Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382860 | XP_024633382.1 | 94.543 | 678 | 36 | 1 | 1 | 677 | 1 | 678 | 0.0 | 1312 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382860 | sp|Q9SUU1|BOR7_ARATH | 68.049 | 651 | 195 | 4 | 4 | 642 | 7 | 656 | 0.0 | 926 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382860 | G7JBM4 | 94.543 | 678 | 36 | 1 | 1 | 677 | 1 | 678 | 0.0 | 1312 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037180 | Msa0382860 | 0.817628 | 2.988174e-52 | -8.615850e-47 |
| Msa0092220 | Msa0382860 | 0.806302 | 8.788951e-50 | -8.615850e-47 |
| Msa0143280 | Msa0382860 | -0.819648 | 1.040050e-52 | -8.615850e-47 |
| Msa0163960 | Msa0382860 | -0.804471 | 2.126649e-49 | -8.615850e-47 |
| Msa0177320 | Msa0382860 | 0.802901 | 4.502288e-49 | -8.615850e-47 |
| Msa0180100 | Msa0382860 | -0.839122 | 1.913983e-57 | -8.615850e-47 |
| Msa0183200 | Msa0382860 | -0.800790 | 1.221547e-48 | -8.615850e-47 |
| Msa0184510 | Msa0382860 | -0.852399 | 4.735885e-61 | -8.615850e-47 |
| Msa0207680 | Msa0382860 | 0.845477 | 3.963465e-59 | -8.615850e-47 |
| Msa0209360 | Msa0382860 | 0.818290 | 2.117031e-52 | -8.615850e-47 |
| Msa0225070 | Msa0382860 | -0.802793 | 4.740279e-49 | -8.615850e-47 |
| Msa0226450 | Msa0382860 | -0.804046 | 2.606910e-49 | -8.615850e-47 |
| Msa0236940 | Msa0382860 | 0.816896 | 4.365453e-52 | -8.615850e-47 |
| Msa0378310 | Msa0382860 | -0.816521 | 5.298837e-52 | -8.615850e-47 |
| Msa0382860 | Msa0414250 | -0.803838 | 2.879507e-49 | -8.615850e-47 |
| Msa0382860 | Msa0432940 | 0.991201 | 2.063361e-186 | -8.615850e-47 |
| Msa0382860 | Msa0432970 | 0.991803 | 1.247642e-189 | -8.615850e-47 |
| Msa0382860 | Msa0436840 | 0.810480 | 1.128575e-50 | -8.615850e-47 |
| Msa0382860 | Msa0474570 | 0.808139 | 3.586440e-50 | -8.615850e-47 |
| Msa0382860 | Msa0477030 | 0.990454 | 1.037818e-182 | -8.615850e-47 |
| Msa0382860 | Msa0576180 | 0.805768 | 1.137881e-49 | -8.615850e-47 |
| Msa0382860 | Msa0579170 | -0.800298 | 1.539176e-48 | -8.615850e-47 |
| Msa0382860 | Msa0579230 | -0.811395 | 7.153702e-51 | -8.615850e-47 |
| Msa0382860 | Msa0608820 | 0.805443 | 1.331903e-49 | -8.615850e-47 |
| Msa0382860 | Msa0647320 | 0.826891 | 2.114577e-54 | -8.615850e-47 |
| Msa0382860 | Msa0749150 | -0.816611 | 5.059306e-52 | -8.615850e-47 |
| Msa0382860 | Msa0792880 | -0.806866 | 6.681160e-50 | -8.615850e-47 |
| Msa0382860 | Msa0803530 | -0.820756 | 5.797355e-53 | -8.615850e-47 |
| Msa0382860 | Msa0828900 | -0.813088 | 3.055769e-51 | -8.615850e-47 |
| Msa0382860 | Msa0930210 | 0.807756 | 4.326327e-50 | -8.615850e-47 |
| Msa0382860 | Msa0931550 | -0.833149 | 6.293191e-56 | -8.615850e-47 |
| Msa0382860 | Msa0932140 | 0.800252 | 1.572305e-48 | -8.615850e-47 |
| Msa0382860 | Msa0950470 | -0.822206 | 2.681492e-53 | -8.615850e-47 |
| Msa0382860 | Msa0950570 | -0.826023 | 3.404663e-54 | -8.615850e-47 |
| Msa0382860 | Msa0967900 | -0.800764 | 1.236679e-48 | -8.615850e-47 |
| Msa0382860 | Msa1024570 | 0.821309 | 4.323362e-53 | -8.615850e-47 |
| Msa0382860 | Msa1031180 | 0.837274 | 5.724075e-57 | -8.615850e-47 |
| Msa0382860 | Msa1031530 | -0.812369 | 4.389111e-51 | -8.615850e-47 |
| Msa0382860 | Msa1070360 | 0.858247 | 9.390858e-63 | -8.615850e-47 |
| Msa0382860 | Msa1070630 | -0.803937 | 2.745972e-49 | -8.615850e-47 |
| Msa0382860 | Msa1117510 | -0.823958 | 1.046480e-53 | -8.615850e-47 |
| Msa0382860 | Msa1119430 | 0.838835 | 2.271361e-57 | -8.615850e-47 |
| Msa0382860 | Msa1125450 | -0.816007 | 6.903700e-52 | -8.615850e-47 |
| Msa0382860 | Msa1127910 | 0.805082 | 1.584576e-49 | -8.615850e-47 |
| Msa0382860 | Msa1158450 | -0.804519 | 2.077582e-49 | -8.615850e-47 |
| Msa0382860 | Msa1161210 | -0.803216 | 3.875459e-49 | -8.615850e-47 |
| Msa0382860 | Msa1164570 | -0.816639 | 4.984907e-52 | -8.615850e-47 |
| Msa0382860 | Msa1205270 | -0.808720 | 2.696433e-50 | -8.615850e-47 |
| Msa0382860 | Msa1219540 | 0.806696 | 7.257353e-50 | -8.615850e-47 |
| Msa0382860 | Msa1236860 | -0.811449 | 6.962480e-51 | -8.615850e-47 |
| Msa0382860 | Msa1297220 | -0.808328 | 3.268918e-50 | -8.615850e-47 |
| Msa0382860 | Msa1323260 | -0.817240 | 3.653996e-52 | -8.615850e-47 |
| Msa0382860 | Msa1333210 | 0.850807 | 1.337190e-60 | -8.615850e-47 |
| Msa0382860 | Msa1343450 | -0.820006 | 8.615922e-53 | -8.615850e-47 |
| Msa0382860 | Msa1371300 | 0.986104 | 1.093311e-165 | -8.615850e-47 |
| Msa0382860 | Msa1386250 | -0.813396 | 2.614418e-51 | -8.615850e-47 |
| Msa0382860 | Msa1460530 | -0.838967 | 2.099254e-57 | -8.615850e-47 |
| Msa0256540 | Msa0382860 | 0.802172 | 6.364437e-49 | -8.615850e-47 |
| Msa0275560 | Msa0382860 | 0.838791 | 2.331189e-57 | -8.615850e-47 |
| Msa0295680 | Msa0382860 | 0.842938 | 1.904967e-58 | -8.615850e-47 |
| Msa0334320 | Msa0382860 | 0.809132 | 2.201240e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382860 | MtrunA17_Chr3g0138161 | 94.543 | 678 | 36 | 1 | 1 | 677 | 1 | 678 | 0.0 | 1312 |
| Msa0382860 | MtrunA17_Chr1g0148971 | 75.851 | 646 | 147 | 3 | 3 | 642 | 19 | 661 | 0.0 | 1004 |
| Msa0382860 | MtrunA17_Chr2g0332331 | 67.884 | 657 | 201 | 5 | 4 | 654 | 11 | 663 | 0.0 | 901 |
| Msa0382860 | MtrunA17_Chr2g0332351 | 68.510 | 651 | 195 | 5 | 4 | 648 | 11 | 657 | 0.0 | 899 |
| Msa0382860 | MtrunA17_Chr2g0332471 | 68.992 | 645 | 190 | 5 | 4 | 642 | 11 | 651 | 0.0 | 897 |
| Msa0382860 | MtrunA17_Chr2g0332441 | 70.364 | 577 | 165 | 3 | 39 | 609 | 2 | 578 | 0.0 | 830 |
| Msa0382860 | MtrunA17_Chr2g0332491 | 61.972 | 639 | 160 | 4 | 4 | 642 | 11 | 566 | 0.0 | 773 |
| Msa0382860 | MtrunA17_Chr7g0270341 | 59.327 | 654 | 243 | 5 | 4 | 643 | 7 | 651 | 0.0 | 764 |
| Msa0382860 | MtrunA17_Chr2g0293661 | 57.562 | 648 | 254 | 4 | 4 | 639 | 7 | 645 | 0.0 | 763 |
| Msa0382860 | MtrunA17_Chr3g0117521 | 58.769 | 650 | 246 | 7 | 4 | 639 | 7 | 648 | 0.0 | 749 |
| Msa0382860 | MtrunA17_Chr2g0332391 | 65.805 | 348 | 113 | 3 | 172 | 513 | 1 | 348 | 5.47e-166 | 479 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382860 | AT4G32510.2 | 68.049 | 651 | 195 | 4 | 4 | 642 | 7 | 656 | 0.0 | 927 |
| Msa0382860 | AT4G32510.1 | 68.049 | 651 | 195 | 4 | 4 | 642 | 7 | 656 | 0.0 | 926 |
| Msa0382860 | AT5G25430.1 | 66.256 | 649 | 213 | 2 | 3 | 646 | 8 | 655 | 0.0 | 916 |
| Msa0382860 | AT1G15460.2 | 66.512 | 648 | 201 | 3 | 5 | 642 | 13 | 654 | 0.0 | 906 |
| Msa0382860 | AT1G15460.1 | 66.512 | 648 | 201 | 3 | 5 | 642 | 13 | 654 | 0.0 | 906 |
| Msa0382860 | AT1G74810.7 | 65.639 | 649 | 207 | 4 | 4 | 642 | 12 | 654 | 0.0 | 880 |
| Msa0382860 | AT1G74810.4 | 65.639 | 649 | 207 | 4 | 4 | 642 | 12 | 654 | 0.0 | 880 |
| Msa0382860 | AT1G74810.1 | 65.639 | 649 | 207 | 4 | 4 | 642 | 12 | 654 | 0.0 | 880 |
| Msa0382860 | AT1G15460.3 | 67.647 | 612 | 188 | 2 | 5 | 606 | 13 | 624 | 0.0 | 871 |
| Msa0382860 | AT1G74810.6 | 65.806 | 620 | 196 | 4 | 33 | 642 | 9 | 622 | 0.0 | 837 |
| Msa0382860 | AT1G74810.3 | 65.806 | 620 | 196 | 4 | 33 | 642 | 9 | 622 | 0.0 | 837 |
| Msa0382860 | AT3G62270.1 | 59.505 | 647 | 242 | 6 | 4 | 639 | 7 | 644 | 0.0 | 783 |
| Msa0382860 | AT2G47160.1 | 60.124 | 647 | 237 | 6 | 4 | 639 | 7 | 643 | 0.0 | 781 |
| Msa0382860 | AT2G47160.2 | 57.887 | 672 | 237 | 7 | 4 | 639 | 7 | 668 | 0.0 | 767 |
| Msa0382860 | AT3G06450.3 | 56.522 | 644 | 263 | 8 | 4 | 639 | 9 | 643 | 0.0 | 754 |
| Msa0382860 | AT3G06450.1 | 56.522 | 644 | 263 | 8 | 4 | 639 | 9 | 643 | 0.0 | 754 |
| Msa0382860 | AT3G06450.2 | 56.522 | 644 | 263 | 8 | 4 | 639 | 9 | 643 | 0.0 | 754 |
| Msa0382860 | AT3G06450.4 | 56.522 | 644 | 263 | 8 | 4 | 639 | 9 | 643 | 0.0 | 754 |
| Msa0382860 | AT1G15460.4 | 64.621 | 554 | 180 | 3 | 99 | 642 | 1 | 548 | 0.0 | 752 |
| Msa0382860 | AT1G74810.5 | 63.538 | 554 | 186 | 4 | 99 | 642 | 1 | 548 | 0.0 | 725 |
| Msa0382860 | AT1G74810.2 | 63.636 | 517 | 172 | 4 | 136 | 642 | 1 | 511 | 0.0 | 671 |
Find 209 sgRNAs with CRISPR-Local
Find 316 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTACCCGTGATTTATATATT+TGG | 0.189461 | 3_1:-85628820 | Msa0382860:CDS |
| AATTAAAATATAGGAAATAT+TGG | 0.193606 | 3_1:+85630711 | None:intergenic |
| CGAGGCTTTATTGCAGATTA+TGG | 0.224792 | 3_1:-85629242 | Msa0382860:CDS |
| TACCCGTGATTTATATATTT+GGG | 0.228711 | 3_1:-85628819 | Msa0382860:CDS |
| AGAATTGCAGGGGAGTTATT+TGG | 0.243689 | 3_1:-85629695 | Msa0382860:CDS |
| GGAATTATTCACTCAATTAT+AGG | 0.251240 | 3_1:-85630021 | Msa0382860:CDS |
| TAAAATTAAAATTAAAATAT+AGG | 0.263051 | 3_1:+85630702 | None:intergenic |
| CTGATTGGTTTATCGATAAT+AGG | 0.284857 | 3_1:-85627991 | Msa0382860:CDS |
| ATTATAACAGGTTAAAGAAT+TGG | 0.285654 | 3_1:-85628151 | Msa0382860:intron |
| ATGGCAATTGATAGTCTTCC+TGG | 0.286687 | 3_1:-85627913 | Msa0382860:CDS |
| CAAAGAGTTTGGCAGTTCTT+AGG | 0.288036 | 3_1:-85628494 | Msa0382860:CDS |
| GTCTTCCTGGGAATCAGTTC+TGG | 0.288459 | 3_1:-85627900 | Msa0382860:CDS |
| TTTCTTTCAAGAGGCTATAA+AGG | 0.293379 | 3_1:-85629654 | Msa0382860:intron |
| AGCTTGAAGATGATCTTCTT+TGG | 0.301502 | 3_1:-85626844 | Msa0382860:three_prime_UTR |
| TGGTTAGGCTTGAATATCTT+TGG | 0.316056 | 3_1:+85627561 | None:intergenic |
| ATTACTTGTAACGCCGGCTT+GGG | 0.319641 | 3_1:+85627851 | None:intergenic |
| ATTCTTTGCTTCCGCGCTTC+CGG | 0.321126 | 3_1:-85630127 | Msa0382860:CDS |
| TTATTGTATGGAACAAATCT+AGG | 0.322748 | 3_1:+85630753 | None:intergenic |
| TGTGTTGCAGGGTTTGTATT+TGG | 0.323843 | 3_1:-85629781 | Msa0382860:intron |
| AATTCATATGAACTTTGAAA+TGG | 0.330857 | 3_1:-85626760 | Msa0382860:three_prime_UTR |
| GCGCTTCCGGTCATTGCTTT+CGG | 0.332914 | 3_1:-85630114 | Msa0382860:CDS |
| TTACTATGATGCAGAGATAT+TGG | 0.337001 | 3_1:-85627233 | Msa0382860:CDS |
| CTTTCGGAGAACAACTTAGT+AGG | 0.339784 | 3_1:-85630098 | Msa0382860:CDS |
| GAAAGAGAATAATGGCAAAA+AGG | 0.355095 | 3_1:-85626799 | Msa0382860:three_prime_UTR |
| ATGAATGAAAACGCGTTTGA+TGG | 0.362058 | 3_1:+85630535 | None:intergenic |
| CTTGGCCTTCCTCCTTCAAA+TGG | 0.362198 | 3_1:-85628543 | Msa0382860:CDS |
| TACCAAGCTCTTTCTAGCTT+GGG | 0.365109 | 3_1:-85629905 | Msa0382860:CDS |
| CTGTTGTTCCATGCATTCCT+TGG | 0.365305 | 3_1:+85628339 | None:intergenic |
| AGTGGACAAAACAGCCTTCT+AGG | 0.365772 | 3_1:+85629149 | None:intergenic |
| AGTACCAGCTCTGAATTATA+TGG | 0.368865 | 3_1:-85628316 | Msa0382860:CDS |
| GGAACAAGAAAGGATTCAAT+TGG | 0.383575 | 3_1:-85626823 | Msa0382860:three_prime_UTR |
| ACTAGATTTACAAGAATTGC+AGG | 0.384496 | 3_1:-85629707 | Msa0382860:CDS |
| TCCCATGCATACAAAGAGTT+TGG | 0.386041 | 3_1:-85628505 | Msa0382860:CDS |
| GCAAGCTGTGTTCATTGAAA+TGG | 0.395458 | 3_1:-85628287 | Msa0382860:CDS |
| TGGGTCTGCGCAATCTGTTC+CGG | 0.400996 | 3_1:-85630260 | Msa0382860:CDS |
| ATTCAAGCCTAACCATCTTC+AGG | 0.402816 | 3_1:-85627553 | Msa0382860:CDS |
| GTACCAAGCTCTTTCTAGCT+TGG | 0.404814 | 3_1:-85629906 | Msa0382860:CDS |
| CAATCAGGAGGGACTGCAAT+AGG | 0.410300 | 3_1:+85628007 | None:intergenic |
| TAATAATAATGACAGCATAT+TGG | 0.412439 | 3_1:-85630166 | Msa0382860:intron |
| ATTAAAATATAGGAAATATT+GGG | 0.413687 | 3_1:+85630712 | None:intergenic |
| CTATTGCAGTCCCTCCTGAT+TGG | 0.417106 | 3_1:-85628006 | Msa0382860:CDS |
| TTCCAAGTGGTGTTCCTAGA+AGG | 0.420451 | 3_1:-85629163 | Msa0382860:CDS |
| GATCTTCTTTGGAACAAGAA+AGG | 0.422212 | 3_1:-85626833 | Msa0382860:three_prime_UTR |
| TTAAATGCTATAAACAAGAT+TGG | 0.422231 | 3_1:-85630280 | Msa0382860:CDS |
| TGGGTTTCAAATATATTAGT+AGG | 0.427061 | 3_1:-85626740 | Msa0382860:three_prime_UTR |
| AAAGCAAGATCATGGCGATA+TGG | 0.432577 | 3_1:-85629399 | Msa0382860:CDS |
| GATTGACACTTTAAAACAGT+TGG | 0.433116 | 3_1:+85630605 | None:intergenic |
| ATTCATATGAACTTTGAAAT+GGG | 0.437047 | 3_1:-85626759 | Msa0382860:three_prime_UTR |
| GCGCAATCTGTTCCGGCGTT+AGG | 0.439948 | 3_1:-85630253 | Msa0382860:intron |
| TTTGGCAGTTCTTAGGAGGC+AGG | 0.441887 | 3_1:-85628487 | Msa0382860:intron |
| CATTGAAATATTGAGATCAA+TGG | 0.443791 | 3_1:-85626710 | Msa0382860:three_prime_UTR |
| TGTAATGAAATCTGATACCA+AGG | 0.445347 | 3_1:-85628112 | Msa0382860:CDS |
| TGGATGAGATGACAACCAAC+AGG | 0.447214 | 3_1:-85627213 | Msa0382860:CDS |
| ACACCACTTGGAACGTCGTC+AGG | 0.447750 | 3_1:+85629173 | None:intergenic |
| ACTCTGATATGTGGTCTCCT+TGG | 0.450753 | 3_1:-85628561 | Msa0382860:CDS |
| TTGGCATCTACTGCCATTTG+TGG | 0.452678 | 3_1:-85630042 | Msa0382860:CDS |
| GTGTCTCTCTCATCTTTGAC+TGG | 0.455600 | 3_1:-85630787 | Msa0382860:five_prime_UTR |
| TGGTCATTTCCTTCCTAAGT+TGG | 0.457818 | 3_1:-85626690 | Msa0382860:three_prime_UTR |
| CTTTGTTCATTAACTCGGAC+TGG | 0.459027 | 3_1:+85628039 | None:intergenic |
| GTGAACTTCATGGCCAACTT+AGG | 0.459958 | 3_1:+85626677 | None:intergenic |
| GCAAAGAATATGTAGAAAGT+TGG | 0.461025 | 3_1:+85630141 | None:intergenic |
| AATTACTTGTAACGCCGGCT+TGG | 0.462717 | 3_1:+85627850 | None:intergenic |
| TGAGTGAATAATTCCACAAA+TGG | 0.463157 | 3_1:+85630029 | None:intergenic |
| AGATACACATGCCTCATTTG+TGG | 0.466869 | 3_1:-85627733 | Msa0382860:CDS |
| TCTGAGTATGAGGAAATTAT+CGG | 0.467463 | 3_1:-85627519 | Msa0382860:CDS |
| ACTTGATGCTTCTGAGTATG+AGG | 0.470967 | 3_1:-85627529 | Msa0382860:CDS |
| TAAGTATCTATGTATTTCTC+AGG | 0.471983 | 3_1:+85628066 | None:intergenic |
| TGCCAAACTCTTTGTATGCA+TGG | 0.474151 | 3_1:+85628503 | None:intergenic |
| AGAATTATGAGAAGGAAGAA+TGG | 0.475173 | 3_1:+85627600 | None:intergenic |
| AAGCTCTTTCTAGCTTGGGC+TGG | 0.476446 | 3_1:-85629901 | Msa0382860:CDS |
| TCTTTCTAGCTTGGGCTGGT+TGG | 0.476758 | 3_1:-85629897 | Msa0382860:intron |
| ATCCATTGGTATACCGCCAT+TGG | 0.477208 | 3_1:+85629475 | None:intergenic |
| ATTCCAGCTTTGATGATAGC+AGG | 0.478040 | 3_1:-85628790 | Msa0382860:CDS |
| ATGTATTTCTCAGGATCAAA+AGG | 0.479705 | 3_1:+85628075 | None:intergenic |
| TAAATGCTATAAACAAGATT+GGG | 0.483293 | 3_1:-85630279 | Msa0382860:CDS |
| ATAAAGAGATGCAGGTTCCC+AGG | 0.487430 | 3_1:+85629124 | None:intergenic |
| CAGAAAATATGCCAACTGTA+AGG | 0.487488 | 3_1:+85627674 | None:intergenic |
| TCTTGAATGATTCCCTCAAA+TGG | 0.488582 | 3_1:+85630317 | None:intergenic |
| CAAGTAGGAAAACATCATAA+TGG | 0.491729 | 3_1:+85628689 | None:intergenic |
| AATCCAGCTATGGTCTTGAA+TGG | 0.492132 | 3_1:+85627702 | None:intergenic |
| AGGTTTATATTATTAGAGAT+AGG | 0.494556 | 3_1:+85626391 | None:intergenic |
| CTCCTAAAATCAACAAAGGT+TGG | 0.498920 | 3_1:+85629995 | None:intergenic |
| TCTTCCTGGGAATCAGTTCT+GGG | 0.500146 | 3_1:-85627899 | Msa0382860:CDS |
| GGAACAAATCTAGGAAAATG+AGG | 0.503426 | 3_1:+85630762 | None:intergenic |
| TAGGCATCTCCGTTATCAAA+AGG | 0.509147 | 3_1:-85627972 | Msa0382860:CDS |
| GTCCAGTGATAAAGAGATGC+AGG | 0.510174 | 3_1:+85629116 | None:intergenic |
| TAACATGGGAGCACCATTTG+AGG | 0.510206 | 3_1:-85630330 | Msa0382860:exon |
| GTTAGGTTGAGGGGAAAAGA+TGG | 0.511735 | 3_1:-85626644 | Msa0382860:three_prime_UTR |
| AACATGGGAGCACCATTTGA+GGG | 0.512969 | 3_1:-85630329 | Msa0382860:CDS |
| TGTTCTGTTTCGGGGTCACA+TGG | 0.513903 | 3_1:-85627653 | Msa0382860:CDS |
| GATGCAGGTTCCCAGGGAAG+TGG | 0.514690 | 3_1:+85629131 | None:intergenic |
| TCATTCTTTGTTCATTAACT+CGG | 0.516096 | 3_1:+85628034 | None:intergenic |
| AAACCTGCTATCATCAAAGC+TGG | 0.519396 | 3_1:+85628787 | None:intergenic |
| TTTCGGAGAACAACTTAGTA+GGG | 0.520810 | 3_1:-85630097 | Msa0382860:CDS |
| AAGCATCAAGTTCCTGAAGA+TGG | 0.521659 | 3_1:+85627541 | None:intergenic |
| TAATTTCCTCTCACAGCTGA+AGG | 0.523428 | 3_1:+85630351 | None:intergenic |
| CAATTGGTGAAAGAGAATAA+TGG | 0.525184 | 3_1:-85626807 | Msa0382860:three_prime_UTR |
| GTACCATTCAAGACCATAGC+TGG | 0.525744 | 3_1:-85627705 | Msa0382860:CDS |
| CAGTACGTAGTATGTCACTC+AGG | 0.526268 | 3_1:-85627485 | Msa0382860:CDS |
| TCTACAAACTGCAGGATATG+TGG | 0.526801 | 3_1:-85628846 | Msa0382860:intron |
| AACCTGCATCTCTTTATCAC+TGG | 0.527373 | 3_1:-85629118 | Msa0382860:CDS |
| GTCCACAACACTACCATCAC+TGG | 0.527804 | 3_1:+85629215 | None:intergenic |
| AGGTTCCATTGCACAACCCT+TGG | 0.529505 | 3_1:+85628095 | None:intergenic |
| TCAAGTTCCTGAAGATGGTT+AGG | 0.529736 | 3_1:+85627546 | None:intergenic |
| CTATTATCGATAAACCAATC+AGG | 0.530355 | 3_1:+85627992 | None:intergenic |
| TGCCCCAAATATATAAATCA+CGG | 0.532143 | 3_1:+85628816 | None:intergenic |
| GCCAAACTCTTTGTATGCAT+GGG | 0.535179 | 3_1:+85628504 | None:intergenic |
| AAGTTTCAACTCTCCCCTGT+TGG | 0.535774 | 3_1:+85627198 | None:intergenic |
| ATTTGCAGCTGATCCGAAAG+AGG | 0.538031 | 3_1:-85628375 | Msa0382860:intron |
| CTTTCCCAGAACTGATTCCC+AGG | 0.538850 | 3_1:+85627895 | None:intergenic |
| GTGTATACAGCAAAAGAAAA+CGG | 0.540706 | 3_1:+85630664 | None:intergenic |
| GTACTAGGGCAGATTTGACC+TGG | 0.541341 | 3_1:-85626973 | Msa0382860:intron |
| TGTGGAAGGACTCCATTTGA+AGG | 0.542425 | 3_1:+85628531 | None:intergenic |
| AGCCCAAGCTAGAAAGAGCT+TGG | 0.543809 | 3_1:+85629903 | None:intergenic |
| AATTGTATCATCCTCTGAAG+AGG | 0.544738 | 3_1:-85626898 | Msa0382860:CDS |
| TTCCAGTGATGGTAGTGTTG+TGG | 0.547605 | 3_1:-85629217 | Msa0382860:CDS |
| TAAGTGTACATTATAACAGT+TGG | 0.548681 | 3_1:+85629964 | None:intergenic |
| TCCTCTTCGTCACCCCAAGC+CGG | 0.550263 | 3_1:-85627864 | Msa0382860:CDS |
| GCCCCAAATATATAAATCAC+GGG | 0.551841 | 3_1:+85628817 | None:intergenic |
| ACCCGTGATTTATATATTTG+GGG | 0.552067 | 3_1:-85628818 | Msa0382860:CDS |
| TTCCAATGGCGGTATACCAA+TGG | 0.553783 | 3_1:-85629477 | Msa0382860:CDS |
| TCATAGCGTGGCTTCTCAGA+TGG | 0.555026 | 3_1:-85628752 | Msa0382860:CDS |
| TAGGAAAACATCATAATGGT+AGG | 0.556385 | 3_1:+85628693 | None:intergenic |
| AGAGTTTGGCAGTTCTTAGG+AGG | 0.556567 | 3_1:-85628491 | Msa0382860:CDS |
| AGCCTTCTAGGAACACCACT+TGG | 0.556893 | 3_1:+85629161 | None:intergenic |
| TAGGCTTGAATATCTTTGGA+AGG | 0.557117 | 3_1:+85627565 | None:intergenic |
| AAAGCAGAAAAGCAAGATCA+TGG | 0.557963 | 3_1:-85629407 | Msa0382860:CDS |
| AATGACTGCGAGTAATCCAT+TGG | 0.562499 | 3_1:+85629461 | None:intergenic |
| GACATACTACGTACTGCAGA+TGG | 0.563507 | 3_1:+85627492 | None:intergenic |
| TGGATTTACAGCCTTACAGT+TGG | 0.564075 | 3_1:-85627685 | Msa0382860:CDS |
| CCACGTGATAGTGATAATGA+TGG | 0.565884 | 3_1:-85627268 | Msa0382860:CDS |
| ATGAGAAGGAAGAATGGTAG+CGG | 0.566015 | 3_1:+85627606 | None:intergenic |
| AATTGCAATTCCTCCGACGA+AGG | 0.567377 | 3_1:+85629498 | None:intergenic |
| TTGCAGGGTTTGTATTTGGA+CGG | 0.567947 | 3_1:-85629777 | Msa0382860:intron |
| CTGGGAATCAGTTCTGGGAA+AGG | 0.571040 | 3_1:-85627894 | Msa0382860:CDS |
| CTTGAGCACTGTAGAAACAT+TGG | 0.571302 | 3_1:-85630061 | Msa0382860:CDS |
| GAACAAATCTAGGAAAATGA+GGG | 0.575461 | 3_1:+85630763 | None:intergenic |
| TGATACCAAGGGTTGTGCAA+TGG | 0.575807 | 3_1:-85628100 | Msa0382860:CDS |
| TGGTACTGTCTCCACAAATG+AGG | 0.576656 | 3_1:+85627722 | None:intergenic |
| CAGGAGGGACTGCAATAGGT+TGG | 0.576763 | 3_1:+85628011 | None:intergenic |
| CTAATATAGTAACAATGAAG+TGG | 0.577191 | 3_1:+85630471 | None:intergenic |
| TTTCCTCCTTCAGCTGTGAG+AGG | 0.577820 | 3_1:-85630357 | Msa0382860:five_prime_UTR |
| AATATTCAGACAGCACCTCC+AGG | 0.578164 | 3_1:+85626955 | None:intergenic |
| AAAGATGGTACGAGAGTGAA+AGG | 0.579697 | 3_1:-85626629 | Msa0382860:three_prime_UTR |
| GGAATCATTCAAGATGTCAA+AGG | 0.583983 | 3_1:-85630308 | Msa0382860:CDS |
| TATCCCCATAAAACCGAGGT+AGG | 0.584080 | 3_1:+85627946 | None:intergenic |
| AGATTATGGTGTTCCAGTGA+TGG | 0.584710 | 3_1:-85629228 | Msa0382860:CDS |
| CGGAGGAATTGCAATTCCAA+TGG | 0.585619 | 3_1:-85629491 | Msa0382860:CDS |
| ACATCATAATGGTAGGCAGA+TGG | 0.586423 | 3_1:+85628700 | None:intergenic |
| GCCGGCTTGGGGTGACGAAG+AGG | 0.586471 | 3_1:+85627863 | None:intergenic |
| GGACTCCATTTGAAGGAGGA+AGG | 0.587102 | 3_1:+85628538 | None:intergenic |
| ATGTAATAATGTGTAAAGAG+AGG | 0.587989 | 3_1:+85630446 | None:intergenic |
| CTAGATTTACAAGAATTGCA+GGG | 0.588173 | 3_1:-85629706 | Msa0382860:CDS |
| AGTCTTTAGACTCTGATATG+TGG | 0.592532 | 3_1:-85628570 | Msa0382860:intron |
| ACTTCATGGCCAACTTAGGA+AGG | 0.593342 | 3_1:+85626681 | None:intergenic |
| TGGCAATTGATAGTCTTCCT+GGG | 0.593727 | 3_1:-85627912 | Msa0382860:CDS |
| GAAAAGCGCCAAGGAATGCA+TGG | 0.594390 | 3_1:-85628347 | Msa0382860:CDS |
| TTTGCAGCTGATCCGAAAGA+GGG | 0.595342 | 3_1:-85628374 | Msa0382860:intron |
| TAAGGCTGTAAATCCAGCTA+TGG | 0.595564 | 3_1:+85627692 | None:intergenic |
| TAGTGATAATGATGGAAGCT+CGG | 0.596596 | 3_1:-85627260 | Msa0382860:CDS |
| TGTTCTCCGAAAGCAATGAC+CGG | 0.597888 | 3_1:+85630108 | None:intergenic |
| TACTCAATTACTTGTAACGC+CGG | 0.600590 | 3_1:+85627845 | None:intergenic |
| TTTCCTCTCACAGCTGAAGG+AGG | 0.600917 | 3_1:+85630354 | None:intergenic |
| GCTTGAATATCTTTGGAAGG+AGG | 0.601711 | 3_1:+85627568 | None:intergenic |
| AAGAGCTTGGTACCCAGTTG+AGG | 0.604187 | 3_1:+85629916 | None:intergenic |
| AGGCGAGTTCAGCACTCCCA+AGG | 0.604329 | 3_1:-85629529 | Msa0382860:CDS |
| TTTGAACCACAGGGACTGGT+AGG | 0.604416 | 3_1:-85629549 | Msa0382860:intron |
| GGAAACAATATTCCACCTAT+CGG | 0.607030 | 3_1:+85627627 | None:intergenic |
| ATTATTCACTCAATTATAGG+TGG | 0.609337 | 3_1:-85630018 | Msa0382860:CDS |
| CAAGGTTGAAAATCCTTCGT+CGG | 0.611167 | 3_1:-85629511 | Msa0382860:CDS |
| TGAATTAAATTACCTAACGC+CGG | 0.611783 | 3_1:+85630241 | None:intergenic |
| GGATGAGATGACAACCAACA+GGG | 0.624263 | 3_1:-85627212 | Msa0382860:CDS |
| TAAAGAGATGCAGGTTCCCA+GGG | 0.625123 | 3_1:+85629125 | None:intergenic |
| GTTCTCTGAGAATTATGAGA+AGG | 0.627074 | 3_1:+85627592 | None:intergenic |
| TTATCACTGGACAGTAGTGA+AGG | 0.627297 | 3_1:-85629105 | Msa0382860:intron |
| GCTGTGAGAGGAAATTAACA+TGG | 0.632114 | 3_1:-85630345 | Msa0382860:exon |
| CAACTTAGTAGGGATACAGA+TGG | 0.633505 | 3_1:-85630087 | Msa0382860:CDS |
| TAGATTTACAAGAATTGCAG+GGG | 0.635506 | 3_1:-85629705 | Msa0382860:CDS |
| GTGAGAGCAGTCCTCTTCAG+AGG | 0.639145 | 3_1:+85626887 | None:intergenic |
| GGTTGAAAATCCTTCGTCGG+AGG | 0.639194 | 3_1:-85629508 | Msa0382860:CDS |
| GGGGTCACATGGATACCGAT+AGG | 0.640094 | 3_1:-85627642 | Msa0382860:CDS |
| TTTGTATGCATGGGAGACTG+TGG | 0.640494 | 3_1:+85628513 | None:intergenic |
| TTCAATTCAGGGAGGCTACG+AGG | 0.640834 | 3_1:-85629260 | Msa0382860:intron |
| TATCAAAAGGATACCTACCT+CGG | 0.648218 | 3_1:-85627959 | Msa0382860:CDS |
| TTATCGATAAACCAATCAGG+AGG | 0.649930 | 3_1:+85627995 | None:intergenic |
| TTACTTGTAACGCCGGCTTG+GGG | 0.651277 | 3_1:+85627852 | None:intergenic |
| CAAACTGCAGGATATGTGGA+AGG | 0.653071 | 3_1:-85628842 | Msa0382860:intron |
| GCAACTCCTAAAATCAACAA+AGG | 0.653603 | 3_1:+85629991 | None:intergenic |
| GAAAGCAATGACCGGAAGCG+CGG | 0.656263 | 3_1:+85630116 | None:intergenic |
| CATTTGAAGGAGGAAGGCCA+AGG | 0.657670 | 3_1:+85628544 | None:intergenic |
| GTCACATGGATACCGATAGG+TGG | 0.659868 | 3_1:-85627639 | Msa0382860:CDS |
| AACAGACCATTATTCCAAGT+AGG | 0.662683 | 3_1:+85628674 | None:intergenic |
| TATCGATAAACCAATCAGGA+GGG | 0.666981 | 3_1:+85627996 | None:intergenic |
| ATGCCTGACGACGTTCCAAG+TGG | 0.671559 | 3_1:-85629176 | Msa0382860:CDS |
| AGGAATTGCAATTCCAATGG+CGG | 0.673504 | 3_1:-85629488 | Msa0382860:CDS |
| AGTACGTAGTATGTCACTCA+GGG | 0.676575 | 3_1:-85627484 | Msa0382860:intron |
| GGAAGGACTCCATTTGAAGG+AGG | 0.676893 | 3_1:+85628534 | None:intergenic |
| TATGCATGGGAGACTGTGGA+AGG | 0.677272 | 3_1:+85628517 | None:intergenic |
| GTAATGAAATCTGATACCAA+GGG | 0.682765 | 3_1:-85628111 | Msa0382860:CDS |
| CTGTGAGAGGAAATTAACAT+GGG | 0.686817 | 3_1:-85630344 | Msa0382860:exon |
| CTAGGGCAGATTTGACCTGG+AGG | 0.687491 | 3_1:-85626970 | Msa0382860:intron |
| AAAATATCCCCATAAAACCG+AGG | 0.688473 | 3_1:+85627942 | None:intergenic |
| GAGGGTTGTGAAAAGCGCCA+AGG | 0.688617 | 3_1:-85628356 | Msa0382860:CDS |
| CCTAACAATACATACAGTAG+GGG | 0.689459 | 3_1:+85628258 | None:intergenic |
| GGTACGAGAGTGAAAGGACA+AGG | 0.690185 | 3_1:-85626623 | Msa0382860:three_prime_UTR |
| CCATCATTATCACTATCACG+TGG | 0.692316 | 3_1:+85627268 | None:intergenic |
| AGTGACGTTTGTGAATACTC+AGG | 0.702970 | 3_1:+85626435 | None:intergenic |
| CGTTTGTGAATACTCAGGTG+TGG | 0.711020 | 3_1:+85626440 | None:intergenic |
| GATGAGATGACAACCAACAG+GGG | 0.715278 | 3_1:-85627211 | Msa0382860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTAAAATTAAAATAT+AGG | + | chr3_1:85626509-85626528 | None:intergenic | 0.0% |
| !! | ATTAAAATATAGGAAATATT+GGG | + | chr3_1:85626499-85626518 | None:intergenic | 10.0% |
| !! | AATTAAAATATAGGAAATAT+TGG | + | chr3_1:85626500-85626519 | None:intergenic | 10.0% |
| !!! | TAAATGCTTAAATATATTTT+TGG | + | chr3_1:85629845-85629864 | None:intergenic | 10.0% |
| !!! | AATAATTGTGTTTTATTGTA+TGG | + | chr3_1:85626470-85626489 | None:intergenic | 15.0% |
| !! | ATTCTTTAAATTTCTGTTTA+AGG | - | chr3_1:85627353-85627372 | Msa0382860:intron | 15.0% |
| !! | TTCTTTAAATTTCTGTTTAA+GGG | - | chr3_1:85627354-85627373 | Msa0382860:intron | 15.0% |
| !! | AAATACATTGTGTATTTAAT+TGG | - | chr3_1:85627615-85627634 | Msa0382860:CDS | 15.0% |
| !! | CAAAAAAAAAAAATTGCTTA+AGG | + | chr3_1:85627874-85627893 | None:intergenic | 15.0% |
| !!! | CTTAAGCAATTTTTTTTTTT+TGG | - | chr3_1:85627872-85627891 | Msa0382860:CDS | 15.0% |
| !!! | TCTGAATATTACAATTTTTT+AGG | - | chr3_1:85630266-85630285 | Msa0382860:CDS | 15.0% |
| !! | AAAAAACTTTATTGGTATTA+TGG | + | chr3_1:85630708-85630727 | None:intergenic | 15.0% |
| !! | TTAAATGCTATAAACAAGAT+TGG | - | chr3_1:85626928-85626947 | Msa0382860:CDS | 20.0% |
| !! | TAAATGCTATAAACAAGATT+GGG | - | chr3_1:85626929-85626948 | Msa0382860:CDS | 20.0% |
| !! | TAATAATAATGACAGCATAT+TGG | - | chr3_1:85627042-85627061 | Msa0382860:intron | 20.0% |
| !!! | TTCTTATTTTTGTTAGAAAG+AGG | + | chr3_1:85627596-85627615 | None:intergenic | 20.0% |
| !!! | TGTATAAAAAGAAAGCATTT+TGG | + | chr3_1:85628166-85628185 | None:intergenic | 20.0% |
| !! | ATAACATAAATCCAAATTCT+AGG | + | chr3_1:85628573-85628592 | None:intergenic | 20.0% |
| !!! | GTTGGTTTTTAAATTATAAC+AGG | - | chr3_1:85629045-85629064 | Msa0382860:intron | 20.0% |
| !! | ATTATAACAGGTTAAAGAAT+TGG | - | chr3_1:85629057-85629076 | Msa0382860:intron | 20.0% |
| !! | CTACATTGAAAAAAAAGTTT+AGG | + | chr3_1:85629397-85629416 | None:intergenic | 20.0% |
| !! | ATGAATCTTAAAACTTAAGA+GGG | + | chr3_1:85630171-85630190 | None:intergenic | 20.0% |
| !! | AATGAATCTTAAAACTTAAG+AGG | + | chr3_1:85630172-85630191 | None:intergenic | 20.0% |
| !!! | AATTCATATGAACTTTGAAA+TGG | - | chr3_1:85630448-85630467 | Msa0382860:five_prime_UTR | 20.0% |
| !!! | ATTCATATGAACTTTGAAAT+GGG | - | chr3_1:85630449-85630468 | Msa0382860:five_prime_UTR | 20.0% |
| !!! | GTTAAGAATTTTTTTTCTGT+TGG | - | chr3_1:85630675-85630694 | Msa0382860:five_prime_UTR | 20.0% |
| ! | TTATTGTATGGAACAAATCT+AGG | + | chr3_1:85626458-85626477 | None:intergenic | 25.0% |
| ! | CTAATATAGTAACAATGAAG+TGG | + | chr3_1:85626740-85626759 | None:intergenic | 25.0% |
| ! | ATGTAATAATGTGTAAAGAG+AGG | + | chr3_1:85626765-85626784 | None:intergenic | 25.0% |
| ! | GGAATTATTCACTCAATTAT+AGG | - | chr3_1:85627187-85627206 | Msa0382860:intron | 25.0% |
| ! | ATTATTCACTCAATTATAGG+TGG | - | chr3_1:85627190-85627209 | Msa0382860:intron | 25.0% |
| ! | TAAGTGTACATTATAACAGT+TGG | + | chr3_1:85627247-85627266 | None:intergenic | 25.0% |
| ! | AATGCAAGAATAAAGATCAT+TGG | + | chr3_1:85627929-85627948 | None:intergenic | 25.0% |
| ! | TTATTCTTGCATTTCAATTC+AGG | - | chr3_1:85627936-85627955 | Msa0382860:CDS | 25.0% |
| ! | TATTCTTGCATTTCAATTCA+GGG | - | chr3_1:85627937-85627956 | Msa0382860:CDS | 25.0% |
| ! | ACACCTTGAATATTAAGTAT+TGG | + | chr3_1:85628243-85628262 | None:intergenic | 25.0% |
| !!! | AGTCGTGATCATTTTAATTT+AGG | - | chr3_1:85628307-85628326 | Msa0382860:CDS | 25.0% |
| ! | GTTAGACTTATATGGATATT+AGG | + | chr3_1:85628338-85628357 | None:intergenic | 25.0% |
| ! | TACCCGTGATTTATATATTT+GGG | - | chr3_1:85628389-85628408 | Msa0382860:intron | 25.0% |
| !!! | TTTGTTTTCTTCCTAGAATT+TGG | - | chr3_1:85628559-85628578 | Msa0382860:CDS | 25.0% |
| ! | GATTGACATAATTATCTCTA+TGG | - | chr3_1:85628613-85628632 | Msa0382860:intron | 25.0% |
| ! | TAAGTATCTATGTATTTCTC+AGG | + | chr3_1:85629145-85629164 | None:intergenic | 25.0% |
| ! | TCATTCTTTGTTCATTAACT+CGG | + | chr3_1:85629177-85629196 | None:intergenic | 25.0% |
| !!! | AATTTTTTAGGATGCAGAAA+AGG | - | chr3_1:85630278-85630297 | Msa0382860:CDS | 25.0% |
| ! | TGGGTTTCAAATATATTAGT+AGG | - | chr3_1:85630468-85630487 | Msa0382860:five_prime_UTR | 25.0% |
| ! | CATTGAAATATTGAGATCAA+TGG | - | chr3_1:85630498-85630517 | Msa0382860:five_prime_UTR | 25.0% |
| !!! | TACCAATAAAGTTTTTTGAG+AGG | - | chr3_1:85630711-85630730 | Msa0382860:five_prime_UTR | 25.0% |
| ! | ATCCTCTCAAAAAACTTTAT+TGG | + | chr3_1:85630716-85630735 | None:intergenic | 25.0% |
| GAACAAATCTAGGAAAATGA+GGG | + | chr3_1:85626448-85626467 | None:intergenic | 30.0% | |
| GTGTATACAGCAAAAGAAAA+CGG | + | chr3_1:85626547-85626566 | None:intergenic | 30.0% | |
| !! | GATTGACACTTTAAAACAGT+TGG | + | chr3_1:85626606-85626625 | None:intergenic | 30.0% |
| ATGGAGAATTGACAGAAAAA+AGG | + | chr3_1:85626657-85626676 | None:intergenic | 30.0% | |
| TGAATTAAATTACCTAACGC+CGG | + | chr3_1:85626970-85626989 | None:intergenic | 30.0% | |
| GCAAAGAATATGTAGAAAGT+TGG | + | chr3_1:85627070-85627089 | None:intergenic | 30.0% | |
| TGAGTGAATAATTCCACAAA+TGG | + | chr3_1:85627182-85627201 | None:intergenic | 30.0% | |
| ! | ACGAACATTTTAGATCGATA+CGG | + | chr3_1:85627404-85627423 | None:intergenic | 30.0% |
| ACTAGATTTACAAGAATTGC+AGG | - | chr3_1:85627501-85627520 | Msa0382860:CDS | 30.0% | |
| CTAGATTTACAAGAATTGCA+GGG | - | chr3_1:85627502-85627521 | Msa0382860:CDS | 30.0% | |
| TAGATTTACAAGAATTGCAG+GGG | - | chr3_1:85627503-85627522 | Msa0382860:CDS | 30.0% | |
| TTTCTTTCAAGAGGCTATAA+AGG | - | chr3_1:85627554-85627573 | Msa0382860:CDS | 30.0% | |
| ACAAAAATTGTTTGAACCAC+AGG | - | chr3_1:85627649-85627668 | Msa0382860:CDS | 30.0% | |
| CAAAAATTGTTTGAACCACA+GGG | - | chr3_1:85627650-85627669 | Msa0382860:CDS | 30.0% | |
| !!! | TCGCAGTCATTTTTTCTTTT+GGG | - | chr3_1:85627759-85627778 | Msa0382860:intron | 30.0% |
| !! | CTAATGTGGTATTGGATTTT+TGG | + | chr3_1:85627850-85627869 | None:intergenic | 30.0% |
| AAATTGCTTAAGGTCTAATG+TGG | + | chr3_1:85627864-85627883 | None:intergenic | 30.0% | |
| TAAAGATCATTGGAGTGATA+AGG | + | chr3_1:85627919-85627938 | None:intergenic | 30.0% | |
| GCACCAATACTTAATATTCA+AGG | - | chr3_1:85628237-85628256 | Msa0382860:intron | 30.0% | |
| TAGAAGCTGTTAGACTTATA+TGG | + | chr3_1:85628346-85628365 | None:intergenic | 30.0% | |
| GTACCCGTGATTTATATATT+TGG | - | chr3_1:85628388-85628407 | Msa0382860:intron | 30.0% | |
| ACCCGTGATTTATATATTTG+GGG | - | chr3_1:85628390-85628409 | Msa0382860:intron | 30.0% | |
| TGCCCCAAATATATAAATCA+CGG | + | chr3_1:85628395-85628414 | None:intergenic | 30.0% | |
| TAGGAAAACATCATAATGGT+AGG | + | chr3_1:85628518-85628537 | None:intergenic | 30.0% | |
| CAAGTAGGAAAACATCATAA+TGG | + | chr3_1:85628522-85628541 | None:intergenic | 30.0% | |
| ! | CATTATGATGTTTTCCTACT+TGG | - | chr3_1:85628520-85628539 | Msa0382860:CDS | 30.0% |
| ! | TGTTTTCCTACTTGGAATAA+TGG | - | chr3_1:85628528-85628547 | Msa0382860:CDS | 30.0% |
| ! | CATCGATATATTTTGCATCA+AGG | - | chr3_1:85628748-85628767 | Msa0382860:CDS | 30.0% |
| TTGAGAAGAAATTAAGAACC+AGG | + | chr3_1:85628776-85628795 | None:intergenic | 30.0% | |
| ! | TTTTCCATATAATTCAGAGC+TGG | + | chr3_1:85628899-85628918 | None:intergenic | 30.0% |
| ACCTAACAATACATACAGTA+GGG | + | chr3_1:85628954-85628973 | None:intergenic | 30.0% | |
| AACCTAACAATACATACAGT+AGG | + | chr3_1:85628955-85628974 | None:intergenic | 30.0% | |
| GATACTAATACACATAGTGT+TGG | - | chr3_1:85629027-85629046 | Msa0382860:intron | 30.0% | |
| TGTAATGAAATCTGATACCA+AGG | - | chr3_1:85629096-85629115 | Msa0382860:intron | 30.0% | |
| GTAATGAAATCTGATACCAA+GGG | - | chr3_1:85629097-85629116 | Msa0382860:intron | 30.0% | |
| ATGTATTTCTCAGGATCAAA+AGG | + | chr3_1:85629136-85629155 | None:intergenic | 30.0% | |
| CTATTATCGATAAACCAATC+AGG | + | chr3_1:85629219-85629238 | None:intergenic | 30.0% | |
| !! | CTGATTGGTTTATCGATAAT+AGG | - | chr3_1:85629217-85629236 | Msa0382860:CDS | 30.0% |
| GAAAAAAAAGTTTAGGCACA+AGG | + | chr3_1:85629390-85629409 | None:intergenic | 30.0% | |
| ! | TGTCATTGTCTTGTATGTTT+TGG | - | chr3_1:85629439-85629458 | Msa0382860:CDS | 30.0% |
| ! | GTCATTGTCTTGTATGTTTT+GGG | - | chr3_1:85629440-85629459 | Msa0382860:CDS | 30.0% |
| ! | GCATATTTTCTGTTCTGTTT+CGG | - | chr3_1:85629545-85629564 | Msa0382860:intron | 30.0% |
| ! | CATATTTTCTGTTCTGTTTC+GGG | - | chr3_1:85629546-85629565 | Msa0382860:intron | 30.0% |
| ! | ATATTTTCTGTTCTGTTTCG+GGG | - | chr3_1:85629547-85629566 | Msa0382860:intron | 30.0% |
| AGAATTATGAGAAGGAAGAA+TGG | + | chr3_1:85629611-85629630 | None:intergenic | 30.0% | |
| TCTGAGTATGAGGAAATTAT+CGG | - | chr3_1:85629689-85629708 | Msa0382860:CDS | 30.0% | |
| TCCAACTTAGGATTTGAATT+TGG | - | chr3_1:85629900-85629919 | Msa0382860:CDS | 30.0% | |
| ACCAAATTCAAATCCTAAGT+TGG | + | chr3_1:85629904-85629923 | None:intergenic | 30.0% | |
| TTACTATGATGCAGAGATAT+TGG | - | chr3_1:85629975-85629994 | Msa0382860:CDS | 30.0% | |
| ! | TTATGCTTGTGTTTTGTACT+AGG | - | chr3_1:85630220-85630239 | Msa0382860:intron | 30.0% |
| ! | TATGCTTGTGTTTTGTACTA+GGG | - | chr3_1:85630221-85630240 | Msa0382860:intron | 30.0% |
| CAATTGGTGAAAGAGAATAA+TGG | - | chr3_1:85630401-85630420 | Msa0382860:five_prime_UTR | 30.0% | |
| GAAAGAGAATAATGGCAAAA+AGG | - | chr3_1:85630409-85630428 | Msa0382860:five_prime_UTR | 30.0% | |
| !!! | TCCTTTTTTTGTGAACTTCA+TGG | + | chr3_1:85630544-85630563 | None:intergenic | 30.0% |
| AGTTCACAAAAAAAGGAGTT+AGG | - | chr3_1:85630547-85630566 | Msa0382860:five_prime_UTR | 30.0% | |
| !! | AAAAAAAGGAGTTAGGTTGA+GGG | - | chr3_1:85630554-85630573 | Msa0382860:five_prime_UTR | 30.0% |
| GGACAAGGAAAAAAAAAAGA+CGG | - | chr3_1:85630600-85630619 | Msa0382860:five_prime_UTR | 30.0% | |
| GACAAGGAAAAAAAAAAGAC+GGG | - | chr3_1:85630601-85630620 | Msa0382860:five_prime_UTR | 30.0% | |
| ACAAGGAAAAAAAAAAGACG+GGG | - | chr3_1:85630602-85630621 | Msa0382860:five_prime_UTR | 30.0% | |
| GGAACAAATCTAGGAAAATG+AGG | + | chr3_1:85626449-85626468 | None:intergenic | 35.0% | |
| ATGAATGAAAACGCGTTTGA+TGG | + | chr3_1:85626676-85626695 | None:intergenic | 35.0% | |
| CTGTGAGAGGAAATTAACAT+GGG | - | chr3_1:85626864-85626883 | Msa0382860:exon | 35.0% | |
| TCTTGAATGATTCCCTCAAA+TGG | + | chr3_1:85626894-85626913 | None:intergenic | 35.0% | |
| GGAATCATTCAAGATGTCAA+AGG | - | chr3_1:85626900-85626919 | Msa0382860:CDS | 35.0% | |
| TTTCGGAGAACAACTTAGTA+GGG | - | chr3_1:85627111-85627130 | Msa0382860:intron | 35.0% | |
| CTCCTAAAATCAACAAAGGT+TGG | + | chr3_1:85627216-85627235 | None:intergenic | 35.0% | |
| GCAACTCCTAAAATCAACAA+AGG | + | chr3_1:85627220-85627239 | None:intergenic | 35.0% | |
| TGCAAAAATACACCTCAACT+GGG | - | chr3_1:85627280-85627299 | Msa0382860:CDS | 35.0% | |
| AATGTTCGTATTTGTGTTGC+AGG | - | chr3_1:85627415-85627434 | Msa0382860:intron | 35.0% | |
| ATGTTCGTATTTGTGTTGCA+GGG | - | chr3_1:85627416-85627435 | Msa0382860:intron | 35.0% | |
| ! | CACTGTTCTTTTCTTTCAAG+AGG | - | chr3_1:85627545-85627564 | Msa0382860:CDS | 35.0% |
| !!! | CTCGCAGTCATTTTTTCTTT+TGG | - | chr3_1:85627758-85627777 | Msa0382860:intron | 35.0% |
| AAAGCAGAAAAGCAAGATCA+TGG | - | chr3_1:85627801-85627820 | Msa0382860:intron | 35.0% | |
| CTTAAGGTCTAATGTGGTAT+TGG | + | chr3_1:85627858-85627877 | None:intergenic | 35.0% | |
| CTCTACAGACATACATTACA+TGG | + | chr3_1:85628218-85628237 | None:intergenic | 35.0% | |
| GCCCCAAATATATAAATCAC+GGG | + | chr3_1:85628394-85628413 | None:intergenic | 35.0% | |
| !!! | ATACTTTTTCGATCATAGCG+TGG | - | chr3_1:85628444-85628463 | Msa0382860:intron | 35.0% |
| AACAGACCATTATTCCAAGT+AGG | + | chr3_1:85628537-85628556 | None:intergenic | 35.0% | |
| AGTCTTTAGACTCTGATATG+TGG | - | chr3_1:85628638-85628657 | Msa0382860:intron | 35.0% | |
| !! | AGTACCAGCTCTGAATTATA+TGG | - | chr3_1:85628892-85628911 | Msa0382860:intron | 35.0% |
| CCTAACAATACATACAGTAG+GGG | + | chr3_1:85628953-85628972 | None:intergenic | 35.0% | |
| TATCGATAAACCAATCAGGA+GGG | + | chr3_1:85629215-85629234 | None:intergenic | 35.0% | |
| TTATCGATAAACCAATCAGG+AGG | + | chr3_1:85629216-85629235 | None:intergenic | 35.0% | |
| ! | GGTAGGTATCCTTTTGATAA+CGG | + | chr3_1:85629248-85629267 | None:intergenic | 35.0% |
| TATCAAAAGGATACCTACCT+CGG | - | chr3_1:85629249-85629268 | Msa0382860:CDS | 35.0% | |
| AAAATATCCCCATAAAACCG+AGG | + | chr3_1:85629269-85629288 | None:intergenic | 35.0% | |
| ! | ATGGGGATATTTTGCTTACA+TGG | - | chr3_1:85629276-85629295 | Msa0382860:intron | 35.0% |
| TACTCAATTACTTGTAACGC+CGG | + | chr3_1:85629366-85629385 | None:intergenic | 35.0% | |
| CAGAAAATATGCCAACTGTA+AGG | + | chr3_1:85629537-85629556 | None:intergenic | 35.0% | |
| GGAAACAATATTCCACCTAT+CGG | + | chr3_1:85629584-85629603 | None:intergenic | 35.0% | |
| ! | GTTCTCTGAGAATTATGAGA+AGG | + | chr3_1:85629619-85629638 | None:intergenic | 35.0% |
| TAGGCTTGAATATCTTTGGA+AGG | + | chr3_1:85629646-85629665 | None:intergenic | 35.0% | |
| TGGTTAGGCTTGAATATCTT+TGG | + | chr3_1:85629650-85629669 | None:intergenic | 35.0% | |
| ! | AAATCCTAAGTTGGAAAGCT+TGG | + | chr3_1:85629895-85629914 | None:intergenic | 35.0% |
| GGATTTGAATTTGGTTGATC+AGG | - | chr3_1:85629909-85629928 | Msa0382860:CDS | 35.0% | |
| TGAATTTGGTTGATCAGGAT+AGG | - | chr3_1:85629914-85629933 | Msa0382860:CDS | 35.0% | |
| GAATTTGGTTGATCAGGATA+GGG | - | chr3_1:85629915-85629934 | Msa0382860:CDS | 35.0% | |
| ! | TAGTGATAATGATGGAAGCT+CGG | - | chr3_1:85629948-85629967 | Msa0382860:CDS | 35.0% |
| ! | AATTGTATCATCCTCTGAAG+AGG | - | chr3_1:85630310-85630329 | Msa0382860:CDS | 35.0% |
| AGCTTGAAGATGATCTTCTT+TGG | - | chr3_1:85630364-85630383 | Msa0382860:five_prime_UTR | 35.0% | |
| !! | GATCTTCTTTGGAACAAGAA+AGG | - | chr3_1:85630375-85630394 | Msa0382860:five_prime_UTR | 35.0% |
| GGAACAAGAAAGGATTCAAT+TGG | - | chr3_1:85630385-85630404 | Msa0382860:five_prime_UTR | 35.0% | |
| GGCAAAAAGGAACAAAGATA+TGG | - | chr3_1:85630422-85630441 | Msa0382860:five_prime_UTR | 35.0% | |
| GCCATGAAGTTCACAAAAAA+AGG | - | chr3_1:85630540-85630559 | Msa0382860:five_prime_UTR | 35.0% | |
| ! | CAAAAAAAGGAGTTAGGTTG+AGG | - | chr3_1:85630553-85630572 | Msa0382860:five_prime_UTR | 35.0% |
| !! | AAAAAAGGAGTTAGGTTGAG+GGG | - | chr3_1:85630555-85630574 | Msa0382860:five_prime_UTR | 35.0% |
| CAAGGAAAAAAAAAAGACGG+GGG | - | chr3_1:85630603-85630622 | Msa0382860:five_prime_UTR | 35.0% | |
| TAATTTCCTCTCACAGCTGA+AGG | + | chr3_1:85626860-85626879 | None:intergenic | 40.0% | |
| GCTGTGAGAGGAAATTAACA+TGG | - | chr3_1:85626863-85626882 | Msa0382860:exon | 40.0% | |
| CTTTCGGAGAACAACTTAGT+AGG | - | chr3_1:85627110-85627129 | Msa0382860:intron | 40.0% | |
| CAACTTAGTAGGGATACAGA+TGG | - | chr3_1:85627121-85627140 | Msa0382860:intron | 40.0% | |
| ! | CTTGAGCACTGTAGAAACAT+TGG | - | chr3_1:85627147-85627166 | Msa0382860:intron | 40.0% |
| !!! | GGCCAACCTTTGTTGATTTT+AGG | - | chr3_1:85627211-85627230 | Msa0382860:CDS | 40.0% |
| CTGCAAAAATACACCTCAAC+TGG | - | chr3_1:85627279-85627298 | Msa0382860:CDS | 40.0% | |
| !! | TACCAAGCTCTTTCTAGCTT+GGG | - | chr3_1:85627303-85627322 | Msa0382860:intron | 40.0% |
| TGTGTTGCAGGGTTTGTATT+TGG | - | chr3_1:85627427-85627446 | Msa0382860:intron | 40.0% | |
| TTGCAGGGTTTGTATTTGGA+CGG | - | chr3_1:85627431-85627450 | Msa0382860:intron | 40.0% | |
| AGAATTGCAGGGGAGTTATT+TGG | - | chr3_1:85627513-85627532 | Msa0382860:CDS | 40.0% | |
| ! | GACGAAGGATTTTCAACCTT+GGG | + | chr3_1:85627698-85627717 | None:intergenic | 40.0% |
| CAAGGTTGAAAATCCTTCGT+CGG | - | chr3_1:85627697-85627716 | Msa0382860:CDS | 40.0% | |
| AGGAATTGCAATTCCAATGG+CGG | - | chr3_1:85627720-85627739 | Msa0382860:CDS | 40.0% | |
| AATGACTGCGAGTAATCCAT+TGG | + | chr3_1:85627750-85627769 | None:intergenic | 40.0% | |
| AAAGCAAGATCATGGCGATA+TGG | - | chr3_1:85627809-85627828 | Msa0382860:intron | 40.0% | |
| TCTTGCATTTCAATTCAGGG+AGG | - | chr3_1:85627940-85627959 | Msa0382860:CDS | 40.0% | |
| !! | CGAGGCTTTATTGCAGATTA+TGG | - | chr3_1:85627966-85627985 | Msa0382860:CDS | 40.0% |
| AGATTATGGTGTTCCAGTGA+TGG | - | chr3_1:85627980-85627999 | Msa0382860:CDS | 40.0% | |
| AACCTGCATCTCTTTATCAC+TGG | - | chr3_1:85628090-85628109 | Msa0382860:CDS | 40.0% | |
| TTATCACTGGACAGTAGTGA+AGG | - | chr3_1:85628103-85628122 | Msa0382860:CDS | 40.0% | |
| CACTAACACGTGTCATACAT+CGG | + | chr3_1:85628268-85628287 | None:intergenic | 40.0% | |
| TAACAGCTTCTACAAACTGC+AGG | - | chr3_1:85628354-85628373 | Msa0382860:CDS | 40.0% | |
| TCTACAAACTGCAGGATATG+TGG | - | chr3_1:85628362-85628381 | Msa0382860:CDS | 40.0% | |
| ! | ATTCCAGCTTTGATGATAGC+AGG | - | chr3_1:85628418-85628437 | Msa0382860:intron | 40.0% |
| AAACCTGCTATCATCAAAGC+TGG | + | chr3_1:85628424-85628443 | None:intergenic | 40.0% | |
| ACATCATAATGGTAGGCAGA+TGG | + | chr3_1:85628511-85628530 | None:intergenic | 40.0% | |
| TCCCATGCATACAAAGAGTT+TGG | - | chr3_1:85628703-85628722 | Msa0382860:CDS | 40.0% | |
| GCCAAACTCTTTGTATGCAT+GGG | + | chr3_1:85628707-85628726 | None:intergenic | 40.0% | |
| TGCCAAACTCTTTGTATGCA+TGG | + | chr3_1:85628708-85628727 | None:intergenic | 40.0% | |
| CAAAGAGTTTGGCAGTTCTT+AGG | - | chr3_1:85628714-85628733 | Msa0382860:CDS | 40.0% | |
| ! | ATATTTTGCATCAAGGCTCC+TGG | - | chr3_1:85628755-85628774 | Msa0382860:CDS | 40.0% |
| CAAATCAATGGTGCAACACA+AGG | + | chr3_1:85628818-85628837 | None:intergenic | 40.0% | |
| GCAAGCTGTGTTCATTGAAA+TGG | - | chr3_1:85628921-85628940 | Msa0382860:intron | 40.0% | |
| CCCCTACTGTATGTATTGTT+AGG | - | chr3_1:85628950-85628969 | Msa0382860:intron | 40.0% | |
| CTTTGTTCATTAACTCGGAC+TGG | + | chr3_1:85629172-85629191 | None:intergenic | 40.0% | |
| TAGGCATCTCCGTTATCAAA+AGG | - | chr3_1:85629236-85629255 | Msa0382860:CDS | 40.0% | |
| !! | GATACCTACCTCGGTTTTAT+GGG | - | chr3_1:85629258-85629277 | Msa0382860:intron | 40.0% |
| !! | ATACCTACCTCGGTTTTATG+GGG | - | chr3_1:85629259-85629278 | Msa0382860:intron | 40.0% |
| ! | ATGGCAATTGATAGTCTTCC+TGG | - | chr3_1:85629295-85629314 | Msa0382860:intron | 40.0% |
| ! | TGGCAATTGATAGTCTTCCT+GGG | - | chr3_1:85629296-85629315 | Msa0382860:intron | 40.0% |
| AGATACACATGCCTCATTTG+TGG | - | chr3_1:85629475-85629494 | Msa0382860:CDS | 40.0% | |
| ! | AATCCAGCTATGGTCTTGAA+TGG | + | chr3_1:85629509-85629528 | None:intergenic | 40.0% |
| TAAGGCTGTAAATCCAGCTA+TGG | + | chr3_1:85629519-85629538 | None:intergenic | 40.0% | |
| TGGATTTACAGCCTTACAGT+TGG | - | chr3_1:85629523-85629542 | Msa0382860:CDS | 40.0% | |
| ATGAGAAGGAAGAATGGTAG+CGG | + | chr3_1:85629605-85629624 | None:intergenic | 40.0% | |
| ! | GCTTGAATATCTTTGGAAGG+AGG | + | chr3_1:85629643-85629662 | None:intergenic | 40.0% |
| ATTCAAGCCTAACCATCTTC+AGG | - | chr3_1:85629655-85629674 | Msa0382860:CDS | 40.0% | |
| TCAAGTTCCTGAAGATGGTT+AGG | + | chr3_1:85629665-85629684 | None:intergenic | 40.0% | |
| AAGCATCAAGTTCCTGAAGA+TGG | + | chr3_1:85629670-85629689 | None:intergenic | 40.0% | |
| ACTTGATGCTTCTGAGTATG+AGG | - | chr3_1:85629679-85629698 | Msa0382860:CDS | 40.0% | |
| AGTACGTAGTATGTCACTCA+GGG | - | chr3_1:85629724-85629743 | Msa0382860:CDS | 40.0% | |
| TACTCCAAGCTTTCCAACTT+AGG | - | chr3_1:85629888-85629907 | Msa0382860:intron | 40.0% | |
| CCATCATTATCACTATCACG+TGG | + | chr3_1:85629943-85629962 | None:intergenic | 40.0% | |
| ! | CCACGTGATAGTGATAATGA+TGG | - | chr3_1:85629940-85629959 | Msa0382860:CDS | 40.0% |
| GATCATTGAAGCTGTTACTG+CGG | + | chr3_1:85630062-85630081 | None:intergenic | 40.0% | |
| GATCATTGAAGCTGTTACTG+TGG | + | chr3_1:85630062-85630081 | None:intergenic | 40.0% | |
| CTTCATTGAAGCTGTTACTG+TGG | + | chr3_1:85630116-85630135 | None:intergenic | 40.0% | |
| TGGTCATTTCCTTCCTAAGT+TGG | - | chr3_1:85630518-85630537 | Msa0382860:five_prime_UTR | 40.0% | |
| AAAGATGGTACGAGAGTGAA+AGG | - | chr3_1:85630579-85630598 | Msa0382860:five_prime_UTR | 40.0% | |
| AGTGACGTTTGTGAATACTC+AGG | + | chr3_1:85630776-85630795 | None:intergenic | 40.0% | |
| GTGTCTCTCTCATCTTTGAC+TGG | - | chr3_1:85626421-85626440 | Msa0382860:three_prime_UTR | 45.0% | |
| !! | TAACATGGGAGCACCATTTG+AGG | - | chr3_1:85626878-85626897 | Msa0382860:CDS | 45.0% |
| !! | AACATGGGAGCACCATTTGA+GGG | - | chr3_1:85626879-85626898 | Msa0382860:CDS | 45.0% |
| TGTTCTCCGAAAGCAATGAC+CGG | + | chr3_1:85627103-85627122 | None:intergenic | 45.0% | |
| ! | TTGGCATCTACTGCCATTTG+TGG | - | chr3_1:85627166-85627185 | Msa0382860:intron | 45.0% |
| !! | GTACCAAGCTCTTTCTAGCT+TGG | - | chr3_1:85627302-85627321 | Msa0382860:intron | 45.0% |
| ATTGTTTGAACCACAGGGAC+TGG | - | chr3_1:85627655-85627674 | Msa0382860:CDS | 45.0% | |
| ! | CGACGAAGGATTTTCAACCT+TGG | + | chr3_1:85627699-85627718 | None:intergenic | 45.0% |
| AATTGCAATTCCTCCGACGA+AGG | + | chr3_1:85627713-85627732 | None:intergenic | 45.0% | |
| CGGAGGAATTGCAATTCCAA+TGG | - | chr3_1:85627717-85627736 | Msa0382860:CDS | 45.0% | |
| TTCCAATGGCGGTATACCAA+TGG | - | chr3_1:85627731-85627750 | Msa0382860:CDS | 45.0% | |
| ATCCATTGGTATACCGCCAT+TGG | + | chr3_1:85627736-85627755 | None:intergenic | 45.0% | |
| ! | TTCCAGTGATGGTAGTGTTG+TGG | - | chr3_1:85627991-85628010 | Msa0382860:CDS | 45.0% |
| TTCCAAGTGGTGTTCCTAGA+AGG | - | chr3_1:85628045-85628064 | Msa0382860:CDS | 45.0% | |
| AGTGGACAAAACAGCCTTCT+AGG | + | chr3_1:85628062-85628081 | None:intergenic | 45.0% | |
| TAAAGAGATGCAGGTTCCCA+GGG | + | chr3_1:85628086-85628105 | None:intergenic | 45.0% | |
| ATAAAGAGATGCAGGTTCCC+AGG | + | chr3_1:85628087-85628106 | None:intergenic | 45.0% | |
| GTCCAGTGATAAAGAGATGC+AGG | + | chr3_1:85628095-85628114 | None:intergenic | 45.0% | |
| CAAACTGCAGGATATGTGGA+AGG | - | chr3_1:85628366-85628385 | Msa0382860:CDS | 45.0% | |
| ACTCTGATATGTGGTCTCCT+TGG | - | chr3_1:85628647-85628666 | Msa0382860:intron | 45.0% | |
| TGTGGAAGGACTCCATTTGA+AGG | + | chr3_1:85628680-85628699 | None:intergenic | 45.0% | |
| TTTGTATGCATGGGAGACTG+TGG | + | chr3_1:85628698-85628717 | None:intergenic | 45.0% | |
| AGAGTTTGGCAGTTCTTAGG+AGG | - | chr3_1:85628717-85628736 | Msa0382860:CDS | 45.0% | |
| TCGGATCAGCTGCAAATCAA+TGG | + | chr3_1:85628830-85628849 | None:intergenic | 45.0% | |
| ATTTGCAGCTGATCCGAAAG+AGG | - | chr3_1:85628833-85628852 | Msa0382860:CDS | 45.0% | |
| TTTGCAGCTGATCCGAAAGA+GGG | - | chr3_1:85628834-85628853 | Msa0382860:CDS | 45.0% | |
| ! | CGCTTTTCACAACCCTCTTT+CGG | + | chr3_1:85628849-85628868 | None:intergenic | 45.0% |
| CTGTTGTTCCATGCATTCCT+TGG | + | chr3_1:85628872-85628891 | None:intergenic | 45.0% | |
| TCTTGAACAAGTCTCGTGTC+TGG | + | chr3_1:85629005-85629024 | None:intergenic | 45.0% | |
| TGATACCAAGGGTTGTGCAA+TGG | - | chr3_1:85629108-85629127 | Msa0382860:CDS | 45.0% | |
| ! | GGATACCTACCTCGGTTTTA+TGG | - | chr3_1:85629257-85629276 | Msa0382860:intron | 45.0% |
| TATCCCCATAAAACCGAGGT+AGG | + | chr3_1:85629265-85629284 | None:intergenic | 45.0% | |
| TCTTCCTGGGAATCAGTTCT+GGG | - | chr3_1:85629309-85629328 | Msa0382860:intron | 45.0% | |
| !! | ATTACTTGTAACGCCGGCTT+GGG | + | chr3_1:85629360-85629379 | None:intergenic | 45.0% |
| ! | AATTACTTGTAACGCCGGCT+TGG | + | chr3_1:85629361-85629380 | None:intergenic | 45.0% |
| TGGTACTGTCTCCACAAATG+AGG | + | chr3_1:85629489-85629508 | None:intergenic | 45.0% | |
| GTACCATTCAAGACCATAGC+TGG | - | chr3_1:85629503-85629522 | Msa0382860:CDS | 45.0% | |
| GACATACTACGTACTGCAGA+TGG | + | chr3_1:85629719-85629738 | None:intergenic | 45.0% | |
| CAGTACGTAGTATGTCACTC+AGG | - | chr3_1:85629723-85629742 | Msa0382860:CDS | 45.0% | |
| TGGATGAGATGACAACCAAC+AGG | - | chr3_1:85629995-85630014 | Msa0382860:CDS | 45.0% | |
| GGATGAGATGACAACCAACA+GGG | - | chr3_1:85629996-85630015 | Msa0382860:CDS | 45.0% | |
| GATGAGATGACAACCAACAG+GGG | - | chr3_1:85629997-85630016 | Msa0382860:CDS | 45.0% | |
| AAGTTTCAACTCTCCCCTGT+TGG | + | chr3_1:85630013-85630032 | None:intergenic | 45.0% | |
| AATATTCAGACAGCACCTCC+AGG | + | chr3_1:85630256-85630275 | None:intergenic | 45.0% | |
| ACTTCATGGCCAACTTAGGA+AGG | + | chr3_1:85630530-85630549 | None:intergenic | 45.0% | |
| GTGAACTTCATGGCCAACTT+AGG | + | chr3_1:85630534-85630553 | None:intergenic | 45.0% | |
| !! | GTTAGGTTGAGGGGAAAAGA+TGG | - | chr3_1:85630564-85630583 | Msa0382860:five_prime_UTR | 45.0% |
| AAAAAAAAGACGGGGGAGCA+AGG | - | chr3_1:85630610-85630629 | Msa0382860:five_prime_UTR | 45.0% | |
| CGTTTGTGAATACTCAGGTG+TGG | + | chr3_1:85630771-85630790 | None:intergenic | 45.0% | |
| !! | AAAAAATTAATAATCATAAA+AGG | + | chr3_1:85626633-85626652 | None:intergenic | 5.0% |
| TTTCCTCCTTCAGCTGTGAG+AGG | - | chr3_1:85626851-85626870 | Msa0382860:exon | 50.0% | |
| TTTCCTCTCACAGCTGAAGG+AGG | + | chr3_1:85626857-85626876 | None:intergenic | 50.0% | |
| ATTCTTTGCTTCCGCGCTTC+CGG | - | chr3_1:85627081-85627100 | Msa0382860:intron | 50.0% | |
| AAGAGCTTGGTACCCAGTTG+AGG | + | chr3_1:85627295-85627314 | None:intergenic | 50.0% | |
| AGCCCAAGCTAGAAAGAGCT+TGG | + | chr3_1:85627308-85627327 | None:intergenic | 50.0% | |
| !! | AAGCTCTTTCTAGCTTGGGC+TGG | - | chr3_1:85627307-85627326 | Msa0382860:intron | 50.0% |
| !! | TCTTTCTAGCTTGGGCTGGT+TGG | - | chr3_1:85627311-85627330 | Msa0382860:intron | 50.0% |
| ! | TTTGAACCACAGGGACTGGT+AGG | - | chr3_1:85627659-85627678 | Msa0382860:CDS | 50.0% |
| GGTTGAAAATCCTTCGTCGG+AGG | - | chr3_1:85627700-85627719 | Msa0382860:CDS | 50.0% | |
| TTCAATTCAGGGAGGCTACG+AGG | - | chr3_1:85627948-85627967 | Msa0382860:CDS | 50.0% | |
| GTCCACAACACTACCATCAC+TGG | + | chr3_1:85627996-85628015 | None:intergenic | 50.0% | |
| ! | AGCCTTCTAGGAACACCACT+TGG | + | chr3_1:85628050-85628069 | None:intergenic | 50.0% |
| !! | GCTGTTTTGTCCACTTCCCT+GGG | - | chr3_1:85628067-85628086 | Msa0382860:CDS | 50.0% |
| TCATAGCGTGGCTTCTCAGA+TGG | - | chr3_1:85628456-85628475 | Msa0382860:intron | 50.0% | |
| ! | GGTAGGCAGATGGCTTTTGA+AGG | + | chr3_1:85628501-85628520 | None:intergenic | 50.0% |
| CATTTGAAGGAGGAAGGCCA+AGG | + | chr3_1:85628667-85628686 | None:intergenic | 50.0% | |
| ! | CTTGGCCTTCCTCCTTCAAA+TGG | - | chr3_1:85628665-85628684 | Msa0382860:intron | 50.0% |
| GGACTCCATTTGAAGGAGGA+AGG | + | chr3_1:85628673-85628692 | None:intergenic | 50.0% | |
| GGAAGGACTCCATTTGAAGG+AGG | + | chr3_1:85628677-85628696 | None:intergenic | 50.0% | |
| TATGCATGGGAGACTGTGGA+AGG | + | chr3_1:85628694-85628713 | None:intergenic | 50.0% | |
| TTTGGCAGTTCTTAGGAGGC+AGG | - | chr3_1:85628721-85628740 | Msa0382860:CDS | 50.0% | |
| !! | GAAAAGCGCCAAGGAATGCA+TGG | - | chr3_1:85628861-85628880 | Msa0382860:intron | 50.0% |
| AGGTTCCATTGCACAACCCT+TGG | + | chr3_1:85629116-85629135 | None:intergenic | 50.0% | |
| CAATCAGGAGGGACTGCAAT+AGG | + | chr3_1:85629204-85629223 | None:intergenic | 50.0% | |
| CTATTGCAGTCCCTCCTGAT+TGG | - | chr3_1:85629202-85629221 | Msa0382860:CDS | 50.0% | |
| GTCTTCCTGGGAATCAGTTC+TGG | - | chr3_1:85629308-85629327 | Msa0382860:intron | 50.0% | |
| ! | CTTTCCCAGAACTGATTCCC+AGG | + | chr3_1:85629316-85629335 | None:intergenic | 50.0% |
| !! | CTGGGAATCAGTTCTGGGAA+AGG | - | chr3_1:85629314-85629333 | Msa0382860:intron | 50.0% |
| !! | TTACTTGTAACGCCGGCTTG+GGG | + | chr3_1:85629359-85629378 | None:intergenic | 50.0% |
| TGTTCTGTTTCGGGGTCACA+TGG | - | chr3_1:85629555-85629574 | Msa0382860:intron | 50.0% | |
| GTCACATGGATACCGATAGG+TGG | - | chr3_1:85629569-85629588 | Msa0382860:intron | 50.0% | |
| GTACTAGGGCAGATTTGACC+TGG | - | chr3_1:85630235-85630254 | Msa0382860:intron | 50.0% | |
| GGTACGAGAGTGAAAGGACA+AGG | - | chr3_1:85630585-85630604 | Msa0382860:five_prime_UTR | 50.0% | |
| TGGGTCTGCGCAATCTGTTC+CGG | - | chr3_1:85626948-85626967 | Msa0382860:CDS | 55.0% | |
| GAAAGCAATGACCGGAAGCG+CGG | + | chr3_1:85627095-85627114 | None:intergenic | 55.0% | |
| GCGCTTCCGGTCATTGCTTT+CGG | - | chr3_1:85627094-85627113 | Msa0382860:intron | 55.0% | |
| ATGCCTGACGACGTTCCAAG+TGG | - | chr3_1:85628032-85628051 | Msa0382860:CDS | 55.0% | |
| ACACCACTTGGAACGTCGTC+AGG | + | chr3_1:85628038-85628057 | None:intergenic | 55.0% | |
| !! | GGCTGTTTTGTCCACTTCCC+TGG | - | chr3_1:85628066-85628085 | Msa0382860:CDS | 55.0% |
| !! | GAGGGTTGTGAAAAGCGCCA+AGG | - | chr3_1:85628852-85628871 | Msa0382860:intron | 55.0% |
| CAGGAGGGACTGCAATAGGT+TGG | + | chr3_1:85629200-85629219 | None:intergenic | 55.0% | |
| GGGGTCACATGGATACCGAT+AGG | - | chr3_1:85629566-85629585 | Msa0382860:intron | 55.0% | |
| CTAGGGCAGATTTGACCTGG+AGG | - | chr3_1:85630238-85630257 | Msa0382860:intron | 55.0% | |
| GTGAGAGCAGTCCTCTTCAG+AGG | + | chr3_1:85630324-85630343 | None:intergenic | 55.0% | |
| GCGCAATCTGTTCCGGCGTT+AGG | - | chr3_1:85626955-85626974 | Msa0382860:CDS | 60.0% | |
| AACTCGCCTACCAGTCCCTG+TGG | + | chr3_1:85627668-85627687 | None:intergenic | 60.0% | |
| AGGCGAGTTCAGCACTCCCA+AGG | - | chr3_1:85627679-85627698 | Msa0382860:CDS | 60.0% | |
| GATGCAGGTTCCCAGGGAAG+TGG | + | chr3_1:85628080-85628099 | None:intergenic | 60.0% | |
| TCCTCTTCGTCACCCCAAGC+CGG | - | chr3_1:85629344-85629363 | Msa0382860:intron | 60.0% | |
| !! | GCCGGCTTGGGGTGACGAAG+AGG | + | chr3_1:85629348-85629367 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 85626404 | 85630826 | 85626404 | ID=Msa0382860;Name=Msa0382860 |
| chr3_1 | mRNA | 85626404 | 85630826 | 85626404 | ID=Msa0382860-mRNA-1;Parent=Msa0382860;Name=Msa0382860-mRNA-1;_AED=0.07;_eAED=0.07;_QI=478|0.90|0.91|1|1|1|12|462|682 |
| chr3_1 | exon | 85626404 | 85626988 | 85626404 | ID=Msa0382860-mRNA-1:exon:22486;Parent=Msa0382860-mRNA-1 |
| chr3_1 | exon | 85627192 | 85627299 | 85627192 | ID=Msa0382860-mRNA-1:exon:22485;Parent=Msa0382860-mRNA-1 |
| chr3_1 | exon | 85627485 | 85627764 | 85627485 | ID=Msa0382860-mRNA-1:exon:22484;Parent=Msa0382860-mRNA-1 |
| chr3_1 | exon | 85627856 | 85628163 | 85627856 | ID=Msa0382860-mRNA-1:exon:22483;Parent=Msa0382860-mRNA-1 |
| chr3_1 | exon | 85628273 | 85628389 | 85628273 | ID=Msa0382860-mRNA-1:exon:22482;Parent=Msa0382860-mRNA-1 |
| chr3_1 | exon | 85628488 | 85628583 | 85628488 | ID=Msa0382860-mRNA-1:exon:22481;Parent=Msa0382860-mRNA-1 |
| chr3_1 | exon | 85628681 | 85628854 | 85628681 | ID=Msa0382860-mRNA-1:exon:22480;Parent=Msa0382860-mRNA-1 |
| chr3_1 | exon | 85629106 | 85629272 | 85629106 | ID=Msa0382860-mRNA-1:exon:22479;Parent=Msa0382860-mRNA-1 |
| chr3_1 | exon | 85629394 | 85629559 | 85629394 | ID=Msa0382860-mRNA-1:exon:22478;Parent=Msa0382860-mRNA-1 |
| chr3_1 | exon | 85629655 | 85629793 | 85629655 | ID=Msa0382860-mRNA-1:exon:22477;Parent=Msa0382860-mRNA-1 |
| chr3_1 | exon | 85629898 | 85630173 | 85629898 | ID=Msa0382860-mRNA-1:exon:22476;Parent=Msa0382860-mRNA-1 |
| chr3_1 | exon | 85630254 | 85630826 | 85630254 | ID=Msa0382860-mRNA-1:exon:22475;Parent=Msa0382860-mRNA-1 |
| chr3_1 | five_prime_UTR | 85630349 | 85630826 | 85630349 | ID=Msa0382860-mRNA-1:five_prime_utr;Parent=Msa0382860-mRNA-1 |
| chr3_1 | CDS | 85630254 | 85630348 | 85630254 | ID=Msa0382860-mRNA-1:cds;Parent=Msa0382860-mRNA-1 |
| chr3_1 | CDS | 85629898 | 85630173 | 85629898 | ID=Msa0382860-mRNA-1:cds;Parent=Msa0382860-mRNA-1 |
| chr3_1 | CDS | 85629655 | 85629793 | 85629655 | ID=Msa0382860-mRNA-1:cds;Parent=Msa0382860-mRNA-1 |
| chr3_1 | CDS | 85629394 | 85629559 | 85629394 | ID=Msa0382860-mRNA-1:cds;Parent=Msa0382860-mRNA-1 |
| chr3_1 | CDS | 85629106 | 85629272 | 85629106 | ID=Msa0382860-mRNA-1:cds;Parent=Msa0382860-mRNA-1 |
| chr3_1 | CDS | 85628681 | 85628854 | 85628681 | ID=Msa0382860-mRNA-1:cds;Parent=Msa0382860-mRNA-1 |
| chr3_1 | CDS | 85628488 | 85628583 | 85628488 | ID=Msa0382860-mRNA-1:cds;Parent=Msa0382860-mRNA-1 |
| chr3_1 | CDS | 85628273 | 85628389 | 85628273 | ID=Msa0382860-mRNA-1:cds;Parent=Msa0382860-mRNA-1 |
| chr3_1 | CDS | 85627856 | 85628163 | 85627856 | ID=Msa0382860-mRNA-1:cds;Parent=Msa0382860-mRNA-1 |
| chr3_1 | CDS | 85627485 | 85627764 | 85627485 | ID=Msa0382860-mRNA-1:cds;Parent=Msa0382860-mRNA-1 |
| chr3_1 | CDS | 85627192 | 85627299 | 85627192 | ID=Msa0382860-mRNA-1:cds;Parent=Msa0382860-mRNA-1 |
| chr3_1 | CDS | 85626866 | 85626988 | 85626866 | ID=Msa0382860-mRNA-1:cds;Parent=Msa0382860-mRNA-1 |
| chr3_1 | three_prime_UTR | 85626404 | 85626865 | 85626404 | ID=Msa0382860-mRNA-1:three_prime_utr;Parent=Msa0382860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
