AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1209150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1209150 MtrunA17_Chr4g0070201 95.257 253 12 0 1 253 1 253 1.08e-174 481
Msa1209150 MtrunA17_Chr2g0301241 76.378 254 59 1 1 253 1 254 5.23e-142 398
Msa1209150 MtrunA17_Chr3g0139681 37.895 95 57 2 158 252 3 95 8.36e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1209150 AT5G20720.1 75.294 255 59 2 1 253 1 253 1.25e-135 382
Msa1209150 AT5G20720.2 75.294 255 59 2 1 253 1 253 1.25e-135 382
Msa1209150 AT5G20720.4 75.294 255 59 2 1 253 1 253 1.25e-135 382
Msa1209150 AT5G20720.3 75.294 255 59 2 1 253 1 253 1.25e-135 382

Find 75 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCTATCCTCTCTTAATTT+TGG 0.185301 8_1:-67579572 Msa1209150:exon
ATAAAACCCAAATCTATCTT+AGG 0.191322 8_1:-67581863 Msa1209150:five_prime_UTR
GAAGTCATTCCCTGCATATT+TGG 0.259970 8_1:+67579644 None:intergenic
AACTGTATTCCCGGGTGAAA+TGG 0.321202 8_1:+67579674 None:intergenic
CCTCGTAACAATGCTAGAAT+TGG 0.335567 8_1:-67581555 Msa1209150:CDS
CACGAACGAAGCTTACAAAA+TGG 0.352042 8_1:+67581816 None:intergenic
TTCCCGGGTGAAATGGATAA+TGG 0.363835 8_1:+67579681 None:intergenic
CGTGGCACACTTTGTTGATA+AGG 0.388179 8_1:-67581797 Msa1209150:intron
TTTAAGATCTTTGACCTCTT+CGG 0.402758 8_1:+67580417 None:intergenic
AGGAACCTTTCTTCCTTTGA+AGG 0.413360 8_1:-67581603 Msa1209150:CDS
GGAGTACAAAACTGTATTCC+CGG 0.420138 8_1:+67579665 None:intergenic
TATCAAGACTCTGTCATTCA+AGG 0.421253 8_1:+67580393 None:intergenic
TAAAACCCAAATCTATCTTA+GGG 0.442509 8_1:-67581862 Msa1209150:five_prime_UTR
CCTTCGTCATCCACAGGCCC+TGG 0.444066 8_1:+67579714 None:intergenic
GGCTTTGATTGAGCAGTTGA+TGG 0.449739 8_1:+67580704 None:intergenic
CTGTTGCCTTCGTCATCCAC+AGG 0.452383 8_1:+67579708 None:intergenic
CAGGTGATAGCTGTTGGTCC+AGG 0.460455 8_1:-67579732 Msa1209150:CDS
GAATGACAGAGTCTTGATAA+AGG 0.473936 8_1:-67580389 Msa1209150:intron
TAATTTACTAAACATCCATC+TGG 0.481409 8_1:+67579318 None:intergenic
TTAAGAACAACACATTTCAA+TGG 0.489464 8_1:-67581661 Msa1209150:exon
GCAATCCTTCAAAGGAAGAA+AGG 0.496887 8_1:+67581598 None:intergenic
ACGAACGAAGCTTACAAAAT+GGG 0.497890 8_1:+67581817 None:intergenic
GCCAATGGATGGCTTATCCT+TGG 0.505865 8_1:+67580155 None:intergenic
AATGACTTCAAAGGCAAAGA+TGG 0.508584 8_1:-67579630 Msa1209150:CDS
TGCTGGTGGTTTGTTGCTCA+CGG 0.524264 8_1:-67580184 Msa1209150:CDS
ATCAAGACTCTGTCATTCAA+GGG 0.529761 8_1:+67580394 None:intergenic
CTGCTCAATCAAAGCCTCAA+GGG 0.533192 8_1:-67580697 Msa1209150:CDS
GAATCATATGCATGTTTGAT+CGG 0.537354 8_1:-67579281 Msa1209150:three_prime_UTR
GTTGGAGACGGAAAGACAGT+TGG 0.541212 8_1:-67580659 Msa1209150:CDS
AAGCTTACCGTGCCAATGGA+TGG 0.542126 8_1:+67580144 None:intergenic
TTGGAGACGGAAAGACAGTT+GGG 0.547663 8_1:-67580658 Msa1209150:CDS
AGAAAAGCTTACCGTGCCAA+TGG 0.548046 8_1:+67580140 None:intergenic
GGAACTGAAGTGGAGTTCAA+TGG 0.549387 8_1:-67580490 Msa1209150:CDS
AGCTGTTGGTCCAGGGCCTG+TGG 0.552111 8_1:-67579724 Msa1209150:CDS
GGAAGTTCGCAATCCTTCAA+AGG 0.561777 8_1:+67581590 None:intergenic
GCGGCTTTAACAACAATAGA+CGG 0.565089 8_1:+67581510 None:intergenic
GAGGTAGTTGCTGTTGGAGA+CGG 0.565613 8_1:-67580671 Msa1209150:CDS
TTCAAAACATCTTATACTGA+AGG 0.568271 8_1:-67580467 Msa1209150:CDS
CATACAACTGTCAAGCCACT+AGG 0.568378 8_1:-67580788 Msa1209150:CDS
ACCAAGGATAAGCCATCCAT+TGG 0.568643 8_1:-67580156 Msa1209150:CDS
TATGCAGGGAATGACTTCAA+AGG 0.569312 8_1:-67579639 Msa1209150:CDS
TTTGAGAGCCTCAGATGTCA+TGG 0.571249 8_1:-67579592 Msa1209150:CDS
GAGTACAAAACTGTATTCCC+GGG 0.572521 8_1:+67579666 None:intergenic
CTGAAGGATGATGACATCGT+TGG 0.572824 8_1:-67580451 Msa1209150:CDS
TGCTCAATCAAAGCCTCAAG+GGG 0.578517 8_1:-67580696 Msa1209150:CDS
AGGTGATAGCTGTTGGTCCA+GGG 0.579593 8_1:-67579731 Msa1209150:CDS
AAAGTATGCAGGAACTGAAG+TGG 0.581171 8_1:-67580500 Msa1209150:CDS
ACTGCTCAATCAAAGCCTCA+AGG 0.582194 8_1:-67580698 Msa1209150:CDS
GTTGTGTACTCAAAGTATGC+AGG 0.590902 8_1:-67580511 Msa1209150:CDS
AAACCATTATCCATTTCACC+CGG 0.592297 8_1:-67579684 Msa1209150:CDS
CGGCTTTAACAACAATAGAC+GGG 0.595648 8_1:+67581511 None:intergenic
GGATGCAGAAGAGAAAACTC+AGG 0.597980 8_1:-67580741 Msa1209150:CDS
ACCAGTACTCTATCACCTAG+TGG 0.604909 8_1:+67580773 None:intergenic
GAATTGGTATTCTTACACAA+AGG 0.614844 8_1:-67581539 Msa1209150:CDS
GATGCAACAGAGATTGTGCA+AGG 0.617171 8_1:+67579441 None:intergenic
CCAGGGCCTGTGGATGACGA+AGG 0.620963 8_1:-67579714 Msa1209150:CDS
AAAATAGCCAAAATTAAGAG+AGG 0.622578 8_1:+67579565 None:intergenic
CAAAGTGGACATTAGTGTGA+AGG 0.624864 8_1:-67580630 Msa1209150:intron
GTTGCTCACGGAAGCAACCA+AGG 0.626344 8_1:-67580172 Msa1209150:CDS
GAGGATAGCCATGACATCTG+AGG 0.634831 8_1:+67579584 None:intergenic
AAAATGGGAAGAAACGTGAA+AGG 0.640266 8_1:+67581832 None:intergenic
CCAATTCTAGCATTGTTACG+AGG 0.641555 8_1:+67581555 None:intergenic
AACCATTATCCATTTCACCC+GGG 0.641591 8_1:-67579683 Msa1209150:CDS
GTTACGAGGAAAATGAATTG+CGG 0.642882 8_1:+67581569 None:intergenic
GGATAAGCCATCCATTGGCA+CGG 0.647992 8_1:-67580151 Msa1209150:intron
CTGCTTCATCGATTTCTACG+AGG 0.656045 8_1:-67581623 Msa1209150:CDS
TGGTATTCTTGAAACCGAAG+AGG 0.662324 8_1:-67580431 Msa1209150:CDS
ATGCATTGAAAACCATGAGA+AGG 0.671326 8_1:+67579387 None:intergenic
GACAGTTGGGAAGAACAAAG+TGG 0.672565 8_1:-67580645 Msa1209150:CDS
GCTGCAGGTTGCAGAAGCTG+AGG 0.680718 8_1:-67580214 Msa1209150:intron
GATGCAGAAGAGAAAACTCA+GGG 0.684794 8_1:-67580740 Msa1209150:CDS
ATGTAACAGGTGATAGCTGT+TGG 0.691284 8_1:-67579738 Msa1209150:intron
ATGCAACAGAGATTGTGCAA+GGG 0.693572 8_1:+67579442 None:intergenic
GCAGAAGAGAAAACTCAGGG+TGG 0.728959 8_1:-67580737 Msa1209150:CDS
GCTCAATCAAAGCCTCAAGG+GGG 0.730531 8_1:-67580695 Msa1209150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAAAATAATACCTT+GGG + chr8_1:67579664-67579683 None:intergenic 10.0%
!! AAAAAATAAAAATAATACCT+TGG + chr8_1:67579665-67579684 None:intergenic 10.0%
!!! AAGGTATTATTTTTATTTTT+TGG - chr8_1:67579664-67579683 Msa1209150:CDS 10.0%
!!! AGGTATTATTTTTATTTTTT+GGG - chr8_1:67579665-67579684 Msa1209150:CDS 10.0%
!!! TTTTCAAAAAATTAAAACAA+TGG - chr8_1:67581134-67581153 Msa1209150:intron 10.0%
!! AAAATAAAAATAATACCTTG+GGG + chr8_1:67579663-67579682 None:intergenic 15.0%
!! CGAAAAATATTCATAAATAT+TGG + chr8_1:67580142-67580161 None:intergenic 15.0%
!! GTTAAGACAAATAATTAAAT+GGG + chr8_1:67580828-67580847 None:intergenic 15.0%
!! AACTGCTAAAAAATTGAAAA+TGG + chr8_1:67579456-67579475 None:intergenic 20.0%
!! AAATAAAAATAATACCTTGG+GGG + chr8_1:67579662-67579681 None:intergenic 20.0%
!!! TATTTTTATTTTTTGGGTCA+TGG - chr8_1:67579671-67579690 Msa1209150:CDS 20.0%
!!! ATTTTTATTTTTTGGGTCAT+GGG - chr8_1:67579672-67579691 Msa1209150:CDS 20.0%
!!! TACATTTTCTCTTATACTAA+GGG + chr8_1:67579933-67579952 None:intergenic 20.0%
!! TTTCAGACCAATAAAAAAAA+AGG - chr8_1:67580040-67580059 Msa1209150:intron 20.0%
!! TTCAGACCAATAAAAAAAAA+GGG - chr8_1:67580041-67580060 Msa1209150:intron 20.0%
!! GAAAAATATTCAAAAATGGT+GGG + chr8_1:67580116-67580135 None:intergenic 20.0%
!! TGAAAAATATTCAAAAATGG+TGG + chr8_1:67580117-67580136 None:intergenic 20.0%
!! GTCTGAAAAATATTCAAAAA+TGG + chr8_1:67580120-67580139 None:intergenic 20.0%
!! ACAAGATGAAATTACTAATA+AGG + chr8_1:67580325-67580344 None:intergenic 20.0%
!! GGTTAAGACAAATAATTAAA+TGG + chr8_1:67580829-67580848 None:intergenic 20.0%
!! AAGTATACTGTTTCAAAAAA+AGG + chr8_1:67581026-67581045 None:intergenic 20.0%
!! CAAAAAATTAAAACAATGGA+TGG - chr8_1:67581138-67581157 Msa1209150:intron 20.0%
!!! TTTTTTTACATATATCCAGA+TGG - chr8_1:67581802-67581821 Msa1209150:five_prime_UTR 20.0%
!!! AGATAGATTTGGGTTTTATT+GGG + chr8_1:67579271-67579290 None:intergenic 25.0%
!!! AAGATAGATTTGGGTTTTAT+TGG + chr8_1:67579272-67579291 None:intergenic 25.0%
! ATAAAACCCAAATCTATCTT+AGG - chr8_1:67579272-67579291 Msa1209150:three_prime_UTR 25.0%
! TAAAACCCAAATCTATCTTA+GGG - chr8_1:67579273-67579292 Msa1209150:three_prime_UTR 25.0%
! AAAAACCCTAAGATAGATTT+GGG + chr8_1:67579281-67579300 None:intergenic 25.0%
! TAAAAACCCTAAGATAGATT+TGG + chr8_1:67579282-67579301 None:intergenic 25.0%
!!! TGATTCTAAGATTAGGTTAA+AGG + chr8_1:67579374-67579393 None:intergenic 25.0%
! TTTCTACAAAATGTAAAGTG+CGG + chr8_1:67579400-67579419 None:intergenic 25.0%
! TTAAGAACAACACATTTCAA+TGG - chr8_1:67579474-67579493 Msa1209150:three_prime_UTR 25.0%
!! ACATTTTCTCTTATACTAAG+GGG + chr8_1:67579932-67579951 None:intergenic 25.0%
!! GTACATTTTCTCTTATACTA+AGG + chr8_1:67579934-67579953 None:intergenic 25.0%
! AACATTAGAAATAATCCCAT+GGG + chr8_1:67580266-67580285 None:intergenic 25.0%
! AAACATTAGAAATAATCCCA+TGG + chr8_1:67580267-67580286 None:intergenic 25.0%
! TGTAATGTATTTCTCTTTAC+AGG - chr8_1:67580590-67580609 Msa1209150:intron 25.0%
! TTCAAAACATCTTATACTGA+AGG - chr8_1:67580668-67580687 Msa1209150:CDS 25.0%
!! CTTAACCATATTTTGCATTA+AGG - chr8_1:67580842-67580861 Msa1209150:intron 25.0%
! TAACACCTTAATGCAAAATA+TGG + chr8_1:67580850-67580869 None:intergenic 25.0%
!! TTTATTTATTGCTTTAGCTC+AGG - chr8_1:67581280-67581299 Msa1209150:intron 25.0%
! AAAATAGCCAAAATTAAGAG+AGG + chr8_1:67581573-67581592 None:intergenic 25.0%
!! TTGTAGAACCTAAATTTTTG+TGG - chr8_1:67581596-67581615 Msa1209150:CDS 25.0%
!!! CAATTTTTTATTTTGCAACG+AGG - chr8_1:67581635-67581654 Msa1209150:CDS 25.0%
!! GTGTTTTGTATTATTGTCAA+CGG - chr8_1:67581718-67581737 Msa1209150:intron 25.0%
! TAATTTACTAAACATCCATC+TGG + chr8_1:67581820-67581839 None:intergenic 25.0%
GAAAATGGAATTAATCTACG+AGG + chr8_1:67579441-67579460 None:intergenic 30.0%
GAATTGGTATTCTTACACAA+AGG - chr8_1:67579596-67579615 Msa1209150:CDS 30.0%
! TGGGTTTTCTTTATTATCTG+CGG - chr8_1:67579691-67579710 Msa1209150:CDS 30.0%
GTTGTGTTTATAAGCTATCT+TGG - chr8_1:67579784-67579803 Msa1209150:intron 30.0%
TTGAAAGAGCTTATAGCTTA+TGG + chr8_1:67579851-67579870 None:intergenic 30.0%
AATAAAAAAAAAGGGCAACC+CGG - chr8_1:67580049-67580068 Msa1209150:intron 30.0%
!! TAGAGTACTGGTAAAAATCA+AGG - chr8_1:67580373-67580392 Msa1209150:intron 30.0%
CCAAAATAAAAGAAAGACCA+AGG + chr8_1:67580565-67580584 None:intergenic 30.0%
!! CCTTGGTCTTTCTTTTATTT+TGG - chr8_1:67580562-67580581 Msa1209150:intron 30.0%
! TTTAAGATCTTTGACCTCTT+CGG + chr8_1:67580721-67580740 None:intergenic 30.0%
! CATTAAGGTGTTACGTTTAA+AGG - chr8_1:67580857-67580876 Msa1209150:intron 30.0%
GCAATGTTATATCGTATGAA+GGG - chr8_1:67581075-67581094 Msa1209150:intron 30.0%
AGAATTGCAAGAATGTGATT+TGG - chr8_1:67581107-67581126 Msa1209150:intron 30.0%
GAATTGCAAGAATGTGATTT+GGG - chr8_1:67581108-67581127 Msa1209150:intron 30.0%
AATTAAAACAATGGATGGTC+TGG - chr8_1:67581143-67581162 Msa1209150:intron 30.0%
!!! TTGTTTTGATCGAGTAGTTT+TGG - chr8_1:67581338-67581357 Msa1209150:intron 30.0%
GAATGGTTATTTACATACCT+AGG + chr8_1:67581365-67581384 None:intergenic 30.0%
! AATAACCATTCTACTCCTTT+TGG - chr8_1:67581374-67581393 Msa1209150:intron 30.0%
! TTTTGTACTCCAAATATGCA+GGG - chr8_1:67581482-67581501 Msa1209150:intron 30.0%
!! CTAAATTTTTGTGGTGTTGA+GGG - chr8_1:67581605-67581624 Msa1209150:CDS 30.0%
TGTAAAAAAACTGTTCTCGT+TGG + chr8_1:67581792-67581811 None:intergenic 30.0%
GAATCATATGCATGTTTGAT+CGG - chr8_1:67581854-67581873 Msa1209150:five_prime_UTR 30.0%
!!! ATTTGGGTTTTATTGGGTGA+CGG + chr8_1:67579265-67579284 None:intergenic 35.0%
AAAATGGGAAGAAACGTGAA+AGG + chr8_1:67579306-67579325 None:intergenic 35.0%
ACGAACGAAGCTTACAAAAT+GGG + chr8_1:67579321-67579340 None:intergenic 35.0%
!! GCGGTATTGATTCTAAGATT+AGG + chr8_1:67579381-67579400 None:intergenic 35.0%
GTTACGAGGAAAATGAATTG+CGG + chr8_1:67579569-67579588 None:intergenic 35.0%
ATCTCATAATGCACTTGAGT+GGG + chr8_1:67579877-67579896 None:intergenic 35.0%
TATCTCATAATGCACTTGAG+TGG + chr8_1:67579878-67579897 None:intergenic 35.0%
!!! GGGTTGCCCTTTTTTTTTAT+TGG + chr8_1:67580050-67580069 None:intergenic 35.0%
TAAAGGATTCCATAAGCTAG+TGG + chr8_1:67580540-67580559 None:intergenic 35.0%
TTATGGAATCCTTTAAGCCT+TGG - chr8_1:67580545-67580564 Msa1209150:intron 35.0%
AAAGAAAGACCAAGGCTTAA+AGG + chr8_1:67580557-67580576 None:intergenic 35.0%
ATGTATTTCTCTTTACAGGC+AGG - chr8_1:67580594-67580613 Msa1209150:intron 35.0%
ATCAAGACTCTGTCATTCAA+GGG + chr8_1:67580744-67580763 None:intergenic 35.0%
TATCAAGACTCTGTCATTCA+AGG + chr8_1:67580745-67580764 None:intergenic 35.0%
GAATGACAGAGTCTTGATAA+AGG - chr8_1:67580746-67580765 Msa1209150:CDS 35.0%
ACCTGCAGCATCATAATTAA+AGG + chr8_1:67580910-67580929 None:intergenic 35.0%
! TAACACCACTCTTCTAAAAG+AGG - chr8_1:67581052-67581071 Msa1209150:intron 35.0%
! AACACCACTCTTCTAAAAGA+GGG - chr8_1:67581053-67581072 Msa1209150:intron 35.0%
GGCAATGTTATATCGTATGA+AGG - chr8_1:67581074-67581093 Msa1209150:intron 35.0%
TGTTATATCGTATGAAGGGA+AGG - chr8_1:67581079-67581098 Msa1209150:intron 35.0%
ACTAGCATTATCCCTTAAGA+CGG - chr8_1:67581221-67581240 Msa1209150:intron 35.0%
AACACATTCTACCGTCTTAA+GGG + chr8_1:67581235-67581254 None:intergenic 35.0%
TACATCCAAAAGGAGTAGAA+TGG + chr8_1:67581382-67581401 None:intergenic 35.0%
TATCACCTGTTACATCCAAA+AGG + chr8_1:67581392-67581411 None:intergenic 35.0%
AAACCATTATCCATTTCACC+CGG - chr8_1:67581451-67581470 Msa1209150:intron 35.0%
! GTTTTGTACTCCAAATATGC+AGG - chr8_1:67581481-67581500 Msa1209150:intron 35.0%
AATGACTTCAAAGGCAAAGA+TGG - chr8_1:67581505-67581524 Msa1209150:CDS 35.0%
! TGGCTATCCTCTCTTAATTT+TGG - chr8_1:67581563-67581582 Msa1209150:CDS 35.0%
CCTCAACACCACAAAAATTT+AGG + chr8_1:67581607-67581626 None:intergenic 35.0%
!! CCTAAATTTTTGTGGTGTTG+AGG - chr8_1:67581604-67581623 Msa1209150:CDS 35.0%
ATGCATTGAAAACCATGAGA+AGG + chr8_1:67581751-67581770 None:intergenic 35.0%
CACGAACGAAGCTTACAAAA+TGG + chr8_1:67579322-67579341 None:intergenic 40.0%
! CATTTTGTAAGCTTCGTTCG+TGG - chr8_1:67579320-67579339 Msa1209150:three_prime_UTR 40.0%
AGGAACCTTTCTTCCTTTGA+AGG - chr8_1:67579532-67579551 Msa1209150:three_prime_UTR 40.0%
GCAATCCTTCAAAGGAAGAA+AGG + chr8_1:67579540-67579559 None:intergenic 40.0%
CCAATTCTAGCATTGTTACG+AGG + chr8_1:67579583-67579602 None:intergenic 40.0%
CCTCGTAACAATGCTAGAAT+TGG - chr8_1:67579580-67579599 Msa1209150:CDS 40.0%
! CGGCTTTAACAACAATAGAC+GGG + chr8_1:67579627-67579646 None:intergenic 40.0%
! GCGGCTTTAACAACAATAGA+CGG + chr8_1:67579628-67579647 None:intergenic 40.0%
AGAAATAATCCCATGGGACA+GGG + chr8_1:67580260-67580279 None:intergenic 40.0%
TAGAAATAATCCCATGGGAC+AGG + chr8_1:67580261-67580280 None:intergenic 40.0%
GATGCAGAAGAGAAAACTCA+GGG - chr8_1:67580395-67580414 Msa1209150:CDS 40.0%
CAAAGTGGACATTAGTGTGA+AGG - chr8_1:67580505-67580524 Msa1209150:CDS 40.0%
GTTGTGTACTCAAAGTATGC+AGG - chr8_1:67580624-67580643 Msa1209150:intron 40.0%
AAAGTATGCAGGAACTGAAG+TGG - chr8_1:67580635-67580654 Msa1209150:CDS 40.0%
TGGTATTCTTGAAACCGAAG+AGG - chr8_1:67580704-67580723 Msa1209150:CDS 40.0%
ACAGAGTCTTGATAAAGGTG+TGG - chr8_1:67580751-67580770 Msa1209150:CDS 40.0%
GCCTTTAATTATGATGCTGC+AGG - chr8_1:67580906-67580925 Msa1209150:intron 40.0%
!! ATTGCCCTCTTTTAGAAGAG+TGG + chr8_1:67581060-67581079 None:intergenic 40.0%
CAACACATTCTACCGTCTTA+AGG + chr8_1:67581236-67581255 None:intergenic 40.0%
! ATTGCTTTAGCTCAGGTCAT+TGG - chr8_1:67581287-67581306 Msa1209150:intron 40.0%
! TTTAGCTCAGGTCATTGGTT+TGG - chr8_1:67581292-67581311 Msa1209150:intron 40.0%
! CTACTCCTTTTGGATGTAAC+AGG - chr8_1:67581384-67581403 Msa1209150:intron 40.0%
ATGTAACAGGTGATAGCTGT+TGG - chr8_1:67581397-67581416 Msa1209150:intron 40.0%
AACCATTATCCATTTCACCC+GGG - chr8_1:67581452-67581471 Msa1209150:intron 40.0%
GAGTACAAAACTGTATTCCC+GGG + chr8_1:67581472-67581491 None:intergenic 40.0%
GGAGTACAAAACTGTATTCC+CGG + chr8_1:67581473-67581492 None:intergenic 40.0%
GAAGTCATTCCCTGCATATT+TGG + chr8_1:67581494-67581513 None:intergenic 40.0%
TATGCAGGGAATGACTTCAA+AGG - chr8_1:67581496-67581515 Msa1209150:CDS 40.0%
ATGCAACAGAGATTGTGCAA+GGG + chr8_1:67581696-67581715 None:intergenic 40.0%
CGTGGCACACTTTGTTGATA+AGG - chr8_1:67579338-67579357 Msa1209150:three_prime_UTR 45.0%
!! CTGCTTCATCGATTTCTACG+AGG - chr8_1:67579512-67579531 Msa1209150:three_prime_UTR 45.0%
GGAAGTTCGCAATCCTTCAA+AGG + chr8_1:67579548-67579567 None:intergenic 45.0%
CTACAGCGAGAGATCAAAGT+AGG - chr8_1:67579982-67580001 Msa1209150:intron 45.0%
TATACATAAGCCCTGTCCCA+TGG - chr8_1:67580247-67580266 Msa1209150:intron 45.0%
ATACATAAGCCCTGTCCCAT+GGG - chr8_1:67580248-67580267 Msa1209150:intron 45.0%
CATACAACTGTCAAGCCACT+AGG - chr8_1:67580347-67580366 Msa1209150:intron 45.0%
ACCAGTACTCTATCACCTAG+TGG + chr8_1:67580365-67580384 None:intergenic 45.0%
GGATGCAGAAGAGAAAACTC+AGG - chr8_1:67580394-67580413 Msa1209150:CDS 45.0%
! GGCTTTGATTGAGCAGTTGA+TGG + chr8_1:67580434-67580453 None:intergenic 45.0%
ACTGCTCAATCAAAGCCTCA+AGG - chr8_1:67580437-67580456 Msa1209150:CDS 45.0%
CTGCTCAATCAAAGCCTCAA+GGG - chr8_1:67580438-67580457 Msa1209150:CDS 45.0%
TGCTCAATCAAAGCCTCAAG+GGG - chr8_1:67580439-67580458 Msa1209150:CDS 45.0%
TTGGAGACGGAAAGACAGTT+GGG - chr8_1:67580477-67580496 Msa1209150:CDS 45.0%
GACAGTTGGGAAGAACAAAG+TGG - chr8_1:67580490-67580509 Msa1209150:CDS 45.0%
AGTGGACATTAGTGTGAAGG+TGG - chr8_1:67580508-67580527 Msa1209150:CDS 45.0%
GTGGACATTAGTGTGAAGGT+GGG - chr8_1:67580509-67580528 Msa1209150:CDS 45.0%
GGAACTGAAGTGGAGTTCAA+TGG - chr8_1:67580645-67580664 Msa1209150:CDS 45.0%
CTGAAGGATGATGACATCGT+TGG - chr8_1:67580684-67580703 Msa1209150:CDS 45.0%
GAAGCTGAGGAAAAAACTGC+TGG - chr8_1:67580934-67580953 Msa1209150:intron 45.0%
ACCAAGGATAAGCCATCCAT+TGG - chr8_1:67580979-67580998 Msa1209150:intron 45.0%
AGAAAAGCTTACCGTGCCAA+TGG + chr8_1:67580998-67581017 None:intergenic 45.0%
GGGATAATGCTAGTTGCTAC+AGG + chr8_1:67581215-67581234 None:intergenic 45.0%
!!! GATCGAGTAGTTTTGGTCCT+AGG - chr8_1:67581345-67581364 Msa1209150:intron 45.0%
TTCCCGGGTGAAATGGATAA+TGG + chr8_1:67581457-67581476 None:intergenic 45.0%
AACTGTATTCCCGGGTGAAA+TGG + chr8_1:67581464-67581483 None:intergenic 45.0%
TTTGAGAGCCTCAGATGTCA+TGG - chr8_1:67581543-67581562 Msa1209150:CDS 45.0%
GATGCAACAGAGATTGTGCA+AGG + chr8_1:67581697-67581716 None:intergenic 45.0%
! AACGGCTTTTCACCTTCTCA+TGG - chr8_1:67581736-67581755 Msa1209150:intron 45.0%
TACCTTGGGGGTAACAACAG+TGG + chr8_1:67579650-67579669 None:intergenic 50.0%
GCCACTAGGTGATAGAGTAC+TGG - chr8_1:67580361-67580380 Msa1209150:intron 50.0%
GCAGAAGAGAAAACTCAGGG+TGG - chr8_1:67580398-67580417 Msa1209150:CDS 50.0%
GCTCAATCAAAGCCTCAAGG+GGG - chr8_1:67580440-67580459 Msa1209150:CDS 50.0%
! GAGGTAGTTGCTGTTGGAGA+CGG - chr8_1:67580464-67580483 Msa1209150:CDS 50.0%
GTTGGAGACGGAAAGACAGT+TGG - chr8_1:67580476-67580495 Msa1209150:CDS 50.0%
! TGGGTGATGCCACTAGCTTA+TGG - chr8_1:67580528-67580547 Msa1209150:intron 50.0%
GGGCAGATCATCAAGACAAC+TGG + chr8_1:67580808-67580827 None:intergenic 50.0%
GCTGAGGAAAAAACTGCTGG+TGG - chr8_1:67580937-67580956 Msa1209150:intron 50.0%
!! TGCTGGTGGTTTGTTGCTCA+CGG - chr8_1:67580951-67580970 Msa1209150:intron 50.0%
GCCAATGGATGGCTTATCCT+TGG + chr8_1:67580983-67581002 None:intergenic 50.0%
GGATAAGCCATCCATTGGCA+CGG - chr8_1:67580984-67581003 Msa1209150:intron 50.0%
AAGCTTACCGTGCCAATGGA+TGG + chr8_1:67580994-67581013 None:intergenic 50.0%
AGGTGATAGCTGTTGGTCCA+GGG - chr8_1:67581404-67581423 Msa1209150:intron 50.0%
GAGGATAGCCATGACATCTG+AGG + chr8_1:67581554-67581573 None:intergenic 50.0%
CTTGGGGGTAACAACAGTGG+CGG + chr8_1:67579647-67579666 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG + chr8_1:67580071-67580090 None:intergenic 55.0%
CACTAAAGCTCCCGCATACG+CGG - chr8_1:67580074-67580093 Msa1209150:intron 55.0%
ACTAAAGCTCCCGCATACGC+GGG - chr8_1:67580075-67580094 Msa1209150:intron 55.0%
ATCAAAGCCTCAAGGGGGTG+AGG - chr8_1:67580445-67580464 Msa1209150:CDS 55.0%
GTTGCTCACGGAAGCAACCA+AGG - chr8_1:67580963-67580982 Msa1209150:intron 55.0%
CAGGTGATAGCTGTTGGTCC+AGG - chr8_1:67581403-67581422 Msa1209150:intron 55.0%
CTGTTGCCTTCGTCATCCAC+AGG + chr8_1:67581430-67581449 None:intergenic 55.0%
CGCCACTGTTGTTACCCCCA+AGG - chr8_1:67579645-67579664 Msa1209150:CDS 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG + chr8_1:67580070-67580089 None:intergenic 60.0%
CTAAAGCTCCCGCATACGCG+GGG - chr8_1:67580076-67580095 Msa1209150:intron 60.0%
! AAATGGTGGGACCCCCTTCC+CGG + chr8_1:67580103-67580122 None:intergenic 60.0%
GCAACTACCTCACCCCCTTG+AGG + chr8_1:67580455-67580474 None:intergenic 60.0%
GGGGGTGAGGTAGTTGCTGT+TGG - chr8_1:67580458-67580477 Msa1209150:CDS 60.0%
GCTGCAGGTTGCAGAAGCTG+AGG - chr8_1:67580921-67580940 Msa1209150:intron 60.0%
AGCTGTTGGTCCAGGGCCTG+TGG - chr8_1:67581411-67581430 Msa1209150:intron 65.0%
CCTTCGTCATCCACAGGCCC+TGG + chr8_1:67581424-67581443 None:intergenic 65.0%
CCAGGGCCTGTGGATGACGA+AGG - chr8_1:67581421-67581440 Msa1209150:intron 65.0%
TTCCCGGACCCCGCGTATGC+GGG + chr8_1:67580087-67580106 None:intergenic 70.0%
CTTCCCGGACCCCGCGTATG+CGG + chr8_1:67580088-67580107 None:intergenic 70.0%
GCATACGCGGGGTCCGGGAA+GGG - chr8_1:67580087-67580106 Msa1209150:intron 70.0%
CATACGCGGGGTCCGGGAAG+GGG - chr8_1:67580088-67580107 Msa1209150:intron 70.0%
ATACGCGGGGTCCGGGAAGG+GGG - chr8_1:67580089-67580108 Msa1209150:intron 70.0%
GCTCCCGCATACGCGGGGTC+CGG - chr8_1:67580081-67580100 Msa1209150:intron 75.0%
CTCCCGCATACGCGGGGTCC+GGG - chr8_1:67580082-67580101 Msa1209150:intron 75.0%
CGCATACGCGGGGTCCGGGA+AGG - chr8_1:67580086-67580105 Msa1209150:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 67579257 67581900 67579257 ID=Msa1209150;Name=Msa1209150
chr8_1 mRNA 67579257 67581900 67579257 ID=Msa1209150-mRNA-1;Parent=Msa1209150;Name=Msa1209150-mRNA-1;_AED=0.02;_eAED=0.02;_QI=125|1|1|1|0.8|0.66|6|321|253
chr8_1 exon 67579257 67579751 67579257 ID=Msa1209150-mRNA-1:exon:22343;Parent=Msa1209150-mRNA-1
chr8_1 exon 67580152 67580229 67580152 ID=Msa1209150-mRNA-1:exon:22342;Parent=Msa1209150-mRNA-1
chr8_1 exon 67580390 67580545 67580390 ID=Msa1209150-mRNA-1:exon:22341;Parent=Msa1209150-mRNA-1
chr8_1 exon 67580631 67580810 67580631 ID=Msa1209150-mRNA-1:exon:22340;Parent=Msa1209150-mRNA-1
chr8_1 exon 67581491 67581686 67581491 ID=Msa1209150-mRNA-1:exon:22339;Parent=Msa1209150-mRNA-1
chr8_1 exon 67581798 67581900 67581798 ID=Msa1209150-mRNA-1:exon:22338;Parent=Msa1209150-mRNA-1
chr8_1 five_prime_UTR 67581798 67581900 67581798 ID=Msa1209150-mRNA-1:five_prime_utr;Parent=Msa1209150-mRNA-1
chr8_1 five_prime_UTR 67581665 67581686 67581665 ID=Msa1209150-mRNA-1:five_prime_utr;Parent=Msa1209150-mRNA-1
chr8_1 CDS 67581491 67581664 67581491 ID=Msa1209150-mRNA-1:cds;Parent=Msa1209150-mRNA-1
chr8_1 CDS 67580631 67580810 67580631 ID=Msa1209150-mRNA-1:cds;Parent=Msa1209150-mRNA-1
chr8_1 CDS 67580390 67580545 67580390 ID=Msa1209150-mRNA-1:cds;Parent=Msa1209150-mRNA-1
chr8_1 CDS 67580152 67580229 67580152 ID=Msa1209150-mRNA-1:cds;Parent=Msa1209150-mRNA-1
chr8_1 CDS 67579578 67579751 67579578 ID=Msa1209150-mRNA-1:cds;Parent=Msa1209150-mRNA-1
chr8_1 three_prime_UTR 67579257 67579577 67579257 ID=Msa1209150-mRNA-1:three_prime_utr;Parent=Msa1209150-mRNA-1
Gene Sequence

>Msa1209150

ATGGCGACTACTCAGCTTACTGCTTCATCGATTTCTACGAGGAACCTTTCTTCCTTTGAAGGATTGCGAACTTCCGCAATTCATTTTCCTCGTAACAATGCTAGAATTGGTATTCTTACACAAAGGTCGTTCCCGTCTATTGTTGTTAAAGCCGCCACTGTTGTTACCCCCAAGCATACAACTGTCAAGCCACTAGGTGATAGAGTACTGGTAAAAATCAAGGATGCAGAAGAGAAAACTCAGGGTGGAATTTTGCTGCCATCAACTGCTCAATCAAAGCCTCAAGGGGGTGAGGTAGTTGCTGTTGGAGACGGAAAGACAGTTGGGAAGAACAAAGTGGACATTAGTGTGAAGGCAGGTGCACAAGTTGTGTACTCAAAGTATGCAGGAACTGAAGTGGAGTTCAATGGTTCAAAACATCTTATACTGAAGGATGATGACATCGTTGGTATTCTTGAAACCGAAGAGGTCAAAGATCTTAAACCCTTGAATGACAGAGTCTTGATAAAGGTTGCAGAAGCTGAGGAAAAAACTGCTGGTGGTTTGTTGCTCACGGAAGCAACCAAGGATAAGCCATCCATTGGCACGGTGATAGCTGTTGGTCCAGGGCCTGTGGATGACGAAGGCAACAGAAAACCATTATCCATTTCACCCGGGAATACAGTTTTGTACTCCAAATATGCAGGGAATGACTTCAAAGGCAAAGATGGTTCTGATTATATTGCTTTGAGAGCCTCAGATGTCATGGCTATCCTCTCTTAA

Protein sequence

>Msa1209150

MATTQLTASSISTRNLSSFEGLRTSAIHFPRNNARIGILTQRSFPSIVVKAATVVTPKHTTVKPLGDRVLVKIKDAEEKTQGGILLPSTAQSKPQGGEVVAVGDGKTVGKNKVDISVKAGAQVVYSKYAGTEVEFNGSKHLILKDDDIVGILETEEVKDLKPLNDRVLIKVAEAEEKTAGGLLLTEATKDKPSIGTVIAVGPGPVDDEGNRKPLSISPGNTVLYSKYAGNDFKGKDGSDYIALRASDVMAILS*