AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0092730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0092730 MtrunA17_Chr1g0209801 95.331 257 12 0 1 257 1 257 5.96e-179 492
Msa0092730 MtrunA17_Chr1g0193661 32.639 144 88 5 78 218 74 211 8.38e-12 63.9
Msa0092730 MtrunA17_Chr4g0066351 32.639 144 88 5 78 218 74 211 9.77e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0092730 AT3G25920.1 70.464 237 58 2 17 243 24 258 2.52e-111 322

Find 80 sgRNAs with CRISPR-Local

Find 426 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAATTGGTTTCTTCTTT+AGG 0.207614 1_2:+75450204 Msa0092730:three_prime_UTR
TCGGTTTCGGTTGGACAATT+TGG 0.209684 1_2:+75445306 Msa0092730:CDS
CAAGGAGCGAGTTGTGGTTT+TGG 0.247810 1_2:+75445388 Msa0092730:CDS
ATCAATCATCATCAACAAAT+TGG 0.250968 1_2:+75450191 Msa0092730:three_prime_UTR
TCCTGCAATTCCTCTAAGTT+TGG 0.258498 1_2:-75445494 None:intergenic
CGCTCTTCACTCTGTCAAAA+TGG 0.262848 1_2:-75444997 None:intergenic
CTTCTCTTATTCCTGTTTCC+TGG 0.269459 1_2:+75445057 Msa0092730:CDS
CGGTTTCGGTTGGACAATTT+GGG 0.284648 1_2:+75445307 Msa0092730:CDS
AGCAGCTGCTTCTCGCTTCT+TGG 0.291577 1_2:-75450121 None:intergenic
TTGCATATTTAAACAGAATC+TGG 0.313222 1_2:-75450150 None:intergenic
CGACGATTGCCCAAACTTAG+AGG 0.316218 1_2:+75445484 Msa0092730:CDS
AGATTGATGTGGACATATTT+CGG 0.336463 1_2:-75446522 None:intergenic
CTCTCTCGCTTCTCCATTCA+AGG 0.354654 1_2:+75445085 Msa0092730:CDS
CTCTTTCTTGAACCTGGTTG+TGG 0.358662 1_2:-75445331 None:intergenic
CATCATTGAACAGTGAAATA+AGG 0.365832 1_2:-75450544 None:intergenic
TTAAGACATGGACATAGATA+TGG 0.367880 1_2:-75445205 None:intergenic
GAGAAAACTTCAATACAAAA+AGG 0.369347 1_2:-75450267 None:intergenic
TGTTCCATCACTGTGATTCC+TGG 0.369456 1_2:+75450036 Msa0092730:CDS
CCCAAACTTAGAGGAATTGC+AGG 0.376415 1_2:+75445493 Msa0092730:CDS
TGATTCCTGGCCGTAAGAAA+TGG 0.380224 1_2:+75450049 Msa0092730:CDS
AGGTGCATACCGAAAGTTCT+TGG 0.394725 1_2:+75450514 Msa0092730:three_prime_UTR
CCTGCAATTCCTCTAAGTTT+GGG 0.397805 1_2:-75445493 None:intergenic
CTCCTTCGCTGATGTGGAAA+AGG 0.406202 1_2:-75449995 None:intergenic
GGAAATAGAAATACCTTGAA+TGG 0.411477 1_2:-75445098 None:intergenic
CTCTGTCAAAATGGAACAAA+CGG 0.412322 1_2:-75444988 None:intergenic
TTTGCTCTCTTTCTTGAACC+TGG 0.419614 1_2:-75445337 None:intergenic
TAATAAGGCTGCTTCTGCTT+CGG 0.436199 1_2:+75445261 Msa0092730:CDS
GGCACCGAACCAAGAACTTT+CGG 0.440027 1_2:-75450523 None:intergenic
AAGAAAGAGAGCAAAGAGAA+AGG 0.443452 1_2:+75445345 Msa0092730:CDS
AGAGAGGGTAACCAGGAAAC+AGG 0.445145 1_2:-75445068 None:intergenic
ATGGCTTAACCCATTTCTTA+CGG 0.452810 1_2:-75450059 None:intergenic
AACCAGCAGGTGAAAATGTT+CGG 0.456863 1_2:+75445287 Msa0092730:CDS
CGATTTGTGCTGGAAACCTT+TGG 0.460118 1_2:+75450398 Msa0092730:three_prime_UTR
AGAAGGGGAAGAGGTGTCTC+TGG 0.461261 1_2:+75446572 Msa0092730:CDS
CAGGTGAAAATGTTCGGTTT+CGG 0.473561 1_2:+75445293 Msa0092730:CDS
GTTTGCTTGTCGATTTGTGC+TGG 0.476311 1_2:+75450388 Msa0092730:three_prime_UTR
GACAATTTGGGTCCACAACC+AGG 0.479320 1_2:+75445319 Msa0092730:CDS
AGAAAGAGAGCAAAGAGAAA+GGG 0.484644 1_2:+75445346 Msa0092730:CDS
TGAAAATGTTCGGTTTCGGT+TGG 0.487169 1_2:+75445297 Msa0092730:CDS
AGAAGCGAGAGAGGGTAACC+AGG 0.489358 1_2:-75445075 None:intergenic
AAGTTTCTCCTTCGCTGATG+TGG 0.489671 1_2:-75450001 None:intergenic
TTAACCCATTTCTTACGGCC+AGG 0.492636 1_2:-75450054 None:intergenic
GAAATATGTCCACATCAATC+TGG 0.495258 1_2:+75446524 Msa0092730:CDS
GGAACGGAAACTTCTATTGA+AGG 0.496485 1_2:+75446635 Msa0092730:CDS
AGTTTCCGTTCCCTTCCTGA+TGG 0.497026 1_2:-75446624 None:intergenic
ACATAATAAGGTATGCATGC+TGG 0.501018 1_2:+75446495 Msa0092730:intron
TCTGCTTCGGTGAAACCAGC+AGG 0.507750 1_2:+75445274 Msa0092730:CDS
AGAGCAAAGAGAAAGGGAAG+AGG 0.509714 1_2:+75445352 Msa0092730:CDS
GATTCCTGGCCGTAAGAAAT+GGG 0.511756 1_2:+75450050 Msa0092730:CDS
CATACCGAAAGTTCTTGGTT+CGG 0.517088 1_2:+75450519 Msa0092730:three_prime_UTR
GTTATGTAGTTTCTTGTACA+AGG 0.522578 1_2:+75450494 Msa0092730:three_prime_UTR
GAAGATGCTGGATTTCAAGA+AGG 0.525528 1_2:+75446555 Msa0092730:CDS
AAGGAGAAACTTGAGTCTGC+TGG 0.526406 1_2:+75450012 Msa0092730:CDS
CTGGTAGACATAGAAGATGC+TGG 0.527862 1_2:+75446543 Msa0092730:CDS
AAACGTGTGATTAACCCATC+AGG 0.531753 1_2:+75446609 Msa0092730:CDS
AAGATGCTGGATTTCAAGAA+GGG 0.537870 1_2:+75446556 Msa0092730:CDS
GTTTCCGTTCCCTTCCTGAT+GGG 0.539207 1_2:-75446623 None:intergenic
AGAGGTATTGCCGCAGGACA+AGG 0.557884 1_2:+75445370 Msa0092730:CDS
TTGGGCAATCGTCGATAAAG+TGG 0.564517 1_2:-75445475 None:intergenic
AAGAAGTTGACAATAAAAGC+TGG 0.573815 1_2:+75449970 Msa0092730:CDS
GCAGGACAAGGAGCGAGTTG+TGG 0.577933 1_2:+75445382 Msa0092730:CDS
TGGATTTCAAGAAGGGGAAG+AGG 0.578835 1_2:+75446563 Msa0092730:CDS
GTAGGGAAATGTGAAAACCT+TGG 0.584114 1_2:+75445174 Msa0092730:intron
AAGGGAAGAGGTATTGCCGC+AGG 0.588347 1_2:+75445364 Msa0092730:CDS
TTGTGCTGGAAACCTTTGGT+AGG 0.590784 1_2:+75450402 Msa0092730:three_prime_UTR
CTTGAATGGAGAAGCGAGAG+AGG 0.590843 1_2:-75445084 None:intergenic
GGTGTCTCTGGAGACACTGA+CGG 0.598433 1_2:+75446584 Msa0092730:CDS
ATTAAACACACTCCTACCAA+AGG 0.609468 1_2:-75450414 None:intergenic
GTGTGATTAACCCATCAGGA+AGG 0.611754 1_2:+75446613 Msa0092730:CDS
TTGAATGGAGAAGCGAGAGA+GGG 0.622388 1_2:-75445083 None:intergenic
CTTCTTGGCGAAGTATTCGT+CGG 0.627986 1_2:-75450106 None:intergenic
ACGGCCAGGAATCACAGTGA+TGG 0.630385 1_2:-75450040 None:intergenic
TGTGATTAACCCATCAGGAA+GGG 0.634878 1_2:+75446614 Msa0092730:CDS
TCTGGACCTGGTATCATGAG+AGG 0.634957 1_2:+75445433 Msa0092730:CDS
TCAAAACCTCTCATGATACC+AGG 0.646172 1_2:-75445439 None:intergenic
CTATGTCTACCAGATTGATG+TGG 0.650882 1_2:-75446533 None:intergenic
TTAACCCATCAGGAAGGGAA+CGG 0.658603 1_2:+75446619 Msa0092730:CDS
AGATGCTGGATTTCAAGAAG+GGG 0.662527 1_2:+75446557 Msa0092730:CDS
ACAACTCGCTCCTTGTCCTG+CGG 0.686055 1_2:-75445380 None:intergenic
AAACTTAGAGGAATTGCAGG+AGG 0.696930 1_2:+75445496 Msa0092730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATTAAATGTACATTTA+GGG - chr1_2:75447387-75447406 None:intergenic 10.0%
!!! TTTTAATTAAATGTACATTT+AGG - chr1_2:75447388-75447407 None:intergenic 10.0%
!!! TACACAATATATTTTTAAAA+AGG + chr1_2:75449885-75449904 Msa0092730:intron 10.0%
!! AATTTCAACAATAAAACAAT+AGG - chr1_2:75445553-75445572 None:intergenic 15.0%
!! GAATTATATTAGGATAATTT+AGG + chr1_2:75445938-75445957 Msa0092730:intron 15.0%
!!! AAAAGCAATTATTTTATGAA+AGG + chr1_2:75446363-75446382 Msa0092730:intron 15.0%
!!! GATTATTTTAGATTAACTAT+AGG - chr1_2:75447180-75447199 None:intergenic 15.0%
!!! TATTAATCTTTTTCACTTTA+AGG + chr1_2:75448789-75448808 Msa0092730:intron 15.0%
!!! TCTAATATCATTTAGAATTT+TGG + chr1_2:75449254-75449273 Msa0092730:intron 15.0%
!!! TTCTTTTCAAGATATTTTAA+TGG - chr1_2:75450349-75450368 None:intergenic 15.0%
!!! GTGTGTTTAATTTTATAATA+AGG + chr1_2:75450426-75450445 Msa0092730:three_prime_UTR 15.0%
!! TATGAGAAAATGAAATGAAA+TGG - chr1_2:75445122-75445141 None:intergenic 20.0%
!!! ACCATTGATTTTATATTTGT+AGG + chr1_2:75445156-75445175 Msa0092730:intron 20.0%
!!! CCATTGATTTTATATTTGTA+GGG + chr1_2:75445157-75445176 Msa0092730:intron 20.0%
!!! GAAAATAATGTTTTCAACTA+TGG + chr1_2:75445590-75445609 Msa0092730:intron 20.0%
!! AACAAAACATCGTAAAAAAA+GGG - chr1_2:75445866-75445885 None:intergenic 20.0%
!! TAACAAAACATCGTAAAAAA+AGG - chr1_2:75445867-75445886 None:intergenic 20.0%
!!! GGATTTTGTTGAATTATATT+AGG + chr1_2:75445928-75445947 Msa0092730:intron 20.0%
!!! CTTTGAAAATCTACATATTA+GGG - chr1_2:75446152-75446171 None:intergenic 20.0%
!!! TCTTTGAAAATCTACATATT+AGG - chr1_2:75446153-75446172 None:intergenic 20.0%
!!! TTCACTTTTAAAAACAAATG+AGG + chr1_2:75446765-75446784 Msa0092730:intron 20.0%
!! TTTCATATTATGCCTTTAAT+CGG + chr1_2:75446879-75446898 Msa0092730:intron 20.0%
!! AAAGAGTTAAAGTTAGTTAA+TGG + chr1_2:75447037-75447056 Msa0092730:intron 20.0%
!!! TATTTTCAACAAGAGAAATA+AGG + chr1_2:75447216-75447235 Msa0092730:intron 20.0%
!! AAATATCAATTTCTGTCTAT+TGG + chr1_2:75447405-75447424 Msa0092730:intron 20.0%
!! TACCAGATAGAATATTTAAA+AGG + chr1_2:75447825-75447844 Msa0092730:intron 20.0%
!! ACCAGATAGAATATTTAAAA+GGG + chr1_2:75447826-75447845 Msa0092730:intron 20.0%
!! GAGAATTCAAGAATATAAAA+TGG + chr1_2:75447973-75447992 Msa0092730:intron 20.0%
!!! ATTTCTAAAGTGATATTTAG+CGG + chr1_2:75449526-75449545 Msa0092730:intron 20.0%
!!! TTATCAAAAAAGGTGTAATT+TGG + chr1_2:75450464-75450483 Msa0092730:three_prime_UTR 20.0%
! CCCTACAAATATAAAATCAA+TGG - chr1_2:75445160-75445179 None:intergenic 25.0%
! TTATTAACAACAAAAACACG+AGG - chr1_2:75445247-75445266 None:intergenic 25.0%
!!! TCGTGTTTTTGTTGTTAATA+AGG + chr1_2:75445246-75445265 Msa0092730:CDS 25.0%
!! AATAATGTTTTCAACTATGG+TGG + chr1_2:75445593-75445612 Msa0092730:intron 25.0%
! TTGACATTGTAATTCAATGA+TGG + chr1_2:75445626-75445645 Msa0092730:intron 25.0%
! TTAGTCTATATACTACCAAA+TGG + chr1_2:75445728-75445747 Msa0092730:intron 25.0%
! TAGTCTATATACTACCAAAT+GGG + chr1_2:75445729-75445748 Msa0092730:intron 25.0%
! TCATTAGTAGGAAAAAACAA+TGG + chr1_2:75446005-75446024 Msa0092730:intron 25.0%
! CATTTCAAGATGTCAATAAA+GGG - chr1_2:75446190-75446209 None:intergenic 25.0%
!!! TTTTGAAATGAAATCATGGA+AGG - chr1_2:75446347-75446366 None:intergenic 25.0%
!!! TTGCTTTTGAAATGAAATCA+TGG - chr1_2:75446351-75446370 None:intergenic 25.0%
!!! CTTTTAAAAACAAATGAGGA+TGG + chr1_2:75446769-75446788 Msa0092730:intron 25.0%
! AGAAGTCTTTCTTGATATAT+GGG - chr1_2:75446811-75446830 None:intergenic 25.0%
!! TAAGTTCAAACGCAATATTT+TGG + chr1_2:75446951-75446970 Msa0092730:intron 25.0%
!! GAATTTGAAACTGTAAAAGT+TGG + chr1_2:75446992-75447011 Msa0092730:intron 25.0%
! TGTAAAAGTTGGAATATAAG+AGG + chr1_2:75447003-75447022 Msa0092730:intron 25.0%
!! TAAAGTTAGTTAATGGATGT+TGG + chr1_2:75447044-75447063 Msa0092730:intron 25.0%
!! AAAGTTAGTTAATGGATGTT+GGG + chr1_2:75447045-75447064 Msa0092730:intron 25.0%
! CTCTTGTTGAAAATATGTTT+AGG - chr1_2:75447211-75447230 None:intergenic 25.0%
! TGTTGTCTATAAATAAGAAG+AGG + chr1_2:75447241-75447260 Msa0092730:intron 25.0%
! GTTGTCTATAAATAAGAAGA+GGG + chr1_2:75447242-75447261 Msa0092730:intron 25.0%
!!! TCTTGTCATTTTAGTATAGT+CGG + chr1_2:75447288-75447307 Msa0092730:intron 25.0%
! GTATATCATTGAAGATTATG+TGG + chr1_2:75447455-75447474 Msa0092730:intron 25.0%
!!! GAGGTATTTTCATATGAAAT+AGG + chr1_2:75447573-75447592 Msa0092730:intron 25.0%
!! TTTTCATATGAAATAGGTGT+TGG + chr1_2:75447579-75447598 Msa0092730:intron 25.0%
! TTTCATATGAAATAGGTGTT+GGG + chr1_2:75447580-75447599 Msa0092730:intron 25.0%
! TGATGTGTCATAATGTTATT+AGG + chr1_2:75447685-75447704 Msa0092730:intron 25.0%
!! ACCCTTTTAAATATTCTATC+TGG - chr1_2:75447830-75447849 None:intergenic 25.0%
!! TTAAAAGGGTTTTTCTTGAA+AGG + chr1_2:75447840-75447859 Msa0092730:intron 25.0%
! AATAAAAAAGATTACCGAAC+AGG + chr1_2:75448078-75448097 Msa0092730:intron 25.0%
! ATAAAAAAGATTACCGAACA+GGG + chr1_2:75448079-75448098 Msa0092730:intron 25.0%
! AAAAGGAAAAGATGTCTTTA+TGG + chr1_2:75448153-75448172 Msa0092730:intron 25.0%
! AAAGGAAAAGATGTCTTTAT+GGG + chr1_2:75448154-75448173 Msa0092730:intron 25.0%
! TGTCAGATTCTAAACATATT+TGG - chr1_2:75448385-75448404 None:intergenic 25.0%
!!! TCTTTTTCACTTTAAGGATA+AGG + chr1_2:75448795-75448814 Msa0092730:intron 25.0%
!!! TCTTGTATTTTTAATAGAGC+TGG + chr1_2:75448953-75448972 Msa0092730:intron 25.0%
!!! CTTGTATTTTTAATAGAGCT+GGG + chr1_2:75448954-75448973 Msa0092730:intron 25.0%
!!! AATTCTATTTCTAAGTTGGT+TGG - chr1_2:75449008-75449027 None:intergenic 25.0%
!! TTCGTAGATATGAAAAGTAT+TGG - chr1_2:75449494-75449513 None:intergenic 25.0%
!! AATATTTTCCTGAGTTTATG+AGG - chr1_2:75449731-75449750 None:intergenic 25.0%
! CAATTTCAAACAACTTATAC+AGG + chr1_2:75449768-75449787 Msa0092730:intron 25.0%
! TTGCATATTTAAACAGAATC+TGG - chr1_2:75450153-75450172 None:intergenic 25.0%
! ATCAATCATCATCAACAAAT+TGG + chr1_2:75450191-75450210 Msa0092730:three_prime_UTR 25.0%
!! AACAAATTGGTTTCTTCTTT+AGG + chr1_2:75450204-75450223 Msa0092730:three_prime_UTR 25.0%
! GAGAAAACTTCAATACAAAA+AGG - chr1_2:75450270-75450289 None:intergenic 25.0%
!! TTTTGTATTGAAGTTTTCTC+TGG + chr1_2:75450270-75450289 Msa0092730:three_prime_UTR 25.0%
GGAAATAGAAATACCTTGAA+TGG - chr1_2:75445101-75445120 None:intergenic 30.0%
TTAAGACATGGACATAGATA+TGG - chr1_2:75445208-75445227 None:intergenic 30.0%
!!! ATTCGCTGAATTTTAAGACA+TGG - chr1_2:75445220-75445239 None:intergenic 30.0%
! AATATAATTTGCCCGCTAAT+AGG + chr1_2:75445837-75445856 Msa0092730:intron 30.0%
! TAATTTAGGATCCTACTGTT+AGG + chr1_2:75445952-75445971 Msa0092730:intron 30.0%
! AATTTAGGATCCTACTGTTA+GGG + chr1_2:75445953-75445972 Msa0092730:intron 30.0%
ATGACTTTCAAATGTGATGT+AGG - chr1_2:75446086-75446105 None:intergenic 30.0%
GATATATACAACAGCATATC+CGG - chr1_2:75446130-75446149 None:intergenic 30.0%
CCATTTCAAGATGTCAATAA+AGG - chr1_2:75446191-75446210 None:intergenic 30.0%
CCTTTATTGACATCTTGAAA+TGG + chr1_2:75446188-75446207 Msa0092730:intron 30.0%
TTATTGTCTGAAGAGAATCA+TGG + chr1_2:75446214-75446233 Msa0092730:intron 30.0%
!! AAATTTAGGTATTGGAAGCT+TGG - chr1_2:75446254-75446273 None:intergenic 30.0%
AGGAAGAGAAATTTAGGTAT+TGG - chr1_2:75446262-75446281 None:intergenic 30.0%
AATGAAATCATGGAAGGATA+TGG - chr1_2:75446341-75446360 None:intergenic 30.0%
TTTCTTTCATTCTTTGTCGT+AGG + chr1_2:75446388-75446407 Msa0092730:intron 30.0%
AGATTGATGTGGACATATTT+CGG - chr1_2:75446525-75446544 None:intergenic 30.0%
!! ACACATTACTTGTTGGTTTA+TGG + chr1_2:75446659-75446678 Msa0092730:intron 30.0%
ACATGTAAGACAACAACTAA+GGG - chr1_2:75446700-75446719 None:intergenic 30.0%
AACATGTAAGACAACAACTA+AGG - chr1_2:75446701-75446720 None:intergenic 30.0%
! ATTGTTTTCATGATGTCTAG+AGG + chr1_2:75446731-75446750 Msa0092730:intron 30.0%
GAAGTCTTTCTTGATATATG+GGG - chr1_2:75446810-75446829 None:intergenic 30.0%
CAGAAGTCTTTCTTGATATA+TGG - chr1_2:75446812-75446831 None:intergenic 30.0%
ACTTTATTCACGATAGACAA+GGG - chr1_2:75446844-75446863 None:intergenic 30.0%
AACTTTATTCACGATAGACA+AGG - chr1_2:75446845-75446864 None:intergenic 30.0%
AACCAAAATTCTCCGATTAA+AGG - chr1_2:75446894-75446913 None:intergenic 30.0%
ACTTTAACTCTTTCAACCAA+CGG - chr1_2:75447030-75447049 None:intergenic 30.0%
TTTCTTTGAGCCTTACAAAA+CGG - chr1_2:75447116-75447135 None:intergenic 30.0%
TATAAATAAGAAGAGGGCTT+AGG + chr1_2:75447248-75447267 Msa0092730:intron 30.0%
!!! CTTGTCATTTTAGTATAGTC+GGG + chr1_2:75447289-75447308 Msa0092730:intron 30.0%
!!! TTGTCATTTTAGTATAGTCG+GGG + chr1_2:75447290-75447309 Msa0092730:intron 30.0%
TTAGGGAAAATTTCCTTGTA+TGG - chr1_2:75447370-75447389 None:intergenic 30.0%
ATTTCTGTCTATTGGTATCA+AGG + chr1_2:75447413-75447432 Msa0092730:intron 30.0%
! AATAAGAATAAAGGCACACA+TGG + chr1_2:75447482-75447501 Msa0092730:intron 30.0%
! TAACCCATTTGGTATTTTGT+TGG + chr1_2:75447731-75447750 Msa0092730:intron 30.0%
! AACCCATTTGGTATTTTGTT+GGG + chr1_2:75447732-75447751 Msa0092730:intron 30.0%
TACCCAACAAAATACCAAAT+GGG - chr1_2:75447737-75447756 None:intergenic 30.0%
ATACCCAACAAAATACCAAA+TGG - chr1_2:75447738-75447757 None:intergenic 30.0%
AAATGAGTGAAGAAAAGAGT+CGG + chr1_2:75447928-75447947 Msa0092730:intron 30.0%
AAATGGAGAAGTAAGAAGAA+AGG + chr1_2:75447990-75448009 Msa0092730:intron 30.0%
AAGAAGAAAGGTGAAAGAAA+TGG + chr1_2:75448002-75448021 Msa0092730:intron 30.0%
TAAAAAAGATTACCGAACAG+GGG + chr1_2:75448080-75448099 Msa0092730:intron 30.0%
CAGAGTTTCACAATTTGTAA+TGG - chr1_2:75448277-75448296 None:intergenic 30.0%
!! TAAACATGAAGATGGATTGT+TGG + chr1_2:75448484-75448503 Msa0092730:intron 30.0%
TGTTGGATTGTATTTCAAAG+AGG + chr1_2:75448501-75448520 Msa0092730:intron 30.0%
AAGACTTCCTTTATAAGAAG+AGG + chr1_2:75448569-75448588 Msa0092730:intron 30.0%
GTATCTACCTCTTCTTATAA+AGG - chr1_2:75448579-75448598 None:intergenic 30.0%
TGCTCTACATGAATAATACT+TGG - chr1_2:75448611-75448630 None:intergenic 30.0%
AACTACTACATCAAGCTAAA+AGG + chr1_2:75448708-75448727 Msa0092730:intron 30.0%
ACTACTACATCAAGCTAAAA+GGG + chr1_2:75448709-75448728 Msa0092730:intron 30.0%
TGCTGTCTATATATAAGAAG+AGG + chr1_2:75448916-75448935 Msa0092730:intron 30.0%
TATATATAAGAAGAGGCTGA+AGG + chr1_2:75448923-75448942 Msa0092730:intron 30.0%
!! GAGCAATTCTATTTCTAAGT+TGG - chr1_2:75449012-75449031 None:intergenic 30.0%
CAAACATGCATAAACTTCTA+GGG + chr1_2:75449157-75449176 Msa0092730:intron 30.0%
! TCTAGCATCATGAATTTTGT+TGG + chr1_2:75449592-75449611 Msa0092730:intron 30.0%
AGAAGAGCTCTTTCAAATAA+TGG - chr1_2:75449703-75449722 None:intergenic 30.0%
ATTATTTGAAAGAGCTCTTC+TGG + chr1_2:75449702-75449721 Msa0092730:intron 30.0%
ACTTCTAATTAGTCATGCAT+TGG + chr1_2:75449812-75449831 Msa0092730:intron 30.0%
CTTCTAATTAGTCATGCATT+GGG + chr1_2:75449813-75449832 Msa0092730:intron 30.0%
!! AATAATAGTTTGTTGTGCTC+TGG + chr1_2:75449917-75449936 Msa0092730:intron 30.0%
AAGAAGTTGACAATAAAAGC+TGG + chr1_2:75449970-75449989 Msa0092730:CDS 30.0%
!!! CCTTTTTTGATAAAGACACA+AGG - chr1_2:75450457-75450476 None:intergenic 30.0%
CCTTGTGTCTTTATCAAAAA+AGG + chr1_2:75450454-75450473 Msa0092730:three_prime_UTR 30.0%
GTTATGTAGTTTCTTGTACA+AGG + chr1_2:75450494-75450513 Msa0092730:three_prime_UTR 30.0%
CATCATTGAACAGTGAAATA+AGG - chr1_2:75450547-75450566 None:intergenic 30.0%
CTCTGTCAAAATGGAACAAA+CGG - chr1_2:75444991-75445010 None:intergenic 35.0%
!! TAGATATGGTTTTGCTACCA+AGG - chr1_2:75445194-75445213 None:intergenic 35.0%
AAGAAAGAGAGCAAAGAGAA+AGG + chr1_2:75445345-75445364 Msa0092730:CDS 35.0%
AGAAAGAGAGCAAAGAGAAA+GGG + chr1_2:75445346-75445365 Msa0092730:CDS 35.0%
ATCTCTTCTTACACAACACT+TGG + chr1_2:75445520-75445539 Msa0092730:intron 35.0%
TCTCTTCTTACACAACACTT+GGG + chr1_2:75445521-75445540 Msa0092730:intron 35.0%
AAAAAAGGGCAACCTATTAG+CGG - chr1_2:75445852-75445871 None:intergenic 35.0%
! TGTGAAGCATTATGATGCTA+CGG - chr1_2:75445896-75445915 None:intergenic 35.0%
TAGCATCATAATGCTTCACA+TGG + chr1_2:75445896-75445915 Msa0092730:intron 35.0%
TGCTTCACATGGAGTTTAAA+TGG + chr1_2:75445907-75445926 Msa0092730:intron 35.0%
CTACATGTAGCATCATTAGT+AGG + chr1_2:75445993-75446012 Msa0092730:intron 35.0%
TAGATGAGAATTGTGATTCC+TGG + chr1_2:75446029-75446048 Msa0092730:intron 35.0%
TACATAATCAATCTGCAACC+AGG - chr1_2:75446050-75446069 None:intergenic 35.0%
TCATGAAGTATGCCTATTAC+AGG + chr1_2:75446102-75446121 Msa0092730:intron 35.0%
TGAAGAGAATCATGGCATTA+TGG + chr1_2:75446222-75446241 Msa0092730:intron 35.0%
GAACTGAGGAAGAGAAATTT+AGG - chr1_2:75446268-75446287 None:intergenic 35.0%
GTCAAGCATAATAAGAACTG+AGG - chr1_2:75446282-75446301 None:intergenic 35.0%
GAAGGATATGGAAGAATAAG+GGG - chr1_2:75446329-75446348 None:intergenic 35.0%
GGAAGGATATGGAAGAATAA+GGG - chr1_2:75446330-75446349 None:intergenic 35.0%
TGGAAGGATATGGAAGAATA+AGG - chr1_2:75446331-75446350 None:intergenic 35.0%
GTATATGCATAAATCTCGCT+TGG + chr1_2:75446430-75446449 Msa0092730:intron 35.0%
ACATAATAAGGTATGCATGC+TGG + chr1_2:75446495-75446514 Msa0092730:intron 35.0%
GAAATATGTCCACATCAATC+TGG + chr1_2:75446524-75446543 Msa0092730:CDS 35.0%
AAGATGCTGGATTTCAAGAA+GGG + chr1_2:75446556-75446575 Msa0092730:CDS 35.0%
! TGAAGGTACACATTACTTGT+TGG + chr1_2:75446652-75446671 Msa0092730:intron 35.0%
! TTCTTGATATATGGGGTACT+AGG - chr1_2:75446803-75446822 None:intergenic 35.0%
CAAGAAAGACTTCTGATATG+AGG + chr1_2:75446817-75446836 Msa0092730:intron 35.0%
! TGCCTTTAATCGGAGAATTT+TGG + chr1_2:75446889-75446908 Msa0092730:intron 35.0%
!! GTTCAAACGCAATATTTTGG+TGG + chr1_2:75446954-75446973 Msa0092730:intron 35.0%
! ATAATCGAGTCCGTTTTGTA+AGG + chr1_2:75447103-75447122 Msa0092730:intron 35.0%
!!! TGTCATTTTAGTATAGTCGG+GGG + chr1_2:75447291-75447310 Msa0092730:intron 35.0%
GGAAAACTACAGAACTTCAA+AGG - chr1_2:75447349-75447368 None:intergenic 35.0%
! GTTCTGTAGTTTTCCATACA+AGG + chr1_2:75447354-75447373 Msa0092730:intron 35.0%
TGTGGCGTGAATAAGAATAA+AGG + chr1_2:75447473-75447492 Msa0092730:intron 35.0%
GTGAGGAAGTAATTTCAGTT+GGG + chr1_2:75447517-75447536 Msa0092730:intron 35.0%
TGAGGAAGTAATTTCAGTTG+GGG + chr1_2:75447518-75447537 Msa0092730:intron 35.0%
CAAGGATCAATTTGACATAC+AGG + chr1_2:75447784-75447803 Msa0092730:intron 35.0%
ATCAATTTGACATACAGGTC+AGG + chr1_2:75447789-75447808 Msa0092730:intron 35.0%
! AAGGGTTTTTCTTGAAAGGA+CGG + chr1_2:75447844-75447863 Msa0092730:intron 35.0%
ACTATTGGAGGAGATGAATT+TGG + chr1_2:75447895-75447914 Msa0092730:intron 35.0%
GAAATGGAGTGAAATGACTA+TGG + chr1_2:75448018-75448037 Msa0092730:intron 35.0%
! CTTTTCATTCCACTTCTGTT+AGG - chr1_2:75448138-75448157 None:intergenic 35.0%
CTAACAGAAGTGGAATGAAA+AGG + chr1_2:75448136-75448155 Msa0092730:intron 35.0%
TGTCACATCATTGTTGAATG+CGG + chr1_2:75448212-75448231 Msa0092730:intron 35.0%
!! TTTGTACAAGAGCACACTTT+TGG - chr1_2:75448244-75448263 None:intergenic 35.0%
! AAAAGTGTGCTCTTGTACAA+AGG + chr1_2:75448243-75448262 Msa0092730:intron 35.0%
AATCTGACAACTTCAACCTT+TGG + chr1_2:75448396-75448415 Msa0092730:intron 35.0%
ATCTGACAACTTCAACCTTT+GGG + chr1_2:75448397-75448416 Msa0092730:intron 35.0%
TTCATGTTTAGCAACAGCAT+AGG - chr1_2:75448474-75448493 None:intergenic 35.0%
ATTGATGAGAGGCAGATTAA+TGG + chr1_2:75448544-75448563 Msa0092730:intron 35.0%
TTGATACACCTGTTAGTTGA+AGG + chr1_2:75448838-75448857 Msa0092730:intron 35.0%
TGAGTTAAGCTTGTAGTTTG+TGG + chr1_2:75448865-75448884 Msa0092730:intron 35.0%
! GAGTTAAGCTTGTAGTTTGT+GGG + chr1_2:75448866-75448885 Msa0092730:intron 35.0%
!! TTTCTAAGTTGGTTGGAAGA+GGG - chr1_2:75449001-75449020 None:intergenic 35.0%
!! ATTTCTAAGTTGGTTGGAAG+AGG - chr1_2:75449002-75449021 None:intergenic 35.0%
! TTTTCCTTCACAAGGCTTAT+AGG - chr1_2:75449090-75449109 None:intergenic 35.0%
!!! GCATGTTATTTTCCTTCACA+AGG - chr1_2:75449098-75449117 None:intergenic 35.0%
GTGAAGGAAAATAACATGCT+CGG + chr1_2:75449099-75449118 Msa0092730:intron 35.0%
GCAAACATGCATAAACTTCT+AGG + chr1_2:75449156-75449175 Msa0092730:intron 35.0%
GCATTCTTTACCTTACAAAC+TGG - chr1_2:75449299-75449318 None:intergenic 35.0%
AAAGAAACTGTAGCATGTTC+TGG + chr1_2:75449552-75449571 Msa0092730:intron 35.0%
ACATATAATACGCTACCAAG+TGG + chr1_2:75449644-75449663 Msa0092730:intron 35.0%
CATATAATACGCTACCAAGT+GGG + chr1_2:75449645-75449664 Msa0092730:intron 35.0%
ATGGCTTAACCCATTTCTTA+CGG - chr1_2:75450062-75450081 None:intergenic 35.0%
ATTAAACACACTCCTACCAA+AGG - chr1_2:75450417-75450436 None:intergenic 35.0%
!! CATTTTGACAGAGTGAAGAG+CGG + chr1_2:75444998-75445017 Msa0092730:five_prime_UTR 40.0%
CTTCTCTTATTCCTGTTTCC+TGG + chr1_2:75445057-75445076 Msa0092730:CDS 40.0%
GTAGGGAAATGTGAAAACCT+TGG + chr1_2:75445174-75445193 Msa0092730:intron 40.0%
TAATAAGGCTGCTTCTGCTT+CGG + chr1_2:75445261-75445280 Msa0092730:CDS 40.0%
AACCAGCAGGTGAAAATGTT+CGG + chr1_2:75445287-75445306 Msa0092730:CDS 40.0%
CAGGTGAAAATGTTCGGTTT+CGG + chr1_2:75445293-75445312 Msa0092730:CDS 40.0%
TGAAAATGTTCGGTTTCGGT+TGG + chr1_2:75445297-75445316 Msa0092730:CDS 40.0%
TTTGCTCTCTTTCTTGAACC+TGG - chr1_2:75445340-75445359 None:intergenic 40.0%
!!! AGTTGTGGTTTTGGAATGAG+AGG + chr1_2:75445397-75445416 Msa0092730:CDS 40.0%
AGAGGTCAAAAATCTCGATC+TGG + chr1_2:75445415-75445434 Msa0092730:CDS 40.0%
TCAAAACCTCTCATGATACC+AGG - chr1_2:75445442-75445461 None:intergenic 40.0%
!! GGTATCATGAGAGGTTTTGA+AGG + chr1_2:75445442-75445461 Msa0092730:CDS 40.0%
!!! ATCATGAGAGGTTTTGAAGG+TGG + chr1_2:75445445-75445464 Msa0092730:CDS 40.0%
CCTGCAATTCCTCTAAGTTT+GGG - chr1_2:75445496-75445515 None:intergenic 40.0%
TCCTGCAATTCCTCTAAGTT+TGG - chr1_2:75445497-75445516 None:intergenic 40.0%
AAACTTAGAGGAATTGCAGG+AGG + chr1_2:75445496-75445515 Msa0092730:CDS 40.0%
AAAAAGGGCAACCTATTAGC+GGG - chr1_2:75445851-75445870 None:intergenic 40.0%
CTATGTCTACCAGATTGATG+TGG - chr1_2:75446536-75446555 None:intergenic 40.0%
GAAGATGCTGGATTTCAAGA+AGG + chr1_2:75446555-75446574 Msa0092730:CDS 40.0%
AGATGCTGGATTTCAAGAAG+GGG + chr1_2:75446557-75446576 Msa0092730:CDS 40.0%
AAACGTGTGATTAACCCATC+AGG + chr1_2:75446609-75446628 Msa0092730:CDS 40.0%
TGTGATTAACCCATCAGGAA+GGG + chr1_2:75446614-75446633 Msa0092730:CDS 40.0%
GGAACGGAAACTTCTATTGA+AGG + chr1_2:75446635-75446654 Msa0092730:CDS 40.0%
TTGGAATATAAGAGGTCCGT+TGG + chr1_2:75447011-75447030 Msa0092730:intron 40.0%
GATTATGCGGTTGAGAAACA+CGG - chr1_2:75447089-75447108 None:intergenic 40.0%
! ACAAAACGGACTCGATTATG+CGG - chr1_2:75447102-75447121 None:intergenic 40.0%
ATATACTCCCAACTCCTTGA+TGG - chr1_2:75447441-75447460 None:intergenic 40.0%
GGTGAGGAAGTAATTTCAGT+TGG + chr1_2:75447516-75447535 Msa0092730:intron 40.0%
GTTGGATCAACAAGTTTGAG+AGG + chr1_2:75447554-75447573 Msa0092730:intron 40.0%
!! CATATGAAATAGGTGTTGGG+AGG + chr1_2:75447583-75447602 Msa0092730:intron 40.0%
ATAAGTCATCTGTGTAGCCA+TGG + chr1_2:75447615-75447634 Msa0092730:intron 40.0%
AAACAAAGCTTGTCCTTCCA+TGG - chr1_2:75447635-75447654 None:intergenic 40.0%
TTATGACACATCACCCAAGT+CGG - chr1_2:75447678-75447697 None:intergenic 40.0%
!! AATGGGTTACGAATCATGGA+TGG - chr1_2:75447720-75447739 None:intergenic 40.0%
TCCATGATTCGTAACCCATT+TGG + chr1_2:75447720-75447739 Msa0092730:intron 40.0%
!! ACCAAATGGGTTACGAATCA+TGG - chr1_2:75447724-75447743 None:intergenic 40.0%
TTTGTTGGGTATGAAGCAAG+AGG + chr1_2:75447746-75447765 Msa0092730:intron 40.0%
TTGTTGGGTATGAAGCAAGA+GGG + chr1_2:75447747-75447766 Msa0092730:intron 40.0%
AAATGACTATGGCATGGAAG+TGG + chr1_2:75448029-75448048 Msa0092730:intron 40.0%
! TTTTTATTCTCCTCTGCCCT+AGG - chr1_2:75448066-75448085 None:intergenic 40.0%
GGAAAAGATGTCTTTATGGG+TGG + chr1_2:75448157-75448176 Msa0092730:intron 40.0%
GAACCAATGAAGAACAAAGC+TGG + chr1_2:75448179-75448198 Msa0092730:intron 40.0%
!! CTTCCAGCTTTGTTCTTCAT+TGG - chr1_2:75448185-75448204 None:intergenic 40.0%
CATTAGGTCTTCATGCATGT+AGG - chr1_2:75448301-75448320 None:intergenic 40.0%
ATACGAGATTCGTTGTTCGA+TGG - chr1_2:75448328-75448347 None:intergenic 40.0%
AGTAGCCAAGGTGATATCAA+AGG + chr1_2:75448348-75448367 Msa0092730:intron 40.0%
CTTTGCCTTTGATATCACCT+TGG - chr1_2:75448356-75448375 None:intergenic 40.0%
TGAGCTTGAAGATGAAGTTG+TGG + chr1_2:75448426-75448445 Msa0092730:intron 40.0%
GAGCTTGAAGATGAAGTTGT+GGG + chr1_2:75448427-75448446 Msa0092730:intron 40.0%
AGCTTGAAGATGAAGTTGTG+GGG + chr1_2:75448428-75448447 Msa0092730:intron 40.0%
GCTGTTGCTAAACATGAAGA+TGG + chr1_2:75448476-75448495 Msa0092730:intron 40.0%
AGAGCAACACAAAGTTTGAG+AGG + chr1_2:75448625-75448644 Msa0092730:intron 40.0%
AAAGAGTTCTTTGGCATGAC+TGG + chr1_2:75448663-75448682 Msa0092730:intron 40.0%
AAGAGTTCTTTGGCATGACT+GGG + chr1_2:75448664-75448683 Msa0092730:intron 40.0%
AGGATAAGGTGAAACTTGAG+AGG + chr1_2:75448809-75448828 Msa0092730:intron 40.0%
CTCAAACTCCTTCAACTAAC+AGG - chr1_2:75448849-75448868 None:intergenic 40.0%
GTTTCGGCAAAAAACCTTAC+CGG + chr1_2:75449054-75449073 Msa0092730:intron 40.0%
CAAAAAACCTTACCGGAAGA+TGG + chr1_2:75449061-75449080 Msa0092730:intron 40.0%
GAAAATAACATGCTCGGCAA+CGG + chr1_2:75449105-75449124 Msa0092730:intron 40.0%
!! GTTCTGGATCCAGGTTTTTA+GGG - chr1_2:75449203-75449222 None:intergenic 40.0%
!! ACCTTACAAACTGGTCTTGT+CGG - chr1_2:75449290-75449309 None:intergenic 40.0%
AAGAATGCCCAAGCTCTATT+TGG + chr1_2:75449311-75449330 Msa0092730:intron 40.0%
AGAATGCCCAAGCTCTATTT+GGG + chr1_2:75449312-75449331 Msa0092730:intron 40.0%
! AGGACTGAATATTTGGAGTG+AGG - chr1_2:75449352-75449371 None:intergenic 40.0%
CACACTCAGGACTGAATATT+TGG - chr1_2:75449359-75449378 None:intergenic 40.0%
! TCTGGTTTCCTCATAAACTC+AGG + chr1_2:75449720-75449739 Msa0092730:intron 40.0%
!!! GCAAGATTTTTGGCAACTGA+TGG - chr1_2:75450081-75450100 None:intergenic 40.0%
CATACCGAAAGTTCTTGGTT+CGG + chr1_2:75450519-75450538 Msa0092730:three_prime_UTR 40.0%
CGCTCTTCACTCTGTCAAAA+TGG - chr1_2:75445000-75445019 None:intergenic 45.0%
TTGAATGGAGAAGCGAGAGA+GGG - chr1_2:75445086-75445105 None:intergenic 45.0%
! AACCGAACATTTTCACCTGC+TGG - chr1_2:75445292-75445311 None:intergenic 45.0%
TCGGTTTCGGTTGGACAATT+TGG + chr1_2:75445306-75445325 Msa0092730:CDS 45.0%
CGGTTTCGGTTGGACAATTT+GGG + chr1_2:75445307-75445326 Msa0092730:CDS 45.0%
CTCTTTCTTGAACCTGGTTG+TGG - chr1_2:75445334-75445353 None:intergenic 45.0%
AGAGCAAAGAGAAAGGGAAG+AGG + chr1_2:75445352-75445371 Msa0092730:CDS 45.0%
CAAAAATCTCGATCTGGACC+TGG + chr1_2:75445421-75445440 Msa0092730:CDS 45.0%
TTGGGCAATCGTCGATAAAG+TGG - chr1_2:75445478-75445497 None:intergenic 45.0%
CCCAAACTTAGAGGAATTGC+AGG + chr1_2:75445493-75445512 Msa0092730:CDS 45.0%
ATTGCGCAAAAGCTCCCATT+TGG - chr1_2:75445746-75445765 None:intergenic 45.0%
CTTGATCACTCCCTAACAGT+AGG - chr1_2:75445966-75445985 None:intergenic 45.0%
AGTATGCCTATTACAGGAGC+CGG + chr1_2:75446108-75446127 Msa0092730:intron 45.0%
CTGGTAGACATAGAAGATGC+TGG + chr1_2:75446543-75446562 Msa0092730:CDS 45.0%
TGGATTTCAAGAAGGGGAAG+AGG + chr1_2:75446563-75446582 Msa0092730:CDS 45.0%
GTGTGATTAACCCATCAGGA+AGG + chr1_2:75446613-75446632 Msa0092730:CDS 45.0%
TTAACCCATCAGGAAGGGAA+CGG + chr1_2:75446619-75446638 Msa0092730:CDS 45.0%
AAGAGGGCTTAGGTTTGAGA+GGG + chr1_2:75447258-75447277 Msa0092730:intron 45.0%
CTTCTCTACTCCCTATACCA+AGG - chr1_2:75447318-75447337 None:intergenic 45.0%
TTGGTATCAAGGCTCCATCA+AGG + chr1_2:75447424-75447443 Msa0092730:intron 45.0%
! AAAGGCACACATGGATGTCA+TGG + chr1_2:75447491-75447510 Msa0092730:intron 45.0%
AATGCTCCAAAACCCGACTT+GGG + chr1_2:75447662-75447681 Msa0092730:intron 45.0%
TATGACACATCACCCAAGTC+GGG - chr1_2:75447677-75447696 None:intergenic 45.0%
AGATTGAAGCTACCCTTGGA+CGG + chr1_2:75447869-75447888 Msa0092730:intron 45.0%
GAGTGAAGAAAAGAGTCGGT+CGG + chr1_2:75447932-75447951 Msa0092730:intron 45.0%
AAGAAAAGAGTCGGTCGGTT+TGG + chr1_2:75447937-75447956 Msa0092730:intron 45.0%
GGAGTGAAATGACTATGGCA+TGG + chr1_2:75448023-75448042 Msa0092730:intron 45.0%
! GCATGGAAGTGGAAGTTGAT+CGG + chr1_2:75448040-75448059 Msa0092730:intron 45.0%
ACTTCTGTTAGGTTACCAGG+TGG - chr1_2:75448127-75448146 None:intergenic 45.0%
ACCTGGTAACCTAACAGAAG+TGG + chr1_2:75448126-75448145 Msa0092730:intron 45.0%
TCCACTTCTGTTAGGTTACC+AGG - chr1_2:75448130-75448149 None:intergenic 45.0%
CACATCATTGTTGAATGCGG+AGG + chr1_2:75448215-75448234 Msa0092730:intron 45.0%
!! GTACAAGAGCACACTTTTGG+TGG - chr1_2:75448241-75448260 None:intergenic 45.0%
GTGTGCTCTTGTACAAAGGA+TGG + chr1_2:75448247-75448266 Msa0092730:intron 45.0%
!! GTTGTTCGATGGTGGACATT+AGG - chr1_2:75448317-75448336 None:intergenic 45.0%
CGAATCTCGTATAGTAGCCA+AGG + chr1_2:75448336-75448355 Msa0092730:intron 45.0%
TGACAACTTCAACCTTTGGG+TGG + chr1_2:75448400-75448419 Msa0092730:intron 45.0%
CATCAATGCATGAGCCTATG+CGG - chr1_2:75448531-75448550 None:intergenic 45.0%
! TAGGCTCATGCATTGATGAG+AGG + chr1_2:75448533-75448552 Msa0092730:intron 45.0%
GCAACACAAAGTTTGAGAGG+CGG + chr1_2:75448628-75448647 Msa0092730:intron 45.0%
CAACACAAAGTTTGAGAGGC+GGG + chr1_2:75448629-75448648 Msa0092730:intron 45.0%
ACTGGGAGTCAAACTGTCAA+AGG + chr1_2:75448681-75448700 Msa0092730:intron 45.0%
CTGGGAGTCAAACTGTCAAA+GGG + chr1_2:75448682-75448701 Msa0092730:intron 45.0%
GTCTTGCTGCAGCTAGAATA+AGG - chr1_2:75448759-75448778 None:intergenic 45.0%
! TAGCTGCAGCAAGACTGTTT+TGG + chr1_2:75448764-75448783 Msa0092730:intron 45.0%
CCTCCTGTATGGTTCAGTTT+CGG + chr1_2:75449038-75449057 Msa0092730:intron 45.0%
TTGCCGAAACTGAACCATAC+AGG - chr1_2:75449044-75449063 None:intergenic 45.0%
GCTTATAGGAAGCCATCTTC+CGG - chr1_2:75449076-75449095 None:intergenic 45.0%
! GCTTCCTATAAGCCTTGTGA+AGG + chr1_2:75449083-75449102 Msa0092730:intron 45.0%
!!! TGGATCCAGGTTTTTAGGGT+TGG - chr1_2:75449199-75449218 None:intergenic 45.0%
!!! GGTTCTGGATCCAGGTTTTT+AGG - chr1_2:75449204-75449223 None:intergenic 45.0%
AAATACGCTGTTACCAGAGC+AGG - chr1_2:75449225-75449244 None:intergenic 45.0%
ACCGACAAGACCAGTTTGTA+AGG + chr1_2:75449286-75449305 Msa0092730:intron 45.0%
AGGCTTCCCAAATAGAGCTT+GGG - chr1_2:75449321-75449340 None:intergenic 45.0%
AAGGCTTCCCAAATAGAGCT+TGG - chr1_2:75449322-75449341 None:intergenic 45.0%
! TTTGGAGTGAGGACAAACGA+AGG - chr1_2:75449341-75449360 None:intergenic 45.0%
TATTCAGTCCTGAGTGTGTG+AGG + chr1_2:75449361-75449380 Msa0092730:intron 45.0%
ATTCAGTCCTGAGTGTGTGA+GGG + chr1_2:75449362-75449381 Msa0092730:intron 45.0%
ATACGCTACCAAGTGGGAAA+AGG + chr1_2:75449651-75449670 Msa0092730:intron 45.0%
! TTCCACGCTTTTCGTCACAA+TGG + chr1_2:75449850-75449869 Msa0092730:intron 45.0%
ATCCATTGTGACGAAAAGCG+TGG - chr1_2:75449855-75449874 None:intergenic 45.0%
!! GTTTGTTGTGCTCTGGTTTC+AGG + chr1_2:75449924-75449943 Msa0092730:intron 45.0%
AAGTTTCTCCTTCGCTGATG+TGG - chr1_2:75450004-75450023 None:intergenic 45.0%
AAGGAGAAACTTGAGTCTGC+TGG + chr1_2:75450012-75450031 Msa0092730:CDS 45.0%
TGTTCCATCACTGTGATTCC+TGG + chr1_2:75450036-75450055 Msa0092730:CDS 45.0%
TGATTCCTGGCCGTAAGAAA+TGG + chr1_2:75450049-75450068 Msa0092730:CDS 45.0%
GATTCCTGGCCGTAAGAAAT+GGG + chr1_2:75450050-75450069 Msa0092730:CDS 45.0%
TTAACCCATTTCTTACGGCC+AGG - chr1_2:75450057-75450076 None:intergenic 45.0%
! CTTCTTGGCGAAGTATTCGT+CGG - chr1_2:75450109-75450128 None:intergenic 45.0%
!! GTTTGCTTGTCGATTTGTGC+TGG + chr1_2:75450388-75450407 Msa0092730:three_prime_UTR 45.0%
CGATTTGTGCTGGAAACCTT+TGG + chr1_2:75450398-75450417 Msa0092730:three_prime_UTR 45.0%
TTGTGCTGGAAACCTTTGGT+AGG + chr1_2:75450402-75450421 Msa0092730:three_prime_UTR 45.0%
AGGTGCATACCGAAAGTTCT+TGG + chr1_2:75450514-75450533 Msa0092730:three_prime_UTR 45.0%
!!! TTTTATAAAAATAAAAGAAA+AGG - chr1_2:75446473-75446492 None:intergenic 5.0%
!!! TTTTATAAAAAAACATAATA+AGG + chr1_2:75446483-75446502 Msa0092730:intron 5.0%
AGAGAGGGTAACCAGGAAAC+AGG - chr1_2:75445071-75445090 None:intergenic 50.0%
CTTGAATGGAGAAGCGAGAG+AGG - chr1_2:75445087-75445106 None:intergenic 50.0%
CTCTCTCGCTTCTCCATTCA+AGG + chr1_2:75445085-75445104 Msa0092730:CDS 50.0%
GACAATTTGGGTCCACAACC+AGG + chr1_2:75445319-75445338 Msa0092730:CDS 50.0%
! CAAGGAGCGAGTTGTGGTTT+TGG + chr1_2:75445388-75445407 Msa0092730:CDS 50.0%
TCTGGACCTGGTATCATGAG+AGG + chr1_2:75445433-75445452 Msa0092730:CDS 50.0%
CGACGATTGCCCAAACTTAG+AGG + chr1_2:75445484-75445503 Msa0092730:CDS 50.0%
GCATATCCGGCTCCTGTAAT+AGG - chr1_2:75446117-75446136 None:intergenic 50.0%
GTTTCCGTTCCCTTCCTGAT+GGG - chr1_2:75446626-75446645 None:intergenic 50.0%
AGTTTCCGTTCCCTTCCTGA+TGG - chr1_2:75446627-75446646 None:intergenic 50.0%
GAAGAGGGCTTAGGTTTGAG+AGG + chr1_2:75447257-75447276 Msa0092730:intron 50.0%
TTAGTATAGTCGGGGGTCCT+TGG + chr1_2:75447298-75447317 Msa0092730:intron 50.0%
TCAAGGCTCCATCAAGGAGT+TGG + chr1_2:75447430-75447449 Msa0092730:intron 50.0%
CAAGGCTCCATCAAGGAGTT+GGG + chr1_2:75447431-75447450 Msa0092730:intron 50.0%
GCACACATGGATGTCATGGA+TGG + chr1_2:75447495-75447514 Msa0092730:intron 50.0%
CATGGATGTCATGGATGGTG+AGG + chr1_2:75447500-75447519 Msa0092730:intron 50.0%
TGGGGAAGATGCATCTGTGT+TGG + chr1_2:75447536-75447555 Msa0092730:intron 50.0%
GTCATCTGTGTAGCCATGGA+AGG + chr1_2:75447619-75447638 Msa0092730:intron 50.0%
CAATGCTCCAAAACCCGACT+TGG + chr1_2:75447661-75447680 Msa0092730:intron 50.0%
! ACATCACCCAAGTCGGGTTT+TGG - chr1_2:75447671-75447690 None:intergenic 50.0%
GGTTACGAATCATGGATGGC+TGG - chr1_2:75447716-75447735 None:intergenic 50.0%
AGGGCTTGTGCATGAATGCA+AGG + chr1_2:75447766-75447785 Msa0092730:intron 50.0%
GGCAAGATTGAAGCTACCCT+TGG + chr1_2:75447865-75447884 Msa0092730:intron 50.0%
GATTGAAGCTACCCTTGGAC+GGG + chr1_2:75447870-75447889 Msa0092730:intron 50.0%
TCCAATAGTGACCCGTCCAA+GGG - chr1_2:75447884-75447903 None:intergenic 50.0%
! AAGTGGAAGTTGATCGGCCT+AGG + chr1_2:75448046-75448065 Msa0092730:intron 50.0%
! AGTGGAAGTTGATCGGCCTA+GGG + chr1_2:75448047-75448066 Msa0092730:intron 50.0%
ATTACCGAACAGGGGACAGT+AGG + chr1_2:75448088-75448107 Msa0092730:intron 50.0%
CAATCCTACTGTCCCCTGTT+CGG - chr1_2:75448095-75448114 None:intergenic 50.0%
CGAGATTCGTTGTTCGATGG+TGG - chr1_2:75448325-75448344 None:intergenic 50.0%
TCAAGCTCAATGCCACCCAA+AGG - chr1_2:75448415-75448434 None:intergenic 50.0%
TTCAAAGAGGCTGACCGCAT+AGG + chr1_2:75448514-75448533 Msa0092730:intron 50.0%
GCAGGCGTCAAAGAGTTCTT+TGG + chr1_2:75448654-75448673 Msa0092730:intron 50.0%
! GCTTGTAGTTTGTGGGAGCT+AGG + chr1_2:75448873-75448892 Msa0092730:intron 50.0%
GGCCAACTGAAGACTCATCA+GGG - chr1_2:75448980-75448999 None:intergenic 50.0%
TGCTCTTTGAGCCTCCTGTA+TGG + chr1_2:75449027-75449046 Msa0092730:intron 50.0%
CCGAAACTGAACCATACAGG+AGG - chr1_2:75449041-75449060 None:intergenic 50.0%
TAGGAAGCCATCTTCCGGTA+AGG - chr1_2:75449071-75449090 None:intergenic 50.0%
!! TCTAGGGTTAGCCTTGACGA+CGG + chr1_2:75449173-75449192 Msa0092730:intron 50.0%
!! CTGGTCTTGTCGGTTCAGTT+AGG - chr1_2:75449280-75449299 None:intergenic 50.0%
TTCAGTCCTGAGTGTGTGAG+GGG + chr1_2:75449363-75449382 Msa0092730:intron 50.0%
CTACCAAGTGGGAAAAGGCA+TGG + chr1_2:75449656-75449675 Msa0092730:intron 50.0%
! TGCCTTTTCCACATCAGCGA+AGG + chr1_2:75449993-75450012 Msa0092730:CDS 50.0%
CTCCTTCGCTGATGTGGAAA+AGG - chr1_2:75449998-75450017 None:intergenic 50.0%
! GTCGGCACGTGCAAGATTTT+TGG - chr1_2:75450091-75450110 None:intergenic 50.0%
! GGCACCGAACCAAGAACTTT+CGG - chr1_2:75450526-75450545 None:intergenic 50.0%
AGAAGCGAGAGAGGGTAACC+AGG - chr1_2:75445078-75445097 None:intergenic 55.0%
TCTGCTTCGGTGAAACCAGC+AGG + chr1_2:75445274-75445293 Msa0092730:CDS 55.0%
!! AAGGGAAGAGGTATTGCCGC+AGG + chr1_2:75445364-75445383 Msa0092730:CDS 55.0%
!! AGAGGTATTGCCGCAGGACA+AGG + chr1_2:75445370-75445389 Msa0092730:CDS 55.0%
ACAACTCGCTCCTTGTCCTG+CGG - chr1_2:75445383-75445402 None:intergenic 55.0%
!! AGAAGGGGAAGAGGTGTCTC+TGG + chr1_2:75446572-75446591 Msa0092730:CDS 55.0%
! GGTGTCTCTGGAGACACTGA+CGG + chr1_2:75446584-75446603 Msa0092730:CDS 55.0%
TAGTCGGGGGTCCTTGGTAT+AGG + chr1_2:75447304-75447323 Msa0092730:intron 55.0%
AGTCGGGGGTCCTTGGTATA+GGG + chr1_2:75447305-75447324 Msa0092730:intron 55.0%
ACCCTTGGACGGGTCACTAT+TGG + chr1_2:75447880-75447899 Msa0092730:intron 55.0%
CTCCAATAGTGACCCGTCCA+AGG - chr1_2:75447885-75447904 None:intergenic 55.0%
CTTGGACGGGTCACTATTGG+AGG + chr1_2:75447883-75447902 Msa0092730:intron 55.0%
CAGGGGACAGTAGGATTGCA+AGG + chr1_2:75448097-75448116 Msa0092730:intron 55.0%
GGATTGCAAGGTCAACCACC+TGG + chr1_2:75448109-75448128 Msa0092730:intron 55.0%
AAGTTTGAGAGGCGGGATGC+AGG + chr1_2:75448636-75448655 Msa0092730:intron 55.0%
GGCCCTGATGAGTCTTCAGT+TGG + chr1_2:75448975-75448994 Msa0092730:intron 55.0%
GGGCCAACTGAAGACTCATC+AGG - chr1_2:75448981-75449000 None:intergenic 55.0%
!! TTTAGGGTTGGCCGTCGTCA+AGG - chr1_2:75449187-75449206 None:intergenic 55.0%
GACGGCCAACCCTAAAAACC+TGG + chr1_2:75449191-75449210 Msa0092730:intron 55.0%
GCTGTTACCAGAGCAGGTTC+TGG - chr1_2:75449219-75449238 None:intergenic 55.0%
! CCACCATGCCTTTTCCCACT+TGG - chr1_2:75449662-75449681 None:intergenic 55.0%
! CCAAGTGGGAAAAGGCATGG+TGG + chr1_2:75449659-75449678 Msa0092730:intron 55.0%
! AGTGGGAAAAGGCATGGTGG+TGG + chr1_2:75449662-75449681 Msa0092730:intron 55.0%
ACGGCCAGGAATCACAGTGA+TGG - chr1_2:75450043-75450062 None:intergenic 55.0%
AGCAGCTGCTTCTCGCTTCT+TGG - chr1_2:75450124-75450143 None:intergenic 55.0%
GCAGGACAAGGAGCGAGTTG+TGG + chr1_2:75445382-75445401 Msa0092730:CDS 60.0%
AGTTGATCGGCCTAGGGCAG+AGG + chr1_2:75448053-75448072 Msa0092730:intron 60.0%
!! CCAGAGCAGGTTCTGGATCC+AGG - chr1_2:75449212-75449231 None:intergenic 60.0%
CCTGGATCCAGAACCTGCTC+TGG + chr1_2:75449209-75449228 Msa0092730:intron 60.0%
AGTCCTGAGTGTGTGAGGGG+AGG + chr1_2:75449366-75449385 Msa0092730:intron 60.0%
ACACCTCCCCTCACACACTC+AGG - chr1_2:75449372-75449391 None:intergenic 60.0%
CATGCTCGGCAACGGCAGTG+CGG + chr1_2:75449113-75449132 Msa0092730:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 75444950 75450587 75444950 ID=Msa0092730;Name=Msa0092730
chr1_2 mRNA 75444950 75450587 75444950 ID=Msa0092730-mRNA-1;Parent=Msa0092730;Name=Msa0092730-mRNA-1;_AED=0.01;_eAED=0.01;_QI=94|1|1|1|1|1|4|423|257
chr1_2 exon 75444950 75445106 75444950 ID=Msa0092730-mRNA-1:exon:26536;Parent=Msa0092730-mRNA-1
chr1_2 exon 75445178 75445517 75445178 ID=Msa0092730-mRNA-1:exon:26537;Parent=Msa0092730-mRNA-1
chr1_2 exon 75446505 75446656 75446505 ID=Msa0092730-mRNA-1:exon:26538;Parent=Msa0092730-mRNA-1
chr1_2 exon 75449946 75450587 75449946 ID=Msa0092730-mRNA-1:exon:26539;Parent=Msa0092730-mRNA-1
chr1_2 five_prime_UTR 75444950 75445043 75444950 ID=Msa0092730-mRNA-1:five_prime_utr;Parent=Msa0092730-mRNA-1
chr1_2 CDS 75445044 75445106 75445044 ID=Msa0092730-mRNA-1:cds;Parent=Msa0092730-mRNA-1
chr1_2 CDS 75445178 75445517 75445178 ID=Msa0092730-mRNA-1:cds;Parent=Msa0092730-mRNA-1
chr1_2 CDS 75446505 75446656 75446505 ID=Msa0092730-mRNA-1:cds;Parent=Msa0092730-mRNA-1
chr1_2 CDS 75449946 75450164 75449946 ID=Msa0092730-mRNA-1:cds;Parent=Msa0092730-mRNA-1
chr1_2 three_prime_UTR 75450165 75450587 75450165 ID=Msa0092730-mRNA-1:three_prime_utr;Parent=Msa0092730-mRNA-1
Gene Sequence

>Msa0092730

ATGAGTGCTGCTGCTTCTCTTATTCCTGTTTCCTGGTTACCCTCTCTCGCTTCTCCATTCAAGGGAAATGTGAAAACCTTGGTAGCAAAACCATATCTATGTCCATGTCTTAAAATTCAGCGAATGAAACCTCGTGTTTTTGTTGTTAATAAGGCTGCTTCTGCTTCGGTGAAACCAGCAGGTGAAAATGTTCGGTTTCGGTTGGACAATTTGGGTCCACAACCAGGTTCAAGAAAGAGAGCAAAGAGAAAGGGAAGAGGTATTGCCGCAGGACAAGGAGCGAGTTGTGGTTTTGGAATGAGAGGTCAAAAATCTCGATCTGGACCTGGTATCATGAGAGGTTTTGAAGGTGGTCAGATGCCACTTTATCGACGATTGCCCAAACTTAGAGGAATTGCAGGAGGTATGCATGCTGGATTGCCGAAATATGTCCACATCAATCTGGTAGACATAGAAGATGCTGGATTTCAAGAAGGGGAAGAGGTGTCTCTGGAGACACTGACGGAGAAACGTGTGATTAACCCATCAGGAAGGGAACGGAAACTTCTATTGAAGGTTTTGGGTGAAGGAGAACTAAGCAAGAAGTTGACAATAAAAGCTGGTGCCTTTTCCACATCAGCGAAGGAGAAACTTGAGTCTGCTGGTTGTTCCATCACTGTGATTCCTGGCCGTAAGAAATGGGTTAAGCCATCAGTTGCCAAAAATCTTGCACGTGCCGACGAATACTTCGCCAAGAAGCGAGAAGCAGCTGCTTCTGAACCAGATTCTGTTTAA

Protein sequence

>Msa0092730

MSAAASLIPVSWLPSLASPFKGNVKTLVAKPYLCPCLKIQRMKPRVFVVNKAASASVKPAGENVRFRLDNLGPQPGSRKRAKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVHINLVDIEDAGFQEGEEVSLETLTEKRVINPSGRERKLLLKVLGEGELSKKLTIKAGAFSTSAKEKLESAGCSITVIPGRKKWVKPSVAKNLARADEYFAKKREAAASEPDSV*