+CGG + chr3_1:533066-533085 Msa0342620:intron 25.0%
! TCTCAGTTCAACAAAAATAA+GGG - chr3_1:533128-533147 None:intergenic 25.0%
! ATCTCAGTTCAACAAAAATA+AGG - chr3_1:533129-533148 None:intergenic 25.0%
! TTGTTATAGATACTAGGAAT+TGG - chr3_1:533502-533521 None:intergenic 25.0%
! AGCATATATTAATGCATTGA+AGG + chr3_1:533672-533691 Msa0342620:CDS 25.0%
!! TATGATGCTAACTTAGATTT+TGG - chr3_1:534010-534029 None:intergenic 25.0%
!! CAATAGTTTTCTATTCTTTC+CGG - chr3_1:534043-534062 None:intergenic 25.0%
!!! TAAGTGTGTGTTTGATTTTA+CGG + chr3_1:534855-534874 Msa0342620:intron 25.0%
! ATAGCATACTCAGATTTATA+GGG - chr3_1:535035-535054 None:intergenic 25.0%
! AATAGCATACTCAGATTTAT+AGG - chr3_1:535036-535055 None:intergenic 25.0%
!!! ATTAGACTTTAACTTGTGAA+AGG - chr3_1:535054-535073 None:intergenic 25.0%
!!! TATATGTTTTTTTTTACCCC+AGG + chr3_1:535185-535204 Msa0342620:intron 25.0%
!!! ATATGTTTTTTTTTACCCCA+GGG + chr3_1:535186-535205 Msa0342620:intron 25.0%
! AAAATAAATTTGTGACTGCA+AGG - chr3_1:535498-535517 None:intergenic 25.0%
! TTCAATTCGACATCAATTTA+TGG + chr3_1:535589-535608 Msa0342620:three_prime_UTR 25.0%
! CCATACAACTTTATAATAGA+AGG - chr3_1:535667-535686 None:intergenic 25.0%
! CCTTCTATTATAAAGTTGTA+TGG + chr3_1:535664-535683 Msa0342620:three_prime_UTR 25.0%
! TCATCTATTCCTTTATTACA+CGG + chr3_1:535687-535706 Msa0342620:three_prime_UTR 25.0%
TGCTTTCAAAACATTTGTGT+TGG - chr3_1:532348-532367 None:intergenic 30.0%
AGAAAATATCCTTCATGGAA+AGG - chr3_1:532400-532419 None:intergenic 30.0%
!! GTACTTTCAGTTTCTAGTTA+TGG + chr3_1:532456-532475 Msa0342620:exon 30.0%
! GTTCTGATATGTTTGGAATT+CGG + chr3_1:532566-532585 Msa0342620:CDS 30.0%
! GGTTTGTGCTTTTGTTAATT+TGG + chr3_1:532673-532692 Msa0342620:intron 30.0%
!!! TCCAAACCAAGTTTTAGATA+AGG + chr3_1:532697-532716 Msa0342620:intron 30.0%
!!! CCAAACCAAGTTTTAGATAA+GGG + chr3_1:532698-532717 Msa0342620:intron 30.0%
!! ATCCTTTTTGGCATATGTTT+TGG + chr3_1:532873-532892 Msa0342620:intron 30.0%
AACCAAAACATATGCCAAAA+AGG - chr3_1:532878-532897 None:intergenic 30.0%
CTATTGTTGATCACATTGAT+AGG + chr3_1:532914-532933 Msa0342620:intron 30.0%
TTTGAGCAGTTTATAAAGAC+TGG - chr3_1:532954-532973 None:intergenic 30.0%
TAAACTGCTCAAAACTCTAA+TGG + chr3_1:532961-532980 Msa0342620:intron 30.0%
AAAACTCTAATGGCAATAGA+CGG + chr3_1:532971-532990 Msa0342620:intron 30.0%
AAGTCACTATCTTAGTTGTA+AGG - chr3_1:533033-533052 None:intergenic 30.0%
ATCGTTGGAAATTTCAATGA+TGG - chr3_1:533217-533236 None:intergenic 30.0%
! CATATGTTTTGCAAACTCTA+TGG - chr3_1:533284-533303 None:intergenic 30.0%
TTTAACACCTACTGCAAAAA+AGG + chr3_1:533351-533370 Msa0342620:intron 30.0%
TGAACCTTATTATCGTTAGT+TGG + chr3_1:533400-533419 Msa0342620:intron 30.0%
ATGACCAACTAACGATAATA+AGG - chr3_1:533407-533426 None:intergenic 30.0%
TTATTATCGTTAGTTGGTCA+TGG + chr3_1:533406-533425 Msa0342620:intron 30.0%
TATTATCGTTAGTTGGTCAT+GGG + chr3_1:533407-533426 Msa0342620:intron 30.0%
!! TAGGAAATTTAGCTTTGTCT+CGG - chr3_1:533464-533483 None:intergenic 30.0%
GACAAAGCTAAATTTCCTAA+AGG + chr3_1:533465-533484 Msa0342620:CDS 30.0%
AGCACATTGTTATAGATACT+AGG - chr3_1:533508-533527 None:intergenic 30.0%
GAGCAAATACAGAATCATAT+TGG - chr3_1:533579-533598 None:intergenic 30.0%
TATGATTCTGTATTTGCTCT+TGG + chr3_1:533580-533599 Msa0342620:CDS 30.0%
TCTATGATAAACTCATGGAA+GGG + chr3_1:533614-533633 Msa0342620:CDS 30.0%
! TTTTGCTTAGTACTATCTGA+AGG + chr3_1:534081-534100 Msa0342620:intron 30.0%
! AGAACCAACAATTTTAGACA+AGG + chr3_1:534358-534377 Msa0342620:CDS 30.0%
ATCACTTCAAACTGCTTTAT+TGG - chr3_1:534475-534494 None:intergenic 30.0%
! AGCAGTTTGAAGTGATTAAA+TGG + chr3_1:534479-534498 Msa0342620:intron 30.0%
TTACCCTTGAATTTGTGAAT+TGG + chr3_1:534965-534984 Msa0342620:intron 30.0%
AGTCCAATTCACAAATTCAA+GGG - chr3_1:534971-534990 None:intergenic 30.0%
TAGTCCAATTCACAAATTCA+AGG - chr3_1:534972-534991 None:intergenic 30.0%
ACTCAGATTTATAGAGTAGA+TGG - chr3_1:535079-535098 None:intergenic 30.0%
GATTTACAATTACAGCTTGA+TGG + chr3_1:535135-535154 Msa0342620:intron 30.0%
AGAAGAAGAAAAGAGAAGAA+AGG + chr3_1:535209-535228 Msa0342620:CDS 30.0%
GAAGAAGAAAAGAGAAGAAA+GGG + chr3_1:535210-535229 Msa0342620:CDS 30.0%
AAGGATAAGAAATCTTCACT+TGG - chr3_1:535326-535345 None:intergenic 30.0%
ATGATTTCTCATACTGTACT+TGG + chr3_1:535392-535411 Msa0342620:three_prime_UTR 30.0%
! AAGGAGAAAAATGAAAGTGT+TGG - chr3_1:535648-535667 None:intergenic 30.0%
TGATCTTAATATGCACATTG+TGG - chr3_1:535743-535762 None:intergenic 30.0%
AATATCCTTCATGGAAAGGA+AGG - chr3_1:532396-532415 None:intergenic 35.0%
GACTCAGAAAATATCCTTCA+TGG - chr3_1:532405-532424 None:intergenic 35.0%
ACATATCAGAACTTGAAGCA+AGG - chr3_1:532558-532577 None:intergenic 35.0%
! GCTTCAAGTTCTGATATGTT+TGG + chr3_1:532559-532578 Msa0342620:CDS 35.0%
! TGGCAATTCTGCTTCTAAAA+TGG + chr3_1:532624-532643 Msa0342620:CDS 35.0%
! CCCTTATCTAAAACTTGGTT+TGG - chr3_1:532701-532720 None:intergenic 35.0%
!!! AACCAAGTTTTAGATAAGGG+AGG + chr3_1:532701-532720 Msa0342620:intron 35.0%
AGTTAGTTGCATGCATGATT+AGG + chr3_1:532809-532828 Msa0342620:intron 35.0%
! TCTTATGCACCGTAATCTTT+TGG + chr3_1:532848-532867 Msa0342620:intron 35.0%
! CTTATGCACCGTAATCTTTT+GGG + chr3_1:532849-532868 Msa0342620:intron 35.0%
! TTATGCACCGTAATCTTTTG+GGG + chr3_1:532850-532869 Msa0342620:intron 35.0%
AAAGGATCCCCAAAAGATTA+CGG - chr3_1:532860-532879 None:intergenic 35.0%
!! AATCTTTTGGGGATCCTTTT+TGG + chr3_1:532861-532880 Msa0342620:intron 35.0%
TTGTTGATCACATTGATAGG+TGG + chr3_1:532917-532936 Msa0342620:intron 35.0%
TCTTAGTTGTAAGGACAAGA+AGG - chr3_1:533024-533043 None:intergenic 35.0%
!!! AACTCTATGGTGGACTATTT+TGG - chr3_1:533271-533290 None:intergenic 35.0%
! ATGTTTTGCAAACTCTATGG+TGG - chr3_1:533281-533300 None:intergenic 35.0%
!!! TAGTCTTCCTTTTTTGCAGT+AGG - chr3_1:533361-533380 None:intergenic 35.0%
TTGGTCGTTTATATGCCTTT+AGG - chr3_1:533483-533502 None:intergenic 35.0%
TATCTATAACAATGTGCTGC+AGG + chr3_1:533510-533529 Msa0342620:CDS 35.0%
CACTGTCTATGATAAACTCA+TGG + chr3_1:533609-533628 Msa0342620:CDS 35.0%
GTCTATGATAAACTCATGGA+AGG + chr3_1:533613-533632 Msa0342620:CDS 35.0%
TCATGAAACCTGTATTGTTC+TGG - chr3_1:533703-533722 None:intergenic 35.0%
!! AGATTTTGGCAAACAAACTC+TGG - chr3_1:533996-534015 None:intergenic 35.0%
AGCATCATATTATTCCCAAC+CGG + chr3_1:534021-534040 Msa0342620:intron 35.0%
! GTTTTCTATTCTTTCCGGTT+GGG - chr3_1:534038-534057 None:intergenic 35.0%
! AGTTTTCTATTCTTTCCGGT+TGG - chr3_1:534039-534058 None:intergenic 35.0%
ATGCAAAGAAGTTGGAAGAT+TGG + chr3_1:534168-534187 Msa0342620:CDS 35.0%
TGCAAAGAAGTTGGAAGATT+GGG + chr3_1:534169-534188 Msa0342620:CDS 35.0%
!! AGAAGTTGAAGGGGTTTTAA+AGG + chr3_1:534241-534260 Msa0342620:CDS 35.0%
AAGGATATTGCAAAAAGAGC+AGG + chr3_1:534260-534279 Msa0342620:CDS 35.0%
TATAGTCGTTTCTTTGCAGT+AGG + chr3_1:534302-534321 Msa0342620:CDS 35.0%
! GCTACCTTGTCTAAAATTGT+TGG - chr3_1:534365-534384 None:intergenic 35.0%
CATGATGCCTTGAATGAATT+GGG - chr3_1:534387-534406 None:intergenic 35.0%
! GCTTTATTGGAACTTCTTAG+AGG - chr3_1:534462-534481 None:intergenic 35.0%
TTGTAGGAGGAAAACATATC+AGG - chr3_1:534511-534530 None:intergenic 35.0%
TGCAAAGGGAATTTATTGAC+AGG + chr3_1:534723-534742 Msa0342620:CDS 35.0%
ACTCAGATTTATAGGGTAGA+TGG - chr3_1:535028-535047 None:intergenic 35.0%
!! CAACTCAGTGGATTAAGAAA+AGG - chr3_1:535355-535374 None:intergenic 35.0%
! CTTTTCTTAATCCACTGAGT+TGG + chr3_1:535353-535372 Msa0342620:three_prime_UTR 35.0%
ACTGTACTTGGTTTACATTG+TGG + chr3_1:535404-535423 Msa0342620:three_prime_UTR 35.0%
ACATGCAAATTGTGTGAGAA+GGG - chr3_1:535461-535480 None:intergenic 35.0%
TACATGCAAATTGTGTGAGA+AGG - chr3_1:535462-535481 None:intergenic 35.0%
CTAAAAACAAGCAAGCCTAA+AGG + chr3_1:535525-535544 Msa0342620:three_prime_UTR 35.0%
TACTCAGAATGTATGCCTTT+AGG - chr3_1:535543-535562 None:intergenic 35.0%
TACATAAGGCCGTGTAATAA+AGG - chr3_1:535699-535718 None:intergenic 35.0%
GAATGAAGACCTGATACATA+AGG - chr3_1:535713-535732 None:intergenic 35.0%
TTAATATGCACATTGTGGCA+TGG - chr3_1:535738-535757 None:intergenic 35.0%
TATGGCAATAACTCACACTT+GGG - chr3_1:535785-535804 None:intergenic 35.0%
! TTTATGGCTTGTGAGTTCAA+TGG + chr3_1:535854-535873 Msa0342620:three_prime_UTR 35.0%
GGAAGGACAAATTTCAGAGA+TGG - chr3_1:532379-532398 None:intergenic 40.0%
TTTGTCCTTCCTTTCCATGA+AGG + chr3_1:532388-532407 Msa0342620:five_prime_UTR 40.0%
CAACTCTAACACCAACACAA+TGG - chr3_1:532606-532625 None:intergenic 40.0%
!! CATTGTGTTGGTGTTAGAGT+TGG + chr3_1:532604-532623 Msa0342620:CDS 40.0%
! CACCTCCCTTATCTAAAACT+TGG - chr3_1:532706-532725 None:intergenic 40.0%
CATTGATAGGTGGTTCAAGA+TGG + chr3_1:532927-532946 Msa0342620:intron 40.0%
GATAGTGACTTGATCAGTGT+CGG + chr3_1:533042-533061 Msa0342620:intron 40.0%
!! GTGTCGGTTTGACAAAAACA+TGG + chr3_1:533058-533077 Msa0342620:intron 40.0%
AAGTCATTGTCTGAGTGACA+AGG + chr3_1:533154-533173 Msa0342620:intron 40.0%
GACTGGTACTTGAAAATCGT+TGG - chr3_1:533232-533251 None:intergenic 40.0%
!!! CTATGGTGGACTATTTTGGT+AGG - chr3_1:533267-533286 None:intergenic 40.0%
ATATGCATGAGTGTACGAGA+TGG + chr3_1:533299-533318 Msa0342620:intron 40.0%
AGGAAGATCCAGAACAATAC+AGG + chr3_1:533692-533711 Msa0342620:CDS 40.0%
AACAAACTCTGGATTGTGTG+CGG - chr3_1:533985-534004 None:intergenic 40.0%
CTTTGCATCTACTCTGTAGA+GGG - chr3_1:534156-534175 None:intergenic 40.0%
TCTTTGCATCTACTCTGTAG+AGG - chr3_1:534157-534176 None:intergenic 40.0%
CAGAGTAGATGCAAAGAAGT+TGG + chr3_1:534160-534179 Msa0342620:intron 40.0%
! GTTGAGTTTTCATCCAGAGA+AGG + chr3_1:534218-534237 Msa0342620:CDS 40.0%
TGCAAAAAGAGCAGGAGAAA+AGG + chr3_1:534268-534287 Msa0342620:CDS 40.0%
GCAAAAAGAGCAGGAGAAAA+GGG + chr3_1:534269-534288 Msa0342620:CDS 40.0%
TTGCATTTGCCAACTCAAGA+AGG - chr3_1:534337-534356 None:intergenic 40.0%
AAGGTAGCCCAATTCATTCA+AGG + chr3_1:534377-534396 Msa0342620:intron 40.0%
GCATGATGCCTTGAATGAAT+TGG - chr3_1:534388-534407 None:intergenic 40.0%
! TTCATTCAAGGCATCATGCA+TGG + chr3_1:534389-534408 Msa0342620:intron 40.0%
TTGCTACTGAGAGCAATTGT+AGG - chr3_1:534527-534546 None:intergenic 40.0%
GCATCGTTATGAATGTTCGT+AGG + chr3_1:534570-534589 Msa0342620:intron 40.0%
! GTCAACATAACAGCTTTGTG+CGG + chr3_1:534616-534635 Msa0342620:intron 40.0%
!! TCGACAAAAGAAGCGTTGAT+CGG + chr3_1:534648-534667 Msa0342620:CDS 40.0%
TTCAAGCTAAAGAGCTGCAA+AGG + chr3_1:534708-534727 Msa0342620:CDS 40.0%
TCAAGCTAAAGAGCTGCAAA+GGG + chr3_1:534709-534728 Msa0342620:CDS 40.0%
! TCTCTTTTCTTCTTCTCCCT+GGG - chr3_1:535205-535224 None:intergenic 40.0%
! TTCTCTTTTCTTCTTCTCCC+TGG - chr3_1:535206-535225 None:intergenic 40.0%
GAAGAAAAGAGAAGAAAGGG+TGG + chr3_1:535213-535232 Msa0342620:CDS 40.0%
AGCCACAGAAGGCTAATAAT+GGG + chr3_1:535236-535255 Msa0342620:CDS 40.0%
TTTCCCCGCTCAATTTGTAA+TGG - chr3_1:535263-535282 None:intergenic 40.0%
! GATTAAGAAAAGGCGTGTCA+AGG - chr3_1:535345-535364 None:intergenic 40.0%
TTCTTGCTTATCCAACTCAG+TGG - chr3_1:535367-535386 None:intergenic 40.0%
TGAGAAGGGTGAACAAATTG+TGG - chr3_1:535447-535466 None:intergenic 40.0%
! ATTACACGGCCTTATGTATC+AGG + chr3_1:535701-535720 Msa0342620:three_prime_UTR 40.0%
ATGGCAATAACTCACACTTG+GGG - chr3_1:535784-535803 None:intergenic 40.0%
CTATGGCAATAACTCACACT+TGG - chr3_1:535786-535805 None:intergenic 40.0%
CAAGTGTGAGTTATTGCCAT+AGG + chr3_1:535784-535803 Msa0342620:three_prime_UTR 40.0%
GATTCCTCGTACCATTGTGT+TGG + chr3_1:532592-532611 Msa0342620:CDS 45.0%
AACACCAACACAATGGTACG+AGG - chr3_1:532599-532618 None:intergenic 45.0%
CAATGCATGTCTTCTGTCAC+AGG + chr3_1:532652-532671 Msa0342620:CDS 45.0%
TTGTAAGGACAAGAAGGACC+GGG - chr3_1:533018-533037 None:intergenic 45.0%
GTTGTAAGGACAAGAAGGAC+CGG - chr3_1:533019-533038 None:intergenic 45.0%
TCATTGTCTGAGTGACAAGG+TGG + chr3_1:533157-533176 Msa0342620:intron 45.0%
! TTTTGGTAGGTGGTCTACAG+TGG - chr3_1:533254-533273 None:intergenic 45.0%
!!! TGGTGGACTATTTTGGTAGG+TGG - chr3_1:533264-533283 None:intergenic 45.0%
!! GGAAGGGTATTCTAGTGAAG+AGG + chr3_1:533630-533649 Msa0342620:CDS 45.0%
ACTATGTCCAGCAGAGGTTT+GGG + chr3_1:533855-533874 Msa0342620:intron 45.0%
GGCTGATTGCATGGAATCAA+GGG - chr3_1:533897-533916 None:intergenic 45.0%
TGGCTGATTGCATGGAATCA+AGG - chr3_1:533898-533917 None:intergenic 45.0%
TTGATCAGATGGCCTAGAAG+TGG - chr3_1:533918-533937 None:intergenic 45.0%
TTGTTGCGGTCTTGATCAGA+TGG - chr3_1:533929-533948 None:intergenic 45.0%
GAAGTTGGAAGATTGGGCTA+AGG + chr3_1:534175-534194 Msa0342620:CDS 45.0%
GGCTCAAAACTCAACTTCAC+TGG + chr3_1:534196-534215 Msa0342620:CDS 45.0%
TCCAGAGAAGGAGAAGTTGA+AGG + chr3_1:534230-534249 Msa0342620:CDS 45.0%
CCAGAGAAGGAGAAGTTGAA+GGG + chr3_1:534231-534250 Msa0342620:CDS 45.0%
CAGAGAAGGAGAAGTTGAAG+GGG + chr3_1:534232-534251 Msa0342620:CDS 45.0%
CCAACTCAAGAAGGCGAAAA+AGG - chr3_1:534328-534347 None:intergenic 45.0%
!! CCTTTTTCGCCTTCTTGAGT+TGG + chr3_1:534325-534344 Msa0342620:CDS 45.0%
CTACTGAGAGCAATTGTAGG+AGG - chr3_1:534524-534543 None:intergenic 45.0%
!! CGACAAAAGAAGCGTTGATC+GGG + chr3_1:534649-534668 Msa0342620:CDS 45.0%
!! CTCTTTAGCTTGAACCAGCT+TGG - chr3_1:534702-534721 None:intergenic 45.0%
CAGAGAGGAGAACAACTGAA+GGG - chr3_1:534770-534789 None:intergenic 45.0%
ACAGAGAGGAGAACAACTGA+AGG - chr3_1:534771-534790 None:intergenic 45.0%
TGTTCTCCTCTCTGTCATCA+TGG + chr3_1:534776-534795 Msa0342620:intron 45.0%
GAAAAGCCATGATGACAGAG+AGG - chr3_1:534785-534804 None:intergenic 45.0%
! CTCTTTTCTTCTTCTCCCTG+GGG - chr3_1:535204-535223 None:intergenic 45.0%
GAGCCACAGAAGGCTAATAA+TGG + chr3_1:535235-535254 Msa0342620:CDS 45.0%
GCCACAGAAGGCTAATAATG+GGG + chr3_1:535237-535256 Msa0342620:CDS 45.0%
TGGGGCCATTACAAATTGAG+CGG + chr3_1:535255-535274 Msa0342620:exon 45.0%
TGCATGAGTGTACGAGATGG+TGG + chr3_1:533302-533321 Msa0342620:intron 50.0%
GCATGAGTGTACGAGATGGT+GGG + chr3_1:533303-533322 Msa0342620:intron 50.0%
! AGCTTTGTCTCGGAAACGCT+GGG - chr3_1:533454-533473 None:intergenic 50.0%
!! TAGCTTTGTCTCGGAAACGC+TGG - chr3_1:533455-533474 None:intergenic 50.0%
CTGCTGGACATAGTCTTCAG+TGG - chr3_1:533849-533868 None:intergenic 50.0%
CTGAAGACTATGTCCAGCAG+AGG + chr3_1:533849-533868 Msa0342620:intron 50.0%
GACTATGTCCAGCAGAGGTT+TGG + chr3_1:533854-533873 Msa0342620:intron 50.0%
CCTAGAAGTGGCTGATTGCA+TGG - chr3_1:533906-533925 None:intergenic 50.0%
CCATGCAATCAGCCACTTCT+AGG + chr3_1:533903-533922 Msa0342620:intron 50.0%
CAACCACATCAGGGTTGTTG+CGG - chr3_1:533943-533962 None:intergenic 50.0%
TGCAGCAGTCAACCACATCA+GGG - chr3_1:533952-533971 None:intergenic 50.0%
ATGCAGCAGTCAACCACATC+AGG - chr3_1:533953-533972 None:intergenic 50.0%
CCCTTCAACTTCTCCTTCTC+TGG - chr3_1:534234-534253 None:intergenic 50.0%
!! AAGAAGCGTTGATCGGGACT+TGG + chr3_1:534655-534674 Msa0342620:CDS 50.0%
!! TCGTATGCTGCTTTCCAAGC+TGG + chr3_1:534685-534704 Msa0342620:CDS 50.0%
!! GCCCCATTATTAGCCTTCTG+TGG - chr3_1:535241-535260 None:intergenic 50.0%
GGGGCCATTACAAATTGAGC+GGG + chr3_1:535256-535275 Msa0342620:exon 50.0%
GGGCCATTACAAATTGAGCG+GGG + chr3_1:535257-535276 Msa0342620:exon 50.0%
CCGGGAGCTTCTACTTCAGA+GGG - chr3_1:533000-533019 None:intergenic 55.0%
!! CCCTCTGAAGTAGAAGCTCC+CGG + chr3_1:532997-533016 Msa0342620:intron 55.0%
ACCGGGAGCTTCTACTTCAG+AGG - chr3_1:533001-533020 None:intergenic 55.0%
GTAGGTGGTCTACAGTGGAC+TGG - chr3_1:533249-533268 None:intergenic 55.0%
CACACAACCCAAACCTCTGC+TGG - chr3_1:533865-533884 None:intergenic 55.0%
AGACCGCAACAACCCTGATG+TGG + chr3_1:533937-533956 Msa0342620:intron 55.0%
AGAAAGGGTGGAGCCACAGA+AGG + chr3_1:535225-535244 Msa0342620:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 532300 535918 532300 ID=Msa0342620;Name=Msa0342620
chr3_1 mRNA 532300 535918 532300 ID=Msa0342620-mRNA-1;Parent=Msa0342620;Name=Msa0342620-mRNA-1;_AED=0.02;_eAED=0.02;_QI=175|1|1|1|1|1|5|645|288
chr3_1 exon 532300 532673 532300 ID=Msa0342620-mRNA-1:exon:43;Parent=Msa0342620-mRNA-1
chr3_1 exon 533446 533713 533446 ID=Msa0342620-mRNA-1:exon:44;Parent=Msa0342620-mRNA-1
chr3_1 exon 534163 534379 534163 ID=Msa0342620-mRNA-1:exon:45;Parent=Msa0342620-mRNA-1
chr3_1 exon 534629 534744 534629 ID=Msa0342620-mRNA-1:exon:46;Parent=Msa0342620-mRNA-1
chr3_1 exon 535207 535918 535207 ID=Msa0342620-mRNA-1:exon:47;Parent=Msa0342620-mRNA-1
chr3_1 five_prime_UTR 532300 532474 532300 ID=Msa0342620-mRNA-1:five_prime_utr;Parent=Msa0342620-mRNA-1
chr3_1 CDS 532475 532673 532475 ID=Msa0342620-mRNA-1:cds;Parent=Msa0342620-mRNA-1
chr3_1 CDS 533446 533713 533446 ID=Msa0342620-mRNA-1:cds;Parent=Msa0342620-mRNA-1
chr3_1 CDS 534163 534379 534163 ID=Msa0342620-mRNA-1:cds;Parent=Msa0342620-mRNA-1
chr3_1 CDS 534629 534744 534629 ID=Msa0342620-mRNA-1:cds;Parent=Msa0342620-mRNA-1
chr3_1 CDS 535207 535273 535207 ID=Msa0342620-mRNA-1:cds;Parent=Msa0342620-mRNA-1
chr3_1 three_prime_UTR 535274 535918 535274 ID=Msa0342620-mRNA-1:three_prime_utr;Parent=Msa0342620-mRNA-1
Gene Sequence

>Msa0342620

ATGGCTGCACTAACTTCTTTGTCATTCTCAGCAACTACTCAATGCTCACTGAGAAAATTCACTTTTTCTTCTACTCGTTTCCTTGCTTCAAGTTCTGATATGTTTGGAATTCGGACAGATTCCTCGTACCATTGTGTTGGTGTTAGAGTTGGCAATTCTGCTTCTAAAATGGTTATTCAATGCATGTCTTCTGTCACAGATGTTCCCAGCGTTTCCGAGACAAAGCTAAATTTCCTAAAGGCATATAAACGACCAATTCCTAGTATCTATAACAATGTGCTGCAGGAGCTCATTGTTCAACATCATTTAATGAGATACAAGACATCATACCAATATGATTCTGTATTTGCTCTTGGTTTTGTCACTGTCTATGATAAACTCATGGAAGGGTATTCTAGTGAAGAGGAGCGAGATACCATCTTCAAAGCATATATTAATGCATTGAAGGAAGATCCAGAACAATACAGAGTAGATGCAAAGAAGTTGGAAGATTGGGCTAAGGCTCAAAACTCAACTTCACTGGTTGAGTTTTCATCCAGAGAAGGAGAAGTTGAAGGGGTTTTAAAGGATATTGCAAAAAGAGCAGGAGAAAAGGGCGAATTCAGTTATAGTCGTTTCTTTGCAGTAGGCCTTTTTCGCCTTCTTGAGTTGGCAAATGCAACAGAACCAACAATTTTAGACAAGCTTTGTGCGGCTTTGAACATCGACAAAAGAAGCGTTGATCGGGACTTGGATGTGTATCGTATGCTGCTTTCCAAGCTGGTTCAAGCTAAAGAGCTGCAAAGGGAATTTATTGACAGGGAGAAGAAGAAAAGAGAAGAAAGGGTGGAGCCACAGAAGGCTAATAATGGGGCCATTACAAATTGA

Protein sequence

>Msa0342620

MAALTSLSFSATTQCSLRKFTFSSTRFLASSSDMFGIRTDSSYHCVGVRVGNSASKMVIQCMSSVTDVPSVSETKLNFLKAYKRPIPSIYNNVLQELIVQHHLMRYKTSYQYDSVFALGFVTVYDKLMEGYSSEEERDTIFKAYINALKEDPEQYRVDAKKLEDWAKAQNSTSLVEFSSREGEVEGVLKDIAKRAGEKGEFSYSRFFAVGLFRLLELANATEPTILDKLCAALNIDKRSVDRDLDVYRMLLSKLVQAKELQREFIDREKKKREERVEPQKANNGAITN*