AlfalfaGEDB | Msa0705440

M. sativa cultivar zhongmu-4 / Msa0705440

KEGG: K09903
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0705440	XP_024629653.2	89.241	158	13	2	1	158	1	154	6.50e-77	242

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0705440	sp\|Q9LSA9\|PUMPK_ARATH	83.333	84	12	1	77	158	85	168	8.38e-42	145

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0705440	A0A396GWA1	89.241	158	13	2	1	158	1	154	3.10e-77	242

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001460	Msa0705440	0.805254	1.458840e-49	-8.615850e-47
Msa0004350	Msa0705440	0.805864	1.086681e-49	-8.615850e-47
Msa0017120	Msa0705440	0.812238	4.688240e-51	-8.615850e-47
Msa0017940	Msa0705440	0.804762	1.849236e-49	-8.615850e-47
Msa0020630	Msa0705440	0.809003	2.344829e-50	-8.615850e-47
Msa0030000	Msa0705440	0.815635	8.357318e-52	-8.615850e-47
Msa0030400	Msa0705440	0.842684	2.225241e-58	-8.615850e-47
Msa0030730	Msa0705440	0.840537	8.191824e-58	-8.615850e-47
Msa0031720	Msa0705440	0.805575	1.249352e-49	-8.615850e-47
Msa0037820	Msa0705440	0.825796	3.854637e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0705440	MtrunA17_Chr8g0384081	89.241	158	13	2	1	158	1	154	5.98e-81	242
Msa0705440	MtrunA17_Chr1g0179531	51.948	77	37	0	82	158	269	345	4.38e-21	88.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0705440	AT3G18680.1	83.333	84	12	1	77	158	85	168	8.52e-43	145
Msa0705440	AT3G18680.2	83.333	84	12	1	77	158	85	168	1.01e-42	145
Msa0705440	AT3G10030.2	55.844	77	34	0	81	157	297	373	7.82e-22	91.3
Msa0705440	AT3G10030.1	55.844	77	34	0	81	157	297	373	8.33e-22	91.3

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Find 116 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAATGCACCTCCATTT+TGG	0.219123	4_4:-78100812	None:intergenic
AAATAATGAAGTGCGAGAAG+GGG	0.626409	4_4:-78097838	None:intergenic
AACAAAAGATCTGTCAGTGA+TGG	0.552161	4_4:+78100445	Msa0705440:three_prime_UTR
AACATAGAGAAGGCCATTAA+AGG	0.337991	4_4:+78100661	Msa0705440:three_prime_UTR
AACCTGGAATTGAAGGCATC+AGG	0.382214	4_4:-78097918	None:intergenic
AACTGCATTTCGCATGTCTG+AGG	0.580501	4_4:+78099979	Msa0705440:three_prime_UTR
AAGTGAAAGCGTAATAGGAA+GGG	0.573559	4_4:+78097693	Msa0705440:five_prime_UTR
AAGTGCTGCGGCAGTGTCTG+TGG	0.607764	4_4:-78100095	None:intergenic
AATGCAGTTTGTACTCTAGT+TGG	0.432080	4_4:-78099965	None:intergenic
AATGTAATGGAGCCACTACC+AGG	0.477038	4_4:-78101016	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAGAAGAAGAAGAAGATA+AGG	-	chr4_4:78097784-78097803	None:intergenic	30.0%
GGCATGAAGGATAAATAAAA+AGG	-	chr4_4:78097960-78097979	None:intergenic	30.0%
TAGTAAATTAACAGGAACGA+AGG	-	chr4_4:78097981-78098000	None:intergenic	30.0%
TCGTTCCTGTTAATTTACTA+TGG	+	chr4_4:78097981-78098000	Msa0705440:intron	30.0%
ATGAATCTAGTAAGCCAAAA+TGG	+	chr4_4:78098079-78098098	Msa0705440:CDS	30.0%
CAATATTGTAACTGAAAGCT+CGG	-	chr4_4:78098260-78098279	None:intergenic	30.0%
AAAAAGTGAGATGAAATCTG+GGG	-	chr4_4:78098888-78098907	None:intergenic	30.0%
TGTAGTCACCAGTATTATTT+GGG	+	chr4_4:78099322-78099341	Msa0705440:intron	30.0%
ATAAACTCCCCAAATAATAC+TGG	-	chr4_4:78099333-78099352	None:intergenic	30.0%
TCTTGGCTAAAAGAGATTAA+GGG	-	chr4_4:78099551-78099570	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	78097676	78101091	78097676	ID=Msa0705440;Name=Msa0705440
chr4_4	mRNA	78097676	78101091	78097676	ID=Msa0705440-mRNA-1;Parent=Msa0705440;Name=Msa0705440-mRNA-1;_AED=0.01;_eAED=0.01;_QI=74\|1\|1\|1\|1\|0.83\|6\|1225\|158
chr4_4	exon	78097676	78097937	78097676	ID=Msa0705440-mRNA-1:exon:24882;Parent=Msa0705440-mRNA-1
chr4_4	exon	78098032	78098170	78098032	ID=Msa0705440-mRNA-1:exon:24883;Parent=Msa0705440-mRNA-1
chr4_4	exon	78099066	78099119	78099066	ID=Msa0705440-mRNA-1:exon:24884;Parent=Msa0705440-mRNA-1
chr4_4	exon	78099447	78100130	78099447	ID=Msa0705440-mRNA-1:exon:24885;Parent=Msa0705440-mRNA-1
chr4_4	exon	78100333	78100509	78100333	ID=Msa0705440-mRNA-1:exon:24886;Parent=Msa0705440-mRNA-1
chr4_4	exon	78100632	78101091	78100632	ID=Msa0705440-mRNA-1:exon:24887;Parent=Msa0705440-mRNA-1
chr4_4	five_prime_UTR	78097676	78097749	78097676	ID=Msa0705440-mRNA-1:five_prime_utr;Parent=Msa0705440-mRNA-1
chr4_4	CDS	78097750	78097937	78097750	ID=Msa0705440-mRNA-1:cds;Parent=Msa0705440-mRNA-1
chr4_4	CDS	78098032	78098170	78098032	ID=Msa0705440-mRNA-1:cds;Parent=Msa0705440-mRNA-1
chr4_4	CDS	78099066	78099119	78099066	ID=Msa0705440-mRNA-1:cds;Parent=Msa0705440-mRNA-1
chr4_4	CDS	78099447	78099542	78099447	ID=Msa0705440-mRNA-1:cds;Parent=Msa0705440-mRNA-1
chr4_4	three_prime_UTR	78099543	78100130	78099543	ID=Msa0705440-mRNA-1:three_prime_utr;Parent=Msa0705440-mRNA-1
chr4_4	three_prime_UTR	78100333	78100509	78100333	ID=Msa0705440-mRNA-1:three_prime_utr;Parent=Msa0705440-mRNA-1
chr4_4	three_prime_UTR	78100632	78101091	78100632	ID=Msa0705440-mRNA-1:three_prime_utr;Parent=Msa0705440-mRNA-1

Gene Sequence

>Msa0705440

ATGGCAGTTTCAATTCCTCTATTCTCCTCCACCTTATCTTCTTCTTCTTCTTCTTCTATTTCTCTTTCTTCATCTTCAAAACTTCACTCCCCTTCTCGCACTTCATTATTTCGTCGTAATTCAACTTCCTTCACTATTCGCTCTTCTTATTCCGGAAATGGTTCTTCCCCTGATGCCTTCAATTCCAGGAATTCTGAAATTATTCCATCCATATCTCCGTTTGCACTGTCAATGAATGAATCTAGTAAGCCAAAATGGAGAAGGGTTTTGCTCAAAGTTAGCGGAGAAGCACTTGCTGGAGATCAAGCTCAGAATATTGACCCTAAGGTAACTATGTCCATTGCAAGGGAAGTGGCAGCTGTAACCCGCCATGGCATTGAGGTTGCACTAGTTGTTGGTGGGGGTAACATCTTCCGTGGAGCCTCGTGGGCTGGAAGTAGTGGTCTTGACCGCTCATCTGCTGATTATATTGGGTGA

Protein sequence

>Msa0705440

MAVSIPLFSSTLSSSSSSSISLSSSSKLHSPSRTSLFRRNSTSFTIRSSYSGNGSSPDAFNSRNSEIIPSISPFALSMNESSKPKWRRVLLKVSGEALAGDQAQNIDPKVTMSIAREVAAVTRHGIEVALVVGGGNIFRGASWAGSSGLDRSSADYIG*